Citrus Sinensis ID: 029614

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
MASIRSFGKWTVDHQICPQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPEGK
cccccccccccccccccccccccccccEEcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccEEcccccEEEEEEEccccccccccEEEEEEEEEEcccccEEccEEEccccccccccccccccccHHHHHcccccccEEEEEEccccccccccccccccccEEEEEEEEEEEcccccc
cccHHHHcccccccccccccccccccccEccccHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccHHcccccccccEEEEEEEccccccccccEEEEEEEEEEEcccccccccccccccccEEEccccccccccHccccccEcccEEEEEEcccHccccccccccccccEEEEEEEEEcccccccc
masirsfgkwtvdhqicpqhtTIQAKQAVVSIPISRRAAAILISslpfsvislpkcseARERRnkkaipledyhttsdglkyydivegkgpvaqkgstvqpyefkvggppgkerkrefvdnqnglfsaqaapkpppamysvtegmkvggkrtvivppeagydkkrmneippgatfELNIELlqvkppegk
masirsfgkwtvdhqiCPQHTTIQAKQAVVSIPISRRAAAILisslpfsvislpkcsearerrnkkaipledyhttsdgLKYYDIVEGKGPvaqkgstvqpyefkVGGPPGKERKREFVDNQNGLfsaqaapkpppAMYSVTegmkvggkrtvivppeagydkkrmneippgatfelniellqvkppegk
MASIRSFGKWTVDHQICPQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPEGK
*****SFGKWTVDHQICPQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKC***********IPLEDYHTTSDGLKYYDIVEGK***************************************************************VI********************FELNIEL*********
**********************************SRRAAAILISSLPFSV**************************SDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERK**********FSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELL*VKP****
MASIRSFGKWTVDHQICPQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPEGK
**************Q*CPQ*******QAVVSIPISRRAAAILISSLPFSVISLPK*************PLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVK*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASIRSFGKWTVDHQICPQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPEGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query190 2.2.26 [Sep-21-2011]
Q9LM71232 Peptidyl-prolyl cis-trans yes no 0.984 0.806 0.583 5e-55
Q9SR70230 Peptidyl-prolyl cis-trans no no 0.773 0.639 0.347 2e-15
Q8LB65234 Peptidyl-prolyl cis-trans no no 0.821 0.666 0.273 1e-05
Q9LYR5256 Peptidyl-prolyl cis-trans no no 0.526 0.390 0.311 4e-05
Q5R941211 Peptidyl-prolyl cis-trans yes no 0.221 0.199 0.476 0.0004
Q9NWM8211 Peptidyl-prolyl cis-trans yes no 0.221 0.199 0.476 0.0004
P28725124 FK506-binding protein OS= N/A no 0.542 0.830 0.324 0.0005
Q9FLB3143 Peptidyl-prolyl cis-trans no no 0.221 0.293 0.476 0.0005
>sp|Q9LM71|FKB18_ARATH Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic OS=Arabidopsis thaliana GN=FKBP18 PE=1 SV=2 Back     alignment and function desciption
 Score =  213 bits (543), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/228 (58%), Positives = 154/228 (67%), Gaps = 41/228 (17%)

Query: 1   MASIRSFGKWTVD-HQICPQHTTI-QAKQA-------VVSIPISRR-AAAILISSLPFS- 49
           MASI S  +W  + H   P+ T+I +A Q+         S+PISRR A+ IL+SS+P + 
Sbjct: 1   MASISSLHRWASNQHSRLPRITSISEADQSRPINQVVAFSVPISRRDASIILLSSIPLTS 60

Query: 50  -VISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQ-------- 100
             +  P  SEARERR++K IPLE+Y T  +GLK+YDI EGKGPVA +GST Q        
Sbjct: 61  FFVLTPSSSEARERRSRKVIPLEEYSTGPEGLKFYDIEEGKGPVATEGSTAQVHFDCRYR 120

Query: 101 ---------------------PYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMY 139
                                PYEFKVG  PGKERKREFVDN NGLFSAQAAPKPPPAMY
Sbjct: 121 SITAISTRESKLLAGNRSIAQPYEFKVGSTPGKERKREFVDNPNGLFSAQAAPKPPPAMY 180

Query: 140 SVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPP 187
            +TEGMKVGGKRTVIVPPEAGY +K MNEIPPGATFELNIELL+V PP
Sbjct: 181 FITEGMKVGGKRTVIVPPEAGYGQKGMNEIPPGATFELNIELLRVTPP 228
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|Q9SR70|FK164_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-4 PE=1 SV=1 Back     alignment and function description
>sp|Q8LB65|FK173_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-3, chloroplastic OS=Arabidopsis thaliana GN=FKBP17-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYR5|FKB19_ARATH Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic OS=Arabidopsis thaliana GN=FKBP19 PE=1 SV=1 Back     alignment and function description
>sp|Q5R941|FKB14_PONAB Peptidyl-prolyl cis-trans isomerase FKBP14 OS=Pongo abelii GN=FKBP14 PE=2 SV=1 Back     alignment and function description
>sp|Q9NWM8|FKB14_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP14 OS=Homo sapiens GN=FKBP14 PE=1 SV=1 Back     alignment and function description
>sp|P28725|FKBP_STRAQ FK506-binding protein OS=Streptomyces anulatus GN=fkbP PE=1 SV=1 Back     alignment and function description
>sp|Q9FLB3|FK153_ARATH Peptidyl-prolyl cis-trans isomerase FKBP15-3 OS=Arabidopsis thaliana GN=FKBP15-3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query190
297745584222 unnamed protein product [Vitis vinifera] 0.994 0.851 0.641 2e-62
357467145228 hypothetical protein MTR_3g115970 [Medic 0.821 0.684 0.647 2e-58
147815138 682 hypothetical protein VITISV_024651 [Viti 0.963 0.268 0.622 2e-58
359491859187 PREDICTED: probable FKBP-type peptidyl-p 0.831 0.844 0.691 2e-56
449455631227 PREDICTED: peptidyl-prolyl cis-trans iso 0.910 0.762 0.635 1e-55
388514903243 unknown [Lotus japonicus] 0.831 0.650 0.597 1e-54
15218039232 peptidylprolyl isomerase [Arabidopsis th 0.984 0.806 0.583 3e-53
8886936233 F2D10.32 [Arabidopsis thaliana] 0.984 0.802 0.580 3e-53
255539292219 FK506 binding protein, putative [Ricinus 0.994 0.863 0.6 3e-52
224083348209 predicted protein [Populus trichocarpa] 0.889 0.808 0.609 3e-52
>gi|297745584|emb|CBI40749.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/223 (64%), Positives = 161/223 (72%), Gaps = 34/223 (15%)

Query: 1   MASIRSFGKWTVDHQIC-PQHTTIQA---KQAVVSIPISRRAAAILISSLPFSVISLPKC 56
           MASIRS  +W VD+ +  P  + IQ    K  ++ +PISRR A ILIS LPFSVIS P  
Sbjct: 1   MASIRSIHRWDVDNLLLTPTSSAIQTQPPKHVILPMPISRRCA-ILISVLPFSVISQPHS 59

Query: 57  SEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQ---------------- 100
           S+ARERR KK IPLEDY T+ DGLKYYD+V+G GPVA+KGS+VQ                
Sbjct: 60  SDARERRTKKNIPLEDYLTSPDGLKYYDVVDGNGPVAEKGSSVQVHFDCIYRSITAVSSR 119

Query: 101 -------------PYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKV 147
                        PY FKVG PPGKERKREFVDN NGLFSAQAAPKPPPA+YS+TEGMKV
Sbjct: 120 ESKLLAGNRIIAQPYVFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPPALYSITEGMKV 179

Query: 148 GGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPEGK 190
           GGKRTVIVPPEAGY +K M+EIPPGATFELN+ELLQV PPEGK
Sbjct: 180 GGKRTVIVPPEAGYGQKGMSEIPPGATFELNVELLQVLPPEGK 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357467145|ref|XP_003603857.1| hypothetical protein MTR_3g115970 [Medicago truncatula] gi|355492905|gb|AES74108.1| hypothetical protein MTR_3g115970 [Medicago truncatula] Back     alignment and taxonomy information
>gi|147815138|emb|CAN59776.1| hypothetical protein VITISV_024651 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359491859|ref|XP_002273060.2| PREDICTED: probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455631|ref|XP_004145556.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic-like [Cucumis sativus] gi|449530267|ref|XP_004172117.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388514903|gb|AFK45513.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|15218039|ref|NP_173504.1| peptidylprolyl isomerase [Arabidopsis thaliana] gi|18203241|sp|Q9LM71.2|FKB18_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic; Short=PPIase FKBP18; AltName: Full=FK506-binding protein 18; Short=AtFKBP18; AltName: Full=Immunophilin FKBP18; AltName: Full=Rotamase; Flags: Precursor gi|26449905|dbj|BAC42074.1| unknown protein [Arabidopsis thaliana] gi|28827556|gb|AAO50622.1| putative FKBP-type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gi|332191905|gb|AEE30026.1| peptidylprolyl isomerase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8886936|gb|AAF80622.1|AC069251_15 F2D10.32 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255539292|ref|XP_002510711.1| FK506 binding protein, putative [Ricinus communis] gi|223551412|gb|EEF52898.1| FK506 binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224083348|ref|XP_002306991.1| predicted protein [Populus trichocarpa] gi|222856440|gb|EEE93987.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query190
TAIR|locus:2030502232 AT1G20810 "AT1G20810" [Arabido 0.505 0.413 0.833 4.8e-62
UNIPROTKB|Q0E4I6234 Os02g0117600 "Peptidyl-prolyl 0.521 0.423 0.727 1.1e-50
TAIR|locus:2100063230 AT3G10060 "AT3G10060" [Arabido 0.826 0.682 0.338 5.4e-15
UNIPROTKB|A8JC71228 FKB16-4 "Peptidyl-prolyl cis-t 0.826 0.688 0.329 1e-13
UNIPROTKB|Q74AS7156 GSU2274 "Peptidyl-prolyl cis-t 0.773 0.942 0.309 2.9e-09
TIGR_CMR|GSU_2274156 GSU_2274 "FKBP-type peptidyl-p 0.773 0.942 0.309 2.9e-09
UNIPROTKB|Q89SJ5154 fbp "Peptidyl-prolyl cis-trans 0.578 0.714 0.339 6.8e-08
UNIPROTKB|P73037201 ytfC "Peptidyl-prolyl cis-tran 0.573 0.542 0.321 2.6e-07
UNIPROTKB|A8IVN2252 FKB19 "Peptidyl-prolyl cis-tra 0.584 0.440 0.330 3.6e-07
UNIPROTKB|Q7NMC5161 glr0841 "Peptidyl-prolyl cis-t 0.215 0.254 0.476 5.4e-07
TAIR|locus:2030502 AT1G20810 "AT1G20810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 418 (152.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
 Identities = 80/96 (83%), Positives = 84/96 (87%)

Query:    92 VAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKR 151
             +A   S  QPYEFKVG  PGKERKREFVDN NGLFSAQAAPKPPPAMY +TEGMKVGGKR
Sbjct:   133 LAGNRSIAQPYEFKVGSTPGKERKREFVDNPNGLFSAQAAPKPPPAMYFITEGMKVGGKR 192

Query:   152 TVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPP 187
             TVIVPPEAGY +K MNEIPPGATFELNIELL+V PP
Sbjct:   193 TVIVPPEAGYGQKGMNEIPPGATFELNIELLRVTPP 228
GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA
GO:0005528 "FK506 binding" evidence=ISS;IBA
GO:0006457 "protein folding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IBA
GO:0018208 "peptidyl-proline modification" evidence=IBA
GO:0031977 "thylakoid lumen" evidence=IDA
UNIPROTKB|Q0E4I6 Os02g0117600 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2100063 AT3G10060 "AT3G10060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8JC71 FKB16-4 "Peptidyl-prolyl cis-trans isomerase" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|Q74AS7 GSU2274 "Peptidyl-prolyl cis-trans isomerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2274 GSU_2274 "FKBP-type peptidyl-prolyl cis-trans isomerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q89SJ5 fbp "Peptidyl-prolyl cis-trans isomerase" [Bradyrhizobium japonicum USDA 110 (taxid:224911)] Back     alignment and assigned GO terms
UNIPROTKB|P73037 ytfC "Peptidyl-prolyl cis-trans isomerase" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
UNIPROTKB|A8IVN2 FKB19 "Peptidyl-prolyl cis-trans isomerase" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|Q7NMC5 glr0841 "Peptidyl-prolyl cis-trans isomerase" [Gloeobacter violaceus PCC 7421 (taxid:251221)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LM71FKB18_ARATH5, ., 2, ., 1, ., 80.58330.98420.8060yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
COG0545205 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans 2e-10
pfam0025494 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t 6e-09
PRK10902269 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis- 1e-05
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 40/137 (29%), Positives = 51/137 (37%), Gaps = 55/137 (40%)

Query: 75  TTSDGLKYYDIVEGKGPVAQKGSTV---------------------QPYEFKVGGP-PGK 112
           T   GL+Y  +  G G   +KG TV                     QP EF +GG  PG 
Sbjct: 98  TLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLGGVIPG- 156

Query: 113 ERKREFVDNQNGLFSAQAAPKPPPAMYSVTEG---MKVGGKRTVIVPPEAGYDKKRMN-E 168
                                         EG   MKVGGKR + +PPE  Y ++ +   
Sbjct: 157 ----------------------------WDEGLQGMKVGGKRKLTIPPELAYGERGVPGV 188

Query: 169 IPPGATFELNIELLQVK 185
           IPP +T    +ELL VK
Sbjct: 189 IPPNSTLVFEVELLDVK 205

Length = 205
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase Back     alignment and domain information
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 190
COG0545205 FkpA FKBP-type peptidyl-prolyl cis-trans isomerase 99.97
KOG0552226 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.95
PRK11570206 peptidyl-prolyl cis-trans isomerase; Provisional 99.93
TIGR03516177 ppisom_GldI peptidyl-prolyl isomerase, gliding mot 99.93
KOG0544108 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.92
PRK10902269 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.92
KOG0549188 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.91
PF0025494 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer 99.78
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.56
PRK15095156 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.54
PRK10737196 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.4
COG1047174 SlpA FKBP-type peptidyl-prolyl cis-trans isomerase 99.36
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.63
TIGR00115 408 tig trigger factor. Trigger factor is a ribosome-a 98.24
PRK01490 435 tig trigger factor; Provisional 97.98
KOG0549 188 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.51
COG0544 441 Tig FKBP-type peptidyl-prolyl cis-trans isomerase 97.16
KOG0545 329 consensus Aryl-hydrocarbon receptor-interacting pr 90.0
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.97  E-value=2.5e-30  Score=208.22  Aligned_cols=115  Identities=30%  Similarity=0.446  Sum_probs=104.0

Q ss_pred             CCCCCCceeCCCCeEEEEEecCCCcccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecCCCCCccHHHHhccCc
Q 029614           67 AIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMK  146 (190)
Q Consensus        67 ~~~~~~~~~~~sGl~y~~l~~G~G~~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~~~~i~Gl~eal~gMk  146 (190)
                      +.+.....++++||+|++++.|+|+.|+.+|+|+ +||+..+.||++||+||.+..  ++.|..+ ++|+||++||++|+
T Consensus        90 ~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~-vhY~G~l~~G~vFDsS~~rg~--p~~f~l~-~vI~Gw~egl~~M~  165 (205)
T COG0545          90 NAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVT-VHYTGTLIDGTVFDSSYDRGQ--PAEFPLG-GVIPGWDEGLQGMK  165 (205)
T ss_pred             hcccCCceECCCCcEEEEEeccCCCCCCCCCEEE-EEEEEecCCCCccccccccCC--CceeecC-CeeehHHHHHhhCC
Confidence            3455678899999999999999999999999999 999999999999999997754  4555555 78999999999999


Q ss_pred             cccEEEEEecCCCCCCCCCCC-CCCCCCeEEEEEEEEeec
Q 029614          147 VGGKRTVIVPPEAGYDKKRMN-EIPPGATFELNIELLQVK  185 (190)
Q Consensus       147 ~G~k~~v~IPp~layG~~g~~-~IPp~atLvf~VeLl~v~  185 (190)
                      +|++|+++|||++|||.+|.+ .||||++|+|||||++|.
T Consensus       166 vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~  205 (205)
T COG0545         166 VGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK  205 (205)
T ss_pred             CCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence            999999999999999999965 599999999999999974

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated Back     alignment and domain information
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5 Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00115 tig trigger factor Back     alignment and domain information
>PRK01490 tig trigger factor; Provisional Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
4dz3_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 4e-07
3uf8_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 5e-07
3vaw_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 6e-07
4ggq_C209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 6e-07
2y78_A133 Crystal Structure Of Bpss1823, A Mip-Like Chaperone 7e-07
2ke0_A117 Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso 9e-07
3uqa_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 9e-07
3uqb_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 9e-07
4dip_A125 Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran 4e-05
4dz2_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 7e-05
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure 
Iteration: 1

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 75  TTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFS-AQAAPK 133
           TT  GLKY D+ EG G  A+ G TV  +     G     +K +   ++N  F+       
Sbjct: 5   TTESGLKYEDLTEGSGAEARAGQTVSVHYT---GWLTDGQKFDSSKDRNDPFAFVLGGGH 61
Query: 134 PPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNE-IPPGATFELNIELLQV 184
                    +GMKVGG R + +PP+ GY  +     IPP AT    +ELL V
Sbjct: 62  VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 113
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209 Back     alignment and structure
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133 Back     alignment and structure
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117 Back     alignment and structure
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125 Back     alignment and structure
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 1e-12
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 5e-12
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 1e-11
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 1e-11
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 5e-11
1fd9_A213 Protein (macrophage infectivity potentiator prote; 7e-11
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 9e-11
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 2e-10
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 2e-10
1jvw_A167 Macrophage infectivity potentiator; chagas disease 2e-09
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 2e-09
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 7e-09
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 8e-09
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 9e-09
2ppn_A107 FK506-binding protein 1A; high resolution protein 1e-08
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 2e-08
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 2e-08
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 2e-08
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 3e-08
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 3e-08
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 6e-08
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 6e-06
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 1e-05
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 2e-06
1q1c_A 280 FK506-binding protein 4; rotamase, TPR repeat, nuc 5e-06
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 2e-06
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 8e-06
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 6e-05
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 9e-05
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 1e-04
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129 Back     alignment and structure
 Score = 60.8 bits (148), Expect = 1e-12
 Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 50/144 (34%)

Query: 71  EDYHTTSDGLKYYDIVEGKGPVAQKGSTV---------------------QPYEFKVGGP 109
            ++  +  GL + D V G GP A KG  +                     +P  F++G  
Sbjct: 5   CEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVG 64

Query: 110 ---PGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGY----- 161
               G ++         G+  +   P            M  GGKRT+ +PPE  Y     
Sbjct: 65  EVIKGWDQ---------GILGSDGIPP-----------MLTGGKRTLRIPPELAYGDRGA 104

Query: 162 -DKKRMNEIPPGATFELNIELLQV 184
             K     IPP +    +IE +  
Sbjct: 105 GCKGGSCLIPPASVLLFDIEYIGK 128
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224 Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133 Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209 Back     alignment and structure
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125 Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213 Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219 Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180 Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134 Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167 Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113 Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130 Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102 Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128 Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107 Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129 Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135 Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135 Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144 Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157 Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query190
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 99.94
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 99.93
1jvw_A167 Macrophage infectivity potentiator; chagas disease 99.93
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 99.93
1fd9_A213 Protein (macrophage infectivity potentiator prote; 99.92
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 99.92
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 99.92
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 99.92
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 99.92
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 99.91
2ppn_A107 FK506-binding protein 1A; high resolution protein 99.91
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.91
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 99.91
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.91
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 99.91
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 99.91
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 99.91
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 99.9
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 99.9
2lkn_A165 AH receptor-interacting protein; FKBP-type domain, 99.89
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 99.89
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 99.89
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 99.85
1q1c_A 280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.84
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.82
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.81
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.81
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.79
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.77
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 99.62
1hxv_A113 Trigger factor; FKBP fold, ppiase, chaperone; NMR 99.61
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 99.58
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 99.58
1p5q_A 336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.56
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 99.55
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 99.55
3prb_A231 FKBP-type peptidyl-prolyl CIS-trans isomerase; cha 99.54
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 99.53
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 99.49
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.15
1w26_A 432 Trigger factor, TF; chaperone, protein folding, ri 99.14
1t11_A 392 Trigger factor, TF; helix-turn-helix, four-helix-b 98.8
3gty_X 433 Trigger factor, TF; chaperone-client complex, cell 96.93
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Back     alignment and structure
Probab=99.94  E-value=2.2e-26  Score=172.64  Aligned_cols=116  Identities=21%  Similarity=0.244  Sum_probs=103.9

Q ss_pred             CceeCCCCeEEEEEecCC--CcccCCCCceEEEEEEEECC-CCCEeeceeecCCCCceeeecC-CCCCccHHHHhccCcc
Q 029614           72 DYHTTSDGLKYYDIVEGK--GPVAQKGSTVQPYEFKVGGP-PGKERKREFVDNQNGLFSAQAA-PKPPPAMYSVTEGMKV  147 (190)
Q Consensus        72 ~~~~~~sGl~y~~l~~G~--G~~~~~Gd~V~~~~y~~~~~-dG~~~~ss~~~~~~~~~~~~~~-~~~i~Gl~eal~gMk~  147 (190)
                      +...+++|++|+++++|+  |..++.||.|. +||+++.. ||++|++++.+....++.|..+ ...++||+++|.+|++
T Consensus         6 ~~~~~~~gl~~~~l~~g~~~g~~~~~gd~V~-v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~   84 (125)
T 4dip_A            6 GALIPEPEVKIEVLQKPFICHRKTKGGDLML-VHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCV   84 (125)
T ss_dssp             GGGCCCCCCEEEEEECCSCCSCCCCTTCEEE-EEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCT
T ss_pred             ceEECCCCeEEEEEEcCCCCCCcCCCCCEEE-EEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCC
Confidence            456678999999999998  88899999999 99999987 9999999986444456777765 4679999999999999


Q ss_pred             ccEEEEEecCCCCCCCCCCCCCCCCCeEEEEEEEEeecCCC
Q 029614          148 GGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPE  188 (190)
Q Consensus       148 G~k~~v~IPp~layG~~g~~~IPp~atLvf~VeLl~v~~~~  188 (190)
                      |++++++|||++|||+++.+.||||++|+|+|||++|++.|
T Consensus        85 Ge~~~~~ip~~~aYG~~g~~~Ip~~~~l~f~vel~~i~~~P  125 (125)
T 4dip_A           85 GEKRKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIRNGP  125 (125)
T ss_dssp             TCEEEEEECGGGTTTTTCBTTBCTTCCEEEEEEEEEEECCC
T ss_pred             CCEEEEEEChHHhcCCCCCCCCCCCCeEEEEEEEEEEEcCC
Confidence            99999999999999999988999999999999999998765
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0 Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A* Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Back     alignment and structure
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Back     alignment and structure
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A Back     alignment and structure
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Back     alignment and structure
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Back     alignment and structure
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 190
d1u79a_125 d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha 2e-14
d2ppna1107 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12) 8e-11
d1q6ha_210 d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 1e-10
d1yata_113 d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas 9e-10
d1fd9a_204 d.26.1.1 (A:) Macrophage infectivity potentiator p 1e-09
d1r9ha_118 d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd 2e-09
d1q1ca1120 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu 3e-09
d1kt1a2111 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo 3e-09
d1kt1a3115 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M 2e-08
d1q1ca2117 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H 1e-07
d1jvwa_160 d.26.1.1 (A:) Macrophage infectivity potentiator p 1e-06
d1pbka_116 d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 3e-06
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 64.9 bits (157), Expect = 2e-14
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 72  DYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAA 131
           ++  +  GL + D V G GP A KG  ++   +      GK     +   +   F     
Sbjct: 2   EFSVSPSGLAFCDKVVGYGPEAVKGQLIK-AHYVGKLENGKVFDSSYNRGKPLTFRIGVG 60

Query: 132 PKPPPAMYSV-----TEGMKVGGKRTVIVPPEAGYDKKRM------NEIPPGATFELNIE 180
                    +        M  GGKRT+ +PPE  Y  +          IPP +    +IE
Sbjct: 61  EVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIE 120

Query: 181 LLQV 184
            +  
Sbjct: 121 YIGK 124
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210 Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113 Back     information, alignment and structure
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204 Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118 Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111 Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115 Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160 Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query190
d1q6ha_210 Peptidyl-prolyl cis-trans isomerase FkpA {Escheric 99.95
d1fd9a_204 Macrophage infectivity potentiator protein (MIP) { 99.95
d1u79a_125 FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 99.94
d1yata_113 Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc 99.94
d2ppna1107 FK-506 binding protein (FKBP12), an immunophilin { 99.94
d1jvwa_160 Macrophage infectivity potentiator protein (MIP) { 99.94
d1q1ca1120 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.93
d1r9ha_118 FKB-6, N-terminal domain {Caenorhabditis elegans [ 99.93
d1kt1a2111 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.93
d1pbka_116 FKBP25 {Human (Homo sapiens) [TaxId: 9606]} 99.92
d1kt1a3115 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.91
d1q1ca2117 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.89
d1ix5a_151 Archaeal FKBP {Archaeon Methanococcus thermolithot 99.54
d1hxva_85 Trigger factor PPIase domain {Mycoplasma genitaliu 99.28
d1l1pa_106 Trigger factor PPIase domain {Escherichia coli [Ta 98.3
d1t11a3113 Trigger factor PPIase domain {Vibrio cholerae [Tax 98.07
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.8e-28  Score=197.80  Aligned_cols=113  Identities=30%  Similarity=0.450  Sum_probs=102.8

Q ss_pred             CCCCceeCCCCeEEEEEecCCCcccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecCCCCCccHHHHhccCccc
Q 029614           69 PLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVG  148 (190)
Q Consensus        69 ~~~~~~~~~sGl~y~~l~~G~G~~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~~~~i~Gl~eal~gMk~G  148 (190)
                      +.+++.++++||+|+++++|+|+.|..||.|. +||+.+..||++|++++.+.  .++.+..+ .+|+||+++|.+|++|
T Consensus        98 ~~~~v~~~~sGl~y~v~~~G~G~~p~~gd~v~-v~y~g~l~dG~~fd~s~~~~--~p~~~~~~-~vi~g~~e~l~~m~~G  173 (210)
T d1q6ha_          98 KEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVV-VNYKGTLIDGKEFDNSYTRG--EPLSFRLD-GVIPGWTEGLKNIKKG  173 (210)
T ss_dssp             HSTTEEECTTSCEEEEEECCSSCCCCTTCEEE-EEEEEEETTSCEEEEGGGGT--SCEEEEGG-GSCHHHHHHGGGSCTT
T ss_pred             ccCceEEccCceEEEEeeCCCCCCCCCCceEE-EEEEEEEcCCCEEeecccCC--CcceeccC-ccchhHHHHHhhccCC
Confidence            34678899999999999999999999999999 99999999999999998654  34555554 5799999999999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCCCCCeEEEEEEEEeec
Q 029614          149 GKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVK  185 (190)
Q Consensus       149 ~k~~v~IPp~layG~~g~~~IPp~atLvf~VeLl~v~  185 (190)
                      ++++++|||++|||++|.+.||||++|+|+|||++|+
T Consensus       174 ~k~~~~iP~~laYG~~g~~~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         174 GKIKLVIPPELAYGKAGVPGIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             CEEEEEECGGGTTTTTCBTTBCTTCCEEEEEEEEEEC
T ss_pred             CEEEEEECHHHCcCCCCCCCCCcCCcEEEEEEEEEEC
Confidence            9999999999999999999999999999999999985
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Back     information, alignment and structure
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure