Citrus Sinensis ID: 029579

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF
cEEEccccccccHHHHHcccccccccccHHHHHHHHHcccccccccEEEcccEEEEEEcccccccccccccccccEEEEEEEEEEcHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccccEEEEEEcccccccEEEEEEcccEEEEEEcHHHHHHHccccccccccccc
ccEEEccccccccHHHcccccccccccccHHHHHHHHHHcccccEEEEEcccEEEEEcccccccccccEEEEcccEEEEEcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccEEEEEEEccccEEEEEEcccccEEEEEEEcccccEEEccHHHHHHHHccccccccccccc
mlgvfssaivsppeelvaagsrtpspkttsTALVDRFLQTnssavsvqvGDNVTLaythqnesplrqrsfAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKAlrdrapyppnhvvghlSGYFAFIVYdkststlfvasdqfgkvplywgitadghvafaddadllkgacgkslasfpqggf
mlgvfssaivsppeelvaagsrtpspkTTSTALVDRFLQTNSSAVSVQVGDNVTLAYthqnesplrqrSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSlasfpqggf
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF
*********************************VDRFLQTNSSAVSVQVGDNVTLAYTHQN**PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACG***********
MLGVFSSAIVSPPE**********************FLQTNSSAVSVQVGDNVTLAYTHQN**********VKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF
MLGVFSSAIVSPPEE*************TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF
MLG*FSSAIVSPPEELVA********KTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query191 2.2.26 [Sep-21-2011]
P24805149 Stem-specific protein TSJ N/A no 0.764 0.979 0.436 2e-30
Q54MB4 557 Probable asparagine synth yes no 0.345 0.118 0.388 8e-06
P22106 554 Asparagine synthetase B [ N/A no 0.523 0.180 0.278 0.0001
Q9LV77 578 Asparagine synthetase [gl no no 0.335 0.110 0.369 0.0006
P49088 561 Asparagine synthetase [gl yes no 0.513 0.174 0.267 0.0007
Q61024 561 Asparagine synthetase [gl yes no 0.518 0.176 0.265 0.0008
Q43011 591 Asparagine synthetase [gl no no 0.335 0.108 0.369 0.0009
>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 3/149 (2%)

Query: 1   MLGVFSSAIVSPPEELV--AAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
           ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFS 59

Query: 59  HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP 118
           H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAP
Sbjct: 60  HGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAP 119

Query: 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147
           YPP+ V+  L G FAFI++D   STLF+A
Sbjct: 120 YPPDQVIKELEGKFAFILFDSKASTLFLA 148

Nicotiana tabacum (taxid: 4097)
>sp|Q54MB4|ASNS_DICDI Probable asparagine synthetase [glutamine-hydrolyzing] OS=Dictyostelium discoideum GN=asns PE=1 SV=1 Back     alignment and function description
>sp|P22106|ASNB_ECOLI Asparagine synthetase B [glutamine-hydrolyzing] OS=Escherichia coli (strain K12) GN=asnB PE=1 SV=3 Back     alignment and function description
>sp|Q9LV77|ASNS2_ARATH Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Arabidopsis thaliana GN=ASN2 PE=2 SV=1 Back     alignment and function description
>sp|P49088|ASNS_RAT Asparagine synthetase [glutamine-hydrolyzing] OS=Rattus norvegicus GN=Asns PE=2 SV=3 Back     alignment and function description
>sp|Q61024|ASNS_MOUSE Asparagine synthetase [glutamine-hydrolyzing] OS=Mus musculus GN=Asns PE=2 SV=3 Back     alignment and function description
>sp|Q43011|ASNS2_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Oryza sativa subsp. japonica GN=Os06g0265000 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query191
56606534236 aluminum-induced protein [Codonopsis lan 1.0 0.809 0.858 1e-92
388513727236 unknown [Lotus japonicus] 1.0 0.809 0.853 2e-92
34541994236 Al-induced protein [Gossypium hirsutum] 1.0 0.809 0.858 8e-92
224100337236 predicted protein [Populus trichocarpa] 1.0 0.809 0.869 2e-91
255552269236 Stem-specific protein TSJT1, putative [R 1.0 0.809 0.863 3e-91
225432548236 PREDICTED: stem-specific protein TSJT1 [ 1.0 0.809 0.863 6e-91
76573367252 unknown [Solanum tuberosum] 1.0 0.757 0.853 8e-91
13958130236 aluminium induced protein [Avicennia mar 1.0 0.809 0.842 1e-90
356563505236 PREDICTED: stem-specific protein TSJT1-l 1.0 0.809 0.848 4e-90
388519241236 unknown [Medicago truncatula] 1.0 0.809 0.832 1e-89
>gi|56606534|gb|AAW02789.1| aluminum-induced protein [Codonopsis lanceolata] Back     alignment and taxonomy information
 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 164/191 (85%), Positives = 181/191 (94%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+I+SPPEELVAAGSRTPSPK T+TALV+RFL++N+SAVS+QVGD+V LAYTH 
Sbjct: 1   MLGVFSSSIMSPPEELVAAGSRTPSPKITATALVNRFLKSNASAVSMQVGDDVHLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESP   RSFAVKDEIFCLFEGALDNLGSL+QQYGL+KSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPSAPRSFAVKDEIFCLFEGALDNLGSLKQQYGLSKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACG 180
           PNHVVGHL G FAF+V+DKSTSTLFVA+DQ GKVPLYWGITADG+VAFA+DADLLKGACG
Sbjct: 121 PNHVVGHLEGNFAFVVFDKSTSTLFVATDQAGKVPLYWGITADGYVAFANDADLLKGACG 180

Query: 181 KSLASFPQGGF 191
           KSLASFPQG F
Sbjct: 181 KSLASFPQGCF 191

Source: Codonopsis lanceolata

Species: Codonopsis lanceolata

Genus: Codonopsis

Family: Campanulaceae

Order: Asterales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388513727|gb|AFK44925.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|34541994|gb|AAQ74889.1| Al-induced protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|224100337|ref|XP_002311836.1| predicted protein [Populus trichocarpa] gi|118485817|gb|ABK94756.1| unknown [Populus trichocarpa] gi|222851656|gb|EEE89203.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255552269|ref|XP_002517179.1| Stem-specific protein TSJT1, putative [Ricinus communis] gi|223543814|gb|EEF45342.1| Stem-specific protein TSJT1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225432548|ref|XP_002280658.1| PREDICTED: stem-specific protein TSJT1 [Vitis vinifera] gi|297736991|emb|CBI26192.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|76573367|gb|ABA46788.1| unknown [Solanum tuberosum] Back     alignment and taxonomy information
>gi|13958130|gb|AAK50814.1|AF363286_1 aluminium induced protein [Avicennia marina] Back     alignment and taxonomy information
>gi|356563505|ref|XP_003550002.1| PREDICTED: stem-specific protein TSJT1-like [Glycine max] Back     alignment and taxonomy information
>gi|388519241|gb|AFK47682.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query191
TAIR|locus:2182137234 AILP1 "AT5G19140" [Arabidopsis 0.989 0.807 0.835 2.8e-82
TAIR|locus:2170822251 AT5G43830 "AT5G43830" [Arabido 1.0 0.760 0.429 2.3e-39
TAIR|locus:2090116253 AT3G15450 "AT3G15450" [Arabido 0.984 0.743 0.458 4.8e-39
TAIR|locus:2123994250 AT4G27450 "AT4G27450" [Arabido 0.989 0.756 0.453 2.1e-38
TAIR|locus:2084598248 AT3G22850 "AT3G22850" [Arabido 0.968 0.745 0.438 4.3e-38
DICTYBASE|DDB_G0286059 557 asns "asparagine synthetase" [ 0.329 0.113 0.390 0.00015
TIGR_CMR|CPS_2794 554 CPS_2794 "asparagine synthase 0.335 0.115 0.369 0.0002
UNIPROTKB|Q9KTB2 554 VC_0991 "Asparagine synthetase 0.602 0.207 0.292 0.00081
TIGR_CMR|VC_0991 554 VC_0991 "asparagine synthetase 0.602 0.207 0.292 0.00081
FB|FBgn0041607 558 asparagine-synthetase "asparag 0.324 0.111 0.349 0.00082
TAIR|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 158/189 (83%), Positives = 172/189 (91%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
             MLG+FS AIVSPPEELVAAGSRTPSPKTT + LV+RF++ N SAVSVQVGD V LAY+H 
Sbjct:     1 MLGIFSGAIVSPPEELVAAGSRTPSPKTTGSTLVNRFVEKNPSAVSVQVGDYVQLAYSHH 60

Query:    61 NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
             NESPLR RSF  KDEIFCLF+G+LDNLGSL+QQYGLAK+ANEV+LVIEAYK LRDRAPYP
Sbjct:    61 NESPLRPRSFGAKDEIFCLFQGSLDNLGSLKQQYGLAKNANEVLLVIEAYKTLRDRAPYP 120

Query:   121 PNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACG 180
              NHVV HLSG FAF+V+DKSTSTLFVASDQ GKVPLYWGITADG+VAFADD DLLKGACG
Sbjct:   121 ANHVVAHLSGDFAFVVFDKSTSTLFVASDQVGKVPLYWGITADGYVAFADDVDLLKGACG 180

Query:   181 KSLASFPQG 189
             KSLASFPQG
Sbjct:   181 KSLASFPQG 189
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0009733 "response to auxin stimulus" evidence=ISS
GO:0010044 "response to aluminum ion" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286059 asns "asparagine synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2794 CPS_2794 "asparagine synthase (glutamine-hydrolyzing)" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KTB2 VC_0991 "Asparagine synthetase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0991 VC_0991 "asparagine synthetase B, glutamine-hydrolyzing" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
FB|FBgn0041607 asparagine-synthetase "asparagine synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0009049102
SubName- Full=Putative uncharacterized protein; (237 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
pfam12481228 pfam12481, DUF3700, Aluminium induced protein 1e-114
cd01910224 cd01910, Wali7, This domain is present in Wali7, a 1e-113
cd00352220 cd00352, Gn_AT_II, Glutamine amidotransferases cla 1e-18
PTZ00077 586 PTZ00077, PTZ00077, asparagine synthetase-like pro 5e-13
cd00712220 cd00712, AsnB, Glutamine amidotransferases class-I 1e-11
PRK09431 554 PRK09431, asnB, asparagine synthetase B; Provision 7e-11
pfam13537120 pfam13537, GATase_7, Glutamine amidotransferase do 1e-10
pfam13522130 pfam13522, GATase_6, Glutamine amidotransferase do 2e-10
PLN02549 578 PLN02549, PLN02549, asparagine synthase (glutamine 5e-10
COG0367 542 COG0367, AsnB, Asparagine synthase (glutamine-hydr 2e-08
TIGR03108 628 TIGR03108, eps_aminotran_1, exosortase A system-as 2e-08
TIGR01536 466 TIGR01536, asn_synth_AEB, asparagine synthase (glu 2e-07
TIGR03104 589 TIGR03104, trio_amidotrans, asparagine synthase fa 2e-04
>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein Back     alignment and domain information 
 Score =  323 bits (829), Expect = e-114
 Identities = 109/192 (56%), Positives = 133/192 (69%), Gaps = 2/192 (1%)

Query: 2   LGVFSSAIVSPPEELVAAGSRTPSP--KTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH 59
           L VF  ++  PPEEL +  SR PS   K     L+  F+  N +AVSV  GD+  LAY+H
Sbjct: 1   LAVFHKSVAKPPEELNSPASRLPSSAKKKGPEELLKDFVSANPNAVSVNFGDSAFLAYSH 60

Query: 60  QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPY 119
             +SPL  R FAV D+IFCLF+G L+NL SLRQQYGL+K+ANE +LVIEAY+ LRDR PY
Sbjct: 61  SKQSPLLPRLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRGPY 120

Query: 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGAC 179
           P + VV  L G FAF++YD  T T+FVA D  G VPL+WGI ADG + F+DD +LLK  C
Sbjct: 121 PADQVVKDLEGSFAFVLYDSKTGTVFVALDADGSVPLFWGIAADGSLVFSDDLELLKAGC 180

Query: 180 GKSLASFPQGGF 191
           GKS A FPQG F
Sbjct: 181 GKSFAPFPQGCF 192

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228
>gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum Back     alignment and domain information
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase) Back     alignment and domain information
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type Back     alignment and domain information
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional Back     alignment and domain information
>gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain Back     alignment and domain information
>gnl|CDD|222195 pfam13522, GATase_6, Glutamine amidotransferase domain Back     alignment and domain information
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1 Back     alignment and domain information
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>gnl|CDD|234108 TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 191
cd01910224 Wali7 This domain is present in Wali7, a protein o 100.0
PLN02549 578 asparagine synthase (glutamine-hydrolyzing) 100.0
PRK09431 554 asnB asparagine synthetase B; Provisional 100.0
PTZ00077 586 asparagine synthetase-like protein; Provisional 100.0
COG0367 542 AsnB Asparagine synthase (glutamine-hydrolyzing) [ 100.0
TIGR03104 589 trio_amidotrans asparagine synthase family amidotr 100.0
cd00712220 AsnB Glutamine amidotransferases class-II (GATase) 100.0
TIGR03108 628 eps_aminotran_1 exosortase 1 system-associated ami 100.0
cd03766181 Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn 100.0
TIGR01536 467 asn_synth_AEB asparagine synthase (glutamine-hydro 100.0
PRK08525 445 amidophosphoribosyltransferase; Provisional 100.0
PRK07631 475 amidophosphoribosyltransferase; Provisional 100.0
PF12481228 DUF3700: Aluminium induced protein ; InterPro: IPR 100.0
cd00714215 GFAT Glutamine amidotransferases class-II (Gn-AT)_ 100.0
PRK07272 484 amidophosphoribosyltransferase; Provisional 100.0
PRK06781 471 amidophosphoribosyltransferase; Provisional 100.0
KOG0571 543 consensus Asparagine synthase (glutamine-hydrolyzi 100.0
PRK06388 474 amidophosphoribosyltransferase; Provisional 100.0
PRK09123 479 amidophosphoribosyltransferase; Provisional 100.0
PRK07349 500 amidophosphoribosyltransferase; Provisional 100.0
PLN02440 479 amidophosphoribosyltransferase 100.0
PRK09246 501 amidophosphoribosyltransferase; Provisional 100.0
PRK07847 510 amidophosphoribosyltransferase; Provisional 100.0
PRK08341 442 amidophosphoribosyltransferase; Provisional 100.0
PRK00331 604 glucosamine--fructose-6-phosphate aminotransferase 100.0
PRK05793 469 amidophosphoribosyltransferase; Provisional 100.0
cd00715252 GPATase_N Glutamine amidotransferases class-II (GN 100.0
cd01907249 GlxB Glutamine amidotransferases class-II (Gn-AT)_ 99.97
TIGR01135 607 glmS glucosamine--fructose-6-phosphate aminotransf 99.97
cd00352220 Gn_AT_II Glutamine amidotransferases class-II (GAT 99.97
TIGR01134 442 purF amidophosphoribosyltransferase. Alternate nam 99.97
PTZ00295 640 glucosamine-fructose-6-phosphate aminotransferase; 99.97
cd01909199 betaLS_CarA_N Glutamine amidotransferases class-II 99.96
PF13537125 GATase_7: Glutamine amidotransferase domain; PDB: 99.96
COG0034 470 PurF Glutamine phosphoribosylpyrophosphate amidotr 99.95
PTZ00394 670 glucosamine-fructose-6-phosphate aminotransferase; 99.94
PLN02981 680 glucosamine:fructose-6-phosphate aminotransferase 99.94
PF13522133 GATase_6: Glutamine amidotransferase domain 99.94
KOG0572 474 consensus Glutamine phosphoribosylpyrophosphate am 99.92
COG0449 597 GlmS Glucosamine 6-phosphate synthetase, contains 99.89
KOG0573 520 consensus Asparagine synthase [Amino acid transpor 99.77
cd00713413 GltS Glutamine amidotransferases class-II (Gn-AT), 99.7
cd01908257 YafJ Glutamine amidotransferases class-II (Gn-AT)_ 99.62
TIGR03442251 conserved hypothetical protein TIGR03442. Members 99.57
PF00310361 GATase_2: Glutamine amidotransferases class-II; In 99.5
KOG1268 670 consensus Glucosamine 6-phosphate synthetases, con 99.49
PRK11750 1485 gltB glutamate synthase subunit alpha; Provisional 99.1
PF13230271 GATase_4: Glutamine amidotransferases class-II; PD 98.37
COG0067371 GltB Glutamate synthase domain 1 [Amino acid trans 97.98
PF09147201 DUF1933: Domain of unknown function (DUF1933); Int 97.92
COG0121252 Predicted glutamine amidotransferase [General func 95.9
KOG0399 2142 consensus Glutamate synthase [Amino acid transport 91.97
COG0067 371 GltB Glutamate synthase domain 1 [Amino acid trans 87.35
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum Back     alignment and domain information 
Probab=100.00  E-value=5.3e-41  Score=270.19  Aligned_cols=188  Identities=64%  Similarity=1.088  Sum_probs=162.2

Q ss_pred             eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeCCcEEEEEEeCCCCCCCCCeEeeCCcEEEEEE
Q 029579            2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE   81 (191)
Q Consensus         2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r~~~~~~~QP~~~~~~~~~lv~n   81 (191)
                      ++||.+.++++|+|+++|.+.+.  +..-.++++.+....|++..+.+++...++++..+...-.|.+++.++++++++|
T Consensus         1 laif~~~~~~~p~el~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn   78 (224)
T cd01910           1 LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ   78 (224)
T ss_pred             CcccccccCCCChHHcCCCcccc--CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence            57999999999999987766544  2233568888899999988888988899998765555667778888889999999


Q ss_pred             EEEechhhhHHHhCCCCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEe
Q 029579           82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGIT  161 (191)
Q Consensus        82 G~I~N~~eL~~~l~~~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~  161 (191)
                      |+|||+.+|+++|+...+.+|+++++++|++|+++|+.+..+++++|+|+|||+|||..++++++|||++|++||||+..
T Consensus        79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~  158 (224)
T cd01910          79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIA  158 (224)
T ss_pred             eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEe
Confidence            99999999999998745556666678999999777765667899999999999999999999999999999999999987


Q ss_pred             CCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579          162 ADGHVAFADDADLLKGACGKSLASFPQGGF  191 (191)
Q Consensus       162 ~~~~~~faSe~~aL~~~~~~~~~~~ppG~~  191 (191)
                      .+|.++||||+++|...|.+.+++||||||
T Consensus       159 ~dG~l~FASElkaL~~~c~~~~~~FPpG~~  188 (224)
T cd01910         159 ADGSVVFSDDVELVKASCGKSFAPFPKGCF  188 (224)
T ss_pred             CCCEEEEEeCHHHhhhhhccEEEEECCCCE
Confidence            678999999999999999888999999997

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
>PLN02549 asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PRK09431 asnB asparagine synthetase B; Provisional Back     alignment and domain information
>PTZ00077 asparagine synthetase-like protein; Provisional Back     alignment and domain information
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase Back     alignment and domain information
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type Back     alignment and domain information
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 Back     alignment and domain information
>cd03766 Gn_AT_II_novel Gn_AT_II_novel Back     alignment and domain information
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PRK08525 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK07631 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length Back     alignment and domain information
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type Back     alignment and domain information
>PRK07272 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK06781 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06388 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09123 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK07349 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PLN02440 amidophosphoribosyltransferase Back     alignment and domain information
>PRK09246 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK07847 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK08341 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed Back     alignment and domain information
>PRK05793 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type Back     alignment and domain information
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type Back     alignment and domain information
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing) Back     alignment and domain information
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase) Back     alignment and domain information
>TIGR01134 purF amidophosphoribosyltransferase Back     alignment and domain information
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type Back     alignment and domain information
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A Back     alignment and domain information
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase Back     alignment and domain information
>PF13522 GATase_6: Glutamine amidotransferase domain Back     alignment and domain information
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type Back     alignment and domain information
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type Back     alignment and domain information
>TIGR03442 conserved hypothetical protein TIGR03442 Back     alignment and domain information
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group Back     alignment and domain information
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PRK11750 gltB glutamate synthase subunit alpha; Provisional Back     alignment and domain information
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D Back     alignment and domain information
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism] Back     alignment and domain information
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices Back     alignment and domain information
>COG0121 Predicted glutamine amidotransferase [General function prediction only] Back     alignment and domain information
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
1ct9_A 553 Crystal Structure Of Asparagine Synthetase B From E 1e-05
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From Escherichia Coli Length = 553 Back     alignment and structure 
Iteration: 1

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 82  GALDNLGSLRQQYG-----LAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIV 136
           G + N  +LR +YG        S  EVIL +      +++ P      +  L G FAF +
Sbjct: 75  GEIYNHQALRAEYGDRYQFQTGSDCEVILAL-----YQEKGP----EFLDDLQGMFAFAL 125
Query: 137 YDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191
           YD       +  D  G +PLY G    G +  A +   L   C +++  FP G +
Sbjct: 126 YDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSY 179

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
1ct9_A 553 Asparagine synthetase B; amidotransferase, substra 4e-13
1jgt_A 513 Beta-lactam synthetase; asparagine synthetase, cla 2e-09
1q15_A 503 CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Length = 553 Back     alignment and structure
 Score = 65.6 bits (160), Expect = 4e-13
 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 14/85 (16%)

Query: 90  LRQQYGLA-----KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTL 144
           LR +YG        S  EVIL    Y+             +  L G FAF +YD      
Sbjct: 83  LRAEYGDRYQFQTGSDCEVIL--ALYQEKGPEF-------LDDLQGMFAFALYDSEKDAY 133

Query: 145 FVASDQFGKVPLYWGITADGHVAFA 169
            +  D  G +PLY G    G +  A
Sbjct: 134 LIGRDHLGIIPLYMGYDEHGQLYVA 158
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Length = 513 Back     alignment and structure
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Length = 503 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query191
1ct9_A 553 Asparagine synthetase B; amidotransferase, substra 100.0
1xff_A240 D-fructose-6-, glucosamine--fructose-6-phosphate a 100.0
1ao0_A 459 Glutamine phosphoribosylpyrophosphate amidotransfe 100.0
1ecf_A 504 Glutamine phosphoribosylpyrophosphate amidotransf; 99.97
2bpl_A 608 Glucosamine--fructose-6-phosphate aminotransferase 99.97
1jgt_A 513 Beta-lactam synthetase; asparagine synthetase, cla 99.95
1q15_A 503 CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, 99.93
3mdn_A274 Glutamine aminotransferase class-II domain protei; 99.89
1te5_A257 Conserved hypothetical protein; glutamine amidotra 99.81
1ea0_A 1479 Glutamate synthase [NADPH] large chain; oxidoreduc 99.58
1ofd_A 1520 Ferredoxin-dependent glutamate synthase 2; oxidore 99.53
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Back     alignment and structure
Probab=100.00  E-value=4.9e-37  Score=277.37  Aligned_cols=171  Identities=22%  Similarity=0.410  Sum_probs=145.6

Q ss_pred             eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeCCcEEEEEEeCC---CCCCCCCeEeeCCcEEE
Q 029579            2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQN---ESPLRQRSFAVKDEIFC   78 (191)
Q Consensus         2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r~~---~~~~~QP~~~~~~~~~l   78 (191)
                      |||+|..-.+...         ......+.+|++.|.|||||+.+++..++++|||+|..   ...+.||+.+.++++++
T Consensus         1 CGI~G~~~~~~~~---------~~~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~l   71 (553)
T 1ct9_A            1 ASIFGVFDIKTDA---------VELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVL   71 (553)
T ss_dssp             CEEEEEESCCSCH---------HHHHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEE
T ss_pred             CEEEEEEcCCCcc---------hhHHHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEE
Confidence            9999976322110         00245677899999999999999999989999999933   22689999987788999


Q ss_pred             EEEEEEechhhhHHHhC--C---CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCCC
Q 029579           79 LFEGALDNLGSLRQQYG--L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK  153 (191)
Q Consensus        79 v~nG~I~N~~eL~~~l~--~---~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~  153 (191)
                      +|||+|||+.+|+++|.  +   +.+|||++  +++|++||       .++++.|+|+|||++||..+++|+++||++|+
T Consensus        72 v~NGeIyN~~eLr~~L~~~~~f~s~sDtEvi--l~l~~~~g-------~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~  142 (553)
T 1ct9_A           72 AVNGEIYNHQALRAEYGDRYQFQTGSDCEVI--LALYQEKG-------PEFLDDLQGMFAFALYDSEKDAYLIGRDHLGI  142 (553)
T ss_dssp             EEEEEETTHHHHHHHHTTTSCCCSCCTTHHH--HHHHHHHT-------TTTGGGCCEEEEEEEEETTTTEEEEEECTTCC
T ss_pred             EEEEEEECHHHHHHHHhccCccCCCCcHHHH--HHHHHHHH-------HHHHHhCCccEEEEEEECCCCEEEEEECCCCC
Confidence            99999999999999984  2   67888875  79999998       88999999999999999988999999999999


Q ss_pred             ccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579          154 VPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF  191 (191)
Q Consensus       154 ~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~  191 (191)
                      |||||+...++.++||||+++|...+ +.++.|||||+
T Consensus       143 ~PLy~~~~~~~~~~faSe~~al~~~~-~~i~~l~pG~~  179 (553)
T 1ct9_A          143 IPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSY  179 (553)
T ss_dssp             SCCEEEECTTCCEEEESSGGGTTTTC-SEEEECCTTEE
T ss_pred             CCeEEEEecCCEEEEeechHHHHhhc-CCEEEECCCeE
Confidence            99999995356899999999998876 46999999985
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A* Back     alignment and structure
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* Back     alignment and structure
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Back     alignment and structure
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A* Back     alignment and structure
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Back     alignment and structure
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Back     alignment and structure
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi} Back     alignment and structure
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1 Back     alignment and structure
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Back     alignment and structure
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 191
d1q15a2204 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectob 3e-04
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Length = 204 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 16/94 (17%)

Query: 80  FEGALDNLGSLRQQYGLA------KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFA 133
             G+L N   L    G+        +  E++                     G     F 
Sbjct: 54  LIGSLYNRTFLIGLAGVWEGEAYLANDAELLA-----LLFTRLGANALALAEGD----FC 104

Query: 134 FIVYDKSTSTLFVASDQFGKVPLYWGITADGHVA 167
           F   D+    L V ++  G  P++        + 
Sbjct: 105 FF-IDEPNGELTVITESRGFSPVHVVQGKKAWMT 137

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query191
d1ct9a2192 Asparagine synthetase B, N-terminal domain {Escher 100.0
d1gph12234 Glutamine PRPP amidotransferase, N-terminal domain 100.0
d1jgta2206 beta-Lactam synthetase {Streptomyces clavuligerus 100.0
d1ecfa2249 Glutamine PRPP amidotransferase, N-terminal domain 99.97
d1xffa_238 Glucosamine 6-phosphate synthase, N-terminal domai 99.96
d1q15a2204 beta-Lactam synthetase {Pectobacterium carotovorum 99.96
d1te5a_253 Hypothetical protein YafJ (PA1307) {Pseudomonas ae 99.08
d1ofda3430 Alpha subunit of glutamate synthase, N-terminal do 98.86
d1ea0a3422 Alpha subunit of glutamate synthase, N-terminal do 98.76
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-42  Score=272.55  Aligned_cols=155  Identities=24%  Similarity=0.433  Sum_probs=138.3

Q ss_pred             hhhHHHHHHHhHccCCCCCceEeCCcEEEEEEeCC---CCCCCCCeEeeCCcEEEEEEEEEechhhhHHHhCC-----CC
Q 029579           27 KTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQN---ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL-----AK   98 (191)
Q Consensus        27 ~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r~~---~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l~~-----~~   98 (191)
                      ...+.+|.+.|+|||||+.+++..+++.|||+|..   .....||....+++++++|||+|||+.+|++++..     +.
T Consensus        17 ~~~~~~m~~~l~hRGpD~~~~~~~~~~~lgh~Rlsi~~~~~~~~~~~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~~~s~   96 (192)
T d1ct9a2          17 RKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTG   96 (192)
T ss_dssp             HHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSC
T ss_pred             HHHHHHHHHHhcccCCCCCCeEEeCCEEEEEEEEEEccccCCcccccccCCceEEEecCccchhHHHHHHHhcCcccCCC
Confidence            57788999999999999999999999999999943   23467777777788999999999999999999842     56


Q ss_pred             CCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhh
Q 029579           99 SANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGA  178 (191)
Q Consensus        99 ~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~  178 (191)
                      +|+|++  +++|++||       .++++.|+|+|||++||..+++|+++||++|+|||||+.++++.++||||+++|+..
T Consensus        97 sDtevl--l~~~~~~g-------~~~~~~l~G~fa~~i~d~~~~~l~~aRD~~G~kPLyy~~~~~g~~~fsSE~k~L~~~  167 (192)
T d1ct9a2          97 SDCEVI--LALYQEKG-------PEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPV  167 (192)
T ss_dssp             CTTHHH--HHHHHHHT-------TTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTT
T ss_pred             CcHHHH--HHHhhhcc-------hhhhhhhhhheEEEEEecCcceeEEEEccccceeEEEEEecCcEEEEEeCHHHHHHh
Confidence            777775  79999998       889999999999999999999999999999999999999756689999999999999


Q ss_pred             ccCcceecCCCCC
Q 029579          179 CGKSLASFPQGGF  191 (191)
Q Consensus       179 ~~~~~~~~ppG~~  191 (191)
                      +. .+++||||||
T Consensus       168 ~~-~i~~~~pG~~  179 (192)
T d1ct9a2         168 CR-TIKEFPAGSY  179 (192)
T ss_dssp             CS-EEEECCTTEE
T ss_pred             hC-CeEEcCCccE
Confidence            85 5999999996
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} Back     information, alignment and structure