Citrus Sinensis ID: 029649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MEGLGSDGAASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKKSSENSSRIPRD
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meglgsdgaaSVMKWKSDFSRKFQYyldkstpntmERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIgflspsvdpelealntaslptkgsdefkpfvrrlpeFKFWYALTKAFVVAFFLTFFsvldvpvfWPILLCYWIFLFVLTMKRQILHMIKYkyvpfnigkprygkkssenssriprd
Flexible Loop (DISEMBL)
meglgsdgaasvmKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVDPELEALNtaslptkgsdefkPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKyvpfnigkprygkkssenssriprd
Low Complexity Region (SEG)
MEGLGSDGAASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYglgiyilnlligflSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKKSSENSSRIPRD
Disordered region (IsUnstruct)
*************KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVD*****************EFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGK*****************
Disordered Region (DISOPRED)
**************WKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVDP*********************VRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFN********************
Disordered Region (DISEMBL)
**********SVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPR***************
Disordered Region (DISPRO)
*********ASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVDP*******ASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIG******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGLGSDGAASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKKSSENSSRIPRD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
O48671	195	Protein RER1B OS=Arabidop	yes	no	0.994	0.969	0.658	3e-70
O48670	191	Protein RER1A OS=Arabidop	no	no	0.968	0.963	0.654	6e-68
Q9ZPV7	221	Protein RER1D OS=Arabidop	no	no	0.873	0.751	0.668	1e-62
Q9ZWI7	212	Protein RER1C OS=Arabidop	no	no	0.931	0.834	0.559	1e-57
Q498C8	196	Protein RER1 OS=Rattus no	yes	no	0.942	0.913	0.549	3e-50
Q9CQU3	196	Protein RER1 OS=Mus muscu	yes	no	0.942	0.913	0.549	3e-50
Q5R5U4	196	Protein RER1 OS=Pongo abe	yes	no	0.963	0.933	0.532	5e-50
O15258	196	Protein RER1 OS=Homo sapi	yes	no	0.963	0.933	0.532	5e-50
A5PJ65	196	Protein RER1 OS=Bos tauru	yes	no	0.963	0.933	0.532	6e-50
Q5ZHM5	196	Protein RER1 OS=Gallus ga	yes	no	0.942	0.913	0.532	4e-49

>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2

 Score =  264 bits (674), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 153/193 (79%), Gaps = 4/193 (2%)

Query: 1   MEGLGSDG---AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQG 57
           MEG G D    A  V K   +  R +QYYLDK+TP++  RW+GTL    IY LRV+ + G
Sbjct: 1   MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60

Query: 58  FYIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYAL 117
           FYI++YGLGIY+LNLLIGFLSP VDPELE  + A+LPT+GSDEFKPF+RRLPEFKFWY++
Sbjct: 61  FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query: 118 TKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY- 176
           TKAF +AF +TFFSV DVPVFWPILLCYW+ LFVLTM+RQI HMIK+KY+PF+IGK +Y 
Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180

Query: 177 GKKSSENSSRIPR 189
           G+KSS NS    R
Sbjct: 181 GRKSSANSGGGSR 193

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1

 Score =  256 bits (654), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/188 (65%), Positives = 148/188 (78%), Gaps = 4/188 (2%)

Query: 1   MEGLGSDG---AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQG 57
           M+  G D    A  V +   +  R +Q+YLDK+TP+   RW+GTL VA IY LRV+Y+QG
Sbjct: 1   MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60

Query: 58  FYIVTYGLGIYILNLLIGFLSPSVDPELEALNTA-SLPTKGSDEFKPFVRRLPEFKFWYA 116
           FYI+ YGLGIY+LNLLIGFLSP VDPE   ++   SLPT+GSDEFKPF+RRLPEFKFWY+
Sbjct: 61  FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120

Query: 117 LTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY 176
           +TKAF +AF +TFFSV DVPVFWPILLCYWI LFVLTM+RQI HMIKYKY+PF+ GK +Y
Sbjct: 121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKY 180

Query: 177 GKKSSENS 184
           G +SS  S
Sbjct: 181 GGRSSSGS 188

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/166 (66%), Positives = 134/166 (80%)

Query: 9   AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIY 68
           A+ + KW+ +FS+ FQ YLD+S PN + RWL TL  A IY+ RV+ V G+++++YGL  Y
Sbjct: 16  ASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATY 75

Query: 69  ILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLT 128
           ILNLLIGFLSP VDPELEAL+  SLP   SDE+KPFVRRLPEFKFWYA TKAFVVAF +T
Sbjct: 76  ILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVVAFVMT 135

Query: 129 FFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKP 174
           FFS LDVPVFWPILLCYW+ L+ LTMKR I+HM KY+Y PF++ KP
Sbjct: 136 FFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRKP 181

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1

 Score =  222 bits (565), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 99/177 (55%), Positives = 134/177 (75%)

Query: 9   AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIY 68
           A +V +    FS++ Q+ LDK+ P+ + RW+  L V  IY++RV++V+GFYI+TY +GIY
Sbjct: 34  ADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIY 93

Query: 69  ILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLT 128
           +LNL+I FLSP  DPE    +  SLPT+ SDE++PFVRRLPEFKFW ++ +AF++ F +T
Sbjct: 94  LLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMT 153

Query: 129 FFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKKSSENSS 185
           FF V DVPVFWPILL YW+ LF LTM++QI HMIKY+YVPF+ GK +YGKK +   S
Sbjct: 154 FFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQYGKKPAPTES 210

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1

 Score =  197 bits (501), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/182 (54%), Positives = 130/182 (71%), Gaps = 3/182 (1%)

Query: 3   GLGSDGAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIV 61
           G    G  SV+ ++ S   + +Q +LDKSTP T  RW+ TL ++ +Y++RV+ +QG+YIV
Sbjct: 8   GDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIV 67

Query: 62  TYGLGIYILNLLIGFLSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTK 119
           TY LGIY LNL I FLSP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKFW+A TK
Sbjct: 68  TYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATK 127

Query: 120 AFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
             +VA   TFF   +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF  GK RY  K
Sbjct: 128 GILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187

Query: 180 SS 181
             
Sbjct: 188 ED 189

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1

 Score =  197 bits (501), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/182 (54%), Positives = 130/182 (71%), Gaps = 3/182 (1%)

Query: 3   GLGSDGAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIV 61
           G    G  SV+ ++ S   + +Q +LDKSTP T  RW+ TL ++ +Y++RV+ +QG+YIV
Sbjct: 8   GDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIV 67

Query: 62  TYGLGIYILNLLIGFLSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTK 119
           TY LGIY LNL I FLSP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKFW+A TK
Sbjct: 68  TYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATK 127

Query: 120 AFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
             +VA   TFF   +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF  GK RY  K
Sbjct: 128 GILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187

Query: 180 SS 181
             
Sbjct: 188 ED 189

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Mus musculus (taxid: 10090)

>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1

 Score =  197 bits (500), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 99/186 (53%), Positives = 131/186 (70%), Gaps = 3/186 (1%)

Query: 3   GLGSDGAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIV 61
           G    G  SV+ ++ +   + +Q +LDKSTP T  RW+ TL ++ +Y++RV+ +QG+YIV
Sbjct: 8   GESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIV 67

Query: 62  TYGLGIYILNLLIGFLSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTK 119
           TY LGIY LNL I FLSP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKFW+A TK
Sbjct: 68  TYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATK 127

Query: 120 AFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
             +VA   TFF   +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF  GK RY  K
Sbjct: 128 GILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGK 187

Query: 180 SSENSS 185
                +
Sbjct: 188 EDAGKA 193

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Pongo abelii (taxid: 9601)

>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1

 Score =  197 bits (500), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 99/186 (53%), Positives = 131/186 (70%), Gaps = 3/186 (1%)

Query: 3   GLGSDGAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIV 61
           G    G  SV+ ++ +   + +Q +LDKSTP T  RW+ TL ++ +Y++RV+ +QG+YIV
Sbjct: 8   GESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIV 67

Query: 62  TYGLGIYILNLLIGFLSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTK 119
           TY LGIY LNL I FLSP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKFW+A TK
Sbjct: 68  TYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATK 127

Query: 120 AFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
             +VA   TFF   +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF  GK RY  K
Sbjct: 128 GILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGK 187

Query: 180 SSENSS 185
                +
Sbjct: 188 EDAGKA 193

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Homo sapiens (taxid: 9606)

>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2

 Score =  196 bits (499), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/186 (53%), Positives = 131/186 (70%), Gaps = 3/186 (1%)

Query: 3   GLGSDGAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIV 61
           G    G  SV+ ++ +   + +Q +LDKSTP+T  RW+ TL ++ IY++RV+ +QG+YIV
Sbjct: 8   GDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIV 67

Query: 62  TYGLGIYILNLLIGFLSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTK 119
           TY LGIY LNL I FLSP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKFW+A TK
Sbjct: 68  TYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATK 127

Query: 120 AFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
             +VA   TFF   +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF  GK  Y  K
Sbjct: 128 GILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTYKGK 187

Query: 180 SSENSS 185
                +
Sbjct: 188 EDAGKA 193

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Bos taurus (taxid: 9913)

>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1

 Score =  194 bits (492), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 97/182 (53%), Positives = 130/182 (71%), Gaps = 3/182 (1%)

Query: 3   GLGSDGAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIV 61
           G    G  SV+ ++ +   + +Q +LDKSTP T  RW+ TL ++ IY++RV+ +QG+YIV
Sbjct: 8   GESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIV 67

Query: 62  TYGLGIYILNLLIGFLSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTK 119
           TY LGIY LNL I FLSP VDP L  ++ +  SLPT+ ++EF+PF+RRLPEFKFW++ TK
Sbjct: 68  TYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATK 127

Query: 120 AFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
             +VA   TFF   +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF  GK +Y  K
Sbjct: 128 GILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRKYKGK 187

Query: 180 SS 181
             
Sbjct: 188 ED 189

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
224062115	194	predicted protein [Populus trichocarpa]	0.973	0.953	0.792	4e-83
225458241	194	PREDICTED: protein RER1B [Vitis vinifera	1.0	0.979	0.785	5e-83
297735130	244	unnamed protein product [Vitis vinifera]	1.0	0.778	0.778	9e-82
225430712	194	PREDICTED: protein RER1B-like [Vitis vin	1.0	0.979	0.778	2e-81
224085686	194	predicted protein [Populus trichocarpa]	1.0	0.979	0.762	2e-80
255561096	192	rer1 protein, putative [Ricinus communis	0.994	0.984	0.773	2e-80
449469973	194	PREDICTED: protein RER1B-like [Cucumis s	1.0	0.979	0.768	8e-80
116791147	192	unknown [Picea sitchensis]	1.0	0.989	0.718	1e-78
255538690	194	rer1 protein, putative [Ricinus communis	0.926	0.907	0.776	5e-77
225428428	194	PREDICTED: protein RER1B [Vitis vinifera	0.973	0.953	0.739	6e-76

>gi|224062115|ref|XP_002300762.1| predicted protein [Populus trichocarpa] gi|222842488|gb|EEE80035.1| predicted protein [Populus trichocarpa]

 Score =  312 bits (799), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 149/188 (79%), Positives = 166/188 (88%), Gaps = 3/188 (1%)

Query: 1   MEGLGSDGA---ASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQG 57
           MEG G D A     V KW++DFSR FQYYLD+STP+ M+RWLGTLAVAAIYVLRVFY QG
Sbjct: 1   MEGNGGDAANVVGPVAKWRNDFSRAFQYYLDRSTPHPMQRWLGTLAVAAIYVLRVFYAQG 60

Query: 58  FYIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYAL 117
           FYIV+YGLGIYILNLLIGFLSP VDPELE L+ ASLPTKGSDEFKPF+RRLPEFKFWYA+
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPKVDPELEVLDGASLPTKGSDEFKPFIRRLPEFKFWYAI 120

Query: 118 TKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYG 177
           TKAF VAF +TFFS+ DVPVFWPILLCYWI LFVLTMKRQ++HM+KYKYVPF++GK RYG
Sbjct: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQLMHMMKYKYVPFSLGKQRYG 180

Query: 178 KKSSENSS 185
           KK S+ SS
Sbjct: 181 KKKSDASS 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458241|ref|XP_002282050.1| PREDICTED: protein RER1B [Vitis vinifera] gi|302142515|emb|CBI19718.3| unnamed protein product [Vitis vinifera]

 Score =  312 bits (799), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 150/191 (78%), Positives = 169/191 (88%), Gaps = 1/191 (0%)

Query: 1   MEGLGSDGAASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYI 60
           +EG  +   A + KWK+DFSR FQ+YLDKSTP+ + RWLGTLAVAAIYVLRV+YVQGFYI
Sbjct: 4   VEGDAASTVAPLAKWKNDFSRAFQHYLDKSTPHPVHRWLGTLAVAAIYVLRVYYVQGFYI 63

Query: 61  VTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKA 120
           V+YGLGIYILNLLIGFLSP VDPELE L+ ASLPTKGSDEFKPF+RRLPEFKFWY++TKA
Sbjct: 64  VSYGLGIYILNLLIGFLSPKVDPELEVLDGASLPTKGSDEFKPFIRRLPEFKFWYSITKA 123

Query: 121 FVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY-GKK 179
           F VAF +TFFSV DVPVFWPILLCYWI LFVLTMKRQI+HMIKYKYVPF+IGK RY GKK
Sbjct: 124 FCVAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQIMHMIKYKYVPFSIGKQRYTGKK 183

Query: 180 SSENSSRIPRD 190
           S+ +S  +PRD
Sbjct: 184 SAASSRGLPRD 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735130|emb|CBI17492.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (788), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 151/194 (77%), Positives = 168/194 (86%), Gaps = 4/194 (2%)

Query: 1   MEGLGSD---GAASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQG 57
           ME  G D    AA + KWKSDFSR FQYYLD+S P+  ERWLGTL  A+IY LRV+YVQG
Sbjct: 51  MEENGGDFALAAAPLAKWKSDFSRAFQYYLDRSAPHIAERWLGTLVAASIYFLRVYYVQG 110

Query: 58  FYIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYAL 117
           FY+++YGLGIY+LNLLIGFLSP VDPELEAL+ ASLPTK SDEFKPFVRRLPEFKFWY++
Sbjct: 111 FYVISYGLGIYVLNLLIGFLSPKVDPELEALDGASLPTKDSDEFKPFVRRLPEFKFWYSI 170

Query: 118 TKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY- 176
           TKAFVVAF LTFFS+LDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPF++GK RY 
Sbjct: 171 TKAFVVAFGLTFFSMLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFDMGKMRYT 230

Query: 177 GKKSSENSSRIPRD 190
           GKK S + SR+ RD
Sbjct: 231 GKKPSASGSRLARD 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430712|ref|XP_002265209.1| PREDICTED: protein RER1B-like [Vitis vinifera]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 151/194 (77%), Positives = 168/194 (86%), Gaps = 4/194 (2%)

Query: 1   MEGLGSD---GAASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQG 57
           ME  G D    AA + KWKSDFSR FQYYLD+S P+  ERWLGTL  A+IY LRV+YVQG
Sbjct: 1   MEENGGDFALAAAPLAKWKSDFSRAFQYYLDRSAPHIAERWLGTLVAASIYFLRVYYVQG 60

Query: 58  FYIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYAL 117
           FY+++YGLGIY+LNLLIGFLSP VDPELEAL+ ASLPTK SDEFKPFVRRLPEFKFWY++
Sbjct: 61  FYVISYGLGIYVLNLLIGFLSPKVDPELEALDGASLPTKDSDEFKPFVRRLPEFKFWYSI 120

Query: 118 TKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY- 176
           TKAFVVAF LTFFS+LDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPF++GK RY 
Sbjct: 121 TKAFVVAFGLTFFSMLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFDMGKMRYT 180

Query: 177 GKKSSENSSRIPRD 190
           GKK S + SR+ RD
Sbjct: 181 GKKPSASGSRLARD 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085686|ref|XP_002307664.1| predicted protein [Populus trichocarpa] gi|222857113|gb|EEE94660.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 148/194 (76%), Positives = 167/194 (86%), Gaps = 4/194 (2%)

Query: 1   MEGLGSDGA---ASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQG 57
           MEG G D A   A + KW++DFSR FQ+YLD+STP+  ERWLGTLAVAA+YVLR ++VQG
Sbjct: 1   MEGNGGDAANVVAPLAKWRNDFSRAFQFYLDRSTPHPTERWLGTLAVAAVYVLRAYFVQG 60

Query: 58  FYIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYAL 117
           FYI++YGLGIYILNLLIGFLSP VDPELE  + ASLPTKGSDEFKPF+RRLPEFKFWYA+
Sbjct: 61  FYIISYGLGIYILNLLIGFLSPKVDPELEVSDDASLPTKGSDEFKPFIRRLPEFKFWYAI 120

Query: 118 TKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYG 177
           TKAF VAF +TFFSV DVPVFWPILLCYWI LFVLTMKRQI+HMIKYKYVPF+ GK RYG
Sbjct: 121 TKAFCVAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQIMHMIKYKYVPFSRGKQRYG 180

Query: 178 -KKSSENSSRIPRD 190
            KKS  +SS + RD
Sbjct: 181 RKKSGASSSGLMRD 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561096|ref|XP_002521560.1| rer1 protein, putative [Ricinus communis] gi|223539238|gb|EEF40831.1| rer1 protein, putative [Ricinus communis]

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 147/190 (77%), Positives = 165/190 (86%), Gaps = 1/190 (0%)

Query: 2   EGLGSDGA-ASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYI 60
           EG+G++   A + KW+S+ SR FQYYLD+STP+TM RWLGTLAV  IYVLRV+YV+GFY+
Sbjct: 3   EGVGNESQEAPLAKWRSEMSRAFQYYLDRSTPHTMRRWLGTLAVGLIYVLRVYYVEGFYV 62

Query: 61  VTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKA 120
           V+YGLGIYILNLLIGFLSP  DPELEAL+ ASLPTKGSDE+KPF+RRLPEFKFWYA+TKA
Sbjct: 63  VSYGLGIYILNLLIGFLSPKDDPELEALDGASLPTKGSDEYKPFIRRLPEFKFWYAITKA 122

Query: 121 FVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKKS 180
           FVVAF LTFFSVLDVPVFWPILLCYWI LFVLTMKRQILHMIKYKYVPF+ GK RY  K+
Sbjct: 123 FVVAFILTFFSVLDVPVFWPILLCYWIVLFVLTMKRQILHMIKYKYVPFSSGKQRYTGKN 182

Query: 181 SENSSRIPRD 190
           S  SS    D
Sbjct: 183 SSASSSTAMD 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469973|ref|XP_004152693.1| PREDICTED: protein RER1B-like [Cucumis sativus] gi|449496096|ref|XP_004160038.1| PREDICTED: protein RER1B-like [Cucumis sativus]

 Score =  301 bits (771), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 149/194 (76%), Positives = 173/194 (89%), Gaps = 4/194 (2%)

Query: 1   MEGLGSDGAASVM---KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQG 57
           MEG+G D A++V    KW++DFSR FQYYLD+STP+ ++RWLGTL VAAIYVLRVFYVQG
Sbjct: 1   MEGVGGDTASAVAPLAKWRNDFSRAFQYYLDRSTPHPVQRWLGTLLVAAIYVLRVFYVQG 60

Query: 58  FYIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYAL 117
           FY+V+YGLGIYILNLLIGFLSP VDPEL+ L+ ASLPTKGSDEFKPF+RRLPEFKFWYA+
Sbjct: 61  FYVVSYGLGIYILNLLIGFLSPKVDPELDVLDGASLPTKGSDEFKPFIRRLPEFKFWYAI 120

Query: 118 TKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY- 176
           TKAF +AF +TFFS+ DVPVFWPILLCYWI LFVLTMKRQI+HMIKYKY+PF+IGK RY 
Sbjct: 121 TKAFCIAFLMTFFSLFDVPVFWPILLCYWIVLFVLTMKRQIMHMIKYKYIPFSIGKQRYT 180

Query: 177 GKKSSENSSRIPRD 190
           GK+SS +SS + RD
Sbjct: 181 GKRSSASSSGVSRD 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116791147|gb|ABK25873.1| unknown [Picea sitchensis]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/192 (71%), Positives = 165/192 (85%), Gaps = 2/192 (1%)

Query: 1   MEGLGSDGAASV--MKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGF 58
           MEG+  DG + V   +W++DFSR+FQYYLDKSTP+ + RWLG+LA A IY+LRV+YVQGF
Sbjct: 1   MEGVTVDGGSPVGLARWRNDFSRRFQYYLDKSTPHPVGRWLGSLAAATIYILRVYYVQGF 60

Query: 59  YIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALT 118
           YIV+YGLGIY+LNLLIGFLSP VDPE+E ++ ASLPTKGSDEFKPF+RRLPEFKFWY++T
Sbjct: 61  YIVSYGLGIYVLNLLIGFLSPQVDPEMEGMDGASLPTKGSDEFKPFIRRLPEFKFWYSIT 120

Query: 119 KAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGK 178
           KAF ++F +TFFSV DVPVFWPILLCYW+ LFVLTMKRQILHMIKYKYVPF++GK RY  
Sbjct: 121 KAFCISFVMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQILHMIKYKYVPFSLGKQRYSG 180

Query: 179 KSSENSSRIPRD 190
           K S + +   RD
Sbjct: 181 KRSTDKAGSSRD 192

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538690|ref|XP_002510410.1| rer1 protein, putative [Ricinus communis] gi|223551111|gb|EEF52597.1| rer1 protein, putative [Ricinus communis]

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 139/179 (77%), Positives = 156/179 (87%), Gaps = 3/179 (1%)

Query: 1   MEGLGSDG---AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQG 57
           MEG G D     A   KW+++FSR FQYYLD+STP  MERWLGTLA +AIY+LRV+Y QG
Sbjct: 1   MEGAGGDTDSIVAPFAKWRNEFSRTFQYYLDRSTPYPMERWLGTLAASAIYMLRVYYAQG 60

Query: 58  FYIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYAL 117
           FYIV+YGLGIYILNLLIGFLSP VDPELE L+ ASLPTKGSDEFKPF+RRLPEFKFWY++
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPKVDPELEVLDGASLPTKGSDEFKPFIRRLPEFKFWYSI 120

Query: 118 TKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY 176
           TKAF VAF +TFFSV DVPVFWPILLCYW+ LFVLTMKRQI+HMIKYKYVPF++GK RY
Sbjct: 121 TKAFCVAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIMHMIKYKYVPFSVGKQRY 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428428|ref|XP_002283905.1| PREDICTED: protein RER1B [Vitis vinifera] gi|297744409|emb|CBI37671.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (738), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 139/188 (73%), Positives = 160/188 (85%), Gaps = 3/188 (1%)

Query: 1   MEGLGSDGAASV---MKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQG 57
           MEG G  G ++V   ++WK+D SR FQYYLDK+TP+ + RW+GTL VAAIY LRV+YVQG
Sbjct: 1   MEGTGGGGPSAVSPVIQWKTDASRLFQYYLDKTTPHPVYRWVGTLVVAAIYALRVYYVQG 60

Query: 58  FYIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYAL 117
           FY+V+YGLGIY+LNLLIGFLSP VDPELE  N A LPTKGSDEFKPF+RRLPEFKFWY++
Sbjct: 61  FYVVSYGLGIYLLNLLIGFLSPLVDPELETSNEALLPTKGSDEFKPFIRRLPEFKFWYSI 120

Query: 118 TKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYG 177
           TKAF VAF LTFFS  DVPVFWPILLCYWI LF+LTMKRQI+HMIKYKYVPF++GK +YG
Sbjct: 121 TKAFCVAFVLTFFSAFDVPVFWPILLCYWIVLFILTMKRQIVHMIKYKYVPFSMGKQKYG 180

Query: 178 KKSSENSS 185
            K S  SS
Sbjct: 181 GKKSFASS 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2049354	195	RER1B "AT2G21600" [Arabidopsis	0.968	0.943	0.601	9.3e-59
TAIR|locus:2136373	191	ATRER1A "AT4G39220" [Arabidops	0.963	0.958	0.591	9.6e-57
TAIR|locus:2062185	221	AT2G18240 "AT2G18240" [Arabido	0.873	0.751	0.596	1.9e-53
TAIR|locus:2058583	212	ATRER1C1 "AT2G23310" [Arabidop	0.947	0.849	0.505	4.1e-49
ASPGD|ASPL0000006680	189	AN5915 [Emericella nidulans (t	0.852	0.857	0.517	3.1e-44
MGI|MGI:1915080	196	Rer1 "RER1 retention in endopl	0.905	0.877	0.511	2.2e-43
RGD|1306324	196	Rer1 "RER1 retention in endopl	0.905	0.877	0.511	2.2e-43
UNIPROTKB|O15258	196	RER1 "Protein RER1" [Homo sapi	0.915	0.887	0.5	4.5e-43
UNIPROTKB|A5PJ65	196	RER1 "Protein RER1" [Bos tauru	0.915	0.887	0.5	7.3e-43
UNIPROTKB|G4N8F0	190	MGG_06273 "Uncharacterized pro	0.905	0.905	0.474	1.5e-42

TAIR|locus:2049354 RER1B "AT2G21600" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 113/188 (60%), Positives = 138/188 (73%)

Query:     1 MEGLGSDG---AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQG 57
             MEG G D    A  V K   +  R +QYYLDK+TP++  RW+GTL    IY LRV+ + G
Sbjct:     1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60

Query:    58 FYIVTYXXXXXXXXXXXXXXSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYAL 117
             FYI++Y              SP VDPELE  + A+LPT+GSDEFKPF+RRLPEFKFWY++
Sbjct:    61 FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query:   118 TKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY- 176
             TKAF +AF +TFFSV DVPVFWPILLCYW+ LFVLTM+RQI HMIK+KY+PF+IGK +Y 
Sbjct:   121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180

Query:   177 GKKSSENS 184
             G+KSS NS
Sbjct:   181 GRKSSANS 188

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2136373 ATRER1A "AT4G39220" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 110/186 (59%), Positives = 133/186 (71%)

Query:     2 EGLGSDG--AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFY 59
             E  G  G  A  V +   +  R +Q+YLDK+TP+   RW+GTL VA IY LRV+Y+QGFY
Sbjct:     3 ESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFY 62

Query:    60 IVTYXXXXXXXXXXXXXXSPSVDPELEALNTA-SLPTKGSDEFKPFVRRLPEFKFWYALT 118
             I+ Y              SP VDPE   ++   SLPT+GSDEFKPF+RRLPEFKFWY++T
Sbjct:    63 IIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMT 122

Query:   119 KAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGK 178
             KAF +AF +TFFSV DVPVFWPILLCYWI LFVLTM+RQI HMIKYKY+PF+ GK +YG 
Sbjct:   123 KAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKYGG 182

Query:   179 KSSENS 184
             +SS  S
Sbjct:   183 RSSSGS 188

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2062185 AT2G18240 "AT2G18240" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 99/166 (59%), Positives = 122/166 (73%)

Query:     9 AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXX 68
             A+ + KW+ +FS+ FQ YLD+S PN + RWL TL  A IY+ RV+ V G+++++Y     
Sbjct:    16 ASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATY 75

Query:    69 XXXXXXXXXSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLT 128
                      SP VDPELEAL+  SLP   SDE+KPFVRRLPEFKFWYA TKAFVVAF +T
Sbjct:    76 ILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVVAFVMT 135

Query:   129 FFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKP 174
             FFS LDVPVFWPILLCYW+ L+ LTMKR I+HM KY+Y PF++ KP
Sbjct:   136 FFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRKP 181

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA;ISS

TAIR|locus:2058583 ATRER1C1 "AT2G23310" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 91/180 (50%), Positives = 123/180 (68%)

Query:     6 SDGAASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXX 65
             S  A +V +    FS++ Q+ LDK+ P+ + RW+  L V  IY++RV++V+GFYI+TY  
Sbjct:    31 SSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAI 90

Query:    66 XXXXXXXXXXXXSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAF 125
                         SP  DPE    +  SLPT+ SDE++PFVRRLPEFKFW ++ +AF++ F
Sbjct:    91 GIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGF 150

Query:   126 FLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKKSSENSS 185
              +TFF V DVPVFWPILL YW+ LF LTM++QI HMIKY+YVPF+ GK +YGKK +   S
Sbjct:   151 MMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQYGKKPAPTES 210

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=NAS

GO:0045185 "maintenance of protein location" evidence=IGI

ASPGD|ASPL0000006680 AN5915 [Emericella nidulans (taxid:162425)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 88/170 (51%), Positives = 110/170 (64%)

Query:    17 SDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXXXXXXXXXX 76
             S  +R++Q YLD STP T  RW+GT  +  I+ LR+   QG+YIV Y             
Sbjct:    19 SKLARQYQTYLDASTPFTAYRWIGTAVLLFIFFLRIILAQGWYIVAYTVGIYLLNLFLLF 78

Query:    77 XSPSVDPEL---EALNTA-----SLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLT 128
               P  DP L   E L        SLPTK  DEF+PF+RRLPEFKFW++ T+A  + F  T
Sbjct:    79 LQPKFDPSLTQDEGLEDGDAGAPSLPTKQDDEFRPFIRRLPEFKFWHSATRALAIGFLCT 138

Query:   129 FFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGK 178
             +FSV D+PVFWP+L+ YWI LFVLTM+RQI HMIKY+YVPF+ GK RYG+
Sbjct:   139 WFSVFDIPVFWPVLVVYWILLFVLTMRRQIQHMIKYRYVPFSFGKARYGR 188

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0030134 "ER to Golgi transport vesicle" evidence=IEA

GO:0030137 "COPI-coated vesicle" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006621 "protein retention in ER lumen" evidence=IEA

MGI|MGI:1915080 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 90/176 (51%), Positives = 121/176 (68%)

Query:     8 GAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXX 66
             G  SV+ ++ S   + +Q +LDKSTP T  RW+ TL ++ +Y++RV+ +QG+YIVTY   
Sbjct:    13 GKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALG 72

Query:    67 XXXXXXXXXXXSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVA 124
                        SP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKFW+A TK  +VA
Sbjct:    73 IYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVA 132

Query:   125 FFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY-GKK 179
                TFF   +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF  GK RY GK+
Sbjct:   133 MICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGKE 188

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=ISO

RGD|1306324 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 90/176 (51%), Positives = 121/176 (68%)

Query:     8 GAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXX 66
             G  SV+ ++ S   + +Q +LDKSTP T  RW+ TL ++ +Y++RV+ +QG+YIVTY   
Sbjct:    13 GKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALG 72

Query:    67 XXXXXXXXXXXSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVA 124
                        SP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKFW+A TK  +VA
Sbjct:    73 IYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVA 132

Query:   125 FFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY-GKK 179
                TFF   +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF  GK RY GK+
Sbjct:   133 MICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGKE 188

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA;ISO

GO:0030173 "integral to Golgi membrane" evidence=IEA;ISO

UNIPROTKB|O15258 RER1 "Protein RER1" [Homo sapiens (taxid:9606)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 89/178 (50%), Positives = 122/178 (68%)

Query:     8 GAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXX 66
             G  SV+ ++ +   + +Q +LDKSTP T  RW+ TL ++ +Y++RV+ +QG+YIVTY   
Sbjct:    13 GKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALG 72

Query:    67 XXXXXXXXXXXSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVA 124
                        SP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKFW+A TK  +VA
Sbjct:    73 IYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVA 132

Query:   125 FFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY-GKKSS 181
                TFF   +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF  GK RY GK+ +
Sbjct:   133 MVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGKEDA 190

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|A5PJ65 RER1 "Protein RER1" [Bos taurus (taxid:9913)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 89/178 (50%), Positives = 122/178 (68%)

Query:     8 GAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXX 66
             G  SV+ ++ +   + +Q +LDKSTP+T  RW+ TL ++ IY++RV+ +QG+YIVTY   
Sbjct:    13 GKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALG 72

Query:    67 XXXXXXXXXXXSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVA 124
                        SP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKFW+A TK  +VA
Sbjct:    73 IYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVA 132

Query:   125 FFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY-GKKSS 181
                TFF   +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF  GK  Y GK+ +
Sbjct:   133 MVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTYKGKEDA 190

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

UNIPROTKB|G4N8F0 MGG_06273 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 85/179 (47%), Positives = 111/179 (62%)

Query:    10 ASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXXX 69
             A+V    S  SR++Q  LD+STP  + RW+GT     ++  R+F  QG+YIV Y      
Sbjct:    12 AAVSAQTSRLSRQYQAVLDQSTPYVLYRWIGTGITLVLFFARIFVAQGWYIVAYALGIYL 71

Query:    70 XXXXXXXXSPSVDPELEALNT-------ASLPTKGSDEFKPFVRRLPEFKFWYALTKAFV 122
                      P  DP  EAL+          LPTK  +EF+PF+RRLPEFKFW+A T+A V
Sbjct:    72 LNLFLAFLQPKFDPSNEALDNDMEDGAVGGLPTKQDEEFRPFIRRLPEFKFWHAATRAIV 131

Query:   123 VAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKKSS 181
             + F  ++F V +VPVFWP+L+ YW  LF LTM++QI HMIKY+YVPF+ GK RY K SS
Sbjct:   132 IGFLCSWFEVFNVPVFWPVLVMYWFILFFLTMRKQIQHMIKYRYVPFSFGKARYAKNSS 190

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CQU3	RER1_MOUSE	No assigned EC number	0.5494	0.9421	0.9132	yes	no
P25560	RER1_YEAST	No assigned EC number	0.4720	0.8368	0.8457	yes	no
Q5ZHM5	RER1_CHICK	No assigned EC number	0.5329	0.9421	0.9132	yes	no
O15258	RER1_HUMAN	No assigned EC number	0.5322	0.9631	0.9336	yes	no
Q5R5U4	RER1_PONAB	No assigned EC number	0.5322	0.9631	0.9336	yes	no
Q54D10	RER1_DICDI	No assigned EC number	0.4585	0.9315	0.9414	yes	no
P52879	RER1_CAEEL	No assigned EC number	0.5207	0.8631	0.8586	yes	no
A5PJ65	RER1_BOVIN	No assigned EC number	0.5322	0.9631	0.9336	yes	no
O48671	RER1B_ARATH	No assigned EC number	0.6580	0.9947	0.9692	yes	no
Q498C8	RER1_RAT	No assigned EC number	0.5494	0.9421	0.9132	yes	no
Q10358	RER1_SCHPO	No assigned EC number	0.4534	0.8684	0.8967	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
pfam03248	175	pfam03248, Rer1, Rer1 family	3e-92
COG5249	180	COG5249, RER1, Golgi protein involved in Golgi-to-	9e-59

>gnl|CDD|202582 pfam03248, Rer1, Rer1 family

 Score =  266 bits (682), Expect = 3e-92
 Identities = 100/173 (57%), Positives = 127/173 (73%), Gaps = 5/173 (2%)

Query: 12  VMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILN 71
           V ++ +  SR +Q YLDK+TP+T  RW+  L +  +++LRV   QG+Y+V Y LGIY+LN
Sbjct: 3   VTRFTNKLSRTYQRYLDKTTPHTAYRWIFFLFLLFLFILRVILAQGWYVVCYALGIYLLN 62

Query: 72  LLIGFLSPSVDPELEAL-----NTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFF 126
           L + FL+P  DP LE          SLPT   DEF+PF+RRLPEFKFWY+ T+A V+A F
Sbjct: 63  LFLAFLTPKFDPSLEQEDEDVEEGPSLPTSNDDEFRPFIRRLPEFKFWYSATRATVIALF 122

Query: 127 LTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
            TFFS  D+PVFWPILL Y+I LF LTM+RQI HMIKYKYVPF+IGKP+YG+K
Sbjct: 123 CTFFSFFDIPVFWPILLMYFIILFFLTMRRQIKHMIKYKYVPFDIGKPKYGRK 175

RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex. Length = 175

>gnl|CDD|227574 COG5249, RER1, Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

 Score =  181 bits (461), Expect = 9e-59
 Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 2/170 (1%)

Query: 11  SVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYIL 70
           +++   +D    +Q+YLD+  P    RW  T  +  ++ +R++   G+Y++ Y LGIY+L
Sbjct: 10  NLITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLL 69

Query: 71  NLLIGFLSPSVDPELE-ALNTASLP-TKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLT 128
           N  + FL+P  D   E   +   +   +  +EF+PF+RRLPEFKFWY  T+A  +A   +
Sbjct: 70  NAFLAFLTPKFDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGS 129

Query: 129 FFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGK 178
           +F + DVPVFWPIL+ Y+IFL   T +RQI HM KY+Y PF+IGK +Y  
Sbjct: 130 YFGIFDVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNPFDIGKKKYKS 179

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
KOG1688	188	consensus Golgi proteins involved in ER retention	100.0
PF03248	176	Rer1: Rer1 family; InterPro: IPR004932 RER1 family	100.0
COG5249	180	RER1 Golgi protein involved in Golgi-to-ER retriev	100.0
PF09973	233	DUF2208: Predicted membrane protein (DUF2208); Int	86.1

>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-90  Score=572.37  Aligned_cols=172  Identities=61%  Similarity=1.150  Sum_probs=168.5

Q ss_pred             chhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcccEEEehhHHHHHHHHHHHhhcCCCCCchhh-h
Q 029649            9 AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVDPELE-A   87 (190)
Q Consensus         9 ~~~~~~~~~~~~~~yq~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~yiVtY~LgIylLnlfi~FLtP~~Dp~l~-~   87 (190)
                      ++|+.++.+++++.||+||||+|||+..||+++++++++|++||+..|||||||||||||+||+||+|||||+|||+| +
T Consensus        14 a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfiaFLtPk~Dp~~~~~   93 (188)
T KOG1688|consen   14 ASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIAFLTPKVDPELQDA   93 (188)
T ss_pred             chHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCchhhcc
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999999996 4


Q ss_pred             ccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCcc
Q 029649           88 LNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYV  167 (190)
Q Consensus        88 ~dg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~ltm~rqI~HMiKy~Yv  167 (190)
                      +||+.||+++|||||||||||||||||+++|||+++|+.||||++||+|||||||++||++||++||||||+|||||||+
T Consensus        94 ~dg~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~Y~i~lf~ltmrRqI~HMiKyrY~  173 (188)
T KOG1688|consen   94 DDGPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLMYFIVLFFLTMRRQIAHMIKYRYI  173 (188)
T ss_pred             cCCCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCC
Q 029649          168 PFNIGKPRYGKKS  180 (190)
Q Consensus       168 Pf~~gK~~y~~~~  180 (190)
                      ||++||++|++++
T Consensus       174 Pf~~gK~~~~~~~  186 (188)
T KOG1688|consen  174 PFDIGKKKYGSHS  186 (188)
T ss_pred             ccccCchhhhccc
Confidence            9999999998764

>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment

Probab=100.00  E-value=3.9e-88  Score=560.99  Aligned_cols=168  Identities=61%  Similarity=1.164  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcccEEEehhHHHHHHHHHHHhhcCCCCCchhhh----
Q 029649           12 VMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVDPELEA----   87 (190)
Q Consensus        12 ~~~~~~~~~~~yq~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~yiVtY~LgIylLnlfi~FLtP~~Dp~l~~----   87 (190)
                      ++++.++++++||++|||||||++.||+++++|+++|++||+..|||||||||||||+||+||+||||++||++++    
T Consensus         2 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~~   81 (176)
T PF03248_consen    2 VSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEED   81 (176)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCcccccccccc
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999973    


Q ss_pred             -ccCCCCCC--CCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029649           88 -LNTASLPT--KGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKY  164 (190)
Q Consensus        88 -~dg~~lp~--~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~ltm~rqI~HMiKy  164 (190)
                       |||+.||+  +++||||||+|||||||||++||||+++|++||||++||||||||||++|||+||++||||||+|||||
T Consensus        82 ~~~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~lf~~tm~~qI~hMiKy  161 (176)
T PF03248_consen   82 EEEGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVLFVLTMKRQIKHMIKY  161 (176)
T ss_pred             ccccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             46889999  889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCccccCCC
Q 029649          165 KYVPFNIGKPRYGKK  179 (190)
Q Consensus       165 ~YvPf~~gK~~y~~~  179 (190)
                      ||+|||+||++|++|
T Consensus       162 ~Y~Pf~~gK~~y~~~  176 (176)
T PF03248_consen  162 RYVPFDFGKKKYGRK  176 (176)
T ss_pred             CCCCccccchhccCC
Confidence            999999999999875

The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane

>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.6e-75  Score=477.51  Aligned_cols=168  Identities=42%  Similarity=0.864  Sum_probs=158.3

Q ss_pred             hHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcccEEEehhHHHHHHHHHHHhhcCCCCCchhhh-cc
Q 029649           11 SVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVDPELEA-LN   89 (190)
Q Consensus        11 ~~~~~~~~~~~~yq~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~yiVtY~LgIylLnlfi~FLtP~~Dp~l~~-~d   89 (190)
                      .+.+..+.+++.||+||||.+||+.+||+.+++|+.+|++||...+|||+|||+||||+||+|++|||||+||+.|+ ||
T Consensus        10 n~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaFLTPKfdms~eq~e~   89 (180)
T COG5249          10 NLITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMSFEQIED   89 (180)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhCCCCcccHhhhcc
Confidence            35566888999999999999999999999999999999999999999999999999999999999999999999985 44


Q ss_pred             CCCCC-CCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCccc
Q 029649           90 TASLP-TKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVP  168 (190)
Q Consensus        90 g~~lp-~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~ltm~rqI~HMiKy~YvP  168 (190)
                      +..+| ++.|+|||||||||||||||+++||||++|++.|+|++||||||||||++|||+|+.+|||||||||+||||+|
T Consensus        90 d~eieeg~kd~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l~f~t~rRqIqHM~KYrY~P  169 (180)
T COG5249          90 DDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNP  169 (180)
T ss_pred             ccccccccccchhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            44444 46899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCC
Q 029649          169 FNIGKPRYGK  178 (190)
Q Consensus       169 f~~gK~~y~~  178 (190)
                      |++||++|++
T Consensus       170 fdigKkky~s  179 (180)
T COG5249         170 FDIGKKKYKS  179 (180)
T ss_pred             hhhhhhhhcc
Confidence            9999999975

>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues

Probab=86.10  E-value=1.6  Score=38.46  Aligned_cols=43  Identities=19%  Similarity=0.423  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 029649          116 ALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMI  162 (190)
Q Consensus       116 ~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~ltm~rqI~HMi  162 (190)
                      +.+-.+++|++++|++.    -||++.+.||++.++++|.-.++++-
T Consensus         7 sq~~il~fa~Vla~~p~----y~~~~filYfiv~~~i~~~~~~Rs~r   49 (233)
T PF09973_consen    7 SQVSILLFAAVLAFFPQ----YYFEVFILYFIVFFGIMIVMGIRSYR   49 (233)
T ss_pred             HHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            45566788889887753    36899999999999999998888876

However, these proteins are predicted to contain three or more transmembrane segments.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00