Citrus Sinensis ID: 029634

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
MKLKWQLVLFATAILSVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGWSEYCCNQTISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWCVYRSPSP
ccHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccEccccccccccHHHccccccHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEccccccccccccccccccccccccEcccccEEEEEEccccccc
MKLKWQLVLFATAILSVLVIVhgdessvkPLVKIVKgkklcdkgweckgwseyccnQTISDYFQTYQFEnlfakrntpvahavgfwdyHSFITAAalyqphgfgtsagklMGQKEVAAFLGhvgsktscgygvatggplawglcynkemspnqiycdddfkytypctpgvsyhgrgalplywcvyrspsp
MKLKWQLVLFATAILSVLVIvhgdessvkplvkivkgkklcDKGWECKGWSEYCCNQTISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWCVYRSPSP
MKLKWQLVLFATAILSVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGWSEYCCNQTISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWCVYRSPSP
**LKWQLVLFATAILSVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGWSEYCCNQTISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWCVY*****
****WQLVLFATAILSVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGWSEYCCNQTISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWCVYRSP**
MKLKWQLVLFATAILSVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGWSEYCCNQTISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWCVYRSPSP
MKLKWQLVLFATAILSVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGWSEYCCNQTISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWCVYRSPS*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKLKWQLVLFATAILSVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGWSEYCCNQTISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWCVYRSPSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query190 2.2.26 [Sep-21-2011]
Q9LSP9 333 Chitinase-like protein 2 yes no 0.910 0.519 0.803 2e-79
Q9MA41 321 Chitinase-like protein 1 no no 0.905 0.535 0.704 7e-73
P19171 335 Basic endochitinase B OS= no no 0.631 0.358 0.379 2e-18
P85084 243 Endochitinase OS=Carica p N/A no 0.631 0.493 0.387 5e-18
Q09023 322 Endochitinase CH25 OS=Bra N/A no 0.631 0.372 0.362 3e-17
Q5NB11 290 Chitinase 10 OS=Oryza sat no no 0.589 0.386 0.391 6e-17
Q39799 324 Endochitinase 1 OS=Gossyp N/A no 0.631 0.370 0.368 3e-16
Q39785 302 Endochitinase 2 (Fragment N/A no 0.631 0.397 0.368 3e-16
P06215 328 Endochitinase OS=Phaseolu N/A no 0.921 0.533 0.277 6e-16
Q05537 246 Basic endochitinase (Frag N/A no 0.631 0.487 0.362 2e-15
>sp|Q9LSP9|CTL2_ARATH Chitinase-like protein 2 OS=Arabidopsis thaliana GN=CTL2 PE=2 SV=1 Back     alignment and function desciption
 Score =  294 bits (753), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/173 (80%), Positives = 149/173 (86%)

Query: 10  FATAILSVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGWSEYCCNQTISDYFQTYQFE 69
           F T  L          S+ KPLVKIVKGKKLCDKGWECKGWSEYCCN TISD+F+TYQFE
Sbjct: 19  FQTGTLVNAEDSEPSSSTRKPLVKIVKGKKLCDKGWECKGWSEYCCNHTISDFFETYQFE 78

Query: 70  NLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSC 129
           NLF+KRN+PVAHAVGFWDY SFITAAA YQP GFGT+  KL G KEVAAFLGHVGSKTSC
Sbjct: 79  NLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKLQGMKEVAAFLGHVGSKTSC 138

Query: 130 GYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYW 182
           GYGVATGGPLAWGLCYNKEMSP+Q+YCDD +K TYPCTPGVSYHGRGALP+YW
Sbjct: 139 GYGVATGGPLAWGLCYNKEMSPDQLYCDDYYKLTYPCTPGVSYHGRGALPVYW 191
No chitinase activity (By similarity). Required for proper cell wall biosynthesis in etiolated seedlings. Prevents lignin accumulation in hypocotyls.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9MA41|CTL1_ARATH Chitinase-like protein 1 OS=Arabidopsis thaliana GN=CTL1 PE=1 SV=1 Back     alignment and function description
>sp|P19171|CHIB_ARATH Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3 Back     alignment and function description
>sp|P85084|CHIT_CARPA Endochitinase OS=Carica papaya PE=1 SV=1 Back     alignment and function description
>sp|Q09023|CHI2_BRANA Endochitinase CH25 OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q5NB11|CHI10_ORYSJ Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1 Back     alignment and function description
>sp|Q39799|CHI1_GOSHI Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1 Back     alignment and function description
>sp|Q39785|CHI2_GOSHI Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2 Back     alignment and function description
>sp|P06215|CHIT_PHAVU Endochitinase OS=Phaseolus vulgaris PE=1 SV=1 Back     alignment and function description
>sp|Q05537|CHID_SOLLC Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query190
119657122 316 CLT3 [Gossypium barbadense] 0.936 0.563 0.813 4e-84
255556326 324 chitinase, putative [Ricinus communis] g 0.868 0.509 0.869 1e-83
34016875 318 chitinase-like protein [Gossypium hirsut 0.936 0.559 0.807 2e-83
34016877 316 chitinase-like protein [Gossypium hirsut 0.942 0.566 0.818 6e-83
222139390 322 class II chitinase [Pyrus pyrifolia] 0.957 0.565 0.793 2e-82
119657124 316 CLT4 [Gossypium barbadense] 0.942 0.566 0.813 1e-81
449503856 322 PREDICTED: chitinase-like protein 2-like 0.878 0.518 0.832 2e-81
225431904 321 PREDICTED: chitinase-like protein 2 [Vit 0.915 0.542 0.794 1e-79
356529237 317 PREDICTED: chitinase-like protein 2-like 0.910 0.545 0.793 2e-79
255637276 317 unknown [Glycine max] 0.910 0.545 0.793 3e-79
>gi|119657122|gb|ABL86685.1| CLT3 [Gossypium barbadense] Back     alignment and taxonomy information
 Score =  315 bits (808), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 148/182 (81%), Positives = 162/182 (89%), Gaps = 4/182 (2%)

Query: 1   MKLKWQLVLFATAILSVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGWSEYCCNQTIS 60
           M+ KW L     A+++V  +    + SVKPLVKIVKGKKLCDKGWECKGWS++CCNQTIS
Sbjct: 1   MEAKWLLFFTMAALMAVANV----QESVKPLVKIVKGKKLCDKGWECKGWSQFCCNQTIS 56

Query: 61  DYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFL 120
           DYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAA YQPHGFGT+ GKL   KEVAAFL
Sbjct: 57  DYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAAQYQPHGFGTTGGKLQSMKEVAAFL 116

Query: 121 GHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPL 180
           GHVGSKTSCGYGVATGGPLAWGLCYNKEMSP+++YCDD +KYTYPCTPGVSYHGRGALP+
Sbjct: 117 GHVGSKTSCGYGVATGGPLAWGLCYNKEMSPSKLYCDDYYKYTYPCTPGVSYHGRGALPI 176

Query: 181 YW 182
           YW
Sbjct: 177 YW 178

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556326|ref|XP_002519197.1| chitinase, putative [Ricinus communis] gi|223541512|gb|EEF43061.1| chitinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|34016875|gb|AAQ56598.1| chitinase-like protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|34016877|gb|AAQ56599.1| chitinase-like protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|222139390|gb|ACM45714.1| class II chitinase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|119657124|gb|ABL86686.1| CLT4 [Gossypium barbadense] Back     alignment and taxonomy information
>gi|449503856|ref|XP_004162209.1| PREDICTED: chitinase-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225431904|ref|XP_002276563.1| PREDICTED: chitinase-like protein 2 [Vitis vinifera] gi|147853271|emb|CAN78546.1| hypothetical protein VITISV_034797 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356529237|ref|XP_003533202.1| PREDICTED: chitinase-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|255637276|gb|ACU18968.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query190
TAIR|locus:2198688 321 POM1 "POM-POM1" [Arabidopsis t 0.905 0.535 0.704 1.1e-71
TAIR|locus:2204918 272 AT1G02360 [Arabidopsis thalian 0.589 0.411 0.365 4.6e-18
TAIR|locus:2133412 280 AT4G01700 [Arabidopsis thalian 0.589 0.4 0.373 4.6e-18
UNIPROTKB|Q7DNA1 340 Cht2 "Chitinase 2" [Oryza sati 0.573 0.320 0.389 3e-17
UNIPROTKB|P24626 320 Cht3 "Chitinase 3" [Oryza sati 0.573 0.340 0.350 7.8e-17
UNIPROTKB|Q9FRV1 321 rsca "Basic endochitinase A" [ 0.573 0.339 0.371 7.8e-17
UNIPROTKB|Q9FRV0 266 rscc "Basic endochitinase C" [ 0.626 0.447 0.333 7.7e-16
UNIPROTKB|P25765 326 Cht12 "Chitinase 12" [Oryza sa 0.573 0.334 0.336 2.6e-13
UNIPROTKB|Q42993 323 Cht1 "Chitinase 1" [Oryza sati 0.573 0.337 0.321 1.2e-12
UNIPROTKB|A7XQ02 415 A7XQ02 "Mulatexin" [Morus alba 0.610 0.279 0.289 3.9e-06
TAIR|locus:2198688 POM1 "POM-POM1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 124/176 (70%), Positives = 150/176 (85%)

Query:     7 LVLFATAILSVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGWSEYCCNQTISDYFQTY 66
             LVL A + L++  + +G++ ++K  VK V+G K+C +GWEC  WS+YCCNQTISDYFQ Y
Sbjct:    12 LVLLAVSFLAL--VANGEDKTIK--VKKVRGNKVCTQGWECSWWSKYCCNQTISDYFQVY 67

Query:    67 QFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSK 126
             QFE LF+KRNTP+AHAVGFWDY SFITAAAL++P GFGT+ GKLMGQKE+AAFLGHV SK
Sbjct:    68 QFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKLMGQKEMAAFLGHVASK 127

Query:   127 TSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYW 182
             TSCGYGVATGGPLAWGLCYN+EMSP Q YCD+ +K+ YPC+PG  Y+GRGALP+YW
Sbjct:   128 TSCGYGVATGGPLAWGLCYNREMSPMQSYCDESWKFKYPCSPGAEYYGRGALPIYW 183
GO:0004568 "chitinase activity" evidence=IEA;ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA
GO:0009408 "response to heat" evidence=IMP
GO:0009735 "response to cytokinin stimulus" evidence=IMP
GO:0009809 "lignin biosynthetic process" evidence=IGI
GO:0043255 "regulation of carbohydrate biosynthetic process" evidence=IGI
GO:0009414 "response to water deprivation" evidence=IMP
GO:0009651 "response to salt stress" evidence=RCA;IMP
GO:0010337 "regulation of salicylic acid metabolic process" evidence=IMP
GO:0010167 "response to nitrate" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0030244 "cellulose biosynthetic process" evidence=IMP
GO:0030247 "polysaccharide binding" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007389 "pattern specification process" evidence=RCA
GO:0008361 "regulation of cell size" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009269 "response to desiccation" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0009805 "coumarin biosynthetic process" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=IMP;RCA
GO:0009926 "auxin polar transport" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010015 "root morphogenesis" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0016051 "carbohydrate biosynthetic process" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0030243 "cellulose metabolic process" evidence=RCA
GO:0040007 "growth" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0010053 "root epidermal cell differentiation" evidence=IMP
TAIR|locus:2204918 AT1G02360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133412 AT4G01700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7DNA1 Cht2 "Chitinase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P24626 Cht3 "Chitinase 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FRV1 rsca "Basic endochitinase A" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FRV0 rscc "Basic endochitinase C" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms
UNIPROTKB|P25765 Cht12 "Chitinase 12" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q42993 Cht1 "Chitinase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A7XQ02 A7XQ02 "Mulatexin" [Morus alba (taxid:3498)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LSP9CTL2_ARATHNo assigned EC number0.80340.91050.5195yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
cd00325 230 cd00325, chitinase_glyco_hydro_19, Glycoside hydro 1e-41
pfam00182 232 pfam00182, Glyco_hydro_19, Chitinase class I 2e-24
>gnl|CDD|238199 cd00325, chitinase_glyco_hydro_19, Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information 
 Score =  139 bits (353), Expect = 1e-41
 Identities = 47/120 (39%), Positives = 61/120 (50%), Gaps = 5/120 (4%)

Query: 63  FQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGH 122
                FE +F+ RN     A GF+ Y +FITAA  +   GFGT+      ++E+AAF  H
Sbjct: 1   VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFP--GFGTTGDDDTRKREIAAFFAH 58

Query: 123 VGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYW 182
              +T  G  +A  GP AWG C   E  P   YCD      +PC PG  Y+GRG + L W
Sbjct: 59  TSHETGGGCYIAPDGPYAWGYCDKSETGPPSSYCDPA---QWPCAPGKKYYGRGPIQLSW 115

Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. Length = 230
>gnl|CDD|201064 pfam00182, Glyco_hydro_19, Chitinase class I Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 190
KOG4742286 consensus Predicted chitinase [General function pr 100.0
PF00182 232 Glyco_hydro_19: Chitinase class I; InterPro: IPR00 100.0
cd00325 230 chitinase_glyco_hydro_19 Glycoside hydrolase famil 100.0
cd00442105 lysozyme_like lysozyme_like domain. This contains 98.94
COG3179206 Predicted chitinase [General function prediction o 98.24
PF0018740 Chitin_bind_1: Chitin recognition protein; InterPr 95.96
smart0027038 ChtBD1 Chitin binding domain. 94.78
cd0003540 ChtBD1 Chitin binding domain, involved in recognit 90.51
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 87.75
>KOG4742 consensus Predicted chitinase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-56  Score=390.41  Aligned_cols=172  Identities=34%  Similarity=0.611  Sum_probs=158.2

Q ss_pred             HHHHHHHHhCCCCCcccceeeecCCcCCCCCccccCCCCcccCCCcccccCHHHHHHHHhcCCCCCCcCCCceeHHHHHH
Q 029634           14 ILSVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGWSEYCCNQTISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFIT   93 (190)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~g~~~C~~g~ccs~~~~yc~~~~v~~iit~~~F~~lfp~rn~~~c~a~gFYTY~~Fi~   93 (190)
                      ++.++.++..++.+ ...++...+|..|..| +|+.+.++|..++|+++||+++||+||+++|+.+||++|||||++||.
T Consensus        19 ~~~~~~~~~~q~~~-~~~~~~~~~~~~c~~g-~c~~~~~~~p~~~i~~~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~   96 (286)
T KOG4742|consen   19 LLQSSSTVASQNCG-ASNTTPPYCKFGCGPG-PCSGPGPPNPASKIESSVTPELFEDIFSKVGSGWCPAKGFYTYDAFII   96 (286)
T ss_pred             HHHHHHhhhcccCC-CCccccccccCCCCCC-CCCCCCCCCCcccccccccHHHHHHHhccccCCCCCCCCCccccHHHH
Confidence            33344556665554 3447889999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCcccCcCcchhhhHHHHhhhhhcccCCCCCCcCCCCCcccceeeeeecCC-CCCCcCCCCCCCCCCCCCCcc
Q 029634           94 AAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSP-NQIYCDDDFKYTYPCTPGVSY  172 (190)
Q Consensus        94 Aa~~fp~~~Fg~tG~~~~~krElAAFlAhvshET~gg~~~a~~gp~~wGlcy~~E~~~-~~~YC~~~~~~~yPCapGk~Y  172 (190)
                      |++.||  +|++||++.+.||||||||||++|||+|||..+++|||+|+|||++|+++ ...||+.+++..|||++||.|
T Consensus        97 Aa~sfp--~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~~~~fc~~~e~s~~~~~YC~~s~~~~yPCs~gk~Y  174 (286)
T KOG4742|consen   97 AARSFP--EFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPFYWGFCYKEEISPSSGRYCDASNQITYPCSPGKSY  174 (286)
T ss_pred             HHHhcc--cccccCcccccchhhhhhhhhheecccCcccccCCCccccCcccccccChhhhccCCcccceEeecCCCCcc
Confidence            999999  99999999999999999999999999999999999999999999999998 789999987544999999999


Q ss_pred             ccCCCCCCcCcCCCcCC
Q 029634          173 HGRGALPLYWCVYRSPS  189 (190)
Q Consensus       173 yGRGpIQLSwNyNYg~a  189 (190)
                      |||||||||||||||+|
T Consensus       175 ~GRG~iQlsWNyNYG~a  191 (286)
T KOG4742|consen  175 YGRGPIQLSWNYNYGAA  191 (286)
T ss_pred             cccCcccccccccccHh
Confidence            99999999999999986

>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information
>cd00442 lysozyme_like lysozyme_like domain Back     alignment and domain information
>COG3179 Predicted chitinase [General function prediction only] Back     alignment and domain information
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e Back     alignment and domain information
>smart00270 ChtBD1 Chitin binding domain Back     alignment and domain information
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
3cql_A 243 Crystal Structure Of Gh Family 19 Chitinase From Ca 2e-19
2z37_A 244 Crystal Structure Of Brassica Juncea Chitinase Cata 1e-16
2z38_A 247 Crystal Structure Of Chloride Bound Brassica Juncea 1e-16
2z39_A 246 Crystal Structure Of Brassica Juncea Chitinase Cata 7e-16
1dxj_A 242 Structure Of The Chitinase From Jack Bean Length = 3e-15
3w3e_A 242 Structure Of Vigna Unguiculata Chitinase With Regul 6e-15
4dwx_A 244 Crystal Structure Of A Family Gh-19 Chitinase From 2e-14
1cns_A 243 Crystal Structure Of Chitinase At 1.91a Resolution 3e-13
2baa_A 243 The Refined Crystal Structure Of An Endochitinase F 8e-13
2dkv_A 309 Crystal Structure Of Class I Chitinase From Oryza S 9e-12
3hbd_A204 Class Iv Chitinase Structure From Picea Abies At 1. 2e-11
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya Length = 243 Back     alignment and structure 
Iteration: 1

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 59  ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAA 118
           I        F+ +   RN P   A GF+ Y +FI AA  +    FGT+    + ++E+AA
Sbjct: 2   IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFP--SFGTTGSTDVRKREIAA 59
Query: 119 FLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGAL 178
           FLG    +T+ G+  A  GP AWG C+ KE +P+  YC    +  YPC PG SY+GRG +
Sbjct: 60  FLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPR--YPCAPGKSYYGRGPI 117
Query: 179 PLYW 182
            L W
Sbjct: 118 QLSW 121
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 244 Back     alignment and structure
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 247 Back     alignment and structure
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module Glu234ala Mutant (bjchi3-e234a) Length = 246 Back     alignment and structure
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean Length = 242 Back     alignment and structure
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation Activity Of The Plant Cell Wall Length = 242 Back     alignment and structure
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds Length = 244 Back     alignment and structure
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution Length = 243 Back     alignment and structure
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution Length = 243 Back     alignment and structure
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa L. Japonica Length = 309 Back     alignment and structure
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a Length = 204 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
2z37_A 244 Chitinase; family 19, conformational changes, hydr 5e-28
3cql_A 243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 1e-25
1dxj_A 242 Class II chitinase; hydrolase, family 19 glycosida 8e-24
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 1e-17
2dkv_A 309 Chitinase; whole structure, oryza sativa L. japoni 7e-14
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 3e-12
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 8e-10
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Length = 244 Back     alignment and structure
 Score =  104 bits (260), Expect = 5e-28
 Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 59  ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAA 118
           +S      QF  +    N    HAVGF+ Y +FITAA  +    FG +    M +KE+AA
Sbjct: 2   LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFP--SFGNTGDLAMRKKEIAA 59

Query: 119 FLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGAL 178
           F G    +T+ G+  A  G   WG CY +E+  +  +CD +    +PC PG  Y+GRG +
Sbjct: 60  FFGQTSHETTGGWSGAPDGANTWGYCYKEEIDKSDPHCDSN-NLEWPCAPGKFYYGRGPM 118

Query: 179 PLYWC 183
            L W 
Sbjct: 119 MLSWN 123
>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Length = 243 Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Length = 242 Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} PDB: 3hbd_A 3hbh_A Length = 204 Back     alignment and structure
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Length = 309 Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Length = 204 Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Length = 265 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query190
2dkv_A 309 Chitinase; whole structure, oryza sativa L. japoni 100.0
3w3e_A 242 Cotyledoneous yieldin-like protein; alpha helical 100.0
3cql_A 243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 100.0
2z37_A 244 Chitinase; family 19, conformational changes, hydr 100.0
1dxj_A 242 Class II chitinase; hydrolase, family 19 glycosida 100.0
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 100.0
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 100.0
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 100.0
1wkx_A43 Hevein isoform 2; allergen, lectin, agglutinin-tox 96.63
2kus_A35 SM-AMP-1.1A; plant antimicrobial peptide, chitin-b 96.3
2lb7_A44 WAMP-1A, antimicrobial peptide 1A; antimicrobial p 96.29
1mmc_A30 AC-AMP2, antimicrobial peptide 2; antifungal antim 95.32
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 92.7
1p9g_A41 EAFP 2; antifungal peptide, atomic resolution, ant 92.61
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 91.97
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 89.58
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 85.69
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 82.22
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 81.09
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-56  Score=396.91  Aligned_cols=156  Identities=32%  Similarity=0.710  Sum_probs=146.4

Q ss_pred             cceeeecCCcCCCCCccccCC------CCcccC---------------------CCcccccCHHHHHHHHhcCCCCCCcC
Q 029634           30 PLVKIVKGKKLCDKGWECKGW------SEYCCN---------------------QTISDYFQTYQFENLFAKRNTPVAHA   82 (190)
Q Consensus        30 ~~~~~~~g~~~C~~g~ccs~~------~~yc~~---------------------~~v~~iit~~~F~~lfp~rn~~~c~a   82 (190)
                      .+|+.|+|++.||.++|||+|      ++||+.                     .+|++|||+++||+||||||++.||+
T Consensus         2 ~~cg~~~~~~~c~~~~Ccs~~G~Cg~t~~~Cg~gcq~~c~~~~~~~~~~~~~~~~~v~~iit~~~f~~~~~~rn~~~c~~   81 (309)
T 2dkv_A            2 EQCGAQAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSGCGPTPTPTPPSPSDGVGSIVPRDLFERLLLHRNDGACPA   81 (309)
T ss_dssp             CBCSTTTTTCCCGGGCEECTTSBEESSHHHHSTTCCBCSSCC------------CCGGGTSCHHHHHHHTTTTTCTTCTT
T ss_pred             CCcCCCCCCCcCCCCCcCcccccccCChHHhhccccccCCCCCCCCCCCCCCCCcchhhhccHHHHHHHhhcccccCCCc
Confidence            468889999999999999997      678821                     35889999999999999999999999


Q ss_pred             CCceeHHHHHHHHhhhCCCCcccCcCcchhhhHHHHhhhhhcccCCCCCCcCCCCCcccceeeeeecCCCCCCcCCCCCC
Q 029634           83 VGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKY  162 (190)
Q Consensus        83 ~gFYTY~~Fi~Aa~~fp~~~Fg~tG~~~~~krElAAFlAhvshET~gg~~~a~~gp~~wGlcy~~E~~~~~~YC~~~~~~  162 (190)
                      ++||||++||+|+++||  +|+++|+++++||||||||||++|||+|||.++|++||+|||||++|+++...||+.+.  
T Consensus        82 ~~fyty~~fi~Aa~~fp--~F~~tG~~~~~krelAaFLAq~~HETggg~~~~~~~~y~wG~~~~~E~~~~~~Yc~~~~--  157 (309)
T 2dkv_A           82 RGFYTYEAFLAAAAAFP--AFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSP--  157 (309)
T ss_dssp             TTCSCHHHHHHHHHTCT--TTTCSSSHHHHHHHHHHHHHHHHHHHCCCCTTCTTCGGGCTTCCSBCSSCSCCCCCCCS--
T ss_pred             CCcccHHHHHHHHHhhh--hhcccCCccccHHHHHHHHhhcchhcCCCcccCCCccccccceeeeeecCCCCCcCCCC--
Confidence            99999999999999999  99999999999999999999999999999999999999999999999998889999874  


Q ss_pred             CCCCCCCCccccCCCCCCcCcCCCcCC
Q 029634          163 TYPCTPGVSYHGRGALPLYWCVYRSPS  189 (190)
Q Consensus       163 ~yPCapGk~YyGRGpIQLSwNyNYg~a  189 (190)
                      +|||.+|++|||||||||||||||+++
T Consensus       158 ~~pcgdG~~Y~GRG~IQLT~~~NY~~~  184 (309)
T 2dkv_A          158 EWPCAPGRKYYGRGPIQLSFNFNYGPA  184 (309)
T ss_dssp             SSCCCTTCCCCCBTTTTBCSHHHHHHH
T ss_pred             CcccCCCCeeecCCcccccchhhHHHH
Confidence            699999999999999999999999864
>3w3e_A Cotyledoneous yieldin-like protein; alpha helical protein, hydrolase, family 19 glycosidase, REG protein of the cell WALL yield threshold; 1.50A {Vigna unguiculata} PDB: 1dxj_A Back     alignment and structure
>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Back     alignment and structure
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Back     alignment and structure
>1wkx_A Hevein isoform 2; allergen, lectin, agglutinin-toxin motif; 1.70A {Hevea brasiliensis} PDB: 1hev_A 1q9b_A* Back     alignment and structure
>2kus_A SM-AMP-1.1A; plant antimicrobial peptide, chitin-binding peptide, antimic protein; NMR {Stellaria media} Back     alignment and structure
>2lb7_A WAMP-1A, antimicrobial peptide 1A; antimicrobial protein; NMR {Triticum kiharae} Back     alignment and structure
>1mmc_A AC-AMP2, antimicrobial peptide 2; antifungal antimicrobial, chitin-binding; NMR {Amaranthus caudatus} SCOP: g.3.1.2 PDB: 1zuv_A 1zwu_A* 1znt_A* Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Back     alignment and structure
>1p9g_A EAFP 2; antifungal peptide, atomic resolution, antifungal protein; HET: PCA; 0.84A {Eucommia ulmoides} SCOP: g.3.1.1 PDB: 1p9z_A* Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 190
d2baaa_ 243 d.2.1.1 (A:) Plant class II chitinase {Barley (Hor 5e-33
d1dxja_ 242 d.2.1.1 (A:) Plant class II chitinase {Jack bean ( 2e-32
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  116 bits (291), Expect = 5e-33
 Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 58  TISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVA 117
           ++S      QF+ +   RN     A GF+ Y +F+ AAA +   GFGT+      ++EVA
Sbjct: 1   SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVA 58

Query: 118 AFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGA 177
           AFL     +T+ G+  A  G  AWG C+ +E   +  YC    +  +PC PG  Y+GRG 
Sbjct: 59  AFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGP 116

Query: 178 LPLYW 182
           + L  
Sbjct: 117 IQLSH 121
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 242 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query190
d2baaa_ 243 Plant class II chitinase {Barley (Hordeum vulgare) 100.0
d1dxja_ 242 Plant class II chitinase {Jack bean (Canavalia ens 100.0
d1q9ba_43 Hevein {Hevea brasiliensis [TaxId: 3981]} 96.18
d1uhaa142 Lectin-D {American pokeweed (Phytolacca americana) 95.7
d1en2a145 Isolectin VI {Stinging nettle (Urtica dioica), UDA 95.55
d9wgaa343 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 95.54
d9wgaa152 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 95.34
d1ulka241 Lectin-C {American pokeweed (Phytolacca americana) 95.19
d9wgaa234 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 94.97
d1uhaa240 Lectin-D {American pokeweed (Phytolacca americana) 94.47
d9wgaa442 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 94.4
d1mmca_30 Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranth 89.49
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=7.5e-52  Score=354.21  Aligned_cols=128  Identities=34%  Similarity=0.726  Sum_probs=123.8

Q ss_pred             CcccccCHHHHHHHHhcCCCCCCcCCCceeHHHHHHHHhhhCCCCcccCcCcchhhhHHHHhhhhhcccCCCCCCcCCCC
Q 029634           58 TISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGG  137 (190)
Q Consensus        58 ~v~~iit~~~F~~lfp~rn~~~c~a~gFYTY~~Fi~Aa~~fp~~~Fg~tG~~~~~krElAAFlAhvshET~gg~~~a~~g  137 (190)
                      +|++|||+++||+||||||++.||++|||||++||+|+++||  +|++||+++++||||||||||++|||+|+|..++++
T Consensus         1 ~v~~iit~~~F~~~fp~r~~~~c~~~~fYty~~fi~Aa~~fp--~F~~tg~~~~~krElAaFlAq~~hET~g~~~~~e~~   78 (243)
T d2baaa_           1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDG   78 (243)
T ss_dssp             CGGGTSCHHHHHHHTTTTTSTTSTTTTTCCHHHHHHHHTTST--TTTCSSCHHHHHHHHHHHHHHHHHHTCCCCTTCTTC
T ss_pred             CHHHhcCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhch--hhcCCCchhhhHHHHHHhhcCcccccCCCcccCCCC
Confidence            589999999999999999999999999999999999999999  999999999999999999999999999999999999


Q ss_pred             CcccceeeeeecCCCCCCcCCCCCCCCCCCCCCccccCCCCCCcCcCCCcCC
Q 029634          138 PLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWCVYRSPS  189 (190)
Q Consensus       138 p~~wGlcy~~E~~~~~~YC~~~~~~~yPCapGk~YyGRGpIQLSwNyNYg~a  189 (190)
                      ||+||||+++|+++...||+++.  +|||.+|++|||||||||||||||+++
T Consensus        79 ~~~~g~~~~~e~~~~~~yc~~~~--~~pc~~G~~Y~GRG~iQLT~~~NY~~~  128 (243)
T d2baaa_          79 AFAWGYCFKQERGASSDYCTPSA--QWPCAPGKRYYGRGPIQLSHNYNYGPA  128 (243)
T ss_dssp             GGGCTTCCSBCCSCCCCCCCCCS--SSCCCTTCCCCCBTTTTBCSHHHHHHH
T ss_pred             chhhcccchhccCCccccccCCC--CCCCCCCCcccCCCcccccchhhHHHH
Confidence            99999999999999999999763  699999999999999999999999864
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d1q9ba_ g.3.1.1 (A:) Hevein {Hevea brasiliensis [TaxId: 3981]} Back     information, alignment and structure
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d9wgaa3 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d9wgaa1 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d1ulka2 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d9wgaa2 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d1uhaa2 g.3.1.1 (A:43-82) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d9wgaa4 g.3.1.1 (A:130-171) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure