Citrus Sinensis ID: 029627

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MEQQPYTYTEHELTDSATATATAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVSESDGDDFWGEIELPELMNGGWYSNSCGWTFSCDTTSTWIDEDAQPQEQQPPSMACL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccHHccccccccccHHHHHHHHHHHHHHcccccccccccccccccHccHcccccHcccccccccccccccccccccccccHHHcccccccccccc
Coil and Loop (DISEMBL)
meqqpytyteheltdsaTATATAihrksssqtggtrhpvyrgvrkrrwgkwvsEIREPRKKtriwlgsfpvpemaARAYDVAAYCLKGRkaqlnfpdkvealprpstRAARDIQEAAAKAAHAGLisseksdvsesdgddfwgeielpelmnggwysnscgwtfscdttstwidedaqpqeqqppsmacl
Flexible Loop (DISEMBL)
meqqpytyteheltdsaTATATAihrksssqtggtrhpvyrgvrkrrwgkwvseireprkktriwlgsfpvpEMAARAYDVAAYCLKGRKAQlnfpdkvealprPSTRAARDIQEAAAKAAHaglisseksdvsesdGDDFWGEIELPELMNGGWYSNSCGWTFSCDTTSTWIDedaqpqeqqppsmacl
Low Complexity Region (SEG)
MEQQPYTYTEHELTDSATATATAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVSESDGDDFWGEIELPELMNGGWYSNSCGWTFSCDTTSTWIDEDAqpqeqqppSMACL
Disordered region (IsUnstruct)
**************************************VYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNF********************************************DFWGEIELPELMNGGWYSNSCGWTFSCDTTSTWI*****************
Disordered Region (DISOPRED)
*****************************************GVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVE******************************************************************DTT*TWIDEDAQPQEQQPPSMACL
Disordered Region (DISEMBL)
**********HELTDSATATA***************HPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVEALP***********************************DDFWGEIELPELMNGGWYSNSCGWTFSCDTTSTWIDED**************
Disordered Region (DISPRO)
***********************************RHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVEALPRP**R**RDIQEAAAKAAH*********************************************TTSTWIDEDAQPQEQQPPSMACL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQQPYTYTEHELTDSATATATAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVSESDGDDFWGEIELPELMNGGWYSNSCGWTFSCDTTSTWIDEDAQPQEQQPPSMACL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q1ECI2	192	Ethylene-responsive trans	yes	no	0.952	0.942	0.561	2e-46
Q39127	218	Ethylene-responsive trans	no	no	0.457	0.399	0.735	2e-32
Q9LYD3	236	Dehydration-responsive el	no	no	0.573	0.461	0.585	2e-31
Q8LBQ7	295	Ethylene-responsive trans	no	no	0.5	0.322	0.631	3e-29
Q9M080	221	Ethylene-responsive trans	no	no	0.463	0.398	0.636	2e-28
Q9SUK8	179	Ethylene-responsive trans	no	no	0.473	0.502	0.6	1e-26
Q9LU18	236	Ethylene-responsive trans	no	no	0.415	0.334	0.645	1e-25
Q9SYS6	216	Dehydration-responsive el	no	no	0.457	0.402	0.632	4e-25
Q9FJ93	224	Dehydration-responsive el	no	no	0.468	0.397	0.617	7e-25
Q9C9I2	183	Ethylene-responsive trans	no	no	0.426	0.442	0.629	1e-24

>sp|Q1ECI2|ERF23_ARATH Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1

 Score =  184 bits (468), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 125/194 (64%), Gaps = 13/194 (6%)

Query: 1   MEQQPYTYTEHELTDSATATATAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRK 60
           +   P T  E   T SA  +     +++SS T  TRHPVY GVRKRRWGKWVSEIREPRK
Sbjct: 8   LSSPPVTNNEPTATASAVKSCGGGGKETSSST--TRHPVYHGVRKRRWGKWVSEIREPRK 65

Query: 61  KTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQ-EAAAK 119
           K+RIWLGSFPVPEMAA+AYDVAA+CLKGRKAQLNFP+++E LPRPST   RDIQ  AA  
Sbjct: 66  KSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAAAKA 125

Query: 120 AAHAGLISSEKSDVSE-SDGDDFWGEIELPELM--NGGWYSNSCGWTFSCDTTSTWIDED 176
           A    +I     DV+   DGDDFW  IELPELM   GGW        F     +TW+ + 
Sbjct: 126 ANAVKIIKMGDDDVAGIDDGDDFWEGIELPELMMSGGGWSPEP----FVAGDDATWLVDG 181

Query: 177 AQPQEQQPPSMACL 190
              Q Q    MACL
Sbjct: 182 DLYQYQ---FMACL 192

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 72/87 (82%)

Query: 36  RHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNF 95
           +HPVYRGVRKR WGKWVSEIREPRKK+RIWLG+FP PEMAARA+DVAA  +KG  A LNF
Sbjct: 32  KHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNF 91

Query: 96  PDKVEALPRPSTRAARDIQEAAAKAAH 122
           PD   + PRPS+ + RDIQ AA KAAH
Sbjct: 92  PDLAGSFPRPSSLSPRDIQVAALKAAH 118

Putative transcriptional activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 81/111 (72%), Gaps = 2/111 (1%)

Query: 14  TDSATATATAIHRKSSSQTG--GTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPV 71
           +DS +  + A   +  ++ G    +HPVYRGVR R WGKWVSEIREPRKK+RIWLG+FP 
Sbjct: 23  SDSVSDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPT 82

Query: 72  PEMAARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAH 122
           PEMAARA+DVAA  +KG  A LNFP+  ++ PRP + + RDIQ AA KAAH
Sbjct: 83  PEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAH 133

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 69/95 (72%)

Query: 27  KSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCL 86
           K     GG +HP YRGVR R WGKWVSEIREPRKK+RIWLG++P  EMAARA+DVAA  +
Sbjct: 87  KRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAI 146

Query: 87  KGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAA 121
           KG  A LNFP     LPRP T + +DIQ AA+ AA
Sbjct: 147 KGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAA 181

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M080|ERF43_ARATH Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 67/88 (76%)

Query: 34  GTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQL 93
             + PVYRGVR R WGKWVSEIREPRKK+RIWLG+FP  EMA RA+DVAA  +KG  A L
Sbjct: 13  NNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAIL 72

Query: 94  NFPDKVEALPRPSTRAARDIQEAAAKAA 121
           NFP+  + LPRP + + RD++ AA KAA
Sbjct: 73  NFPELSKLLPRPVSLSPRDVRAAATKAA 100

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUK8|ERF39_ARATH Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 68/90 (75%)

Query: 26  RKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYC 85
           +  + Q G ++ P +RGVR R+WGKWVSEIREPRKK+RIWLG+F  PEMAARA+DVAA  
Sbjct: 26  KTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALA 85

Query: 86  LKGRKAQLNFPDKVEALPRPSTRAARDIQE 115
           +KG  A LNFP+    LPRP++   +DIQE
Sbjct: 86  IKGGSAHLNFPELAYHLPRPASADPKDIQE 115

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU18|ERF36_ARATH Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=2

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 61/79 (77%)

Query: 36  RHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNF 95
           +HPVYRGVR R WGKWVSEIR+PRKKTRIWLG+F   +MAARA+DVAA  +KG  A LNF
Sbjct: 57  QHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNF 116

Query: 96  PDKVEALPRPSTRAARDIQ 114
           P+     PRP++ +  DIQ
Sbjct: 117 PELASLFPRPASSSPHDIQ 135

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYS6|DRE1C_ARATH Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2

 Score =  114 bits (285), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 66/87 (75%)

Query: 35  TRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLN 94
           TRHP+YRGVR+R  GKWV E+REP KKTRIWLG+F   EMAARA+DVAA  L+GR A LN
Sbjct: 46  TRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSACLN 105

Query: 95  FPDKVEALPRPSTRAARDIQEAAAKAA 121
           F D    L  P +  A++IQ+AAA+AA
Sbjct: 106 FADSAWRLRIPESTCAKEIQKAAAEAA 132

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ93|DRE1D_ARATH Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1

 Score =  113 bits (283), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 67/89 (75%)

Query: 35  TRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLN 94
           TRHP+YRGVR+R  GKWV E+REP KK+RIWLG+FP  EMAARA+DVAA  L+GR A LN
Sbjct: 49  TRHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLN 108

Query: 95  FPDKVEALPRPSTRAARDIQEAAAKAAHA 123
           F D    L  P T   ++IQ+AA++AA A
Sbjct: 109 FADSAWRLRIPETTCPKEIQKAASEAAMA 137

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9I2|ERF21_ARATH Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 63/81 (77%)

Query: 40  YRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKV 99
           YRGVRKR+WGKWVSEIREP  K RIWLGSF  PEMAA AYDVAA+  +GR+A+LNFP+  
Sbjct: 24  YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELA 83

Query: 100 EALPRPSTRAARDIQEAAAKA 120
            +LPRP+  ++  I+ A  +A
Sbjct: 84  SSLPRPADSSSDSIRMAVHEA 104

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
255564667	198	Transcriptional factor TINY, putative [R	0.968	0.929	0.627	1e-55
224127951	198	AP2/ERF domain-containing transcription	0.968	0.929	0.630	1e-53
225470924	207	PREDICTED: ethylene-responsive transcrip	0.8	0.734	0.678	2e-51
292668943	188	AP2 domain class transcription factor [M	0.836	0.845	0.661	2e-51
224064271	177	AP2/ERF domain-containing transcription	0.857	0.920	0.637	1e-49
356504179	184	PREDICTED: ethylene-responsive transcrip	0.815	0.842	0.672	3e-49
356520276	191	PREDICTED: ethylene-responsive transcrip	0.878	0.874	0.569	5e-47
224064277	177	AP2/ERF domain-containing transcription	0.857	0.920	0.642	8e-46
356571250	185	PREDICTED: ethylene-responsive transcrip	0.815	0.837	0.678	2e-45
297842988	186	hypothetical protein ARALYDRAFT_470149 [	0.926	0.946	0.573	4e-45

>gi|255564667|ref|XP_002523328.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223537416|gb|EEF39044.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/204 (62%), Positives = 148/204 (72%), Gaps = 20/204 (9%)

Query: 1   MEQQPYTYTEHELTDS----ATATATAIHRKSS-SQTGGTRHPVYRGVRKRRWGKWVSEI 55
           MEQQPYT  +   T S     T T   IH+ S  ++ GGTRHPVYRGVRKRRWGKWVSEI
Sbjct: 1   MEQQPYTEDDMTTTTSPLENTTTTTAGIHQNSDVTRGGGTRHPVYRGVRKRRWGKWVSEI 60

Query: 56  REPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQE 115
           REPRKK+RIWLGSFPVPEMAA+AYDVAAYCLKG KAQLNFPD+VE LPRPST  ARDIQ 
Sbjct: 61  REPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGCKAQLNFPDEVEDLPRPSTCTARDIQA 120

Query: 116 AAAKAAHAGLISSEKSDVSES---------DGDDFWGEIELPELMNGGWYSNSCGWTFSC 166
           AAA+AAH+ +I+ + S+++ S         D DDFWGEIELPELMN G+  +SC WT++ 
Sbjct: 121 AAAQAAHS-MIAVKSSNITNSDEGDGDGEGDPDDFWGEIELPELMNSGFNCSSCVWTYAT 179

Query: 167 DTTSTWIDEDAQPQEQQPPSMACL 190
              STW D +A  Q      MACL
Sbjct: 180 SGESTWQDGEATLQ-----FMACL 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127951|ref|XP_002320204.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372091|gb|ABQ62977.1| TINY-like protein [Populus trichocarpa] gi|222860977|gb|EEE98519.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/203 (63%), Positives = 145/203 (71%), Gaps = 19/203 (9%)

Query: 1   MEQQPYTYTEHELTDSATATATAIHRKSSSQTG-GTRHPVYRGVRKRRWGKWVSEIREPR 59
           MEQ PYT  +   T+S  A     H+ S +  G GTR+PVYRGVRKRRWGKWVSEIREPR
Sbjct: 1   MEQPPYT-EDDPTTNSPEAATAKTHQNSETPRGSGTRNPVYRGVRKRRWGKWVSEIREPR 59

Query: 60  KKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAK 119
           KK+RIWLGSFPVPEMAA+AYDVAAYCLKG KAQLNFPD+V+ LPRPST  ARDIQ AAAK
Sbjct: 60  KKSRIWLGSFPVPEMAAKAYDVAAYCLKGCKAQLNFPDEVDDLPRPSTCTARDIQAAAAK 119

Query: 120 AAHAGLISSEKSDVSESDG--------DDFWGEIELPELM--NGGWYSNSCGW--TFSCD 167
           AAH+ L+ ++KS  + SD         DDFWGEIELPEL+  N G   NSCGW  TF+ D
Sbjct: 120 AAHSVLLPTKKSIETNSDNSVDGEVADDDFWGEIELPELLTSNSGCCWNSCGWSTTFASD 179

Query: 168 TTSTWIDEDAQPQEQQPPSMACL 190
            +STW     Q  E  P  MACL
Sbjct: 180 -SSTW----QQDGEGLPQFMACL 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470924|ref|XP_002263994.1| PREDICTED: ethylene-responsive transcription factor ERF023 [Vitis vinifera]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/174 (67%), Positives = 131/174 (75%), Gaps = 22/174 (12%)

Query: 26  RKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYC 85
           R   ++ GGTRHPVYRGVRKRRWGKWVSEIREPRKK+RIWLGSFPVPEMAARAYDVAAY 
Sbjct: 32  RNPDAERGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAARAYDVAAYH 91

Query: 86  LKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVSESD----GDDF 141
           LKGRKAQLNFPD+VE LPRPS+  ARDIQ AAA+AA+A +IS++KS    SD    GDDF
Sbjct: 92  LKGRKAQLNFPDEVELLPRPSSCTARDIQAAAAEAANA-VISTKKSGTDGSDGDCNGDDF 150

Query: 142 WGEIELPELMNGG---W------------YSNSCGWTFSCDTTSTWIDEDAQPQ 180
           WGEIELPELM+GG   W            YSN C W FS D  +TW D D+  Q
Sbjct: 151 WGEIELPELMDGGKELWTDTVTEFSPESCYSNDCAWEFSGD--ATWTDGDSHQQ 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668943|gb|ADE41126.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/183 (66%), Positives = 132/183 (72%), Gaps = 24/183 (13%)

Query: 1   MEQQPYTYTEHELTDSATATATAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRK 60
           MEQ PYT       D  + T T    K+ SQ GGTRHPVYRGVRKRRWGKWVSEIREPRK
Sbjct: 1   MEQPPYT------EDDPSTTTTLP--KADSQGGGTRHPVYRGVRKRRWGKWVSEIREPRK 52

Query: 61  KTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKA 120
           K+RIWLGSFPVPEMAA+AYDVAAYCLKGRKAQLNFP++V+ LPRPST  ARDIQ AAA+A
Sbjct: 53  KSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFPEEVDHLPRPSTSTARDIQAAAAQA 112

Query: 121 AHAGLISSEKSDVSE------------SDGDDFWGEIELPELM-NGGWYSNSCGW---TF 164
           AH  + SS  +  S+              GDDFWGEIELPELM N G Y NSCGW   TF
Sbjct: 113 AHTIMKSSRITRKSDDDDDDHHHHSGTDGGDDFWGEIELPELMDNSGCYWNSCGWNMTTF 172

Query: 165 SCD 167
           S D
Sbjct: 173 SGD 175

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064271|ref|XP_002301413.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|118489406|gb|ABK96506.1| unknown [Populus trichocarpa x Populus deltoides] gi|148372089|gb|ABQ62976.1| TINY-like protein [Populus trichocarpa] gi|222843139|gb|EEE80686.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/182 (63%), Positives = 133/182 (73%), Gaps = 19/182 (10%)

Query: 22  TAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDV 81
           T +    +++  GTRHP YRGVRKRRWGKWVSEIREPRKK+RIWLGSFPVPEMAA+AYDV
Sbjct: 2   TRLQIPDTTRGSGTRHPAYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDV 61

Query: 82  AAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVSESD---- 137
           AAYCLKGRKAQLNFP++ + LP PST  ARDIQ AAAKAAH+ LI  +KS  + +D    
Sbjct: 62  AAYCLKGRKAQLNFPEEADDLPIPSTCTARDIQAAAAKAAHSVLIPMKKSSETNNDGGGD 121

Query: 138 ----GDDFWGEIELPELM--NGGWYSNSCGW--TFSCDTTSTWIDEDAQPQ-EQQPPSMA 188
               GDDFWGEIELPEL+  N G+  +SCGW  T + D  STW     QP  E   PSMA
Sbjct: 122 GEVAGDDFWGEIELPELLLSNSGYSWDSCGWNTTLASD-NSTW-----QPDGEGLQPSMA 175

Query: 189 CL 190
           CL
Sbjct: 176 CL 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504179|ref|XP_003520876.1| PREDICTED: ethylene-responsive transcription factor ERF023-like [Glycine max]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/168 (67%), Positives = 127/168 (75%), Gaps = 13/168 (7%)

Query: 33  GGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQ 92
           GGTRHP+YRGVRKRRWGKWVSEIREPRKK RIWLGSFPVPEMAARAYDVAAYCLKGRKAQ
Sbjct: 20  GGTRHPMYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPVPEMAARAYDVAAYCLKGRKAQ 79

Query: 93  LNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISS--EKSDVS----ESDGDDFWGEIE 146
           LNFPD V++LP PS+R ARDIQ AAA+AA     S   EKS ++    +S  DDFWGEIE
Sbjct: 80  LNFPDDVDSLPLPSSRTARDIQTAAAQAARMMKASGNDEKSGIASDDGDSGCDDFWGEIE 139

Query: 147 LPELMNG----GWYSNSCGWTFSCDTTSTWIDEDAQPQEQQPPSMACL 190
           LPELM+G    G  + +  WT S D  + W +E+  P  QQP  MACL
Sbjct: 140 LPELMDGECCWGCPAGASSWTSSGD-LAEWPEEELSP--QQPSFMACL 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520276|ref|XP_003528789.1| PREDICTED: ethylene-responsive transcription factor ERF023-like [Glycine max]

 Score =  192 bits (488), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 107/188 (56%), Positives = 130/188 (69%), Gaps = 21/188 (11%)

Query: 15  DSATATATAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEM 74
           D+  AT +++ + ++   GGTRHP++RGVRKRRWGKWVSEIREPRKK+RIWLGSFP PEM
Sbjct: 13  DATAATTSSVDKPATPHAGGTRHPLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEM 72

Query: 75  AARAYDVAAYCLKGRKAQLNFPDKVEAL-PRPSTRAARDIQEAAAKAAHAGLI------- 126
           AA+AYDVAAYCLKG KAQLNFPD+V  L P PS+  ARDIQ AAAKAAH  ++       
Sbjct: 73  AAKAYDVAAYCLKGCKAQLNFPDEVHRLPPLPSSCTARDIQAAAAKAAHMMMVQAASADS 132

Query: 127 ----SSEKSDVSESDGDDFWGEIELPELMNGGWYSNSCGWTFSCDTTSTWIDEDAQPQEQ 182
               SS  SD   S GDDFWGEIELPEL+NG W+++           + W + +  P  Q
Sbjct: 133 PEKSSSITSDCDGSGGDDFWGEIELPELLNGKWWASD-------RHVTPWPETELPP--Q 183

Query: 183 QPPSMACL 190
            P + ACL
Sbjct: 184 LPFTTACL 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064277|ref|XP_002301414.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|224076068|ref|XP_002335832.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372087|gb|ABQ62975.1| TINY-like protein [Populus trichocarpa] gi|222835844|gb|EEE74279.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222843140|gb|EEE80687.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  188 bits (478), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 117/182 (64%), Positives = 133/182 (73%), Gaps = 19/182 (10%)

Query: 22  TAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDV 81
           T +    +++  G RHP YRGVRKRRWGKWVSEIREPRKK+RIWLGSFPVPEMAA+AYDV
Sbjct: 2   TRLQIPDTTRGSGNRHPAYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDV 61

Query: 82  AAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLI----SSEKSDVSESD 137
           AAYCLKGRKAQLNFP++V+ LP PST  AR IQ AAAKAAH+ LI    SSE ++   SD
Sbjct: 62  AAYCLKGRKAQLNFPEEVDDLPIPSTCTARAIQAAAAKAAHSVLIPMKKSSETNNGGGSD 121

Query: 138 ----GDDFWGEIELPELM--NGGWYSNSCGW--TFSCDTTSTWIDEDAQPQ-EQQPPSMA 188
               GDDFWGEIELPEL+  N G+  +SCGW  T + D  STW     QP  E   PSMA
Sbjct: 122 GEVAGDDFWGEIELPELLLSNSGYSWDSCGWNTTLASD-NSTW-----QPDGEGLQPSMA 175

Query: 189 CL 190
           CL
Sbjct: 176 CL 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571250|ref|XP_003553792.1| PREDICTED: ethylene-responsive transcription factor ERF023-like [Glycine max]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/168 (67%), Positives = 129/168 (76%), Gaps = 13/168 (7%)

Query: 33  GGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQ 92
           GGTRHPVYRGVRKRRWGKWVSEIREPRKK RIWLGSFPVPEMAARAYDVAAYCLKGRKA 
Sbjct: 21  GGTRHPVYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPVPEMAARAYDVAAYCLKGRKAH 80

Query: 93  LNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISS--EKSDVS----ESDGDDFWGEIE 146
           LNFPD+V++LP PS+R+ARDIQ AAA+AA     S   EKS ++    +S GDDFWGEIE
Sbjct: 81  LNFPDEVDSLPLPSSRSARDIQAAAAQAARMMKASGNDEKSGIASDDGDSCGDDFWGEIE 140

Query: 147 LPELMNG----GWYSNSCGWTFSCDTTSTWIDEDAQPQEQQPPSMACL 190
           LPELM+G    G  + +  WT S D  + W +E+  P  QQP  MACL
Sbjct: 141 LPELMDGECCWGCPAGASSWTSSGD-LAEWPEEELSP--QQPLFMACL 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842988|ref|XP_002889375.1| hypothetical protein ARALYDRAFT_470149 [Arabidopsis lyrata subsp. lyrata] gi|297335217|gb|EFH65634.1| hypothetical protein ARALYDRAFT_470149 [Arabidopsis lyrata subsp. lyrata]

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/190 (57%), Positives = 126/190 (66%), Gaps = 14/190 (7%)

Query: 5   PYTYTEHELTDSATATATAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRI 64
           P T +E   T SA  + +   +++SS T   RHPVY GVRKRRWGKWVSEIREPRKK+RI
Sbjct: 7   PLTNSEPTATASAVKSCSGGGKETSSTT---RHPVYHGVRKRRWGKWVSEIREPRKKSRI 63

Query: 65  WLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQ-EAAAKAAHA 123
           WLGSFPVPEMAA+AYDVAA+CLKGRKAQLNFPD+++ LPRPST   RDIQ  AA  A   
Sbjct: 64  WLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPDEIDDLPRPSTCTPRDIQVAAAKAANAV 123

Query: 124 GLISSEKSDVSE-SDGDDFWGEIELPELM--NGGWYSNSCGWTFSCDTTSTWIDEDAQPQ 180
            +I     DV+E  DGDDFW  IELPELM   GGW        F     +TW+ +    Q
Sbjct: 124 KIIKMGDDDVAEIDDGDDFWEGIELPELMMTGGGWSPEP----FVAGDDATWLVDGDLYQ 179

Query: 181 EQQPPSMACL 190
            Q    MACL
Sbjct: 180 YQ---FMACL 186

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2035257	192	AT1G01250 [Arabidopsis thalian	0.947	0.937	0.579	1.1e-48
TAIR|locus:2144296	236	TINY2 "AT5G11590" [Arabidopsis	0.647	0.521	0.552	3e-33
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.621	0.541	0.596	2e-31
TAIR|locus:2129111	179	AT4G16750 [Arabidopsis thalian	0.652	0.692	0.527	7.1e-29
TAIR|locus:2043495	225	ESE2 "ethylene and salt induci	0.563	0.475	0.550	9.6e-29
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.573	0.369	0.576	1.5e-28
TAIR|locus:2103301	256	AT3G60490 [Arabidopsis thalian	0.736	0.546	0.476	1.5e-28
TAIR|locus:2094897	236	AT3G16280 [Arabidopsis thalian	0.531	0.427	0.582	6.4e-28
TAIR|locus:2044845	184	HRD "HARDY" [Arabidopsis thali	0.510	0.527	0.612	7.3e-27
TAIR|locus:2195985	244	AT1G77200 [Arabidopsis thalian	0.589	0.459	0.547	1.2e-26

TAIR|locus:2035257 AT1G01250 [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 113/195 (57%), Positives = 129/195 (66%)

Query:     1 MEQQPYTYTEHELTDSATATATAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRK 60
             +   P T  E   T SA  +     +++SS T  TRHPVY GVRKRRWGKWVSEIREPRK
Sbjct:     8 LSSPPVTNNEPTATASAVKSCGGGGKETSSST--TRHPVYHGVRKRRWGKWVSEIREPRK 65

Query:    61 KTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKA 120
             K+RIWLGSFPVPEMAA+AYDVAA+CLKGRKAQLNFP+++E LPRPST   RDIQ AAAKA
Sbjct:    66 KSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAAAKA 125

Query:   121 AHA-GLISSEKSDVSE-SDGDDFWGEIELPELM--NGGWYSNSCGWTFSCDTTSTW-IDE 175
             A+A  +I     DV+   DGDDFW  IELPELM   GGW        F     +TW +D 
Sbjct:   126 ANAVKIIKMGDDDVAGIDDGDDFWEGIELPELMMSGGGWSPEP----FVAGDDATWLVDG 181

Query:   176 DAXXXXXXXXSMACL 190
             D          MACL
Sbjct:   182 DLYQYQF----MACL 192

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2144296 TINY2 "AT5G11590" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
 Identities = 69/125 (55%), Positives = 86/125 (68%)

Query:    14 TDSATATATAIHRKSSSQTG--GTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPV 71
             +DS +  + A   +  ++ G    +HPVYRGVR R WGKWVSEIREPRKK+RIWLG+FP 
Sbjct:    23 SDSVSDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPT 82

Query:    72 PEMAARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKS 131
             PEMAARA+DVAA  +KG  A LNFP+  ++ PRP + + RDIQ AA KAAH    +S  S
Sbjct:    83 PEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTTSFSS 142

Query:   132 DVSES 136
               S S
Sbjct:   143 STSSS 147

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 71/119 (59%), Positives = 81/119 (68%)

Query:    16 SATATATAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMA 75
             SA        +K   +  G +HPVYRGVRKR WGKWVSEIREPRKK+RIWLG+FP PEMA
Sbjct:    13 SAVRQENEEEKKKPVKDSG-KHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMA 71

Query:    76 ARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVS 134
             ARA+DVAA  +KG  A LNFPD   + PRPS+ + RDIQ AA KAAH     S  S  S
Sbjct:    72 ARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSSS 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

TAIR|locus:2129111 AT4G16750 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 68/129 (52%), Positives = 88/129 (68%)

Query:    26 RKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYC 85
             +  + Q G ++ P +RGVR R+WGKWVSEIREPRKK+RIWLG+F  PEMAARA+DVAA  
Sbjct:    26 KTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALA 85

Query:    86 LKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEK--SDVSESD-GDDFW 142
             +KG  A LNFP+    LPRP++   +DIQEAAA AA     + E   S V+ S   DD +
Sbjct:    86 IKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAAAVDWKAPESPSSTVTSSPVADDAF 145

Query:   143 GEIELPELM 151
              +  LP+L+
Sbjct:   146 SD--LPDLL 152

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2043495 ESE2 "ethylene and salt inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
 Identities = 60/109 (55%), Positives = 74/109 (67%)

Query:    13 LTDSATATATAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVP 72
             + DS  +      +K   +T      VYRG R R WGKWVSEIREPRKK+RIWLG+FP  
Sbjct:     1 MVDSHGSDTECSSKKKKEKT--KEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTA 58

Query:    73 EMAARAYDVAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAA 121
             EMAARA+DVAA  +KG  A LNFP+  + LPRP + + +DIQ AAA+AA
Sbjct:    59 EMAARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQAAAAEAA 107

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 64/111 (57%), Positives = 75/111 (67%)

Query:    27 KSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCL 86
             K     GG +HP YRGVR R WGKWVSEIREPRKK+RIWLG++P  EMAARA+DVAA  +
Sbjct:    87 KRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAI 146

Query:    87 KGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVSESD 137
             KG  A LNFP     LPRP T + +DIQ AA+ AA         +DVS S+
Sbjct:   147 KGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAAVNW--QDSVNDVSNSE 195

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2103301 AT3G60490 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 70/147 (47%), Positives = 92/147 (62%)

Query:    26 RKSSSQTGGTRHPV-YRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAY 84
             R+ S+ +   ++P  YRGVR R WGKWVSEIREPRKK+RIWLG++P  EMAARA+DVAA 
Sbjct:    56 RRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAAL 115

Query:    85 CLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVSESDGDDFWGE 144
              +KG    LNFP+    LPRP + + +DIQ AA KAA A   +  K  + +   D    E
Sbjct:   116 AIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAAEA--TTWHKPVIDKKLAD----E 169

Query:   145 IELPELMNGGWYSNSCGWTFSCDTTST 171
             +   EL++    S S  + FS DT+ T
Sbjct:   170 LSHSELLSTAQSSTSSSFVFSSDTSET 196

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2094897 AT3G16280 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 60/103 (58%), Positives = 75/103 (72%)

Query:    28 SSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLK 87
             S+S +   +HPVYRGVR R WGKWVSEIR+PRKKTRIWLG+F   +MAARA+DVAA  +K
Sbjct:    49 SASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIK 108

Query:    88 GRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEK 130
             G  A LNFP+     PRP++ +  DIQ AAA+AA   ++  EK
Sbjct:   109 GSSAVLNFPELASLFPRPASSSPHDIQTAAAEAA--AMVVEEK 149

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2044845 HRD "HARDY" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 60/98 (61%), Positives = 74/98 (75%)

Query:    27 KSSSQTGGTRHPVYRGVRKRR-WGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYC 85
             + +S+  G RHP+YRGVR+R+   KWVSEIREPRK  RIWLG+F  PEMAA AYDVAA  
Sbjct:     2 QGTSKDNGGRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALA 61

Query:    86 LKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHA 123
             LKG +A+LNFP+ V +LP P++ +  DIQ AAA AA A
Sbjct:    62 LKGSQAELNFPNSVSSLPAPTSMSPADIQAAAASAAAA 99

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2195985 AT1G77200 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 64/117 (54%), Positives = 78/117 (66%)

Query:    25 HRKSSSQTGGTRH----PVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYD 80
             H++ S +T   +     P YRGVR R WGKWVSEIREPRKK+RIWLG+F  PEMAARA+D
Sbjct:    24 HQQDSHRTNTKKRVRSDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHD 83

Query:    81 VAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVSESD 137
              AA  +KG  A LNFP+    LPRP++ + RD+Q AAA AA A   S   S +  SD
Sbjct:    84 AAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAA-AMDFSPSSSSLVVSD 139

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1ECI2	ERF23_ARATH	No assigned EC number	0.5618	0.9526	0.9427	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	8e-32
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-29
pfam00847	53	pfam00847, AP2, AP2 domain	2e-12

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  109 bits (274), Expect = 8e-32
 Identities = 37/57 (64%), Positives = 45/57 (78%)

Query: 40 YRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFP 96
          YRGVR+R WGKWV+EIR+P K  R+WLG+F   E AARAYD AA+  +GR A+LNFP
Sbjct: 2  YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  103 bits (258), Expect = 2e-29
 Identities = 38/58 (65%), Positives = 43/58 (74%)

Query: 40 YRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPD 97
          YRGVR+R WGKWV+EIR+P    RIWLG+F   E AARAYD AA  L+G  A LNFPD
Sbjct: 3  YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 38 PVYRGVRKR-RWGKWVSEIREP--RKKTRIWLGSFPVPEMAARAYDVAAYCLKG 88
            Y+GVR   RWG+WV+EIR+P  +KK R  LG+F   E AARA   A   L+G
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.83
PHA00280	121	putative NHN endonuclease	99.67
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.15

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=1.4e-21  Score=134.96  Aligned_cols=61  Identities=62%  Similarity=1.107  Sum_probs=57.5

Q ss_pred             CceeEEEeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 029627           38 PVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDK   98 (190)
Q Consensus        38 s~yRGVr~r~~GkW~AeI~~p~~~kri~LGtF~T~EeAA~AYD~Aa~~l~G~~A~lNFp~~   98 (190)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+|||+.|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            5699999988899999999966689999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.83  E-value=1.4e-20  Score=131.65  Aligned_cols=62  Identities=60%  Similarity=1.148  Sum_probs=58.8

Q ss_pred             ceeEEEeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 029627           39 VYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKVE  100 (190)
Q Consensus        39 ~yRGVr~r~~GkW~AeI~~p~~~kri~LGtF~T~EeAA~AYD~Aa~~l~G~~A~lNFp~~~~  100 (190)
                      +|+||+++++|||+|+|+++.+++++|||+|+|+||||.|||.++++++|.++.+|||.+.+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            49999988899999999999899999999999999999999999999999999999998754

>PHA00280 putative NHN endonuclease

Probab=99.67  E-value=1.9e-16  Score=124.77  Aligned_cols=82  Identities=15%  Similarity=0.143  Sum_probs=69.8

Q ss_pred             CCCCCCChhhhhhhhhhhhhhhhcCCCCCCCCCCCCceeEEEeC-CCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHHH
Q 029627            3 QQPYTYTEHELTDSATATATAIHRKSSSQTGGTRHPVYRGVRKR-RWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDV   81 (190)
Q Consensus         3 ~~p~~~~~~nlr~s~~r~~t~~~r~~~~~~~~~~~s~yRGVr~r-~~GkW~AeI~~p~~~kri~LGtF~T~EeAA~AYD~   81 (190)
                      ..|.+++.+||+.++..++..|++.++.     ++|+|+||++. ..|||+|+|++  .|++++||.|+|+|+|+.||+ 
T Consensus        37 g~~~dnri~NLr~~T~~eN~~N~~~~~~-----N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-  108 (121)
T PHA00280         37 GNPLNDALDNLRLALPKENSWNMKTPKS-----NTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-  108 (121)
T ss_pred             CCCCCCcHHHhhhcCHHHHhcccCCCCC-----CCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-
Confidence            3577888899999999888777655544     45569999977 67999999999  999999999999999999997 


Q ss_pred             HHHHhcCCCCC
Q 029627           82 AAYCLKGRKAQ   92 (190)
Q Consensus        82 Aa~~l~G~~A~   92 (190)
                      ++.+|||++|.
T Consensus       109 ~~~~lhGeFa~  119 (121)
T PHA00280        109 TRRELHGQFAR  119 (121)
T ss_pred             HHHHHhhcccc
Confidence            77889999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.15  E-value=7.6e-11  Score=79.34  Aligned_cols=52  Identities=35%  Similarity=0.477  Sum_probs=45.2

Q ss_pred             CceeEEEeC-CCCcEEEEEecCCC---CeEEeecCCCCHHHHHHHHHHHHHHhcCC
Q 029627           38 PVYRGVRKR-RWGKWVSEIREPRK---KTRIWLGSFPVPEMAARAYDVAAYCLKGR   89 (190)
Q Consensus        38 s~yRGVr~r-~~GkW~AeI~~p~~---~kri~LGtF~T~EeAA~AYD~Aa~~l~G~   89 (190)
                      |+|+||+++ ..++|+|.|+++..   +++++||.|+++++|++|++.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            569999877 57999999999421   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		7e-13
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-12

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 40  YRGVRKRRWGKWVSEIREPRKK-TRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDK 98
           YRGVR+R WGK+ +EIR+P K   R+WLG+F   E AA AYD AA+ ++G +A LNFP +
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 65
Query: 99  VEA 101
           V +
Sbjct: 66  VNS 68

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 40 YRGVRKRRWGKWVSEIREPRKK-TRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDK 98
          YRGVR+R WGK+ +EIR+P K   R+WLG+F   E AA AYD AA+ ++G +A LNFP +
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62
Query: 99 V 99
          V
Sbjct: 63 V 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
1gcc_A	63	Ethylene responsive element binding factor 1; tran	3e-28

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 99.3 bits (248), Expect = 3e-28
 Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 40 YRGVRKRRWGKWVSEIREPRKK-TRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDK 98
          YRGVR+R WGK+ +EIR+P K   R+WLG+F   E AA AYD AA+ ++G +A LNFP +
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62

Query: 99 V 99
          V
Sbjct: 63 V 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	96.44
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	88.85

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=6e-26  Score=158.82  Aligned_cols=61  Identities=56%  Similarity=1.030  Sum_probs=57.5

Q ss_pred             ceeEEEeCCCCcEEEEEecCCC-CeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 029627           39 VYRGVRKRRWGKWVSEIREPRK-KTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKV   99 (190)
Q Consensus        39 ~yRGVr~r~~GkW~AeI~~p~~-~kri~LGtF~T~EeAA~AYD~Aa~~l~G~~A~lNFp~~~   99 (190)
                      +||||+++++|||+|+|++|.+ +++||||+|+|+||||+|||.|+++++|.++.||||+++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            5999999999999999999874 799999999999999999999999999999999999863

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=96.44  E-value=0.00011  Score=58.62  Aligned_cols=69  Identities=7%  Similarity=-0.053  Sum_probs=51.3

Q ss_pred             CCCCCCChhhhhhhhhhhhhhhhcCCCCCCCCCCCCceeEEEeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHH
Q 029627            3 QQPYTYTEHELTDSATATATAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYD   80 (190)
Q Consensus         3 ~~p~~~~~~nlr~s~~r~~t~~~r~~~~~~~~~~~s~yRGVr~r~~GkW~AeI~~p~~~kri~LGtF~T~EeAA~AYD   80 (190)
                      ..+.+++.+||++++..++..++..+...      ..++||.+...++|.+.|..  . +.++||.|+|.+|||++|.
T Consensus        78 g~k~nn~~~NL~~~t~~eN~~~~~~~~~~------~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           78 GNKDNNLSTNLRWVTQKINVENQMSRGTL------NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             SCTTCCCGGGEEEECHHHHHHHHHHHTCC------CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             CCCCCCCHHHcEECCHHHHhhcccccCcc------cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            45788999999999999997766543321      11467644334668888888  4 5678999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=88.85  E-value=0.21  Score=35.89  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=19.7

Q ss_pred             CCCCceeEEEeC-CCCcEEEEEecC
Q 029627           35 TRHPVYRGVRKR-RWGKWVSEIREP   58 (190)
Q Consensus        35 ~~~s~yRGVr~r-~~GkW~AeI~~p   58 (190)
                      ..+|+|+||++. +.+.|+|.-.+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            467889999887 669999999984

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	3e-29

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  100 bits (252), Expect = 3e-29
 Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 40 YRGVRKRRWGKWVSEIREPRKK-TRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDK 98
          YRGVR+R WGK+ +EIR+P K   R+WLG+F   E AA AYD AA+ ++G +A LNFP +
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62

Query: 99 V 99
          V
Sbjct: 63 V 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.92

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=5.3e-26  Score=157.95  Aligned_cols=60  Identities=53%  Similarity=1.033  Sum_probs=56.1

Q ss_pred             ceeEEEeCCCCcEEEEEecC-CCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 029627           39 VYRGVRKRRWGKWVSEIREP-RKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDK   98 (190)
Q Consensus        39 ~yRGVr~r~~GkW~AeI~~p-~~~kri~LGtF~T~EeAA~AYD~Aa~~l~G~~A~lNFp~~   98 (190)
                      +||||+++++|||+|+|++| .++++||||+|+|+||||+|||+|+++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            49999999899999999997 4568999999999999999999999999999999999975