Citrus Sinensis ID: 029591

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
MLPYICYLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ
ccccHHHHccccEEEEEEEEEEEEEcccccHHHHHHHccccEEcccccEEEEEEEccccEEEEEEEccEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEccccccHHHHHHHccccccccccccccEEEEEccccEEEEEEcccEEEEEccccHHHHHHHHHHHHHHHHHHHcccc
ccccccccccccccEEEEEEEEEEccccccHHHHHHHcccEEEEcccEEEEEEEEccccEEEEEccccEEEEEEEccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEEccccEcHHHHHHHccccEEccccccccEEEEEccccEEEEEccccEEEEEEEccHHHHHHHHHHHHHHHHHHEcccc
MLPYICYLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKlgfpakfkdfkiqnivgscdvkfpirleglayshgafssyepelfpgliyrmkqpKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ
MLPYICYLILGAVSSVKNIVSTVNLDCKLDLKKIALqarnaeynpkrFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ
MLPYICYLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ
**PYICYLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK*****KLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF*****
*******LILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK***
MLPYICYLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMV*************ARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ
*****C*LILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLPYICYLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query191 2.2.26 [Sep-21-2011]
Q8W0W4203 TATA-binding protein 2 OS yes no 0.947 0.891 0.955 3e-98
P26357200 TATA-box-binding protein N/A no 0.947 0.905 0.955 2e-97
P50159200 TATA-box-binding protein N/A no 0.947 0.905 0.944 3e-97
Q42808200 TATA-box-binding protein yes no 0.947 0.905 0.950 3e-97
P50158200 TATA-box-binding protein N/A no 0.947 0.905 0.950 4e-97
P48511200 TATA-box-binding protein N/A no 0.947 0.905 0.950 5e-97
Q02879201 TATA-box-binding protein N/A no 0.947 0.900 0.933 1e-96
P93348200 TATA-box-binding protein N/A no 0.947 0.905 0.944 6e-96
P28148200 TATA-box-binding protein yes no 0.947 0.905 0.922 8e-94
P28147200 TATA-box-binding protein no no 0.947 0.905 0.911 3e-93
>sp|Q8W0W4|TBP2_ORYSJ TATA-binding protein 2 OS=Oryza sativa subsp. japonica GN=TBP2 PE=1 SV=2 Back     alignment and function desciption
 Score =  357 bits (915), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 173/181 (95%), Positives = 178/181 (98%)

Query: 11  GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 70
           G + +++NIVSTVNLDCKLDLK IALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM
Sbjct: 23  GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 82

Query: 71  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 130
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 83  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 142

Query: 131 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 190
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRKVQ
Sbjct: 143 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKVQ 202

Query: 191 Q 191
           Q
Sbjct: 203 Q 203
General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|P26357|TBP_SOLTU TATA-box-binding protein OS=Solanum tuberosum GN=TBP PE=2 SV=1 Back     alignment and function description
>sp|P50159|TBP2_MAIZE TATA-box-binding protein 2 OS=Zea mays GN=TBP2 PE=2 SV=1 Back     alignment and function description
>sp|Q42808|TBP_SOYBN TATA-box-binding protein OS=Glycine max GN=TBP1 PE=2 SV=1 Back     alignment and function description
>sp|P50158|TBP1_MAIZE TATA-box-binding protein 1 OS=Zea mays GN=TBP1 PE=2 SV=1 Back     alignment and function description
>sp|P48511|TBP_MESCR TATA-box-binding protein OS=Mesembryanthemum crystallinum PE=2 SV=1 Back     alignment and function description
>sp|Q02879|TBP2_WHEAT TATA-box-binding protein 2 OS=Triticum aestivum GN=TBP2 PE=2 SV=1 Back     alignment and function description
>sp|P93348|TBP_TOBAC TATA-box-binding protein OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P28148|TBP2_ARATH TATA-box-binding protein 2 OS=Arabidopsis thaliana GN=TBP2 PE=1 SV=1 Back     alignment and function description
>sp|P28147|TBP1_ARATH TATA-box-binding protein 1 OS=Arabidopsis thaliana GN=TBP1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query191
255568956201 TATA-box binding protein, putative [Rici 0.947 0.900 0.966 3e-97
218193429190 hypothetical protein OsI_12863 [Oryza sa 0.968 0.973 0.941 5e-97
115454423203 Os03g0657000 [Oryza sativa Japonica Grou 0.947 0.891 0.955 2e-96
222625492207 hypothetical protein OsJ_11965 [Oryza sa 0.947 0.874 0.955 2e-96
242084298200 hypothetical protein SORBIDRAFT_08g02227 0.947 0.905 0.955 3e-96
357119735200 PREDICTED: TATA-box-binding protein 2-li 0.947 0.905 0.950 4e-96
242038657200 hypothetical protein SORBIDRAFT_01g01288 0.947 0.905 0.955 5e-96
224285248200 unknown [Picea sitchensis] 0.947 0.905 0.944 6e-96
4102725200 TATA-box binding protein [Phaseolus vulg 0.947 0.905 0.955 6e-96
4102723200 TATA-box binding protein [Phaseolus vulg 0.947 0.905 0.955 7e-96
>gi|255568956|ref|XP_002525448.1| TATA-box binding protein, putative [Ricinus communis] gi|223535261|gb|EEF36938.1| TATA-box binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 175/181 (96%), Positives = 179/181 (98%)

Query: 11  GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 70
           G V +++NIVSTVNLDCKLDLK+IALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM
Sbjct: 21  GIVPTLQNIVSTVNLDCKLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 80

Query: 71  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 130
           VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 81  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 140

Query: 131 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 190
           FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ
Sbjct: 141 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 200

Query: 191 Q 191
           Q
Sbjct: 201 Q 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|218193429|gb|EEC75856.1| hypothetical protein OsI_12863 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115454423|ref|NP_001050812.1| Os03g0657000 [Oryza sativa Japonica Group] gi|73919858|sp|Q8W0W4.2|TBP2_ORYSJ RecName: Full=TATA-binding protein 2; AltName: Full=TATA sequence-binding protein 2; Short=TBP-2; AltName: Full=TATA-binding factor 2; AltName: Full=TATA-box factor 2; AltName: Full=Transcription initiation factor TFIID TBP-2 subunit gi|31415973|gb|AAP50993.1| TATA-binding protein TBP2 [Oryza sativa Japonica Group] gi|108710181|gb|ABF97976.1| TATA-binding protein 2, putative, expressed [Oryza sativa Japonica Group] gi|113549283|dbj|BAF12726.1| Os03g0657000 [Oryza sativa Japonica Group] gi|215686467|dbj|BAG87728.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|222625492|gb|EEE59624.1| hypothetical protein OsJ_11965 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|242084298|ref|XP_002442574.1| hypothetical protein SORBIDRAFT_08g022273 [Sorghum bicolor] gi|241943267|gb|EES16412.1| hypothetical protein SORBIDRAFT_08g022273 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357119735|ref|XP_003561589.1| PREDICTED: TATA-box-binding protein 2-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242038657|ref|XP_002466723.1| hypothetical protein SORBIDRAFT_01g012880 [Sorghum bicolor] gi|241920577|gb|EER93721.1| hypothetical protein SORBIDRAFT_01g012880 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|224285248|gb|ACN40350.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|4102725|gb|AAD10238.1| TATA-box binding protein [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|4102723|gb|AAD10237.1| TATA-box binding protein [Phaseolus vulgaris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query191
TAIR|locus:2193904200 TBP2 "TATA binding protein 2" 0.947 0.905 0.922 2.1e-84
TAIR|locus:2092905200 TBP1 "TATA binding protein 1" 0.947 0.905 0.911 5.6e-84
POMBASE|SPAC29E6.08231 tbp1 "TATA-binding protein (TB 0.942 0.779 0.833 1.3e-75
ZFIN|ZDB-GENE-030616-563302 tbp "TATA box binding protein" 0.931 0.589 0.820 7.3e-75
UNIPROTKB|O13270302 TBP "TATA-box-binding protein" 0.931 0.589 0.820 9.3e-75
UNIPROTKB|Q6JLB1302 TBP "TATA-binding protein" [Ga 0.931 0.589 0.820 9.3e-75
UNIPROTKB|Q2HJ52319 TBP "TATA-box-binding protein" 0.931 0.557 0.820 9.3e-75
UNIPROTKB|F1PQA5324 TBP "Uncharacterized protein" 0.931 0.549 0.820 9.3e-75
UNIPROTKB|P20226339 TBP "TATA-box-binding protein" 0.931 0.525 0.820 9.3e-75
UNIPROTKB|P27633297 tbp "TATA-box-binding protein" 0.931 0.599 0.820 9.3e-75
TAIR|locus:2193904 TBP2 "TATA binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
 Identities = 167/181 (92%), Positives = 173/181 (95%)

Query:    11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 70
             G V +++NIVSTVNLDCKLDLK IALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM
Sbjct:    20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79

Query:    71 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 130
             VCTGAKSE  SKLAARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct:    80 VCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSA 139

Query:   131 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 190
             FSSYEPELFPGLIYRMK PKIVLLIFVSGKIVITGAK+R+ETYTAFENIYPVL EFRKVQ
Sbjct:   140 FSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLREFRKVQ 199

Query:   191 Q 191
             Q
Sbjct:   200 Q 200
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;TAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA
GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA
GO:0017025 "TBP-class protein binding" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2092905 TBP1 "TATA binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC29E6.08 tbp1 "TATA-binding protein (TBP)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-563 tbp "TATA box binding protein" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O13270 TBP "TATA-box-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6JLB1 TBP "TATA-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJ52 TBP "TATA-box-binding protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQA5 TBP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P20226 TBP "TATA-box-binding protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P27633 tbp "TATA-box-binding protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P13393TBP_YEASTNo assigned EC number0.82680.93710.7458yesno
P28148TBP2_ARATHNo assigned EC number0.92260.94760.905yesno
P50159TBP2_MAIZENo assigned EC number0.94470.94760.905N/Ano
P50158TBP1_MAIZENo assigned EC number0.95020.94760.905N/Ano
Q28GG8TBP_XENTRNo assigned EC number0.81560.93710.6026yesno
P91809TBP_STRPUNo assigned EC number0.79320.93710.6754yesno
O43133TBP_CANALNo assigned EC number0.83520.92140.7394N/Ano
P26356TBP1_WHEATNo assigned EC number0.89500.94760.7768N/Ano
P26357TBP_SOLTUNo assigned EC number0.95580.94760.905N/Ano
P26354TBP_ACACANo assigned EC number0.84350.93710.6937N/Ano
P26355TBP_DICDINo assigned EC number0.77220.94240.8780yesno
P46272TBP_ACECLNo assigned EC number0.79770.93190.9319N/Ano
O17488TBP_ARTSFNo assigned EC number0.81460.93190.6472N/Ano
C4M7H7TBP2_ENTHINo assigned EC number0.58470.89520.8066N/Ano
Q42808TBP_SOYBNNo assigned EC number0.95020.94760.905yesno
A6H907TBPL2_PANTRNo assigned EC number0.81560.93710.4760yesno
P93348TBP_TOBACNo assigned EC number0.94470.94760.905N/Ano
P32085TBP_CAEELNo assigned EC number0.74130.91090.5117yesno
P27633TBP_XENLANo assigned EC number0.81560.93710.6026N/Ano
P29037TBP_MOUSENo assigned EC number0.81560.93710.5664yesno
P28147TBP1_ARATHNo assigned EC number0.91160.94760.905nono
O13270TBP_CHICKNo assigned EC number0.81560.93710.5927yesno
Q8W0W4TBP2_ORYSJNo assigned EC number0.95580.94760.8916yesno
Q27850TBP_TETTHNo assigned EC number0.72250.90570.7032N/Ano
Q12731TBP_EMENINo assigned EC number0.83790.93710.6679yesno
P17871TBP_SCHPONo assigned EC number0.83330.94240.7792yesno
Q2HJ52TBP_BOVINNo assigned EC number0.81560.93710.5611yesno
P48511TBP_MESCRNo assigned EC number0.95020.94760.905N/Ano
P20226TBP_HUMANNo assigned EC number0.81560.93710.5280yesno
P20227TBP_DROMENo assigned EC number0.80890.93190.5042yesno
Q02879TBP2_WHEATNo assigned EC number0.93370.94760.9004N/Ano
Q7SXL3TBP_DANRENo assigned EC number0.81560.93710.5927yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Sb08g022273.1
hypothetical protein (200 aa)
(Sorghum bicolor)
Predicted Functional Partners:
Sb02g031020.1
hypothetical protein (312 aa)
  • ••• 0.880
Sb09g027310.1
hypothetical protein (311 aa)
  • • • 0.689
Sb02g007163.1
hypothetical protein (169 aa)
  •     0.492
Sb03g037645.1
hypothetical protein (111 aa)
  •     0.454
Sb02g039140.1
hypothetical protein (218 aa)
  •     0.441
Sb04g022850.1
hypothetical protein (129 aa)
  •     0.426

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
PLN00062179 PLN00062, PLN00062, TATA-box-binding protein; Prov 1e-132
cd04516174 cd04516, TBP_eukaryotes, eukaryotic TATA box bindi 1e-124
cd00652174 cd00652, TBP_TLF, TATA box binding protein (TBP): 1e-109
COG2101185 COG2101, SPT15, TATA-box binding protein (TBP), co 5e-85
cd04517174 cd04517, TLF, TBP-like factors (TLF; also called T 5e-62
PRK00394179 PRK00394, PRK00394, transcription factor; Reviewed 8e-60
cd04518174 cd04518, TBP_archaea, archaeal TATA box binding pr 2e-55
pfam0035286 pfam00352, TBP, Transcription factor TFIID (or TAT 3e-41
pfam0035286 pfam00352, TBP, Transcription factor TFIID (or TAT 7e-41
cd04518174 cd04518, TBP_archaea, archaeal TATA box binding pr 6e-22
PRK00394179 PRK00394, PRK00394, transcription factor; Reviewed 7e-22
PRK00394179 PRK00394, PRK00394, transcription factor; Reviewed 1e-19
COG2101185 COG2101, SPT15, TATA-box binding protein (TBP), co 3e-19
COG2101185 COG2101, SPT15, TATA-box binding protein (TBP), co 3e-17
cd04518174 cd04518, TBP_archaea, archaeal TATA box binding pr 2e-15
cd00652174 cd00652, TBP_TLF, TATA box binding protein (TBP): 2e-14
>gnl|CDD|177693 PLN00062, PLN00062, TATA-box-binding protein; Provisional Back     alignment and domain information 
 Score =  367 bits (944), Expect = e-132
 Identities = 169/179 (94%), Positives = 174/179 (97%)

Query: 13  VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVC 72
           V +++NIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVC
Sbjct: 1   VPTLQNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVC 60

Query: 73  TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 132
           TGAKSE  SKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAY+HGAFS
Sbjct: 61  TGAKSEHDSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYAHGAFS 120

Query: 133 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 191
           SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR+E YTAFENIYPVLTEFRK QQ
Sbjct: 121 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVREEIYTAFENIYPVLTEFRKRQQ 179

Length = 179
>gnl|CDD|239952 cd04516, TBP_eukaryotes, eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|238352 cd00652, TBP_TLF, TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|225012 COG2101, SPT15, TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>gnl|CDD|239953 cd04517, TLF, TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans Back     alignment and domain information
>gnl|CDD|234746 PRK00394, PRK00394, transcription factor; Reviewed Back     alignment and domain information
>gnl|CDD|239954 cd04518, TBP_archaea, archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|201174 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, TBP) Back     alignment and domain information
>gnl|CDD|201174 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, TBP) Back     alignment and domain information
>gnl|CDD|239954 cd04518, TBP_archaea, archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|234746 PRK00394, PRK00394, transcription factor; Reviewed Back     alignment and domain information
>gnl|CDD|234746 PRK00394, PRK00394, transcription factor; Reviewed Back     alignment and domain information
>gnl|CDD|225012 COG2101, SPT15, TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>gnl|CDD|225012 COG2101, SPT15, TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>gnl|CDD|239954 cd04518, TBP_archaea, archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|238352 cd00652, TBP_TLF, TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 191
PLN00062179 TATA-box-binding protein; Provisional 100.0
cd04516174 TBP_eukaryotes eukaryotic TATA box binding protein 100.0
COG2101185 SPT15 TATA-box binding protein (TBP), component of 100.0
KOG3302200 consensus TATA-box binding protein (TBP), componen 100.0
PRK00394179 transcription factor; Reviewed 100.0
cd00652174 TBP_TLF TATA box binding protein (TBP): Present in 100.0
cd04518174 TBP_archaea archaeal TATA box binding protein (TBP 100.0
cd04517174 TLF TBP-like factors (TLF; also called TLP, TRF, T 100.0
PF0035286 TBP: Transcription factor TFIID (or TATA-binding p 99.97
PF0035286 TBP: Transcription factor TFIID (or TATA-binding p 99.97
COG2101185 SPT15 TATA-box binding protein (TBP), component of 99.96
PRK00394179 transcription factor; Reviewed 99.96
cd04518174 TBP_archaea archaeal TATA box binding protein (TBP 99.95
cd04516174 TBP_eukaryotes eukaryotic TATA box binding protein 99.94
PLN00062179 TATA-box-binding protein; Provisional 99.94
cd00652174 TBP_TLF TATA box binding protein (TBP): Present in 99.93
cd04517174 TLF TBP-like factors (TLF; also called TLP, TRF, T 99.92
KOG3302200 consensus TATA-box binding protein (TBP), componen 99.84
PF1185881 DUF3378: Domain of unknown function (DUF3378); Int 96.77
COG4871193 Uncharacterized protein conserved in archaea [Func 96.59
PF1185881 DUF3378: Domain of unknown function (DUF3378); Int 95.76
TIGR00716 284 rnhC ribonuclease HIII. Two types of ribonuclease 93.95
COG1039 297 RnhC Ribonuclease HIII [DNA replication, recombina 93.48
PRK00996 304 ribonuclease HIII; Provisional 93.1
COG4871193 Uncharacterized protein conserved in archaea [Func 91.79
PRK00996 304 ribonuclease HIII; Provisional 91.56
COG1039 297 RnhC Ribonuclease HIII [DNA replication, recombina 91.38
TIGR00716 284 rnhC ribonuclease HIII. Two types of ribonuclease 89.55
PRK12475338 thiamine/molybdopterin biosynthesis MoeB-like prot 86.29
TIGR02187215 GlrX_arch Glutaredoxin-like domain protein. This f 85.97
PRK12475338 thiamine/molybdopterin biosynthesis MoeB-like prot 84.92
PRK07688339 thiamine/molybdopterin biosynthesis ThiF/MoeB-like 82.75
>PLN00062 TATA-box-binding protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.3e-68  Score=434.84  Aligned_cols=179  Identities=94%  Similarity=1.387  Sum_probs=175.2

Q ss_pred             eeEEEEEEEEEEcCCccCHHHHHhhCCCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHHHHH
Q 029591           13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARII   92 (191)
Q Consensus        13 ~~~I~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~~~l   92 (191)
                      +|+|+|||||++++++|||++||..++|++||||+|||++||+++|+++++||+||||+||||+|+++++.|+++++++|
T Consensus         1 ~~~I~NvVas~~l~~~idL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L   80 (179)
T PLN00062          1 VPTLQNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARII   80 (179)
T ss_pred             CcEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcccceeEEeEEEEEEcCCccChhHHHHhcCCccccccCCCceeEEEecCCeEEEEEeecceEEEeccCCHHHH
Q 029591           93 QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDET  172 (191)
Q Consensus        93 ~~~g~~~~~~~~~i~Nivat~~l~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~~~~t~lIF~sGkivitGaks~~~~  172 (191)
                      +++|+++++.+|+|+|||||+|++|+|||+.||..+.++++||||+||||+||+.+|+++++||+||||+|||||+++|+
T Consensus        81 ~~lg~~~~~~~f~v~NIvas~~l~~~i~L~~la~~~~~~~~YePE~fPgliyr~~~pk~~~liF~sGkvvitGaks~~~~  160 (179)
T PLN00062         81 QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYAHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVREEI  160 (179)
T ss_pred             HHcCCCcCCCccEEEEEEEEEECCCcccHHHHHHhchhhcccCcccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHHHH
Confidence            99999999999999999999999999999999988878999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccC
Q 029591          173 YTAFENIYPVLTEFRKVQQ  191 (191)
Q Consensus       173 ~~a~~~i~~~L~~~r~~~~  191 (191)
                      ++|++.|+|+|.+||+..|
T Consensus       161 ~~ai~~i~p~L~~~~~~~~  179 (179)
T PLN00062        161 YTAFENIYPVLTEFRKRQQ  179 (179)
T ss_pred             HHHHHHHHHHHHHhccCCC
Confidence            9999999999999998754

>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>PRK00394 transcription factor; Reviewed Back     alignment and domain information
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans Back     alignment and domain information
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ] Back     alignment and domain information
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ] Back     alignment and domain information
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>PRK00394 transcription factor; Reviewed Back     alignment and domain information
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>PLN00062 TATA-box-binding protein; Provisional Back     alignment and domain information
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans Back     alignment and domain information
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3 Back     alignment and domain information
>COG4871 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3 Back     alignment and domain information
>TIGR00716 rnhC ribonuclease HIII Back     alignment and domain information
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00996 ribonuclease HIII; Provisional Back     alignment and domain information
>COG4871 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PRK00996 ribonuclease HIII; Provisional Back     alignment and domain information
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00716 rnhC ribonuclease HIII Back     alignment and domain information
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein Back     alignment and domain information
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
1vok_A200 Arabidopsis Thaliana Tbp (Dimer) Length = 200 2e-94
1vto_A190 1.9 A Resolution Refined Structure Of Tbp Recognizi 3e-94
1vtl_E186 Co-Crystal Structure Of Tbp Recognizing The Minor G 5e-93
1tbp_A180 Crystal Structure Of Yeast Tata-Binding Protein And 2e-84
1rm1_A240 Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex L 2e-84
1ytb_A180 Crystal Structure Of A Yeast TbpTATA-Box Complex Le 3e-84
1jfi_C185 Crystal Structure Of The Nc2-Tbp-Dna Ternary Comple 4e-84
1nvp_A181 Human TfiiaTBPDNA COMPLEX Length = 181 4e-84
1tgh_A185 Tata Binding Protein (Tbp)DNA COMPLEX Length = 185 6e-84
1c9b_B180 Crystal Structure Of A Human Tbp Core Domain-Human 6e-84
1cdw_A179 Human Tbp Core Domain Complexed With Dna Length = 1 2e-83
3oc3_C218 Crystal Structure Of The Mot1 N-Terminal Domain In 9e-79
3eik_A218 Double Stranded Dna Binding Protein Length = 218 9e-79
1mp9_A198 Tbp From A Mesothermophilic Archaeon, Sulfolobus Ac 1e-35
2z8u_A188 Methanococcus Jannaschii Tbp Length = 188 2e-30
1ais_A182 Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA- 9e-29
1d3u_A181 Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+T 9e-29
1pcz_A191 Structure Of Tata-Binding Protein Length = 191 1e-28
>pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp (Dimer) Length = 200 Back     alignment and structure 
Iteration: 1

 Score =  340 bits (872), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 165/181 (91%), Positives = 173/181 (95%)
Query: 11  GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 70
           G V +++NIVSTVNLDCKLDLK IALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM
Sbjct: 20  GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 71  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 130
           VCTGAKSE  SK+AARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 80  VCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAA 139
Query: 131 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 190
           FSSYEPELFPGLIYRMK PKIVLLIFVSGKIVITGAK+RDETY AFENIYPVL+EFRK+Q
Sbjct: 140 FSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKIQ 199
Query: 191 Q 191
           Q
Sbjct: 200 Q 200
>pdb|1VTO|A Chain A, 1.9 A Resolution Refined Structure Of Tbp Recognizing The Minor Groove Of Tataaaag Length = 190 Back     alignment and structure
>pdb|1VTL|E Chain E, Co-Crystal Structure Of Tbp Recognizing The Minor Groove Of A Tata Element Length = 186 Back     alignment and structure
>pdb|1TBP|A Chain A, Crystal Structure Of Yeast Tata-Binding Protein And Model For Interaction With Dna Length = 180 Back     alignment and structure
>pdb|1RM1|A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex Length = 240 Back     alignment and structure
>pdb|1YTB|A Chain A, Crystal Structure Of A Yeast TbpTATA-Box Complex Length = 180 Back     alignment and structure
>pdb|1JFI|C Chain C, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex Length = 185 Back     alignment and structure
>pdb|1NVP|A Chain A, Human TfiiaTBPDNA COMPLEX Length = 181 Back     alignment and structure
>pdb|1TGH|A Chain A, Tata Binding Protein (Tbp)DNA COMPLEX Length = 185 Back     alignment and structure
>pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib Core Domain Complex Bound To An Extended, Modified Adenoviral Major Late Promoter (Admlp) Length = 180 Back     alignment and structure
>pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna Length = 179 Back     alignment and structure
>pdb|3OC3|C Chain C, Crystal Structure Of The Mot1 N-Terminal Domain In Complex With Tbp Length = 218 Back     alignment and structure
>pdb|3EIK|A Chain A, Double Stranded Dna Binding Protein Length = 218 Back     alignment and structure
>pdb|1MP9|A Chain A, Tbp From A Mesothermophilic Archaeon, Sulfolobus Acidocaldarius Length = 198 Back     alignment and structure
>pdb|2Z8U|A Chain A, Methanococcus Jannaschii Tbp Length = 188 Back     alignment and structure
>pdb|1AIS|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box Complex From Pyrococcus Woesei Length = 182 Back     alignment and structure
>pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA- Box Complex From Pyrococcus Woesei Length = 181 Back     alignment and structure
>pdb|1PCZ|A Chain A, Structure Of Tata-Binding Protein Length = 191 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
3eik_A218 Tata-box-binding protein; DNA-binding, initiation 2e-84
3eik_A218 Tata-box-binding protein; DNA-binding, initiation 3e-21
1rm1_A240 Tata-box binding protein; yeast TFIIA, TBP protein 7e-82
1rm1_A240 Tata-box binding protein; yeast TFIIA, TBP protein 6e-27
1ytb_A180 Protein (tata binding protein (TBP)); protein-DNA 9e-79
1ytb_A180 Protein (tata binding protein (TBP)); protein-DNA 1e-17
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 1e-77
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 9e-20
1ais_A182 TBP, protein (tata-binding protein); hyperthermoph 2e-77
1ais_A182 TBP, protein (tata-binding protein); hyperthermoph 6e-19
1mp9_A198 Tata-binding protein; transcription regulation, DN 2e-77
1mp9_A198 Tata-binding protein; transcription regulation, DN 2e-22
1mp9_A198 Tata-binding protein; transcription regulation, DN 2e-19
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Length = 218 Back     alignment and structure
 Score =  247 bits (632), Expect = 2e-84
 Identities = 136/173 (78%), Positives = 154/173 (89%)

Query: 16  VKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 75
           ++N+V+TVNL CKLDLK IAL+ARNAEYNPKRFAAVIMRIREPKTTALIFASGKMV TGA
Sbjct: 45  LQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 104

Query: 76  KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 135
           KSE+ S++AA++YA+II KLGF A F DFKIQNIV SCD+KF IRLEGLAY+H  + SYE
Sbjct: 105 KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 164

Query: 136 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 188
           PELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVRD+ Y AF NIYPVL + RK
Sbjct: 165 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 217
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Length = 218 Back     alignment and structure
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Length = 240 Back     alignment and structure
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Length = 240 Back     alignment and structure
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Length = 180 Back     alignment and structure
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Length = 180 Back     alignment and structure
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Length = 188 Back     alignment and structure
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Length = 188 Back     alignment and structure
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Length = 182 Back     alignment and structure
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Length = 182 Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Length = 198 Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Length = 198 Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Length = 198 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query191
1ytb_A180 Protein (tata binding protein (TBP)); protein-DNA 100.0
3eik_A218 Tata-box-binding protein; DNA-binding, initiation 100.0
1rm1_A240 Tata-box binding protein; yeast TFIIA, TBP protein 100.0
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 100.0
1ais_A182 TBP, protein (tata-binding protein); hyperthermoph 100.0
1mp9_A198 Tata-binding protein; transcription regulation, DN 100.0
1rm1_A240 Tata-box binding protein; yeast TFIIA, TBP protein 100.0
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 99.96
1mp9_A198 Tata-binding protein; transcription regulation, DN 99.95
1ais_A182 TBP, protein (tata-binding protein); hyperthermoph 99.95
1ytb_A180 Protein (tata binding protein (TBP)); protein-DNA 99.95
3eik_A218 Tata-box-binding protein; DNA-binding, initiation 99.93
2d0b_A 310 RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hyd 92.63
3vn5_A257 RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {A 92.3
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 90.48
3vn5_A 257 RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {A 89.83
2d0b_A 310 RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hyd 89.79
2av4_A160 Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI 81.39
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 80.85
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Back     alignment and structure
Probab=100.00  E-value=8.8e-70  Score=442.46  Aligned_cols=179  Identities=83%  Similarity=1.271  Sum_probs=175.9

Q ss_pred             cCCeeEEEEEEEEEEcCCccCHHHHHhhCCCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHH
Q 029591           10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYA   89 (191)
Q Consensus        10 ~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~   89 (191)
                      ++++|+|+|||||++++++|||++||..++|++||||+||||+||+++|+++++||+||||+||||+|+++++.|+++++
T Consensus         1 ~~~~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~   80 (180)
T 1ytb_A            1 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYA   80 (180)
T ss_dssp             CCCCCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcccceeEEeEEEEEEcCCccChhHHHHhcCCccccccCCCceeEEEecCCeEEEEEeecceEEEeccCCH
Q 029591           90 RIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR  169 (191)
Q Consensus        90 ~~l~~~g~~~~~~~~~i~Nivat~~l~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~~~~t~lIF~sGkivitGaks~  169 (191)
                      ++|+++|+++++.+|+|+|||||+|++|+|||+.||..|+++++||||+||||+||+.+|+++++||+||||+|||||++
T Consensus        81 ~~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkv~~lIF~SGkivitGak~~  160 (180)
T 1ytb_A           81 RIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQR  160 (180)
T ss_dssp             HHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEECCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSH
T ss_pred             HHHHHcCCCcccccceEEEEEEEEECCCccCHHHHHHhcccceEECCccCCcEEEEeCCCcEEEEEecCCeEEEEecCCH
Confidence            99999999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhc
Q 029591          170 DETYTAFENIYPVLTEFRK  188 (191)
Q Consensus       170 ~~~~~a~~~i~~~L~~~r~  188 (191)
                      +|+++|++.|+|+|.+||+
T Consensus       161 ~~~~~a~~~i~p~L~~~~~  179 (180)
T 1ytb_A          161 EEIYQAFEAIYPVLSEFRK  179 (180)
T ss_dssp             HHHHHHHHHHHHHHHHTBC
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999997
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Back     alignment and structure
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Back     alignment and structure
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Back     alignment and structure
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Back     alignment and structure
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Back     alignment and structure
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Back     alignment and structure
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Back     alignment and structure
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Back     alignment and structure
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Back     alignment and structure
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A Back     alignment and structure
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus} Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus} Back     alignment and structure
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A Back     alignment and structure
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 191
d1qnaa199 d.129.1.1 (A:17-115) TATA-box binding protein (TBP 6e-43
d1qnaa199 d.129.1.1 (A:17-115) TATA-box binding protein (TBP 8e-31
d1qnaa283 d.129.1.1 (A:116-198) TATA-box binding protein (TB 2e-38
d1qnaa283 d.129.1.1 (A:116-198) TATA-box binding protein (TB 3e-26
d1mp9a2101 d.129.1.1 (A:97-197) TATA-box binding protein (TBP 3e-36
d1mp9a2101 d.129.1.1 (A:97-197) TATA-box binding protein (TBP 9e-34
d1aisa192 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), 3e-35
d1aisa192 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), 5e-34
d1mp9a192 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), 5e-35
d1mp9a192 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), 1e-31
d1aisa289 d.129.1.1 (A:93-181) TATA-box binding protein (TBP 3e-34
d1aisa289 d.129.1.1 (A:93-181) TATA-box binding protein (TBP 1e-32
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: TATA-box binding protein (TBP), C-terminal domain
domain: TATA-box binding protein (TBP), C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  136 bits (345), Expect = 6e-43
 Identities = 86/96 (89%), Positives = 91/96 (94%)

Query: 11  GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 70
           G V +++NIVSTVNLDCKLDLK IALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM
Sbjct: 4   GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 63

Query: 71  VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKI 106
           VCTGAKSE  SK+AARKYARI+QKLGFPAKFKDFKI
Sbjct: 64  VCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKI 99
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99 Back     information, alignment and structure
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 83 Back     information, alignment and structure
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 83 Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 101 Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 101 Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 92 Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 92 Back     information, alignment and structure
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 92 Back     information, alignment and structure
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 92 Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 89 Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 89 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query191
d1qnaa199 TATA-box binding protein (TBP), C-terminal domain 100.0
d1qnaa283 TATA-box binding protein (TBP), C-terminal domain 100.0
d1mp9a192 TATA-box binding protein (TBP), C-terminal domain 99.98
d1aisa192 TATA-box binding protein (TBP), C-terminal domain 99.98
d1aisa289 TATA-box binding protein (TBP), C-terminal domain 99.97
d1aisa289 TATA-box binding protein (TBP), C-terminal domain 99.97
d1mp9a2101 TATA-box binding protein (TBP), C-terminal domain 99.97
d1aisa192 TATA-box binding protein (TBP), C-terminal domain 99.97
d1mp9a192 TATA-box binding protein (TBP), C-terminal domain 99.97
d1mp9a2101 TATA-box binding protein (TBP), C-terminal domain 99.97
d1qnaa199 TATA-box binding protein (TBP), C-terminal domain 99.97
d1qnaa283 TATA-box binding protein (TBP), C-terminal domain 99.96
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: TATA-box binding protein (TBP), C-terminal domain
domain: TATA-box binding protein (TBP), C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.2e-37  Score=225.22  Aligned_cols=97  Identities=89%  Similarity=1.257  Sum_probs=95.0

Q ss_pred             cCCeeEEEEEEEEEEcCCccCHHHHHhhCCCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHH
Q 029591           10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYA   89 (191)
Q Consensus        10 ~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~   89 (191)
                      ++++|+|+||||+++++++|||++||..++|++||||+||||++|+++|+++++||+||||+||||+|+++++.|+++++
T Consensus         3 ~~~~p~i~NiVas~~l~~~idL~~la~~~~n~eYePe~fpgli~R~~~P~~t~lIF~SGKivitGaks~~~~~~a~~~i~   82 (99)
T d1qnaa1           3 SGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYA   82 (99)
T ss_dssp             TSCCCEEEEEEEEEECCSCCCHHHHHHHCSSEEECTTTCSEEEEEETTTTEEEEEETTSEEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEEEEEcCCcccHHHHHhhCCCCEECcccCCEEEEEeCCCcEEEEEEcCCEEEEeccCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcccceeE
Q 029591           90 RIIQKLGFPAKFKDFKI  106 (191)
Q Consensus        90 ~~l~~~g~~~~~~~~~i  106 (191)
                      ++|+++|+++++.+|+|
T Consensus        83 ~~l~k~g~~v~~~~f~i   99 (99)
T d1qnaa1          83 RIVQKLGFPAKFKDFKI   99 (99)
T ss_dssp             HHHHHTTCCCCCEEEEE
T ss_pred             HHHHHcCCCCcccccCC
Confidence            99999999999999986
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure