Citrus Sinensis ID: 029586

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVKHLIIRYLRHLQLV
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEccccccEcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvlnmtnnkriDTVLLERIVLDmegrtsiiesescrtthnlnrtnntcakdlpvesvhvsspeesimgrSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYqgsdlwkdrdrfkrFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVKHLIIRYLRHLQLV
Flexible Loop (DISEMBL)
mvlnmtnnkridtvLLERIVLDmegrtsiiesescrtthnlnrtnntcakdlpvesvhvsspeesIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSyqgsdlwkdrdRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVKHLIIRYLRHLQLV
Low Complexity Region (SEG)
MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCrtthnlnrtnntCAKDLpvesvhvsspeesIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVKHLIIRYLRHLQLV
Disordered region (IsUnstruct)
*********RIDTVLLERIVLDMEGRTSIIE********************************************LMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEIS******RELFAAEMHLKNVLKQVKHLIIRYLRHL***
Disordered Region (DISOPRED)
*******NKRIDTVLLERIVLDM****************************************************LMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEIS********LFAAEMHLKNVLKQVKHLIIRYLRHLQLV
Disordered Region (DISEMBL)
MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVE**********IMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVKHLIIRYLRHLQLV
Disordered Region (DISPRO)
MVLNMTNNKRIDTVLLERIVLDMEGR******************************************RSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVKHLIIRYLRHLQLV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVKHLIIRYLRHLQLV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
255571269	891	conserved hypothetical protein [Ricinus	0.900	0.193	0.648	5e-58
359480921	909	PREDICTED: tetratricopeptide repeat prot	0.858	0.180	0.604	3e-53
296084812	904	unnamed protein product [Vitis vinifera]	0.832	0.175	0.601	3e-51
147857479	851	hypothetical protein VITISV_000768 [Viti	0.952	0.213	0.515	3e-50
224077388	718	predicted protein [Populus trichocarpa]	0.921	0.245	0.585	1e-49
297807747	892	tetratricopeptide repeat-containing prot	0.842	0.180	0.522	2e-44
15237943	899	tetratricopeptide repeat-containing prot	0.848	0.180	0.528	2e-44
356507408	910	PREDICTED: tetratricopeptide repeat prot	0.931	0.195	0.530	7e-43
449468426	897	PREDICTED: tetratricopeptide repeat prot	0.795	0.169	0.522	1e-42
449516270	482	PREDICTED: LOW QUALITY PROTEIN: tetratri	0.795	0.315	0.522	3e-42

>gi|255571269|ref|XP_002526584.1| conserved hypothetical protein [Ricinus communis] gi|223534078|gb|EEF35796.1| conserved hypothetical protein [Ricinus communis]

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 116/179 (64%), Positives = 138/179 (77%), Gaps = 7/179 (3%)

Query: 1   MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
           MVL++T+ K++D  LLERI+L++EGR S   S     T + N TN TC  D   +S    
Sbjct: 679 MVLHITSCKQVDADLLERIMLEIEGRASSRHSIYLPATGDTNSTNQTCFDDSQNDS---- 734

Query: 61  SPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQ 120
              E   G SRE E L+E  GKILQQ+++S+S AD+WGLYARW K KGDLTMCSEALLKQ
Sbjct: 735 ---EVQAGWSRETEQLVELFGKILQQIIKSDSRADIWGLYARWHKIKGDLTMCSEALLKQ 791

Query: 121 VRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVKH 179
           VRSYQGSDLWKDRDRFK+F++ASLELCKVYMEISSS+GSRRELFAAEMHLKN +KQ K+
Sbjct: 792 VRSYQGSDLWKDRDRFKKFAHASLELCKVYMEISSSTGSRRELFAAEMHLKNTVKQAKY 850

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480921|ref|XP_002268108.2| PREDICTED: tetratricopeptide repeat protein 27 homolog [Vitis vinifera]

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/182 (60%), Positives = 135/182 (74%), Gaps = 18/182 (9%)

Query: 1   MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
           MVL++TNNKRID+ LLERI L+ME RTS     S    ++ N     C K          
Sbjct: 717 MVLDLTNNKRIDSELLERITLEMEKRTSTRHPVSPEAANDDN-----CTK---------- 761

Query: 61  SPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQ 120
              +S +G S E E+L+E LGK+LQ++VRS   AD+WGLYARW K KGDLTMCSEALLKQ
Sbjct: 762 ---KSRVGISWETENLVEMLGKVLQKIVRSGGRADIWGLYARWHKLKGDLTMCSEALLKQ 818

Query: 121 VRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVKHL 180
           VRSYQGSD+WKDRDRFK+F++ASLELC VYMEISSS+GS REL AAEMHLKN++KQ ++ 
Sbjct: 819 VRSYQGSDMWKDRDRFKKFAHASLELCNVYMEISSSTGSHRELLAAEMHLKNIVKQARYY 878

Query: 181 II 182
           ++
Sbjct: 879 LL 880

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084812|emb|CBI27694.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/178 (60%), Positives = 128/178 (71%), Gaps = 19/178 (10%)

Query: 1   MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
           MVL++TNNKRID+ LLERI L+ME RTS     S    ++ N T +T   D  V      
Sbjct: 717 MVLDLTNNKRIDSELLERITLEMEKRTSTRHPVSPEAANDDNCTKSTHPSDSNVI----- 771

Query: 61  SPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQ 120
                         H++E LGK+LQ++VRS   AD+WGLYARW K KGDLTMCSEALLKQ
Sbjct: 772 --------------HVVEMLGKVLQKIVRSGGRADIWGLYARWHKLKGDLTMCSEALLKQ 817

Query: 121 VRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVK 178
           VRSYQGSD+WKDRDRFK+F++ASLELC VYMEISSS+GS REL AAEMHLKN++KQ +
Sbjct: 818 VRSYQGSDMWKDRDRFKKFAHASLELCNVYMEISSSTGSHRELLAAEMHLKNIVKQAE 875

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857479|emb|CAN80781.1| hypothetical protein VITISV_000768 [Vitis vinifera]

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 114/221 (51%), Positives = 139/221 (62%), Gaps = 39/221 (17%)

Query: 1   MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
           MVL++TNNKRID+ LLERI L+ME RTS     S    ++ N T +T   D  V  V   
Sbjct: 600 MVLDLTNNKRIDSELLERITLEMEKRTSTRHPVSPEAANDDNCTKSTHPSDSNVIHVGDL 659

Query: 61  SPEESIMGRSRENEHLMEFLGKILQQ---------------------------------- 86
              ES +G S E E+L+E LGK+LQ+                                  
Sbjct: 660 MSSESRVGISWETENLVEMLGKVLQKKQTYDRVYFCLLGNDKMKTTHLQGWFTIRGIFHS 719

Query: 87  -----VVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSY 141
                +VRS   AD+WGLYARW K KGDLTMCSEALLKQVRSYQGSD+WKDRDRFK+F++
Sbjct: 720 TKHIXIVRSGGRADIWGLYARWHKLKGDLTMCSEALLKQVRSYQGSDMWKDRDRFKKFAH 779

Query: 142 ASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVKHLII 182
           ASLELC VYMEISSS+GS REL AAEMHLKN++KQ ++ ++
Sbjct: 780 ASLELCNVYMEISSSTGSHRELLAAEMHLKNIVKQARYYLL 820

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077388|ref|XP_002305241.1| predicted protein [Populus trichocarpa] gi|222848205|gb|EEE85752.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/181 (58%), Positives = 132/181 (72%), Gaps = 5/181 (2%)

Query: 1   MVLNMTNNK----RIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVES 56
           MVLN+T+ K     ID  +LERI+L++E R S    +    + + + T   C  D   +S
Sbjct: 514 MVLNITSGKATGKEIDADILERIMLEIEERISRRPFKPPSVSDDTSLTTQHCPDDSHNDS 573

Query: 57  VHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEA 116
           ++  S +   +GRSRE E L++ LGKILQQ+V+  S AD+WGLYARW K KGDLTMCSEA
Sbjct: 574 IN-KSEQRIAVGRSRETEQLVDLLGKILQQIVKRVSRADIWGLYARWHKLKGDLTMCSEA 632

Query: 117 LLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQ 176
           LLKQVRSYQGSDLWKDRDRFK ++ ASLELCKVYMEISSS+GS REL  AEMHLKN+++Q
Sbjct: 633 LLKQVRSYQGSDLWKDRDRFKLYARASLELCKVYMEISSSTGSHRELSTAEMHLKNIVRQ 692

Query: 177 V 177
            
Sbjct: 693 A 693

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807747|ref|XP_002871757.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317594|gb|EFH48016.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 123/176 (69%), Gaps = 15/176 (8%)

Query: 2   VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSS 61
           +L M+ NKRID VLL+RI+ ++E R S  +S S   T                 S   S+
Sbjct: 696 ILKMSKNKRIDVVLLDRIMTELENRNSACKSSSSIETE---------------ASSDEST 740

Query: 62  PEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQV 121
             +       E +  +E LGKI+QQ+V++ES++++WGLYARW + KGDL +CSEALLKQV
Sbjct: 741 ETKPCTATPAETQRHLELLGKIIQQIVKTESTSEIWGLYARWSRIKGDLMVCSEALLKQV 800

Query: 122 RSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQV 177
           RSYQGS++WKD++RFK F+ ASLELC+VYMEIS S+GS+RELF+AEMHLKN +KQ 
Sbjct: 801 RSYQGSEVWKDKERFKNFARASLELCRVYMEISVSTGSKRELFSAEMHLKNTIKQA 856

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237943|ref|NP_197229.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|10177072|dbj|BAB10514.1| unnamed protein product [Arabidopsis thaliana] gi|332005024|gb|AED92407.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/176 (52%), Positives = 128/176 (72%), Gaps = 14/176 (7%)

Query: 2   VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSS 61
           +L M+ NKR+D VLL+RI+ ++E R S  +S S  T    +   +T  K         ++
Sbjct: 702 ILKMSKNKRVDVVLLDRIMTELEKRNSACKSSSSSTETEASSDESTETKPC------TAT 755

Query: 62  PEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQV 121
           P E+        +  +E LGK++QQ+V++ES+A++WGLYARW + KGDLT+CSEALLKQV
Sbjct: 756 PAET--------QRQLELLGKVIQQIVKTESTAEIWGLYARWSRIKGDLTVCSEALLKQV 807

Query: 122 RSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQV 177
           RSYQGS++WKD++RFK+F+ ASLELC+VYMEIS+S GS+RELF AEMHLKN +KQ 
Sbjct: 808 RSYQGSEVWKDKERFKKFARASLELCRVYMEISASIGSKRELFTAEMHLKNTIKQA 863

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507408|ref|XP_003522459.1| PREDICTED: tetratricopeptide repeat protein 27 homolog [Glycine max]

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 96/181 (53%), Positives = 125/181 (69%), Gaps = 3/181 (1%)

Query: 1   MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
           M+L+M+NNKR+D  LLERI  ++E + S        T  N  +T+  C  D   +     
Sbjct: 702 MILDMSNNKRVDCELLERITREVEKKLSTSNVPQLVTDDNKPKTDQLCIVDSGSKYQEQV 761

Query: 61  SPEESIMGRSRENEHLMEFLGKILQQVVRSESS--ADMWGLYARWLKNKGDLTMCSEALL 118
           S   SI GRSRE E L+  LGK+LQQ+++S S    ++WGLYA+W +  GDL MCSEALL
Sbjct: 762 SGV-SIAGRSRETEQLLLLLGKVLQQIIKSGSGCGPEIWGLYAKWHRINGDLMMCSEALL 820

Query: 119 KQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVK 178
           KQVRS QGSD WKDRDRFK+F+ ASLELC+VY+EI SS+GS ++L  AEMHLKNV++Q +
Sbjct: 821 KQVRSLQGSDTWKDRDRFKKFAKASLELCQVYVEIFSSAGSIKQLTTAEMHLKNVIRQAR 880

Query: 179 H 179
            
Sbjct: 881 Q 881

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468426|ref|XP_004151922.1| PREDICTED: tetratricopeptide repeat protein 27 homolog [Cucumis sativus]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 121/176 (68%), Gaps = 24/176 (13%)

Query: 2   VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSS 61
           V +MTNNKR+D  LLERI+ ++E           R   N +  ++    DL VE      
Sbjct: 715 VTDMTNNKRVDAELLERIMQEVE-----------RRASNSHSESHHHEADLVVE------ 757

Query: 62  PEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQV 121
                  ++RE +H++E +GK+L Q+VR  + AD+WG+YARW K KGD TMCSEALLKQV
Sbjct: 758 -------KNRETDHMVELIGKVLHQIVRGGTGADIWGIYARWHKIKGDFTMCSEALLKQV 810

Query: 122 RSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQV 177
           RSYQGSDLWKDR++F +F+ ASLEL +VYM ISS++ S+REL+AAEMHLKN +KQ 
Sbjct: 811 RSYQGSDLWKDREKFLKFAQASLELSRVYMHISSTANSQRELYAAEMHLKNTVKQA 866

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516270|ref|XP_004165170.1| PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 27 homolog, partial [Cucumis sativus]

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 120/176 (68%), Gaps = 24/176 (13%)

Query: 2   VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSS 61
           V +MTNNKR+D  LLERI+ ++E R S   SES     +L                    
Sbjct: 300 VTDMTNNKRVDAELLERIMQEVERRASNSHSESHHHEADL-------------------- 339

Query: 62  PEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQV 121
               ++ + RE +H++E +GK+L Q+VR  + AD+WG+YARW K KGD TMCSEALLKQV
Sbjct: 340 ----VVEKXRETDHMVELIGKVLHQIVRGGTGADIWGIYARWHKIKGDFTMCSEALLKQV 395

Query: 122 RSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQV 177
           RSYQGSDLWKDR++F +F+ ASLEL +VYM ISS++ S+REL+AAEMHLKN +KQ 
Sbjct: 396 RSYQGSDLWKDREKFLKFAQASLELSRVYMHISSTANSQRELYAAEMHLKNTVKQA 451

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
TAIR|locus:2167165	899	AT5G17270 [Arabidopsis thalian	0.910	0.193	0.494	3.8e-42
TAIR|locus:2166153	877	AT5G37130 [Arabidopsis thalian	0.534	0.116	0.647	7.1e-38

TAIR|locus:2167165 AT5G17270 [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 3.8e-42, P = 3.8e-42
 Identities = 94/190 (49%), Positives = 126/190 (66%)

Query:     2 VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCXXXXXXXXXXXXCAKDLXXXXXXXXX 61
             +L M+ NKR+D VLL+RI+ ++E R S  +S S               K           
Sbjct:   702 ILKMSKNKRVDVVLLDRIMTELEKRNSACKSSSSSTETEASSDESTETKPCTATPA---- 757

Query:    62 XXXXIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQV 121
                       E +  +E LGK++QQ+V++ES+A++WGLYARW + KGDLT+CSEALLKQV
Sbjct:   758 ----------ETQRQLELLGKVIQQIVKTESTAEIWGLYARWSRIKGDLTVCSEALLKQV 807

Query:   122 RSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQ--VKH 179
             RSYQGS++WKD++RFK+F+ ASLELC+VYMEIS+S GS+RELF AEMHLKN +KQ  V  
Sbjct:   808 RSYQGSEVWKDKERFKKFARASLELCRVYMEISASIGSKRELFTAEMHLKNTIKQATVSF 867

Query:   180 LIIRYLRHLQ 189
             L    L+ L+
Sbjct:   868 LDSEELKELE 877

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2166153 AT5G37130 [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 7.1e-38, Sum P(2) = 7.1e-38
 Identities = 66/102 (64%), Positives = 88/102 (86%)

Query:    77 MEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRF 136
             +E  GKI+QQ+V++ES+ + WGLYARW +  GDLT+CSEALLKQVRSY G ++WKD++RF
Sbjct:   742 IELFGKIIQQIVKTESTFENWGLYARWSRINGDLTICSEALLKQVRSYLGVEMWKDKERF 801

Query:   137 KRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQVK 178
             K+F+ ASLELC+VY+EIS+S  S+RELF+AEMHLKN +KQ +
Sbjct:   802 KKFARASLELCRVYIEISASVESKRELFSAEMHLKNTIKQAR 843

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048046 "apoplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003656001 SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (871 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.44

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.44  E-value=2.6e-13  Score=131.98  Aligned_cols=143  Identities=31%  Similarity=0.418  Sum_probs=123.0

Q ss_pred             ceecCCCccccHHHHHHHHHHHhccccccccccccccCCCCcCCCccCCCCCcccccCCCccccccccchhhhHHHHHHH
Q 029586            2 VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLG   81 (191)
Q Consensus         2 Vl~lS~nKr~d~~LLerI~~evE~r~~~~~~~~~~~~~d~~~t~~~~~~D~~~~~~~~~~~~~~~~g~~re~~qL~e~lG   81 (191)
                      .++|..+++.|.+++..|++.+|+..    +.+                            +.+.++..++..   |.+|
T Consensus       613 ll~~~~~~~d~~vl~~iv~~~~~~~~----d~s----------------------------~de~~~~k~~~k---elmg  657 (777)
T KOG1128|consen  613 LLDLRKKYKDDEVLLIIVRTVLEGMT----DES----------------------------GDEATGLKGKLK---ELLG  657 (777)
T ss_pred             HHHhhhhcccchhhHHHHHHHHhhcc----ccc----------------------------cchhhhhhHHHH---HHHH
Confidence            46788889999999999999999986    111                            011122222233   9999


Q ss_pred             HHHHHHHhccCcchhhh-HHHHHHHhhCChh-hhhHHHHHHhhhhcCCcccc-chHHHHHHHHHHHHHHHHHHHHhcCCC
Q 029586           82 KILQQVVRSESSADMWG-LYARWLKNKGDLT-MCSEALLKQVRSYQGSDLWK-DRDRFKRFSYASLELCKVYMEISSSSG  158 (191)
Q Consensus        82 kiLqQiv~S~~~adiWg-L~Arw~~~~Gd~~-~csEA~LKQVRslqgS~~~k-D~~rF~~yA~ASl~lCr~y~e~~~s~G  158 (191)
                      ++++|+++|+.+..+|+ +|++|...+++-. .|.++..|+++..+|+..|+ |.+.|+++.++++.||.+|+|+....+
T Consensus       658 ~~~~qv~~s~~~wrL~a~l~~~~~~ek~~~~eka~~~l~k~~~~~s~~~~w~~d~~~~~~~v~~a~~l~~v~~e~~~~i~  737 (777)
T KOG1128|consen  658 KVLSQVTNSPETWRLYALLYGNGSSEKLDENEKAYRALSKAYKCDTGSNVWEKDITLFKEVVQAALGLAHVAIECSKNIS  737 (777)
T ss_pred             HHHHHHhCchhhhHhHhhhccccchhcccccHHHHhhhhhCccccccccCCccchhHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            99999999888889999 8899999998888 99999999999999999888 999999999999999999999999999


Q ss_pred             chhh-HHHHHHHHHHHHHHHHH
Q 029586          159 SRRE-LFAAEMHLKNVLKQVKH  179 (191)
Q Consensus       159 s~re-L~~A~MHLk~~lKqa~~  179 (191)
                      +.+| ++++|||||+.+++++-
T Consensus       738 s~~e~~~t~rl~Lk~~~~~~~~  759 (777)
T KOG1128|consen  738 SSQEMLSTVRLNLKGLLSKAKV  759 (777)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc
Confidence            9999 99999999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 9e-04
 Identities = 33/249 (13%), Positives = 79/249 (31%), Gaps = 63/249 (25%)

Query: 3   LNMTNNKRIDTVL--LERIVLDMEGRTSIIESESCRTTHNLNRTNNT-----CAKDLPVE 55
           LN+ N    +TVL  L++++  ++   +     S      ++           +K     
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-N 245

Query: 56  SV----HVSSPE--ESIMGRSR-----ENEHLMEFLGKILQQVVRSE------SSADMWG 98
            +    +V + +   +     +       + + +FL       +  +      +  ++  
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 99  LYARWLKNK-GDL--TMCSEALL------KQVRSYQG-SDLWK--DRDRFKRF---SYAS 143
           L  ++L  +  DL   + +          + +R      D WK  + D+       S   
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 144 L---ELCKVYMEIS------------------SSSGSRRELFAAEMHLKNVL-KQVKHLI 181
           L   E  K++  +S                      S   +   ++H  +++ KQ K   
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 182 IRYLRHLQL 190
           I  +  + L
Sbjct: 426 I-SIPSIYL 433

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00