Citrus Sinensis ID: 029675
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 189 | 2.2.26 [Sep-21-2011] | |||||||
| Q06396 | 181 | ADP-ribosylation factor 1 | yes | no | 0.952 | 0.994 | 0.994 | 1e-103 | |
| O48920 | 181 | ADP-ribosylation factor O | N/A | no | 0.952 | 0.994 | 0.988 | 1e-103 | |
| P51823 | 181 | ADP-ribosylation factor 2 | yes | no | 0.952 | 0.994 | 0.988 | 1e-103 | |
| P51822 | 181 | ADP-ribosylation factor 1 | N/A | no | 0.952 | 0.994 | 0.988 | 1e-103 | |
| P36397 | 181 | ADP-ribosylation factor 1 | yes | no | 0.952 | 0.994 | 0.988 | 1e-102 | |
| P0DH91 | 181 | ADP-ribosylation factor 2 | yes | no | 0.952 | 0.994 | 0.983 | 1e-102 | |
| Q9LQC8 | 181 | ADP-ribosylation factor 2 | yes | no | 0.952 | 0.994 | 0.983 | 1e-102 | |
| P49076 | 181 | ADP-ribosylation factor O | N/A | no | 0.952 | 0.994 | 0.977 | 1e-102 | |
| O48649 | 181 | ADP-ribosylation factor 1 | N/A | no | 0.957 | 1.0 | 0.961 | 1e-100 | |
| O23778 | 181 | ADP-ribosylation factor 1 | N/A | no | 0.952 | 0.994 | 0.966 | 1e-100 |
| >sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 374 bits (960), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/180 (99%), Positives = 180/180 (100%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3 | Back alignment and function description |
|---|
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/180 (98%), Positives = 180/180 (100%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASK 180
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Vigna unguiculata (taxid: 3917) |
| >sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2 | Back alignment and function description |
|---|
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/180 (98%), Positives = 180/180 (100%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/180 (98%), Positives = 179/180 (99%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Daucus carota (taxid: 4039) |
| >sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/180 (98%), Positives = 179/180 (99%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; required for the sequence-specific vacuolar sorting route to the lytic vacuole, for the ER-to-Golgi transport and for the Golgi-derived transport to the plasma membrane. Involved in the recruitment of COPI and GDAP1 to membranes. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DH91|ARF2B_ARATH ADP-ribosylation factor 2-B OS=Arabidopsis thaliana GN=ARF2-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/180 (98%), Positives = 178/180 (98%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQC8|ARF2A_ARATH ADP-ribosylation factor 2-A OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=2 | Back alignment and function description |
|---|
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/180 (98%), Positives = 178/180 (98%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|P49076|ARF_MAIZE ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/180 (97%), Positives = 180/180 (100%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATK 180
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Zea mays (taxid: 4577) |
| >sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/181 (96%), Positives = 177/181 (97%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKL RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV EARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI+SK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSK 180
Query: 181 V 181
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Salix bakko (taxid: 72444) |
| >sp|O23778|ARF1_CATRO ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/180 (96%), Positives = 178/180 (98%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQY 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Catharanthus roseus (taxid: 4058) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 189 | ||||||
| 413932673 | 206 | hypothetical protein ZEAMMB73_332083 [Ze | 1.0 | 0.917 | 0.957 | 1e-103 | |
| 20161472 | 376 | ADP-ribosylation factor [Oryza sativa Ja | 0.952 | 0.478 | 0.994 | 1e-103 | |
| 357495837 | 248 | ADP-ribosylation factor [Medicago trunca | 0.957 | 0.729 | 0.994 | 1e-103 | |
| 449446863 | 368 | PREDICTED: ADP-ribosylation factor 1-lik | 0.968 | 0.497 | 0.989 | 1e-103 | |
| 125546170 | 354 | hypothetical protein OsI_14032 [Oryza sa | 0.952 | 0.508 | 0.988 | 1e-102 | |
| 357511441 | 206 | ADP-ribosylation factor-like protein [Me | 0.962 | 0.883 | 0.989 | 1e-102 | |
| 6573751 | 186 | F20B24.7 [Arabidopsis thaliana] | 0.984 | 1.0 | 0.973 | 1e-102 | |
| 15241463 | 188 | ADP-ribosylation factor A1B [Arabidopsis | 0.973 | 0.978 | 0.978 | 1e-102 | |
| 449434939 | 189 | PREDICTED: ADP-ribosylation factor 2-lik | 0.962 | 0.962 | 0.989 | 1e-102 | |
| 357485863 | 454 | ADP-ribosylation factor [Medicago trunca | 0.952 | 0.396 | 0.994 | 1e-102 |
| >gi|413932673|gb|AFW67224.1| hypothetical protein ZEAMMB73_332083 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/189 (95%), Positives = 185/189 (97%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATK 180
Query: 181 VSSLTSSES 189
VSS S +
Sbjct: 181 VSSPIMSPT 189
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20161472|dbj|BAB90396.1| ADP-ribosylation factor [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/180 (99%), Positives = 180/180 (100%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 179 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 238
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 239 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 298
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 299 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 358
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357495837|ref|XP_003618207.1| ADP-ribosylation factor [Medicago truncatula] gi|355493222|gb|AES74425.1| ADP-ribosylation factor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/181 (99%), Positives = 180/181 (99%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 68 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 127
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 128 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 187
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 188 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 247
Query: 181 V 181
Sbjct: 248 A 248
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446863|ref|XP_004141190.1| PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/183 (98%), Positives = 183/183 (100%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 185 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 244
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 245 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 304
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 305 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 364
Query: 181 VSS 183
V++
Sbjct: 365 VTA 367
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125546170|gb|EAY92309.1| hypothetical protein OsI_14032 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/180 (98%), Positives = 180/180 (100%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASK 180
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511441|ref|XP_003626009.1| ADP-ribosylation factor-like protein [Medicago truncatula] gi|355501024|gb|AES82227.1| ADP-ribosylation factor-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/182 (98%), Positives = 182/182 (100%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 VS 182
V+
Sbjct: 181 VN 182
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6573751|gb|AAF17671.1|AC009398_20 F20B24.7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/186 (97%), Positives = 182/186 (97%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 VSSLTS 186
V L S
Sbjct: 181 VRLLNS 186
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241463|ref|NP_196971.1| ADP-ribosylation factor A1B [Arabidopsis thaliana] gi|7573316|emb|CAB87634.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|332004678|gb|AED92061.1| ADP-ribosylation factor A1B [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/184 (97%), Positives = 183/184 (99%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
Query: 181 VSSL 184
V++L
Sbjct: 181 VNNL 184
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434939|ref|XP_004135253.1| PREDICTED: ADP-ribosylation factor 2-like isoform 1 [Cucumis sativus] gi|449517565|ref|XP_004165816.1| PREDICTED: ADP-ribosylation factor 2-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/182 (98%), Positives = 181/182 (99%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 VS 182
V
Sbjct: 181 VP 182
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357485863|ref|XP_003613219.1| ADP-ribosylation factor [Medicago truncatula] gi|355514554|gb|AES96177.1| ADP-ribosylation factor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/180 (99%), Positives = 180/180 (100%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 189 | ||||||
| TAIR|locus:2222677 | 188 | ARFA1B "ADP-ribosylation facto | 0.973 | 0.978 | 0.978 | 4.8e-94 | |
| UNIPROTKB|P51823 | 181 | ARF "ADP-ribosylation factor 2 | 0.952 | 0.994 | 0.988 | 4.3e-93 | |
| TAIR|locus:2019948 | 181 | ARFA1F "ADP-ribosylation facto | 0.952 | 0.994 | 0.988 | 7e-93 | |
| TAIR|locus:2065114 | 181 | ARF1A1C [Arabidopsis thaliana | 0.952 | 0.994 | 0.988 | 1.1e-92 | |
| TAIR|locus:2028926 | 181 | ARF1 "ADP-ribosylation factor | 0.952 | 0.994 | 0.983 | 1.9e-92 | |
| TAIR|locus:2026780 | 181 | ARFA1D [Arabidopsis thaliana ( | 0.952 | 0.994 | 0.983 | 1.9e-92 | |
| TAIR|locus:2098063 | 181 | ARFA1E "ADP-ribosylation facto | 0.952 | 0.994 | 0.977 | 5e-92 | |
| UNIPROTKB|P84081 | 181 | ARF2 "ADP-ribosylation factor | 0.952 | 0.994 | 0.888 | 5e-83 | |
| UNIPROTKB|J9NWP6 | 181 | LOC480487 "Uncharacterized pro | 0.952 | 0.994 | 0.888 | 5e-83 | |
| MGI|MGI:99595 | 181 | Arf2 "ADP-ribosylation factor | 0.952 | 0.994 | 0.888 | 5e-83 |
| TAIR|locus:2222677 ARFA1B "ADP-ribosylation factor A1B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 180/184 (97%), Positives = 183/184 (99%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
Query: 181 VSSL 184
V++L
Sbjct: 181 VNNL 184
|
|
| UNIPROTKB|P51823 ARF "ADP-ribosylation factor 2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 178/180 (98%), Positives = 180/180 (100%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
|
|
| TAIR|locus:2019948 ARFA1F "ADP-ribosylation factor A1F" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 178/180 (98%), Positives = 179/180 (99%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
|
|
| TAIR|locus:2065114 ARF1A1C [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 178/180 (98%), Positives = 179/180 (99%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
|
|
| TAIR|locus:2028926 ARF1 "ADP-ribosylation factor 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
Identities = 177/180 (98%), Positives = 178/180 (98%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
|
|
| TAIR|locus:2026780 ARFA1D [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
Identities = 177/180 (98%), Positives = 178/180 (98%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
|
|
| TAIR|locus:2098063 ARFA1E "ADP-ribosylation factor A1E" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 176/180 (97%), Positives = 179/180 (99%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+F KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFGKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
|
|
| UNIPROTKB|P84081 ARF2 "ADP-ribosylation factor 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 160/180 (88%), Positives = 168/180 (93%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG F KLF LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
|
|
| UNIPROTKB|J9NWP6 LOC480487 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 160/180 (88%), Positives = 168/180 (93%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG F KLF LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKTQ 180
|
|
| MGI|MGI:99595 Arf2 "ADP-ribosylation factor 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 160/180 (88%), Positives = 168/180 (93%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG F KLF LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O48920 | ARF_VIGUN | No assigned EC number | 0.9888 | 0.9523 | 0.9944 | N/A | no |
| P51644 | ARF4_XENLA | No assigned EC number | 0.8222 | 0.9523 | 1.0 | N/A | no |
| O00909 | ARF1_DICDI | No assigned EC number | 0.8659 | 0.9470 | 0.9835 | yes | no |
| P51643 | ARF1_XENLA | No assigned EC number | 0.8833 | 0.9523 | 0.9944 | N/A | no |
| P91924 | ARF_DUGJA | No assigned EC number | 0.8777 | 0.9523 | 0.9836 | N/A | no |
| P36397 | ARF1_ARATH | No assigned EC number | 0.9888 | 0.9523 | 0.9944 | yes | no |
| Q61LA8 | ARF12_CAEBR | No assigned EC number | 0.8722 | 0.9523 | 0.9944 | N/A | no |
| Q7RVM2 | ARF_NEUCR | No assigned EC number | 0.8806 | 0.9312 | 0.9513 | N/A | no |
| Q3SZF2 | ARF4_BOVIN | No assigned EC number | 0.8222 | 0.9523 | 1.0 | no | no |
| P61210 | ARF1_LOCMI | No assigned EC number | 0.8770 | 0.9470 | 0.9835 | N/A | no |
| P84082 | ARF2_RAT | No assigned EC number | 0.8888 | 0.9523 | 0.9944 | yes | no |
| P84083 | ARF5_RAT | No assigned EC number | 0.8111 | 0.9523 | 1.0 | no | no |
| P84080 | ARF1_BOVIN | No assigned EC number | 0.8833 | 0.9523 | 0.9944 | yes | no |
| P84081 | ARF2_BOVIN | No assigned EC number | 0.8888 | 0.9523 | 0.9944 | yes | no |
| Q5R5P7 | ARF3_PONAB | No assigned EC number | 0.8722 | 0.9523 | 0.9944 | yes | no |
| Q10943 | ARF12_CAEEL | No assigned EC number | 0.8666 | 0.9523 | 0.9944 | no | no |
| P84084 | ARF5_MOUSE | No assigned EC number | 0.8111 | 0.9523 | 1.0 | no | no |
| P22274 | ARF_CANAL | No assigned EC number | 0.8258 | 0.9417 | 0.9944 | N/A | no |
| P51822 | ARF1_DAUCA | No assigned EC number | 0.9888 | 0.9523 | 0.9944 | N/A | no |
| P51823 | ARF2_ORYSJ | No assigned EC number | 0.9888 | 0.9523 | 0.9944 | yes | no |
| P51821 | ARF1_CHLRE | No assigned EC number | 0.9611 | 0.9523 | 0.9944 | N/A | no |
| P51824 | ARF1_SOLTU | No assigned EC number | 0.9090 | 0.9894 | 0.9492 | N/A | no |
| P84077 | ARF1_HUMAN | No assigned EC number | 0.8833 | 0.9523 | 0.9944 | yes | no |
| P36579 | ARF1_SCHPO | No assigned EC number | 0.8555 | 0.9523 | 1.0 | yes | no |
| P84085 | ARF5_HUMAN | No assigned EC number | 0.8111 | 0.9523 | 1.0 | no | no |
| P61209 | ARF1_DROME | No assigned EC number | 0.8770 | 0.9470 | 0.9835 | yes | no |
| P84079 | ARF1_RAT | No assigned EC number | 0.8833 | 0.9523 | 0.9944 | yes | no |
| P84078 | ARF1_MOUSE | No assigned EC number | 0.8833 | 0.9523 | 0.9944 | yes | no |
| P18085 | ARF4_HUMAN | No assigned EC number | 0.8111 | 0.9523 | 1.0 | no | no |
| P0CM17 | ARF_CRYNB | No assigned EC number | 0.8666 | 0.9523 | 0.9890 | N/A | no |
| P0CM16 | ARF_CRYNJ | No assigned EC number | 0.8666 | 0.9523 | 0.9890 | yes | no |
| Q06396 | ARF1_ORYSJ | No assigned EC number | 0.9944 | 0.9523 | 0.9944 | yes | no |
| P40945 | ARF2_DROME | No assigned EC number | 0.8444 | 0.9523 | 1.0 | no | no |
| P61205 | ARF3_MOUSE | No assigned EC number | 0.8722 | 0.9523 | 0.9944 | no | no |
| P61204 | ARF3_HUMAN | No assigned EC number | 0.8722 | 0.9523 | 0.9944 | yes | no |
| P61207 | ARF3_TAKRU | No assigned EC number | 0.8722 | 0.9523 | 0.9944 | N/A | no |
| P61206 | ARF3_RAT | No assigned EC number | 0.8722 | 0.9523 | 0.9944 | no | no |
| O48649 | ARF1_SALBA | No assigned EC number | 0.9613 | 0.9576 | 1.0 | N/A | no |
| Q8BSL7 | ARF2_MOUSE | No assigned EC number | 0.8888 | 0.9523 | 0.9944 | yes | no |
| Q5RCF1 | ARF4_PONAB | No assigned EC number | 0.8111 | 0.9523 | 1.0 | no | no |
| Q9LQC8 | ARF2A_ARATH | No assigned EC number | 0.9833 | 0.9523 | 0.9944 | yes | no |
| P49076 | ARF_MAIZE | No assigned EC number | 0.9777 | 0.9523 | 0.9944 | N/A | no |
| Q4R5P2 | ARF1_MACFA | No assigned EC number | 0.8833 | 0.9523 | 0.9944 | N/A | no |
| P34727 | ARF_AJECA | No assigned EC number | 0.8531 | 0.9365 | 0.9672 | N/A | no |
| Q5E9I6 | ARF3_BOVIN | No assigned EC number | 0.8722 | 0.9523 | 0.9944 | no | no |
| P49702 | ARF5_CHICK | No assigned EC number | 0.8 | 0.9523 | 1.0 | no | no |
| P0DH91 | ARF2B_ARATH | No assigned EC number | 0.9833 | 0.9523 | 0.9944 | yes | no |
| Q75A26 | ARF_ASHGO | No assigned EC number | 0.8222 | 0.9523 | 0.9944 | yes | no |
| P61751 | ARF4_RAT | No assigned EC number | 0.8111 | 0.9523 | 1.0 | no | no |
| O23778 | ARF1_CATRO | No assigned EC number | 0.9666 | 0.9523 | 0.9944 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 189 | |||
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 1e-137 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 1e-129 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 1e-127 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 1e-122 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 1e-113 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 1e-108 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 1e-105 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 3e-93 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 1e-87 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 7e-71 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 2e-69 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 1e-68 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 6e-68 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 9e-61 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 2e-57 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 2e-46 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 4e-42 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 1e-39 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 6e-37 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 1e-33 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 1e-30 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 5e-30 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 3e-19 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-17 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 3e-15 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 5e-14 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 6e-13 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 3e-12 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 6e-11 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 3e-10 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 9e-10 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 4e-09 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 8e-09 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 2e-08 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 3e-08 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 1e-07 | |
| smart00275 | 342 | smart00275, G_alpha, G protein alpha subunit | 3e-07 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 4e-07 | |
| cd00066 | 315 | cd00066, G-alpha, Alpha subunit of G proteins (gua | 7e-07 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 7e-07 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 2e-06 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 3e-06 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 3e-06 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 4e-06 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 5e-06 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 6e-06 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 6e-06 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 1e-05 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 1e-05 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 1e-05 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 1e-05 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 2e-05 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 2e-05 | |
| pfam04670 | 230 | pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve | 2e-05 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 3e-05 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 4e-05 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 4e-05 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 7e-05 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 7e-05 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 2e-04 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 2e-04 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 3e-04 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 4e-04 | |
| cd09915 | 175 | cd09915, Rag, Rag GTPase subfamily of Ras-related | 4e-04 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 4e-04 | |
| COG0536 | 369 | COG0536, Obg, Predicted GTPase [General function p | 5e-04 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 6e-04 | |
| cd04121 | 189 | cd04121, Rab40, Rab GTPase family 40 (Rab40) conta | 9e-04 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 0.001 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 0.004 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 0.004 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 380 bits (976), Expect = e-137
Identities = 178/180 (98%), Positives = 180/180 (100%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
|
Length = 181 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 357 bits (919), Expect = e-129
Identities = 148/159 (93%), Positives = 156/159 (98%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RMLNEDELRDAVLLVFANKQDLPNAM+AA
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
E+TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSNN
Sbjct: 121 EVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNN 159
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 354 bits (911), Expect = e-127
Identities = 141/182 (77%), Positives = 161/182 (88%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL + F LF KKE+RILMVGLDAAGKTTILYKLKLGE+VTTIPTIGFNVETVEYKN
Sbjct: 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
+ FT+WDVGGQDK+RPLWRHY+QNT GLIFVVDSNDR+R+ +AR+EL RML+EDELRDAV
Sbjct: 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAM+ E+T+KLGLHS+RQR+WYIQ CAT+ +GLYEGLDWLS NI
Sbjct: 121 LLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180
Query: 181 VS 182
+
Sbjct: 181 MQ 182
|
Length = 182 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 343 bits (880), Expect = e-122
Identities = 150/175 (85%), Positives = 162/175 (92%)
Query: 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
KLFS+LF KEMRILMVGLDAAGKTTILYKLKLGE VTTIPTIGFNVETV YKNISFT
Sbjct: 1 MGKLFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFT 60
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
VWDVGGQDKIRPLWRHY+ NTQGLIFVVDSNDRDR+ EAR+ELHRMLNEDELRDAV+LVF
Sbjct: 61 VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVF 120
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
ANKQDLP+AM AAEIT+KLGLHS+R R+WYIQ TCATSG+GLYEGL WLSNN+ +
Sbjct: 121 ANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNLKN 175
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = e-113
Identities = 121/174 (69%), Positives = 141/174 (81%), Gaps = 1/174 (0%)
Query: 5 FTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
F + ++LF KEMRIL++GLD AGKTTILYKLKLGEIVTTIPTIGFNVETV YKN+ F
Sbjct: 1 FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
TVWDVGGQ+ +RPLWR+YF NT +IFVVDS DRDR+ EA++ELH +LNE+EL DA LL+
Sbjct: 61 TVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLI 120
Query: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
ANKQDLP AM+ AEI + LGLH L+ R W IQ A +GEGL EGLDWLSN I
Sbjct: 121 LANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 307 bits (788), Expect = e-108
Identities = 126/168 (75%), Positives = 146/168 (86%)
Query: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
S+LF KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDV
Sbjct: 1 LSKLFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 60
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
GGQDKIRPLWRHY+ TQGLIFVVDS DRDR+ EAR ELHR++N+ E+RDA+LLVFANKQ
Sbjct: 61 GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQ 120
Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
DLP+AM EI +KLGL +R R+WY+Q +CATSG+GLYEGL WLS+N
Sbjct: 121 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSSN 168
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 299 bits (768), Expect = e-105
Identities = 110/158 (69%), Positives = 135/158 (85%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
RILM+GLD AGKTTILYKLKLGE+VTTIPTIGFNVETVEYKN+ FTVWDVGGQDKIRPLW
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
+HY++NT GLIFVVDS+DR+R+ EA++ELH++LNE+EL+ A LL+ ANKQDLP A+ +E
Sbjct: 61 KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
+ + LGL S++ R W+IQ A +G+GL EGLDWL
Sbjct: 121 LIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 268 bits (686), Expect = 3e-93
Identities = 103/157 (65%), Positives = 126/157 (80%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ IRP W
Sbjct: 1 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
R Y+ NT +I+VVDS DRDR+ ++ ELH ML E+EL+DAVLLVFANKQD+P A++ AE
Sbjct: 61 RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175
+ +KLGL L+ R W I T AT GEGL EG+DWL N
Sbjct: 121 VAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLVN 157
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 1e-87
Identities = 94/174 (54%), Positives = 127/174 (72%)
Query: 3 LTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
L F+ L+S F +KE ++++VGLD AGKTTILY+ LGE+V T PTIG NVE + YKNI
Sbjct: 1 LLFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIR 60
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
F +WD+GGQ+ +R W Y+ NT +I V+DS DR+R+ ++EL++ML ++LR AVLL
Sbjct: 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLL 120
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
V ANKQDL AM AEI++ LGL S+R W+IQ CA +GEGL EGLDW+++
Sbjct: 121 VLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 212 bits (540), Expect = 7e-71
Identities = 99/162 (61%), Positives = 125/162 (77%), Gaps = 1/162 (0%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW
Sbjct: 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
+HY+ NTQ ++FV+DS+ RDRV EA EL ++L E ELRDA+LL+FANKQD+ A++ E
Sbjct: 61 KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120
Query: 139 ITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
+T+ L LH L R WYIQ A SG GLYEGLDWLS + +
Sbjct: 121 MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 2e-69
Identities = 83/162 (51%), Positives = 115/162 (70%), Gaps = 2/162 (1%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKI 74
+EMRILM+GLD AGKTTIL K GE ++TI PT+GFN++T+EY +WDVGGQ +
Sbjct: 13 REMRILMLGLDNAGKTTILKKF-NGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSL 71
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R WR+YF++T LI+VVDS+DR R+ + + EL ++L E+ L A LL+FANKQDLP A+
Sbjct: 72 RSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGAL 131
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
+ EI + L L S++ HW I A +GE L +G+DWL ++
Sbjct: 132 SPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVDD 173
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 1e-68
Identities = 82/166 (49%), Positives = 112/166 (67%)
Query: 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG 70
+ +++E+RIL++GLD AGKTTIL +L +I PT GFN++ V+ VWD+GG
Sbjct: 9 KPSSRQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGG 68
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q KIRP WR+YF+NT LI+V+DS DR R EA EL +L E++L +LVFANKQDL
Sbjct: 69 QRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDL 128
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
A A E+ + L LH +R R W+IQ+ A +GEGL EG++W+ N
Sbjct: 129 LTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVCKN 174
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 6e-68
Identities = 76/154 (49%), Positives = 111/154 (72%), Gaps = 2/154 (1%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL 77
++L++GLD+AGK+T+LYKLK E+VTTIPT+GFNVE ++ K++S TVWDVGGQ+K+R +
Sbjct: 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
W+ Y +NT GL++VVDS+D R+ E++ EL +L + ++ +++ ANKQDLP A+ A
Sbjct: 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120
Query: 138 EITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGL 170
EIT + L R WY+Q A +GEGL E
Sbjct: 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 9e-61
Identities = 81/166 (48%), Positives = 111/166 (66%), Gaps = 6/166 (3%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQD 72
+ I+M+GLD+AGKTT+LY+LK E V T+PT GFN E ++ K ++F WDVGGQ+
Sbjct: 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++ E + +LV ANKQDLPN
Sbjct: 64 KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPN 123
Query: 133 AMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
A+ +E+ L LH L W++Q CA GEGL EGL+ L I
Sbjct: 124 ALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMI 169
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 2e-57
Identities = 76/160 (47%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
IL++GLD +GKTTI+ +LK + PT+GFNVE+ + N+SFT +D+ GQ K R L
Sbjct: 2 ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMN 135
W HY++N QG+IFV+DS+DR R+V A+DEL +LN ++ R +L +ANK DLP+A+
Sbjct: 62 WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175
A +IT L L +++ + W+I ++ A +GEGL EG+DWL
Sbjct: 122 AVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQA 161
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 2e-46
Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 13/186 (6%)
Query: 5 FTKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
F + S L KKE +I+ +GLD AGKTT+L+ LK + +PT+ E + N+ F
Sbjct: 6 FYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVKF 65
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
T +D+GG ++ R +W+ YF G++F+VD+ D +R E+++EL +LN++EL + +L+
Sbjct: 66 TTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILI 125
Query: 124 FANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLD 171
NK D P A++ E+ + LGL+ R + +G EG
Sbjct: 126 LGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGFR 185
Query: 172 WLSNNI 177
WLS +
Sbjct: 186 WLSQYL 191
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 4e-42
Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 16/168 (9%)
Query: 20 ILMVGLDAAGKTTILYKLK-----------LGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
+L++GLD AGKTT L + K +I PT+G N+ T+E WD+
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKIT---PTVGLNIGTIEVGKARLMFWDL 58
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
GGQ+++R LW Y+ + G+I+V+DS DR+R E++ +++N + L LLV ANKQ
Sbjct: 59 GGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQ 118
Query: 129 DLPNAMNAAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174
DLP+A++ AEI + + + +R +Q A GEG+ EG++WL
Sbjct: 119 DLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLV 166
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-39
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
I +VGL +GKTT++ + G+ TIPT+GFN+ V N++ VWD+GGQ + R +W
Sbjct: 2 ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMW 61
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
Y + +++VVD+ DR+++ A++ELH +L + L LLV NK DLP A++ E
Sbjct: 62 ERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDE 121
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
+ +++ L S+ R S A + LDWL +
Sbjct: 122 LIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIKH 159
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 6e-37
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 6/146 (4%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
IL++GLD AGKT++L+ L E + +PT GFN + ++ + ++GG +R
Sbjct: 2 ILVLGLDGAGKTSLLHSLS-SERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
W+ Y +QGLIFVVDS D +R+ AR ELH++L D L+V ANKQDLP A +
Sbjct: 61 WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPP--DLPLVVLANKQDLPAARSVQ 118
Query: 138 EITDKLGLHSL-RQRHWYIQSTCATS 162
EI +L L + R R W +Q T
Sbjct: 119 EIHKELELEPIARGRRWILQGTSLDD 144
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-33
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79
+L VGLD AGKTT++ L+ PT+GF + ++D+GG R +W
Sbjct: 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61
Query: 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139
+Y+ GL+FVVDS+D DRV E ++ L +L + +LV ANKQD NA+ A++
Sbjct: 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121
Query: 140 TDKLGLHSLRQR---HWYIQSTCATSGEG------LYEGLDWL 173
+ L L L +I+ A G G + EGL WL
Sbjct: 122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 1e-30
Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 11/172 (6%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
K +IL +GLD AGKTT+L+ LK + PT E + NI FT +D+GG +
Sbjct: 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQA 74
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R LW+ YF G++++VD+ D++R E++ EL +L+++EL L+ NK D P A
Sbjct: 75 RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134
Query: 135 NAAEITDKLGLHSL---------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ E+ LGL + R ++ S G G EG WLS I
Sbjct: 135 SEDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYG--EGFKWLSQYI 184
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 5e-30
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----KNISFTVWD 67
KE +I+++G GKTT+L +L E PTIG +NI +WD
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
Query: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127
GQ++ R L Y++ G++ V DS R+ E +E L E D +L+ NK
Sbjct: 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120
Query: 128 QDLPNAMNAAEI 139
DL + +++E
Sbjct: 121 IDLFDEQSSSEE 132
|
Length = 219 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 3e-19
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 7/124 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVET--VEYKNISFTV--WDVGG 70
E++I++VG GK+T+L +L + I P N T +E ++ D G
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-DAVLLVFANKQD 129
Q+ + R Y++ + + V D VE E +++ NK D
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120
Query: 130 LPNA 133
L +A
Sbjct: 121 LRDA 124
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-17
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 16/162 (9%)
Query: 23 VGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEY--KNISFTVWDVGGQDKIRP 76
VG GK+++L L GE+ T +V E + + D G D+
Sbjct: 3 VGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGG 62
Query: 77 LW-----RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
L R + ++ VVDS DR+ +A+ + R L ++ + +++ NK DL
Sbjct: 63 LGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP---IILVGNKIDLL 119
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
E+ + + A +GEG+ E + L
Sbjct: 120 EEREVEEL--LRLEELAKILGVPVFEVSAKTGEGVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-15
Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV---EYKNISFTVWDVGGQDKIRP 76
+L++G +GKT + KL G++ +T+ +I NV + K T+ DV G +K+R
Sbjct: 3 VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLVDVPGHEKLRD 62
Query: 77 -LWRHYFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAV--LLVFANKQDLPN 132
L + + + ++FVVDS + + + + L+ +L + E +L+ NKQDL
Sbjct: 63 KLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLFT 122
Query: 133 AMNAAEITDKL 143
A A +I + L
Sbjct: 123 AKPAKKIKELL 133
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-14
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 25/181 (13%)
Query: 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-------------TIGFNVETV 56
S E +I+++G AGKTT + L +V T T+ + ++
Sbjct: 3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI 62
Query: 57 EYKNISFTVWDVG--GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114
E V G GQ++ + +W + G I +VDS+ R A +++
Sbjct: 63 ELDE-DTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSS-RPITFHAE----EIIDFL 116
Query: 115 ELRDAV-LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
R+ + ++V NKQDL +A+ +I + L L L + AT GEG + LD L
Sbjct: 117 TSRNPIPVVVAINKQDLFDALPPEKIREALKLELL---SVPVIEIDATEGEGARDQLDVL 173
Query: 174 S 174
Sbjct: 174 L 174
|
Length = 187 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 6e-13
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 18 MRILMVGLDAA-GKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQ 71
+I+++G D+ GKT++L + + TIG F +T+E K + +WD GQ
Sbjct: 1 FKIVLIG-DSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQ 59
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ R + Y++ G I V D +R+ + + +EL + +++ NK
Sbjct: 60 ERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPP----NIPIILVGNKS 115
Query: 129 DLPN 132
DL +
Sbjct: 116 DLED 119
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-12
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVE--TVEYKNISFTVWDVGGQDK 73
+IL++G GK+++L + + TIG F V+ TV+ K + +WD GQ++
Sbjct: 2 KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQER 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----RDAVLLVFANKQD 129
R L Y++ QG+I V D RD D L LNE + DAV ++ NK D
Sbjct: 62 FRTLTSSYYRGAQGVILVYDVTRRDTF----DNLDTWLNELDTYSTNPDAVKMLVGNKID 117
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
N E+T + G R+ + T A + G+ + + L I
Sbjct: 118 KEN----REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 6e-11
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 74
+IL++G GK+++L + PTIG + + TV K + T+WD GQ++
Sbjct: 16 KILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----RDAVLLVFANKQD 129
R L Y++N QG+I V D R+ D + E EL +D V ++ NK D
Sbjct: 76 RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGK---EVELYSTNQDCVKMLVGNKVD 131
|
Length = 211 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-10
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++++VG GK+++L + + IPTIG F +T+E K + +WD GQ++
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 130
R L Y++ QG + V D RD + +E+ R +E + +++ NK DL
Sbjct: 61 FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE----NVPIVLVGNKCDL 116
Query: 131 PN 132
+
Sbjct: 117 ED 118
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 9e-10
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GK+++L + G+ TIG F +T+E K + +WD GQ+
Sbjct: 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D +R + + EL + + V+++ NK D
Sbjct: 61 RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASP----NVVIMLVGNKSD 116
Query: 130 LPN 132
L
Sbjct: 117 LEE 119
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-09
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI--GFNVETVEYKNISFTVWDVGGQD 72
+ +++ GL +GKT++ L G + T+ + + + +K SFT+ D G
Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKYMLHKGFSFTLIDFPGHV 60
Query: 73 KIRP--LWRH-YFQNTQGLIFVVDSN-DRDRVVEARDELHRMLNEDEL-RDAV-LLVFAN 126
K+R L + +G++FVVDS V + + L+ +L+ EL ++ + +L+ N
Sbjct: 61 KLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACN 120
Query: 127 KQDLPNAMNAAEITDKL 143
KQ+ A +I L
Sbjct: 121 KQESFTARPPKKIKQAL 137
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 8e-09
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+ T G ++K + F ++DVGGQ R W H F++ +IFVV ++ D+V+ D
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212
Query: 106 ELHRM----------LNEDELRDAVLLVFANKQDL 130
+R+ N ++ +++F NK+DL
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-08
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDL 130
+ R + Y++ G+I V D D + + M N DE D ++ NK D+
Sbjct: 64 RFRTITTSYYRGAMGIILVYDITDEKSFENIK---NWMRNIDEHASEDVERMLVGNKCDM 120
Query: 131 PN 132
Sbjct: 121 EE 122
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-08
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++L++G GK+ +L + + I TIG F + T+E K + +WD GQ++
Sbjct: 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G+I V D D++ V + E+ R +E+ + LLV NK DL
Sbjct: 64 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLV-GNKCDL 119
Query: 131 PNA-----MNAAEITDKLGL 145
+ A E D+LG+
Sbjct: 120 TDKKVVDYTEAKEFADELGI 139
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLG-----EIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+++++G GKT+++ + TT + + K I +WD GQ+
Sbjct: 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ L Y+++ G I V D D D +V + EL +M + L++ NK D
Sbjct: 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKID 116
Query: 130 LPN 132
L
Sbjct: 117 LER 119
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-07
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+PT G K + F ++DVGGQ R W H F N +IF V ++ D+V+E +
Sbjct: 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE 228
Query: 106 ELHRM----------LNEDELRDAVLLVFANKQDL 130
+RM N + +++F NK DL
Sbjct: 229 STNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263
|
Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 4e-07
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 48 TIG--FNVETVEYKNISFTV--WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
TIG F +E E + F++ WD GQ++ + + Y++ Q +I V D D +
Sbjct: 32 TIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT 91
Query: 104 RDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
R L L E++ +L + K+DL + + ++ + R+ + A +G
Sbjct: 92 RQWLEDALKENDPSSVLLFLVGTKKDLSSP-AQYALMEQDAIKLAREMKAEYWAVSALTG 150
Query: 164 EGLYEGLDWLSNNIASKVSSLT 185
E + + +V+SLT
Sbjct: 151 ENVRD--------FFFRVASLT 164
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding) | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 7e-07
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+ T G KN+ F ++DVGGQ R W H F++ +IFVV ++ D+V+ +
Sbjct: 146 VKTTGIIETDFSIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDE 205
Query: 106 ELHRML-----------NEDELRDAVLLVFANKQDL 130
++RM + +++L F NK+DL
Sbjct: 206 SVNRMQESLKLFDSICNSRWFANTSIIL-FLNKKDL 240
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 7e-07
Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN------------IS 62
+++L +G GKTT LY+ + I T+G F + V Y + +
Sbjct: 5 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
+WD GQ++ R L +F++ G + + D + R+ + ++ + ++
Sbjct: 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV 124
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
+ NK DLP + A E+ DK G+ Y + T A +G+ + + ++ L
Sbjct: 125 LIGNKADLPDQREVSERQARELADKYGIP-------YFE-TSAATGQNVEKAVETL 172
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-06
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
+I+++G GK+ IL + E + + TIG T VE K + +WD GQ++
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-----AVLLVFANKQ 128
R + Y++ G + V D R + D + R L ELRD V+++ NK
Sbjct: 74 YRAITSAYYRGAVGALLVYDITKR----QTFDNVQRWLR--ELRDHADSNIVIMMAGNKS 127
Query: 129 DLPNAMNAAE 138
DL + + AE
Sbjct: 128 DLNHLRSVAE 137
|
Length = 216 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-06
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+I+++G GKT + Y+ G T TIG F TVE + I +WD GQ++
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63
Query: 74 IR-PLWRHYFQNTQGLIFVVD 93
R + +HY++N ++FV D
Sbjct: 64 FRKSMVQHYYRNVHAVVFVYD 84
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-06
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN----VETVEYKNISFTVWDVGGQD 72
++++VG GKT +L + K G + + I T+G V TV+ + +WD GQ+
Sbjct: 2 KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ R + Y+++ L+ + D ++ R L +L E D V+++ NK D+
Sbjct: 62 RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEIL-EYAQSDVVIMLLGNKADM 118
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-06
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNIS--FTVWDVGGQDK 73
R+L++G GKT +L + E ++ I TIG F ++T+E I +WD GQ++
Sbjct: 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61
Query: 74 IRPLWRHYFQNTQGLIFVVD 93
+ + + Y++ QG+ V D
Sbjct: 62 YQTITKQYYRRAQGIFLVYD 81
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-06
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+I+++G GKT ++ + K G TIG F ++T+E K + +WD GQ++
Sbjct: 5 KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA---VLLVFANKQDL 130
R + + Y+++ G I D R + + + + E E A VLL+ NK DL
Sbjct: 65 FRTITQSYYRSANGAIIAYDITRR----SSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-06
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 19 RILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+++L + G +TTI + F + TVE + + +WD GQ+
Sbjct: 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTI-GVDFKIRTVEINGERVKLQIWDTAGQE 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ R + Y++ T G+I V D + + V + L + + VL+ NK D P
Sbjct: 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLV--GNKNDDP 123
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-06
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN----ISFTVWDVGGQDK 73
++++VG GKTT + + GE + T+G V +++ I F VWD GQ+K
Sbjct: 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97
L Y+ Q I + D R
Sbjct: 62 FGGLRDGYYIQGQCAIIMFDVTSR 85
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-05
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 49 IGFNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE 106
+ F ++TVE K I +WD GQ++ + Y+++ +G+I V D + E D+
Sbjct: 35 VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK----ETFDD 90
Query: 107 L---HRMLNEDELRDAVLLVFANKQD 129
L +M+++ DA LL+ NK D
Sbjct: 91 LPKWMKMIDKYASEDAELLLVGNKLD 116
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 33/169 (19%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET-----VEYKNISFTVWDVG 69
E ++++VG GKT++ +L +GE T G NV+ E K I VWD G
Sbjct: 1 EAKLMLVGQGGVGKTSLCKQL-IGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFG 59
Query: 70 GQDKIRPLWRHYFQNTQGLIFVV----DSNDRDRV------VEARDELHRMLNEDELRDA 119
GQ+ + F ++ L +V ++ RV ++A
Sbjct: 60 GQEIYHATHQF-FLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGG----------VSP 108
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
V+LV D +I K I +G+G+ E
Sbjct: 109 VILV-GTHID---ESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAE 153
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNISFTV--WDVGGQDK 73
+++ +G GK+ I+ + G V+ +PTIG + V+ V +N V +D+ G +
Sbjct: 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDR-------VVEARDELHRMLNEDELRDAVLLVFAN 126
+ ++++TQG++ V D DR + E + E N + + V++V AN
Sbjct: 62 YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGN---MENIVVVVCAN 118
Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQ-STCATSGEGLYEGLDWLSNNI 177
K DL +E +L + + T A +GEG+ E L ++I
Sbjct: 119 KIDLTKHRAVSEDEGRL----WAESKGFKYFETSACTGEGVNEMFQTLFSSI 166
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-05
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+++++G + GK++I+ + E TIG F +TV + F +WD GQ++
Sbjct: 3 KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 130
R L Y++ I V D + +A+ EL + V+ + NK DL
Sbjct: 63 YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPP----NIVIALAGNKADL 118
Query: 131 PN 132
+
Sbjct: 119 ES 120
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 24/129 (18%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-----VETVEYKNISFTVWDVGGQD 72
R++++G GK+++L + G + PT+G + +E I +WD GQ+
Sbjct: 4 RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR-------DRVVEARDEL--HRMLNEDELRDAVLLV 123
+ R + R Y++N+ G++ V D +R D + EAR + HR V ++
Sbjct: 64 RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRP---------VFIL 114
Query: 124 FANKQDLPN 132
+K DL +
Sbjct: 115 VGHKCDLES 123
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 71
++++VG A GKT++LY LGE PT+ N T V+ K + +WD GQ
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62
Query: 72 DKIRPLWRHYFQNTQGLI-FVVDSND 96
+++RPL Y + LI F +D+ D
Sbjct: 63 ERLRPL--SYSKAHVILIGFAIDTPD 86
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-05
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 19 RILMVGLDAAGKTT----ILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDK 73
++L++GL +GK++ I + + TI V + N++ +WD GQD
Sbjct: 1 KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDD 60
Query: 74 IRPLWRHY-----FQNTQGLIFVVDSNDRD 98
+ F N LI+V D R+
Sbjct: 61 FMENYLTRQKEHIFSNVGVLIYVFDVESRE 90
|
GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-05
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 19 RILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETV--EYKNISFTVWDVGGQD 72
++L++G + GKT+ L++ V+T+ I F V+TV K I +WD GQ+
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVYRNDKRIKLQIWDTAGQE 61
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G I + D + + +D ++ V+LV NK D+ +
Sbjct: 62 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILV-GNKCDMED 120
Query: 133 -----AMNAAEITDKLGL 145
A ++ D+LG
Sbjct: 121 ERVVSAERGRQLADQLGF 138
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-05
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKN----ISFTVWDVGGQDK 73
++++VG GKTT + + GE PTIG V +++ I F WD GQ+K
Sbjct: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97
L Y+ + Q I + D R
Sbjct: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
|
Length = 219 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 4e-05
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
+ +WD GQ++ R L Y +++ I V D +R + +LNE +D +
Sbjct: 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVI 87
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
+ + NK DL + ++T + G+ ++ + T A +G + L IA+K
Sbjct: 88 IALVGNKTDLGDLR---KVTYEEGMQKAQEYNTMFHETSAKAG----HNIKVLFKKIAAK 140
Query: 181 VSSLTSSES 189
+ +L +S S
Sbjct: 141 LPNLDNSNS 149
|
Length = 176 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 7e-05
Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEYKNISFTVWDVGGQDK 73
+++++G +GK+++L +L GE T+ + V+ +WD GG+++
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + + ++ V D DR+ V L + +++ NK
Sbjct: 61 LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL--RKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 7e-05
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDVG 69
+I+++G GKT ++ + G P TIG F ++TVE K I +WD
Sbjct: 9 KIVLIGNAGVGKTCLVRRFTQG----LFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVD 93
GQ++ R + + Y+++ LI D
Sbjct: 65 GQERFRSITQSYYRSANALILTYD 88
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFN----VETVEYKNISFTVWDVGGQDK 73
+ L++G GK+ +L++ + TIG V V K++ +WD GQ++
Sbjct: 2 KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH--RMLNEDELRDAVLLVFANKQDLP 131
R + R Y++ G + V D R+ + L R L D V+++ NK+DL
Sbjct: 62 FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASP---DIVIILVGNKKDLE 118
Query: 132 NA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
+ + A+ + GL L T A +GE + E
Sbjct: 119 DDREVTFLEASRFAQENGLLFLE--------TSALTGENVEE 152
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET-VEYKNISFTV--WDVGGQ---D 72
I++VG A GKT +L + T +PT+ N V + WD GQ D
Sbjct: 3 IVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYD 62
Query: 73 KIRPL 77
++RPL
Sbjct: 63 RLRPL 67
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 3e-04
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 8/177 (4%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNISFTVWDVGGQDKIR 75
++++++G GKT++L++ T+ T+G F ++ NIS +WD G+++
Sbjct: 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNIS--IWDTAGREQFH 58
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
L Y + +I D ++ + E D + + D + V NK DL
Sbjct: 59 GLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLT-DTANEDCLFAVVGNKLDLTEEGA 117
Query: 136 -AAEITDKLGLHSLR-QRHWYIQSTCATSGEGL-YEGLDWLSNNIASKVSSLTSSES 189
A + D S QR ++ A Y+ LD + A K+ TS+++
Sbjct: 118 LAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 4e-04
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 22 MVGLDAAGKTTILYKL-----KLG--EIVTTIPTIGFNVETVEYKNI-SFTVWDVGG--- 70
+VGL AGK+T+L + K+ T +P +G V + SF + D+ G
Sbjct: 5 LVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLG----VVRVDDGRSFVIADIPGLIE 60
Query: 71 ---QDK---IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN--EDELRDAVLL 122
+ K R L RH + T+ L+ V+D + D VE + + L L + +
Sbjct: 61 GASEGKGLGHRFL-RH-IERTRVLLHVIDLSGEDDPVEDYETIRNELEAYNPGLAEKPRI 118
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181
V NK DL +A E +L L L+ + + S A +GEGL E L +A +
Sbjct: 119 VVLNKIDLLDAEERFEKLKEL-LKELKGKKVFPIS--ALTGEGLDE----LLKKLAKLL 170
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 4e-04
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDK 73
++L+ G +GK++I + + + TI + + N + +WD GQD
Sbjct: 1 KLLLXGRRRSGKSSIRKVVFHNYSPFDTLRLESTIDVEHSHLSFLGNXTLNLWDCPGQDV 60
Query: 74 IRPL---WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR----DAVLLVFAN 126
H FQ LI+V+D +D ++A L + L + DA + V +
Sbjct: 61 FFEPTKDKEHIFQXVGALIYVIDV--QDEYLKAITILAKAL--KQAYKVNPDANIEVLIH 116
Query: 127 KQDL 130
K D
Sbjct: 117 KVDG 120
|
Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 4e-04
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
E ++++VG GKTT + + GE IPT+G V +++ I F VWD GQ
Sbjct: 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD 98
+K L Y+ Q I + D R
Sbjct: 69 EKFGGLRDGYYIKGQCAIIMFDVTSRI 95
|
Length = 215 |
| >gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 5e-04
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 30/145 (20%)
Query: 22 MVGLDAAGKTTILYKL-----KLG--EIVTTIPTIGFNVETVEYKNISFTVWDVGG---- 70
+VGL AGK+T+L + K+ T +P +G V + SF V D+ G
Sbjct: 164 LVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGV-VRVDGGE--SFVVADIPGLIEG 220
Query: 71 --QDK---IRPLWRHYFQNTQGLIFVVD--SNDRDRVVEA----RDELHRMLNEDELRDA 119
+ +R L RH + T+ L+ V+D D +E R+EL + +L +
Sbjct: 221 ASEGVGLGLRFL-RH-IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEK 276
Query: 120 VLLVFANKQDLPNAM-NAAEITDKL 143
+V NK DLP E+ L
Sbjct: 277 PRIVVLNKIDLPLDEEELEELKKAL 301
|
Length = 369 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 6e-04
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 21 LMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEY--KNISFTVWDVGGQDKIR 75
+++G GK+ +L++ + + P TIG F +E + I +WD GQ++ R
Sbjct: 6 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65
Query: 76 PLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ R Y++ G + V D R + + + + N + V+ + NK DL
Sbjct: 66 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIFLIGNKADL 119
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 9e-04
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETV--EYKNISFTVWDVGGQD 72
++ L+VG GK IL L+ G + I + T+ + + + +WD GQ
Sbjct: 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR------DRVVEARDE 106
+ ++R Y + QG+I V D +R DR ++ DE
Sbjct: 67 RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE 106
|
The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 38.1 bits (88), Expect = 0.001
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 23 VGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDKIRPL 77
VG GKTT + + GE + T+G V + + I F VWD GQ+K L
Sbjct: 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60
Query: 78 WRHYFQNTQGLIFVVDSNDR 97
Y+ Q I + D R
Sbjct: 61 RDGYYIQGQCAIIMFDVTAR 80
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 36.4 bits (84), Expect = 0.004
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN---VETVEYKNISFTVWDVGGQ--- 71
+++++G A GKT++L G PT+ N V+ + ++WD GQ
Sbjct: 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61
Query: 72 DKIRPLWRHYFQNTQ--GLIFVVDSNDRDRVVEAR 104
D++R L + +T L F VD+ D VE++
Sbjct: 62 DRLRSL---SYADTHVIMLCFSVDNPDSLENVESK 93
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.004
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 24/130 (18%)
Query: 18 MRILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEY---KNISF 63
++I+++G A+GKT+++ YK +G + F + N++
Sbjct: 1 IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIG--------LDFFSRRITLPGSLNVTL 52
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD--ELHRMLNEDELRDAVL 121
VWD+GGQ + Y Q + V D + D + + +NE+ +
Sbjct: 53 QVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKM 112
Query: 122 LVFANKQDLP 131
++ NK DL
Sbjct: 113 VLVGNKTDLE 122
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 189 | |||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 100.0 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 100.0 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 100.0 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 100.0 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 100.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 100.0 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.98 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.98 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.98 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.98 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.98 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.98 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.98 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.98 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.98 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.98 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.98 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.98 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.97 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.97 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.97 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.97 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.97 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.97 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.97 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.97 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.97 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.97 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.97 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.97 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.97 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.97 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.97 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.97 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.97 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.97 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.97 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.97 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.97 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.97 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.97 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.97 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.97 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.97 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.97 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.97 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.97 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.97 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.97 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.97 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.96 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.96 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.96 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.96 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.96 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.96 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.96 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.96 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.96 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.96 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.96 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.96 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.95 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.95 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.95 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.95 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.95 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.94 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.94 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.94 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.93 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.93 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.93 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.93 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.92 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.92 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.92 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.92 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.92 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.92 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.92 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.91 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.91 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.91 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.91 | |
| PTZ00099 | 176 | rab6; Provisional | 99.91 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.91 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.91 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.91 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.91 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.91 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.91 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.9 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.9 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.9 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.9 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.9 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.9 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.9 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.9 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.9 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.9 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.89 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.89 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.88 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.88 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.88 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.88 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.88 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.88 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.87 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.87 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.87 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.87 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.87 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.87 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.87 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.87 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.87 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.87 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.87 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.86 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.86 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.86 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.86 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.85 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.85 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.85 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.85 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.85 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.84 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.84 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.84 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.84 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.83 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.83 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.83 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.83 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.83 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.83 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.82 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.82 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.82 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.82 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.82 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.81 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.81 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.8 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.8 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.8 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.8 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.8 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.79 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.79 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.79 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.79 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.78 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.77 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.77 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.77 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.76 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.76 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.76 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.76 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.76 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.75 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.74 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.74 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.74 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.74 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.74 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.74 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.74 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.73 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.73 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.73 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.73 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.72 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.72 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.72 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.71 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.71 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.71 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.71 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.7 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.7 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.7 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.69 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.68 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.67 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.67 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.66 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.66 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.66 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.66 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.65 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.65 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.64 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.64 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.63 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.62 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.6 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.59 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.59 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.59 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.56 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.55 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.54 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.52 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.52 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.51 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.51 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.51 | |
| PRK13768 | 253 | GTPase; Provisional | 99.5 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.5 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.5 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.49 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.49 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.49 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.47 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.46 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.46 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.45 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.45 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.41 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.4 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.39 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.39 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.38 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.38 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.37 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.37 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.36 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.35 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.33 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.32 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.32 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.3 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.28 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.27 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.27 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.27 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.26 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.26 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.24 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.24 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.24 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.23 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.2 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.18 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.17 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.16 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.14 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.11 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.04 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.04 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.01 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 99.01 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.0 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.98 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.97 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.95 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.95 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.94 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 98.94 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.94 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.92 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.91 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 98.89 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.86 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.86 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 98.85 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.84 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.83 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.82 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.78 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.76 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.76 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.75 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.75 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.73 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.73 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.72 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.72 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.71 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.7 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.69 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.68 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.67 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.64 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.61 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.6 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.59 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.58 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.57 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.57 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.57 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.56 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.54 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.54 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.51 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.51 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.45 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.41 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.41 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.37 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.37 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.36 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.33 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.32 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.32 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.3 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.3 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.29 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.27 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.27 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.27 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.26 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.24 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.24 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.22 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.22 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.2 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.1 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.07 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.06 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.05 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.04 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.02 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.01 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.95 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.94 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.93 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.92 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.86 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.86 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.84 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.83 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.81 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 97.8 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.78 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.73 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.72 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.72 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.7 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.66 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.64 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.64 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.63 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.62 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.61 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.61 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.6 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.59 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.59 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 97.59 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.57 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.55 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.54 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 97.54 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.54 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.51 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.51 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.47 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.46 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.45 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.45 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.45 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.45 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.44 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.44 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.44 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.41 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.38 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 97.37 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.35 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.35 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.33 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.31 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.31 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.31 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.3 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.22 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 97.16 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 97.15 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.15 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.14 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.14 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.12 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.12 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.1 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.09 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.08 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.07 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.07 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.07 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.06 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.06 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.06 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 97.05 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.05 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 97.04 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.04 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.04 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.04 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 97.03 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.02 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.01 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.01 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.01 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 97.01 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.01 | |
| KOG4273 | 418 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 97.0 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 96.98 | |
| PRK05439 | 311 | pantothenate kinase; Provisional | 96.97 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 96.96 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 96.96 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 96.93 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 96.93 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 96.92 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 96.92 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 96.91 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 96.88 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 96.88 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 96.88 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 96.87 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 96.87 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 96.87 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 96.87 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 96.83 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 96.83 | |
| PRK06696 | 223 | uridine kinase; Validated | 96.83 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 96.82 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 96.82 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 96.82 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 96.81 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 96.81 |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=223.46 Aligned_cols=180 Identities=99% Similarity=1.470 Sum_probs=160.0
Q ss_pred CcchHHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhh
Q 029675 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (189)
||+.++.+..+....+.+||+++|.+++|||||++++..+.+..+.||++.++..++..++.+++||+||++.++.++..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 88778777776666778999999999999999999999888887889999888888888999999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+++++|++|+|||+++++++.....++..++......+.|+++++||+|+.+....+++...++........+.+++|||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999999988888877654468999999999999887778888888877665556777889999
Q ss_pred CCCCChHHHHHHHHHHHhhc
Q 029675 161 TSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~ 180 (189)
++|+|++++|+++.+++.++
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999998765
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=221.99 Aligned_cols=181 Identities=78% Similarity=1.275 Sum_probs=160.8
Q ss_pred CcchHHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhh
Q 029675 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (189)
||+++.++.++...++.+||+++|++|+|||||++++..+.+..+.||.+..+..+...++.+++|||||++.++..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 89889999999888889999999999999999999998888887788999888888888899999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+++.+|++|+|+|+++++++.....++..++......++|+++++||.|+.+....+++...++...+....+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999999888888876544457899999999999776666777777776656566678889999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
++|.|++++|+++.+.+.+++
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999888765
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=214.20 Aligned_cols=167 Identities=19% Similarity=0.339 Sum_probs=138.3
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEE----EEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
.+.|||+++|++|+|||+|+.||.++.|. .+..|+++++... +.+.+++++|||+||++|+++..+|++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 45699999999999999999999999998 5788999888543 346689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceE-EEEcccCCCCChHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY-IQSTCATSGEGLYE 168 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 168 (189)
+|||+++.+||.++..|+.++-+... .+.|.++||||||+.+.. .+....+..++...+.. |+|+||+++.||++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~---~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKR---VVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhhe---ecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999988866543 678999999999997542 12222222222223334 99999999999999
Q ss_pred HHHHHHHHHhhccccCc
Q 029675 169 GLDWLSNNIASKVSSLT 185 (189)
Q Consensus 169 ~~~~l~~~~~~~~~~~~ 185 (189)
.|..+...+.++.....
T Consensus 163 ~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLHV 179 (205)
T ss_pred HHHHHHHHHHHhcccCC
Confidence 99999999999876443
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=209.75 Aligned_cols=169 Identities=87% Similarity=1.368 Sum_probs=147.3
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
+.....+.+||+++|++|+|||||++++..+.+..+.||++..+..+..+.+.+++||+||++.++.++..+++++|++|
T Consensus 6 ~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 6 SKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 33344667999999999999999999998888777788999888878888899999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|||++++++++....++..++......+.|+++++||+|+.+....+++...++........+.++++||++|.|++++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 99999999999999999998887654467999999999999876667778777776656566778889999999999999
Q ss_pred HHHHHHHHh
Q 029675 170 LDWLSNNIA 178 (189)
Q Consensus 170 ~~~l~~~~~ 178 (189)
|++|.+.+.
T Consensus 166 ~~~l~~~~~ 174 (175)
T smart00177 166 LTWLSNNLK 174 (175)
T ss_pred HHHHHHHhc
Confidence 999988754
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=207.36 Aligned_cols=167 Identities=19% Similarity=0.346 Sum_probs=145.9
Q ss_pred hhccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE--EE--EcCEEEEEEEcCCCCCchhchhhhccCCC
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (189)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (189)
..+-+.+|++++|+.++||||||+||+.+.|. ++.+|+|+++.. +. ...+.+++|||+|||+|+.+.++|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 34456799999999999999999999999998 678999988843 33 35689999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCCh
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
++|+|||+++..+|+....|+.....+....+..+++||||.||.+. +++..+.+..-++..+..|+++||+.|.||
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 99999999999999999999999999887667899999999999887 566555555556666778999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 029675 167 YEGLDWLSNNIASKV 181 (189)
Q Consensus 167 ~~~~~~l~~~~~~~~ 181 (189)
+++|..+...+....
T Consensus 174 k~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 174 KQLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHHhccCcc
Confidence 999999888777664
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=208.45 Aligned_cols=162 Identities=75% Similarity=1.278 Sum_probs=142.4
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
.++.+||+++|++|+|||||++++..+.+..+.||.+..+..+....+.+++|||||+++++..+..+++++|++|+|||
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 45679999999999999999999998888777889888887777888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (189)
++++.++.+...++.+.+......+.|+++++||+|+.+....+++.+..+........+.++++||++|+|++++|++|
T Consensus 86 ~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 86 SADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 99999999999999888876444678999999999998766777887777665555556788999999999999999998
Q ss_pred HH
Q 029675 174 SN 175 (189)
Q Consensus 174 ~~ 175 (189)
.+
T Consensus 166 ~~ 167 (168)
T cd04149 166 SS 167 (168)
T ss_pred hc
Confidence 65
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=206.94 Aligned_cols=165 Identities=20% Similarity=0.369 Sum_probs=140.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc-cCCcCceEEEEE--Ec--CEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVE--YK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~~--~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
...+|++++|+.++|||||+-||..+.|.++ .||++..+.+.. .. .++|.||||+|+++|..+-+.|+|+++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4579999999999999999999999999975 899998886544 33 489999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|||+++.+||..++.|+..+..+.. +++-+.++|||+|+.+. +++..+.....++..+..|+|+||++|.||+++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~---R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLER---REVEFEEAQAYAESQGLLFFETSAKTGENVNEI 158 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhc---ccccHHHHHHHHHhcCCEEEEEecccccCHHHH
Confidence 99999999999999999999988765 77888999999999873 333333333344445667999999999999999
Q ss_pred HHHHHHHHhhcccc
Q 029675 170 LDWLSNNIASKVSS 183 (189)
Q Consensus 170 ~~~l~~~~~~~~~~ 183 (189)
|..|.+.+.+.-..
T Consensus 159 f~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 159 FQAIAEKLPCSDPQ 172 (200)
T ss_pred HHHHHHhccCcccc
Confidence 99999999877543
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=201.85 Aligned_cols=158 Identities=93% Similarity=1.436 Sum_probs=138.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
+||+++|.+++|||||++++..+.+..+.||++.....+....+.+.+||+||++++...+..+++++|++++|||++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999888888788899888877888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHH
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
.++.....++..++......+.|+++++||+|+.+....+++...++...+..+.+.++++||++|+|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999998888876544457899999999999766556676666666555556778889999999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=198.48 Aligned_cols=180 Identities=83% Similarity=1.314 Sum_probs=173.4
Q ss_pred CcchHHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhh
Q 029675 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (189)
||..++.++....+.++.+|+++|-.+|||||++++|-.+++.++.||++.++.++.++++.|++||.+|+++++..|..
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 89999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
|+++.+++|||+|.++++.+.++++.+..++.+....+.|+++.+||.|+.+..+..++...+++..+....+++..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999999987789999999999999999999999999999999889999999999
Q ss_pred CCCCChHHHHHHHHHHHhhc
Q 029675 161 TSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~ 180 (189)
.+|+|+.+.++++.+.+..+
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999988654
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=200.22 Aligned_cols=173 Identities=54% Similarity=1.000 Sum_probs=159.6
Q ss_pred HHHHHHhhhc-cCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhcc
Q 029675 5 FTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (189)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (189)
|+.+++.... .+.++|+++|..||||||+++++..+.+....||.+.+..++...+..+.+||.+|+..++..|..+++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 4566677665 788999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcccc-CcceEEEEcccCC
Q 029675 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATS 162 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 162 (189)
++|++|||+|.++.+.+.+....+..++......+.|+++++||+|+.+....+++...+.+..+. ...+.++.|||.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999999999999999999988777889999999999999888889999888877776 6788999999999
Q ss_pred CCChHHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNNI 177 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~ 177 (189)
|+|+.+.++||.+++
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=197.41 Aligned_cols=163 Identities=61% Similarity=1.055 Sum_probs=139.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (189)
||+++|.+++|||||++++.+..+..+.||.+..+..+.+.++.+++|||||+..++..+..+++.+|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999988877888998888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-cCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
++.....|+..++......+.|+++++||+|+.+....+++......... ....+.+++|||++|.||+++|+++.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999887654456899999999999876666666665543322 22346788999999999999999999887
Q ss_pred hhcc
Q 029675 178 ASKV 181 (189)
Q Consensus 178 ~~~~ 181 (189)
...-
T Consensus 161 ~~~~ 164 (169)
T cd04158 161 VAAG 164 (169)
T ss_pred hhcc
Confidence 6653
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=201.83 Aligned_cols=166 Identities=23% Similarity=0.402 Sum_probs=140.0
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (189)
..+-+||+++|++++|||+|+.+|..+.|. +...|+++++. ++.. ..+.+++|||+||++|+.+..+|++.|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 356699999999999999999999999998 45778887774 3444 447899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
++|||+++..+|+++..|+..+-.+. ....|.++||||+|+... +++..+.+...+...++.|+||||++|.||++
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 99999999999999999766665543 358999999999999763 44555555555555667899999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 029675 169 GLDWLSNNIASKVSS 183 (189)
Q Consensus 169 ~~~~l~~~~~~~~~~ 183 (189)
+|-.+++.+..+...
T Consensus 165 aF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 165 AFLSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHHHhhcch
Confidence 999999999977653
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=197.95 Aligned_cols=166 Identities=49% Similarity=0.891 Sum_probs=141.4
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
..-+..+.++|+++|++|+|||||++++.+..+....||.+.....+..++..+.+||+||++.++..+..+++.+|+++
T Consensus 7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 33445677999999999999999999999887777788888777778788899999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|||++++.++.....++..++......+.|+++++||+|+.+....+++...+.........+.++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 99999999999998888888876544468999999999999776566666666655434456678999999999999999
Q ss_pred HHHHHH
Q 029675 170 LDWLSN 175 (189)
Q Consensus 170 ~~~l~~ 175 (189)
|+++++
T Consensus 167 ~~~l~~ 172 (173)
T cd04154 167 IDWLVD 172 (173)
T ss_pred HHHHhc
Confidence 999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=193.58 Aligned_cols=163 Identities=24% Similarity=0.398 Sum_probs=141.5
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCC-cCceEE----EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t-~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||++||.+|+|||||+-+|..+.|....|+ +++++. .++...+++.||||+||++|+.+.++|++.+.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 459999999999999999999999999977664 776653 344466899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|||++.+++|.++..|+.++-.-...+++..++|+||.|..++ +.+....++.+++...+-|+||||++.+||+.+|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 9999999999999888877654444467888999999996543 6677788888888888999999999999999999
Q ss_pred HHHHHHHhhcc
Q 029675 171 DWLSNNIASKV 181 (189)
Q Consensus 171 ~~l~~~~~~~~ 181 (189)
+.++++|++--
T Consensus 167 eelveKIi~tp 177 (209)
T KOG0080|consen 167 EELVEKIIETP 177 (209)
T ss_pred HHHHHHHhcCc
Confidence 99999998764
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=197.06 Aligned_cols=170 Identities=54% Similarity=0.975 Sum_probs=145.9
Q ss_pred HHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCC
Q 029675 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (189)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (189)
.++.+.....+.++|+++|++|+|||||++++.++.+....||.+..+..+..++..+.+||+||++.+...+..+++.+
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 83 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNT 83 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcC
Confidence 44555444456799999999999999999999998888778888888888888899999999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
|++++|+|+++++++.....++..++......+.|+++++||+|+.+....+++.+.++........+.++++||++|.|
T Consensus 84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g 163 (174)
T cd04153 84 DAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEG 163 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCC
Confidence 99999999999989998888888887765456799999999999977656677777776555555667899999999999
Q ss_pred hHHHHHHHHH
Q 029675 166 LYEGLDWLSN 175 (189)
Q Consensus 166 i~~~~~~l~~ 175 (189)
+++++++|.+
T Consensus 164 i~e~~~~l~~ 173 (174)
T cd04153 164 LPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHhc
Confidence 9999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=204.06 Aligned_cols=160 Identities=21% Similarity=0.369 Sum_probs=126.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+.|+++|..|+|||||+++|..+.|.. +.+|++..+. .+..+ .+.+++|||+|+++|+.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 468999999999999999999999874 5677765543 44544 478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccC-cceEEEEcccCCCCChHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
|++++++|+.+..|+..+. .....+.|+++|+||+|+.+... +....+...++. .++.|++|||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~~---v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDRE---ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECcccccccc---cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHH
Confidence 9999999999988776543 33336799999999999964321 111111111111 135789999999999999999
Q ss_pred HHHHHHhhcc
Q 029675 172 WLSNNIASKV 181 (189)
Q Consensus 172 ~l~~~~~~~~ 181 (189)
++++.+.++.
T Consensus 157 ~l~~~~~~~~ 166 (202)
T cd04120 157 KLVDDILKKM 166 (202)
T ss_pred HHHHHHHHhC
Confidence 9999987764
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=184.46 Aligned_cols=181 Identities=45% Similarity=0.823 Sum_probs=167.1
Q ss_pred CcchHHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhh
Q 029675 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (189)
|| .++-+...-..+++++|+++|..|+||||++++|.+.......||.++...+..++.+.+++||.+||...+..|..
T Consensus 1 mg-~lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~n 79 (185)
T KOG0073|consen 1 MG-LLSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKN 79 (185)
T ss_pred Cc-HHHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHH
Confidence 56 45666666667789999999999999999999999999888999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-cCcceEEEEcc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTC 159 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 159 (189)
|+..+|++|+|+|++++..+++....+...+........|++++.||.|+......+++...+.+..+ +..++..+.||
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs 159 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCS 159 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEe
Confidence 99999999999999999999999999999988877788999999999999988899999998888777 77899999999
Q ss_pred cCCCCChHHHHHHHHHHHhhccc
Q 029675 160 ATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
+.+|+++.+.++|+.+.+.++.-
T Consensus 160 ~~tge~l~~gidWL~~~l~~r~~ 182 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMSRLF 182 (185)
T ss_pred ccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988653
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=200.37 Aligned_cols=165 Identities=21% Similarity=0.257 Sum_probs=129.4
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+.+||+++|.+|+|||||++++.++.+. .+.||.+..+. .+.. ..+.+++|||||+++++.++..+++.+|++++|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 3589999999999999999999999987 45677765443 3444 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
||++++++|..+..|+..+.......+.|+++|+||+|+.+... +....+....+..++.|++|||++|.||+++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~---v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ---VTTEEGRNLAREFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc---cCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHH
Confidence 99999999999988765554433335799999999999865321 111111122223456899999999999999999
Q ss_pred HHHHHHhhcccc
Q 029675 172 WLSNNIASKVSS 183 (189)
Q Consensus 172 ~l~~~~~~~~~~ 183 (189)
++++.+.++.+.
T Consensus 158 ~l~~~~~~~~~~ 169 (172)
T cd04141 158 GLVREIRRKESM 169 (172)
T ss_pred HHHHHHHHhccC
Confidence 999998876544
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=195.90 Aligned_cols=164 Identities=22% Similarity=0.373 Sum_probs=142.6
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc-cCCcCceE----EEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
...+|++++|+.|+|||+|+-+|....|... ..|+++++ .+++.+.+++++|||+|++.|++...+|++.+-++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 3469999999999999999999999998854 56777776 345567799999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|||+++.++|..+..|+.++.+... ++..+++++||+|+... +++.++.+..++++.++.|+++||++++||+|+
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 99999999999999999999987653 78999999999999765 456666666666666677999999999999999
Q ss_pred HHHHHHHHhhccc
Q 029675 170 LDWLSNNIASKVS 182 (189)
Q Consensus 170 ~~~l~~~~~~~~~ 182 (189)
|......++++..
T Consensus 160 F~nta~~Iy~~~q 172 (216)
T KOG0098|consen 160 FINTAKEIYRKIQ 172 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=203.62 Aligned_cols=163 Identities=18% Similarity=0.301 Sum_probs=131.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
+||+++|.+|+|||||+++|.++.+....+|++..+.......+.+.+|||+|++.+..++..+++++|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999988778888887766667778999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----------------CHhHHHhhhCCccccC-----------
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----------------NAAEITDKLGLHSLRQ----------- 150 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~~~~~----------- 150 (189)
++|+.+..||..+.... ..+.|+++|+||+|+.+.. ..+.+....+...++.
T Consensus 81 ~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 99999999988876542 3578999999999986510 0111111111111111
Q ss_pred ---cceEEEEcccCCCCChHHHHHHHHHHHhhcc
Q 029675 151 ---RHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 151 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
..+.|+||||++|.||+++|..+++.+....
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 1257999999999999999999999887654
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=199.99 Aligned_cols=160 Identities=17% Similarity=0.257 Sum_probs=129.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE--EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|..|+|||||+.+|.++.+.. +.++.+..+ ..+..+ .+.+++|||+|+++|+.++..+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 46999999999999999999999988764 345655544 334443 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+.+..|+.++.... ++.|+++|+||+|+.+. ...++... .++..++.|++|||++|.||++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~-----~a~~~~~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQA-----YAERNGMTFFEVSPLCNFNITE 157 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHH-----HHHHcCCEEEEecCCCCCCHHH
Confidence 999999999999998888875543 58999999999999643 22222222 1223445799999999999999
Q ss_pred HHHHHHHHHhhccc
Q 029675 169 GLDWLSNNIASKVS 182 (189)
Q Consensus 169 ~~~~l~~~~~~~~~ 182 (189)
+|+++++.+..+..
T Consensus 158 ~F~~l~~~i~~~~~ 171 (189)
T cd04121 158 SFTELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998887654
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=194.93 Aligned_cols=173 Identities=34% Similarity=0.597 Sum_probs=148.0
Q ss_pred hHHHHHHhh-hccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhc
Q 029675 4 TFTKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82 (189)
Q Consensus 4 ~~~~~~~~~-~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (189)
+|.++++-. ..++.++|+++|.+|+|||||++++.++.+....||.+.....+...+.++.+||+||+..++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 82 (184)
T smart00178 3 WFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYF 82 (184)
T ss_pred HHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence 566777743 2378899999999999999999999998877667787777777778889999999999999999999999
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcccc-------CcceEE
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYI 155 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 155 (189)
.++|++++|+|+++++++.....++..++......+.|+++++||+|+......+++...++..... .+.+.+
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence 9999999999999999999988888888765444689999999999998777788888877755432 246789
Q ss_pred EEcccCCCCChHHHHHHHHHH
Q 029675 156 QSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
++|||++|+|++++++++.++
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999875
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=201.96 Aligned_cols=164 Identities=20% Similarity=0.268 Sum_probs=126.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE---EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+.+||+++|+.++|||||+.+|..+.|. .+.||.+..+. .++...+.+++|||+|+++|+.++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4589999999999999999999999986 56788775543 2333457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHh--------hhCCccccCcc-eEEEEccc
Q 029675 92 VDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITD--------KLGLHSLRQRH-WYIQSTCA 160 (189)
Q Consensus 92 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~--------~~~~~~~~~~~-~~~~~~Sa 160 (189)
||++++++|+.+.. |...+... .++.|+++|+||+|+.+... .+.+.. ..+...++..+ +.|++|||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999975 44444332 25799999999999965422 111111 11111222233 57999999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
++|.||+++|.++++.+....
T Consensus 160 k~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999987754
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=190.28 Aligned_cols=157 Identities=66% Similarity=1.132 Sum_probs=134.3
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (189)
||+++|++++|||||++++..+.+..+.||.+..+..+.+.+..+++|||||++.++.++..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998888877788888888778888899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHH
Q 029675 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
++.....++...+......+.|+++++||+|+.+.....++...++.......++.++++||++|.|++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88877777777766544467999999999999766556667666655544455678999999999999999999864
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=199.45 Aligned_cols=163 Identities=15% Similarity=0.205 Sum_probs=126.5
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEE--EcCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
...+||+++|++|+|||||+++|..+.|. .+.||.+..+. .+. ...+.+++|||+|++.|..++..+++++|++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45789999999999999999999999987 45777765542 233 345789999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCccccCcce-EEEEcc
Q 029675 91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTC 159 (189)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (189)
|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+... ...+....+...++..++ .|+|||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999998 56665554432 5799999999999864210 011222223333344453 799999
Q ss_pred cCCCCC-hHHHHHHHHHHHhh
Q 029675 160 ATSGEG-LYEGLDWLSNNIAS 179 (189)
Q Consensus 160 a~~~~~-i~~~~~~l~~~~~~ 179 (189)
|++|.| |+++|+.+++.++.
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 161 ALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHhc
Confidence 999998 99999999987553
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=196.75 Aligned_cols=159 Identities=17% Similarity=0.222 Sum_probs=124.2
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++++|||||+.++..+.|. .+.||.+..+. .+.. ..+++++|||+|+++++.++..+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999987 46788865543 2222 45789999999999999999999999999999999
Q ss_pred CCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCccccCcce-EEEEcccCCCC
Q 029675 94 SNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRQRHW-YIQSTCATSGE 164 (189)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (189)
++++++|+.+ ..|+..+.... .+.|+++||||+|+.+... ...+....+...++..++ .|+||||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 46776664432 5799999999999964310 011222222222233344 58999999999
Q ss_pred ChHHHHHHHHHHHh
Q 029675 165 GLYEGLDWLSNNIA 178 (189)
Q Consensus 165 ~i~~~~~~l~~~~~ 178 (189)
||+++|+.+++.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=195.29 Aligned_cols=163 Identities=20% Similarity=0.377 Sum_probs=142.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEE----EEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
.+.|||+++|++++|||-|+.||..++|. +..+|+++.+.+. +.+.++.+||||+||++|+.+..+|++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 45699999999999999999999999988 6788999988663 346689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|||++...+|+++..|+.++..+.. +++++++||||+||.+. +.+..+.+..+++..+..|+++||.++.|++++
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999999999998887765 69999999999999763 444444455555556668999999999999999
Q ss_pred HHHHHHHHhhcc
Q 029675 170 LDWLSNNIASKV 181 (189)
Q Consensus 170 ~~~l~~~~~~~~ 181 (189)
|+.++..|++..
T Consensus 168 F~~~l~~I~~~v 179 (222)
T KOG0087|consen 168 FERVLTEIYKIV 179 (222)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
|
|
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=194.97 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=121.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++|+|||||+++|.++.|. .+.||++..+. .+..++ +.+++|||+|++++..++..+++++|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999999985 56788776554 344443 789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-H--------HHhhhCCccccCcc-eEEEEcccCCC
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-E--------ITDKLGLHSLRQRH-WYIQSTCATSG 163 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (189)
++++++|+.+..+|...+.... ++.|+++|+||+|+.+..... . +....+....+..+ +.|++|||++|
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 9999999999764444333322 579999999999986542111 1 11111111122223 57999999999
Q ss_pred CChHHHHHHHHHHH
Q 029675 164 EGLYEGLDWLSNNI 177 (189)
Q Consensus 164 ~~i~~~~~~l~~~~ 177 (189)
.|++++|+.+++++
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998864
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=197.28 Aligned_cols=164 Identities=17% Similarity=0.242 Sum_probs=130.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE---EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
+..+||+++|++|+|||||++++.++.+. .+.||.+..+. .++...+.+++|||||++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 56799999999999999999999998876 45677665543 233345688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+....|+..+.......+.|+++++||+|+.+.. ...+.... ....+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQEL-----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999888877665444588999999999986432 22222111 111234689999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 029675 169 GLDWLSNNIASKVSS 183 (189)
Q Consensus 169 ~~~~l~~~~~~~~~~ 183 (189)
+|+++++.+.+..+.
T Consensus 158 ~~~~l~~~l~~~~~~ 172 (189)
T PTZ00369 158 AFYELVREIRKYLKE 172 (189)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998877543
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=175.08 Aligned_cols=178 Identities=70% Similarity=1.204 Sum_probs=171.1
Q ss_pred CcchHHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhh
Q 029675 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (189)
||..++.++.+....++++|+++|-.++||||++.+|..+......||+++++.++.+++++|.+||.+|++..+..|..
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
|+....++|+|+|..+.+..+++++.+..++......+.|+++..||.|+.+...++++...+.+.-++...+.++.+++
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999887788999999999999999999999999998888889999999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q 029675 161 TSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~ 178 (189)
.+|.|+.+.+.|+.+.+.
T Consensus 161 ~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ccchhHHHHHHHHHhhcc
Confidence 999999999999988764
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=196.49 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=123.1
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEE--EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
++||+++|++|+|||||+++|.++.+. .+.||.+..+. .+. ...+.+++|||+|++.+..+++.+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 479999999999999999999999887 45677765542 233 34578999999999999999999999999999999
Q ss_pred ECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCccccCcce-EEEEcccC
Q 029675 93 DSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTCAT 161 (189)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (189)
|++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+... ...+....+...++..++ .|+||||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 56665554432 5799999999999864210 011222222333334454 78999999
Q ss_pred CCCC-hHHHHHHHHHHHh
Q 029675 162 SGEG-LYEGLDWLSNNIA 178 (189)
Q Consensus 162 ~~~~-i~~~~~~l~~~~~ 178 (189)
+|+| |+++|..+++..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998654
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=187.68 Aligned_cols=157 Identities=50% Similarity=0.859 Sum_probs=130.9
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCc-c-cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (189)
+|+++|++|+|||||+++|.+..+ . ...||.+.....+...++.+++|||||++.+...+..+++.+|++|+|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 3 56788887777777788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHH
Q 029675 97 RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
+.++.....++..+..... ..+.|+++++||+|+.+....+++...+.........+.++++||++|.|++++|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9889888888877765422 24799999999999987655666666655443333456789999999999999999986
Q ss_pred H
Q 029675 175 N 175 (189)
Q Consensus 175 ~ 175 (189)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=191.83 Aligned_cols=157 Identities=21% Similarity=0.348 Sum_probs=125.8
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEE--EEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++|+|||||++++.++.+.. ..+|.+..+.. +.. ..+.+.+|||||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 3799999999999999999999998874 45566655532 333 356899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||++++++|+.+..|+..+.... .++.|+++++||+|+.+.. ..++.... +...++.++++||++|+|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999887765432 2578999999999986542 22222221 1223457999999999999999
Q ss_pred HHHHHHHHhh
Q 029675 170 LDWLSNNIAS 179 (189)
Q Consensus 170 ~~~l~~~~~~ 179 (189)
|..+++.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988865
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=190.46 Aligned_cols=168 Identities=49% Similarity=0.856 Sum_probs=135.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEE-----cCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|++|+|||||++++.++.+....||.+........ ..+.+.+|||||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999998888777877766544433 45799999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-cCcceEEEEcccCCCCChHHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
|+|+++++++.....++..+.......+.|+++++||+|+.+....+++......... ....+.++++||++|+|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999998888888888777765444457999999999999765555555554443322 223467889999999999999
Q ss_pred HHHHHHHHhhcccc
Q 029675 170 LDWLSNNIASKVSS 183 (189)
Q Consensus 170 ~~~l~~~~~~~~~~ 183 (189)
++++.+.+.+..+.
T Consensus 162 ~~~l~~~l~~~~~~ 175 (183)
T cd04152 162 LEKLYEMILKRRKM 175 (183)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998766543
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=194.81 Aligned_cols=160 Identities=19% Similarity=0.397 Sum_probs=128.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEE--EEE------------cCEEEEEEEcCCCCCchhchhh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY------------KNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~------------~~~~~~i~D~~g~~~~~~~~~~ 80 (189)
+.+||+++|++|+|||||++++.++.+.. ..+|.+.++.. +.. ..+.+.+|||||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 46899999999999999999999988874 46677655532 222 2378999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQST 158 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
+++++|++++|||++++++|..+..|+..+.......+.|+++|+||+|+.+.. ..++.... ....++.++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKAL-----ADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHH-----HHHcCCeEEEE
Confidence 999999999999999999999999988877655444578999999999986532 22222111 11123468999
Q ss_pred ccCCCCChHHHHHHHHHHHhhc
Q 029675 159 CATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
||++|.|++++|+.+.+.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999988765
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=190.42 Aligned_cols=164 Identities=35% Similarity=0.651 Sum_probs=140.2
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
..+.++|+++|++|+|||||++++.++.+..+.||.+.....+...+..+.+||+||++.++..+..+++.+|++++|+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 35689999999999999999999999888777788887777888888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-----------cCcceEEEEcccCC
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-----------RQRHWYIQSTCATS 162 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 162 (189)
+++.+++.....++..++......+.|+++++||+|+......+++...++.... ....+.+++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999899888888888887655567999999999999876677777776654221 12346799999999
Q ss_pred CCChHHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNNI 177 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~ 177 (189)
|+|++++|+++.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=181.86 Aligned_cols=163 Identities=20% Similarity=0.393 Sum_probs=133.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEE---E-cCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE---Y-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~---~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+|++++|+..+|||||+.++.++.|. ....|.++++..-. . +.+++++|||+|+++++.....+++.++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 4579999999999999999999999987 45678777764322 2 44799999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
+||+++.++|.....|.-++ +...+.+.|+|+++||||+.++ +-+..+.+..++++.+..|+|+||+.+.||+++|
T Consensus 100 myDitNeeSf~svqdw~tqI-ktysw~naqvilvgnKCDmd~e---Rvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQI-KTYSWDNAQVILVGNKCDMDSE---RVISHERGRQLADQLGFEFFETSAKENINVKQVF 175 (193)
T ss_pred EEecCCHHHHHHHHHHHHHh-eeeeccCceEEEEecccCCccc---eeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence 99999999998888766554 5567789999999999999765 3333333333344445569999999999999999
Q ss_pred HHHHHHHhhccc
Q 029675 171 DWLSNNIASKVS 182 (189)
Q Consensus 171 ~~l~~~~~~~~~ 182 (189)
+.++..+-+++.
T Consensus 176 e~lv~~Ic~kms 187 (193)
T KOG0093|consen 176 ERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHHhh
Confidence 999999887764
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=187.66 Aligned_cols=155 Identities=40% Similarity=0.682 Sum_probs=132.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
.|+++|++|+|||||+++|.++.+. .+.||.+.....+...+.++.+||+||+++++.++..+++++|++++|||.+++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 3799999999999999999988766 567888887777888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-cCcceEEEEcccCC------CCChHHHH
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATS------GEGLYEGL 170 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~i~~~~ 170 (189)
.++.....|+..+.... +++|+++++||+|+.+....+++...+....+ +..++.+++|||++ ++||+++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 89999988888876543 58999999999999877666666655544434 45678899999988 99999999
Q ss_pred HHHHH
Q 029675 171 DWLSN 175 (189)
Q Consensus 171 ~~l~~ 175 (189)
+.++.
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98864
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=200.41 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=127.4
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE-EE--EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
..+||+++|++|+|||||+.+|.++.|. .+.||++..+.. +. ...+.+++|||+|++.|..++..+++++|++|+|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 4689999999999999999999999887 457787665532 22 3457899999999999999999999999999999
Q ss_pred EECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCccccCcce-EEEEccc
Q 029675 92 VDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTCA 160 (189)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (189)
||++++++|... ..|+..+.... ++.|+++|+||+|+.+... ...+....+...++..++ .|+||||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999985 56666555432 5789999999999864210 012222233333344555 6899999
Q ss_pred CCCC-ChHHHHHHHHHHHhhc
Q 029675 161 TSGE-GLYEGLDWLSNNIASK 180 (189)
Q Consensus 161 ~~~~-~i~~~~~~l~~~~~~~ 180 (189)
++|+ ||+++|..+++.+.++
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHh
Confidence 9998 8999999999988765
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=187.54 Aligned_cols=157 Identities=36% Similarity=0.615 Sum_probs=136.0
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (189)
+|+++|++|+|||||++++.+.....+.||.+.....+..++..+++||+||++.++.++..+++++|++++|||++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999874446788888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcccc---CcceEEEEcccCCC------CChHHH
Q 029675 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR---QRHWYIQSTCATSG------EGLYEG 169 (189)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~i~~~ 169 (189)
+++....++..+.......+.|+++++||+|+.+.....++.+.+....+. ...+.+++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999988876555689999999999998877777777776655442 23578889999998 899999
Q ss_pred HHHHHH
Q 029675 170 LDWLSN 175 (189)
Q Consensus 170 ~~~l~~ 175 (189)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999964
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=193.62 Aligned_cols=164 Identities=22% Similarity=0.332 Sum_probs=129.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEEc---CEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+||+++|++|+|||||+++|.++.+. .+.||.+.++. .+... .+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 68999999999999999999998876 45778775543 34433 57899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCccccCcceEEEEcccCCCCCh
Q 029675 92 VDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
||++++++|+.+..|+..+.... ...+.|+++|+||+|+.+ ....+++........ ...++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG----FIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC----CceEEEEeCCCCCCH
Confidence 99999999999988877654321 235789999999999963 333444333222111 136899999999999
Q ss_pred HHHHHHHHHHHhhccccCc
Q 029675 167 YEGLDWLSNNIASKVSSLT 185 (189)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~ 185 (189)
+++|+++++.+.+......
T Consensus 157 ~e~f~~l~~~l~~~~~~~~ 175 (201)
T cd04107 157 EEAMRFLVKNILANDKNLQ 175 (201)
T ss_pred HHHHHHHHHHHHHhchhhH
Confidence 9999999999988765443
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=181.02 Aligned_cols=165 Identities=23% Similarity=0.358 Sum_probs=141.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEE--EEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
.-+|++++|+.|+|||+|+++|+.+++.+ ..+|+++.+.. +++ +.++++||||+||++|++...+|++.+.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 45899999999999999999999999984 57788887743 333 56899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|||+++.++|..+..|+.....-. .+++-+++++||.|+.+. +++.-..+..+.+..++-+.|+|+++|+|++|+|
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGENVEEAF 163 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccccHHHHH
Confidence 999999999999999998775533 268889999999999876 5555555555566667789999999999999999
Q ss_pred HHHHHHHhhccccC
Q 029675 171 DWLSNNIASKVSSL 184 (189)
Q Consensus 171 ~~l~~~~~~~~~~~ 184 (189)
-...+.|+.+.++.
T Consensus 164 l~c~~tIl~kIE~G 177 (214)
T KOG0086|consen 164 LKCARTILNKIESG 177 (214)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987653
|
|
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=187.78 Aligned_cols=162 Identities=15% Similarity=0.292 Sum_probs=135.4
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE----EEEcCEEEEEEEcCCCCCchhchhhhccCCCEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (189)
++.-+||++.|++|+|||||+|++.+.+|. .+..|++.++.+ ++.+.+.+++|||+||++|+++...+++.+|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 355699999999999999999999999998 567899877754 333457899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCC---CCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCccccCcceEEEEc
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRQRHWYIQST 158 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
++|||++++++|+.+..|..+++.+..- ..-|+|++|||.|+.+... ...+.. ...+++|+|+
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~-------s~gnipyfEt 158 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK-------SKGNIPYFET 158 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH-------hcCCceeEEe
Confidence 9999999999999999999988876432 3479999999999965321 222222 2345689999
Q ss_pred ccCCCCChHHHHHHHHHHHhhccc
Q 029675 159 CATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
|||.+.||+++|+.+.+.+++...
T Consensus 159 SAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 159 SAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred cccccccHHHHHHHHHHHHHhccc
Confidence 999999999999999999887764
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=190.26 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=122.6
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE-EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.+||+++|++|+|||||++++.++.+.. +.||++..+ ..+..+ .+.+++|||||++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3799999999999999999999988764 456654322 334443 467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++|+....|+..+.......+.|+++++||+|+.+.. ..++... +. +..+.+++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQA-LA----RQWGCPFYETSAKSKINVDEVF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHH-HH----HHcCCeEEEecCCCCCCHHHHH
Confidence 999999999999988887765444679999999999986532 1111111 11 1122478999999999999999
Q ss_pred HHHHHHH
Q 029675 171 DWLSNNI 177 (189)
Q Consensus 171 ~~l~~~~ 177 (189)
+++.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998765
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=190.65 Aligned_cols=157 Identities=21% Similarity=0.304 Sum_probs=125.0
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE-EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
++||+++|.+|+|||||++++..+.+.. ..||++..+. .+... .+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999888764 4566654432 33333 567889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++.+|+.+..|+..+.......+.|+++++||+|+.+.. ...+... + .+..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-L----ARQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH-H----HHHhCCEEEEeeCCCCCCHHHHH
Confidence 999999999999988888765555689999999999996532 2222111 1 11123478999999999999999
Q ss_pred HHHHHHHh
Q 029675 171 DWLSNNIA 178 (189)
Q Consensus 171 ~~l~~~~~ 178 (189)
.++.+++.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=196.68 Aligned_cols=165 Identities=16% Similarity=0.215 Sum_probs=128.4
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
++||+|+|++|+|||||+++|.++.|. .+.||++..+. .+.. ..+.+.+|||+|++.|..+++.+++++|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 379999999999999999999999887 56788876653 2333 4578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhH--------HHhhhCCccccCcc-eEEEEcccCC
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAE--------ITDKLGLHSLRQRH-WYIQSTCATS 162 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (189)
|++++++|+.+..+|...+... .++.|+++|+||+|+.+... ..+ +....+...++..+ +.|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999976666554433 26799999999999965321 111 11222222233344 3799999999
Q ss_pred CCC-hHHHHHHHHHHHhhccc
Q 029675 163 GEG-LYEGLDWLSNNIASKVS 182 (189)
Q Consensus 163 ~~~-i~~~~~~l~~~~~~~~~ 182 (189)
+++ |+++|+.++...+.+..
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 885 99999999998877543
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=183.57 Aligned_cols=157 Identities=69% Similarity=1.199 Sum_probs=138.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (189)
||+++|.+|+|||||++++.+..+....+|.+.....+.+....+.+||+||++.+...+..+++.+|++++|||+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777888999888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHH
Q 029675 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
++.....++..+.......+.|+++++||+|+......+++.+.++........+.++++||++|.|++++|+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999988877655568999999999999877667777776665544445678999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=189.59 Aligned_cols=160 Identities=18% Similarity=0.283 Sum_probs=125.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|+.|+|||||+++|.++.+.. +.||.+.++. .+..+ .+.+++|||+|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999998874 6888887663 44444 478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
|++++++|..+..|+..+..... ...| ++|+||+|+..... .+.+. .......+..++.+++|||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999988887765422 3566 67899999964221 11111 1111222233467899999999999999
Q ss_pred HHHHHHHHhhc
Q 029675 170 LDWLSNNIASK 180 (189)
Q Consensus 170 ~~~l~~~~~~~ 180 (189)
|+++.+.+.+.
T Consensus 158 f~~l~~~l~~~ 168 (182)
T cd04128 158 FKIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999988764
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=185.74 Aligned_cols=156 Identities=22% Similarity=0.370 Sum_probs=126.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++..+.+. .+.+|.+..+..... ..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988766 457777766655443 4578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
|++++++++.+..|+..+.... .+.|+++++||+|+.+.....+... ......+.++++||++|+|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-----FHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999988888776543 3899999999999974332222211 11223457999999999999999999
Q ss_pred HHHHHhhc
Q 029675 173 LSNNIASK 180 (189)
Q Consensus 173 l~~~~~~~ 180 (189)
+++.+.+.
T Consensus 154 l~~~~~~~ 161 (166)
T cd00877 154 LARKLLGN 161 (166)
T ss_pred HHHHHHhc
Confidence 99998753
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=194.05 Aligned_cols=161 Identities=22% Similarity=0.338 Sum_probs=131.7
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCCCE
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (189)
.....+||+++|.+|+|||||++++..+.+. .+.+|.+..+..... ..+.+.+|||+|++++..++..+++++|+
T Consensus 9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 3466799999999999999999999988887 467888776654432 34799999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCCh
Q 029675 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
+|+|||++++++|..+..|+..+.... .+.|+++|+||+|+.+.. ..+++ . .....++.|++|||++|.|+
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-----~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-T-----FHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-H-----HHHhcCCEEEEcCCCCCCCH
Confidence 999999999999999998887776542 579999999999986432 22222 1 11224467899999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 029675 167 YEGLDWLSNNIASKV 181 (189)
Q Consensus 167 ~~~~~~l~~~~~~~~ 181 (189)
+++|.++++.+.+..
T Consensus 161 ~~~f~~l~~~~~~~~ 175 (219)
T PLN03071 161 EKPFLYLARKLAGDP 175 (219)
T ss_pred HHHHHHHHHHHHcCc
Confidence 999999999998664
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=183.77 Aligned_cols=157 Identities=48% Similarity=0.914 Sum_probs=132.2
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEc-CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
+|+++|++|+|||||+++|.++.+....||.+..+..+... ...+.+||+||++.+...+..+++.+|++++|+|..++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 58999999999999999999999887788888777666553 57999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-cCcceEEEEcccCCCCChHHHHHHHHH
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
.++.....++..++......+.|+++++||+|+......+++...+..... ...++++++|||++|+|++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 889999888888877654468999999999999766556677665543322 234567999999999999999998864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=181.37 Aligned_cols=161 Identities=22% Similarity=0.366 Sum_probs=137.8
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEE--EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
-|||+++|..|+|||+|+++|..+-|+ ....|+++++. +++ .+.++++||||+|+++|++...+|++.+|++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 489999999999999999999999887 67888887764 333 4568999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
||++...+|..+-+|+.++..-.. .+..-|+|+||.|+.+. +++.++.+..+.+.....|.|+||++.+|++.+|.
T Consensus 87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 999999999999999888765332 56778999999999876 66666666666666777899999999999999999
Q ss_pred HHHHHHhhcc
Q 029675 172 WLSNNIASKV 181 (189)
Q Consensus 172 ~l~~~~~~~~ 181 (189)
.+...+....
T Consensus 163 ~~a~rli~~a 172 (213)
T KOG0095|consen 163 DLACRLISEA 172 (213)
T ss_pred HHHHHHHHHH
Confidence 9988877654
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=193.62 Aligned_cols=163 Identities=23% Similarity=0.465 Sum_probs=130.5
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEE--EEE---cCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
.+||+++|++|+|||||+++|.++.+.. ..+|++.++.. +.. ..+.+++|||||++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999988774 45777665533 333 24789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+.+..|+..+.........|+++++||+|+.+.. ..++.. .+ .+..++.|+++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAE-KL----AKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHH-HH----HHHhCCEEEEEeCCCCCCHHH
Confidence 99999999999999998887765443568899999999986532 122221 11 122335799999999999999
Q ss_pred HHHHHHHHHhhccccC
Q 029675 169 GLDWLSNNIASKVSSL 184 (189)
Q Consensus 169 ~~~~l~~~~~~~~~~~ 184 (189)
+|+++++.+.++.+..
T Consensus 157 ~f~~l~~~~~~~~~~~ 172 (211)
T cd04111 157 AFELLTQEIYERIKRG 172 (211)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999998876544
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=192.74 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=125.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
||+++|.+|+|||||+++|.++.+.. +.+|.+..+. .+.. ..+.+++|||||++++...+..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999888864 4566654432 2333 335789999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
+++++|..+..|+..+..... ..+.|+++|+||+|+.+... ..+... .....++.++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA-----LARRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHH-----HHHHhCCEEEEecCCCCCCHHHHH
Confidence 999999999888877654322 25789999999999864321 222111 112233578999999999999999
Q ss_pred HHHHHHHhhccccCc
Q 029675 171 DWLSNNIASKVSSLT 185 (189)
Q Consensus 171 ~~l~~~~~~~~~~~~ 185 (189)
+++++.+..+.....
T Consensus 156 ~~l~~~l~~~~~~~~ 170 (190)
T cd04144 156 YTLVRALRQQRQGGQ 170 (190)
T ss_pred HHHHHHHHHhhcccC
Confidence 999999887765443
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=183.48 Aligned_cols=166 Identities=49% Similarity=0.838 Sum_probs=142.1
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
......+.++|+++|++|+|||||++++.+..+....+|.+.....+...+..+.+||+||+..+...+..+++.+|+++
T Consensus 7 ~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 7 KLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred HhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 33444568999999999999999999999988777788888888788888899999999999999888999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|+|+.+..++.....++............|+++++||+|+.+....+++.+.++........+.++++||++|+|++++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~ 166 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEG 166 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHH
Confidence 99999998888888888887776544457999999999999776667777777776655555667889999999999999
Q ss_pred HHHHHH
Q 029675 170 LDWLSN 175 (189)
Q Consensus 170 ~~~l~~ 175 (189)
++++.+
T Consensus 167 ~~~l~~ 172 (173)
T cd04155 167 MNWVCK 172 (173)
T ss_pred HHHHhc
Confidence 999975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=181.55 Aligned_cols=159 Identities=20% Similarity=0.367 Sum_probs=133.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
++.+++|++|+|||+|+-+|..+.|. ++..|+++++ .++++ ..++++||||+|+++|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 67789999999999999999999888 5677887766 34443 5689999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
|+++.+||.+...|++.+.... ...|-++||||+|+... .-+..+.+..++.+.++.+||+|+++++|++..|.-
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~R---rvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPER---RVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccc---eeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999999987764 47899999999998754 222333333344455667999999999999999999
Q ss_pred HHHHHhhcc
Q 029675 173 LSNNIASKV 181 (189)
Q Consensus 173 l~~~~~~~~ 181 (189)
|.++..+..
T Consensus 164 it~qvl~~k 172 (198)
T KOG0079|consen 164 ITKQVLQAK 172 (198)
T ss_pred HHHHHHHHH
Confidence 999887654
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=187.02 Aligned_cols=157 Identities=25% Similarity=0.410 Sum_probs=124.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||+++|.++.+. .+.||.+..+. .+.. ..+.+++|||||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999877 45677776543 3333 4578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCC----CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCCh
Q 029675 93 DSNDRDRVVEARDELHRMLNEDE----LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
|++++++++....|+..+..... ..+.|+++|+||+|+.+.. ..++..... ...++.++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 99999999999888877765432 2469999999999986321 222222211 112346899999999999
Q ss_pred HHHHHHHHHHHhh
Q 029675 167 YEGLDWLSNNIAS 179 (189)
Q Consensus 167 ~~~~~~l~~~~~~ 179 (189)
+++++++.+.+++
T Consensus 156 ~~l~~~l~~~l~~ 168 (168)
T cd04119 156 NEMFQTLFSSIVD 168 (168)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988763
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-32 Score=190.89 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=123.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
.||+++|++|+|||||+++|.++.+.. +.||.+..+. .+.. ..+.+++|||+|++.+..++..+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 489999999999999999999998874 5677665543 2223 34789999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH---------hhhCCccccCc-ceEEEEcccCC
Q 029675 94 SNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT---------DKLGLHSLRQR-HWYIQSTCATS 162 (189)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~Sa~~ 162 (189)
++++++|+.+.. |+..+... .++.|+++|+||+|+.+.....+.. ...+...+... .+.|++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998874 55555432 2579999999999997643222111 11111112122 25799999999
Q ss_pred CCChHHHHHHHHHHHhhcc
Q 029675 163 GEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~~~ 181 (189)
|.|++++|.++++.+....
T Consensus 159 ~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 159 NRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 9999999999999988654
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.9e-32 Score=186.03 Aligned_cols=156 Identities=19% Similarity=0.371 Sum_probs=123.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.++.+. .+.||.+..+. ++.. ....+++|||||++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999986 45677765543 3332 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++++.+..|+..+... ...+.|+++++||+|+.+.. ..++..+.. ...++.++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999998888776443 22478999999999996542 222222211 1123468999999999999999
Q ss_pred HHHHHHHhh
Q 029675 171 DWLSNNIAS 179 (189)
Q Consensus 171 ~~l~~~~~~ 179 (189)
+++++.+.+
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987754
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=186.00 Aligned_cols=159 Identities=22% Similarity=0.378 Sum_probs=126.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|++|+|||||++++.++.+.. +.+|.+..+. .+... .+.+++||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 35899999999999999999999998774 4677766543 33333 4689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+.+..|+..+... ...+.|+++++||+|+.+.. ..++..... ...++.++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999888776553 23578999999999997532 222222211 12234689999999999999
Q ss_pred HHHHHHHHHhhc
Q 029675 169 GLDWLSNNIASK 180 (189)
Q Consensus 169 ~~~~l~~~~~~~ 180 (189)
+|+++.+++..+
T Consensus 156 ~~~~i~~~~~~~ 167 (167)
T cd01867 156 AFFTLAKDIKKK 167 (167)
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=184.95 Aligned_cols=153 Identities=20% Similarity=0.352 Sum_probs=121.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.++.+. .+.+|.+.++. .+... .+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999887 45777776543 34444 368899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++|+.+..|+..+.... ..+.|+++++||.|+..... .++.... .+..++.|++|||++|.|++++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKL-----AKEYGMDFFETSACTNSNIKESF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999998887765432 24799999999999864421 1221111 11223568999999999999999
Q ss_pred HHHHHH
Q 029675 171 DWLSNN 176 (189)
Q Consensus 171 ~~l~~~ 176 (189)
.++.+.
T Consensus 155 ~~l~~~ 160 (161)
T cd04117 155 TRLTEL 160 (161)
T ss_pred HHHHhh
Confidence 999864
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-32 Score=189.01 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=118.5
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.+||+++|++|+|||||+.++.++.+. .+.||.+..+. .+.. ..+.+.+|||||++.+...+..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 379999999999999999999998886 45666654332 2333 4478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHh--------hhCCccccCcc-eEEEEcccCC
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITD--------KLGLHSLRQRH-WYIQSTCATS 162 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~--------~~~~~~~~~~~-~~~~~~Sa~~ 162 (189)
|++++++|+.+...|...+.... ++.|+++|+||+|+.+.. ..+.+.. ..+....+..+ +.|++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 99999999999754444333322 579999999999996431 1111111 11111111223 4789999999
Q ss_pred CCChHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNN 176 (189)
Q Consensus 163 ~~~i~~~~~~l~~~ 176 (189)
|+|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=185.86 Aligned_cols=160 Identities=23% Similarity=0.338 Sum_probs=124.2
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
||+++|++|+|||||++++.++.+. .+.||++..+. .+.. ..+.+++|||||++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999887 56788776653 2333 34689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (189)
+++++++.....|+..+.......+.|+++|+||.|+.+..... ..+..+.......+..++++||++|.|++++|+.+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYA-LMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccc-ccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999888877655433457899999999986432211 00100111111223468899999999999999999
Q ss_pred HHHHhh
Q 029675 174 SNNIAS 179 (189)
Q Consensus 174 ~~~~~~ 179 (189)
++.+.+
T Consensus 161 ~~~~~~ 166 (170)
T cd04108 161 AALTFE 166 (170)
T ss_pred HHHHHH
Confidence 988754
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=185.56 Aligned_cols=157 Identities=20% Similarity=0.295 Sum_probs=122.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE-EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++|+|||||++++.++.+.. ..+|....+ ..+.. ..+.+.+|||||++++..++..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999988764 345554332 22333 34788999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+++++++..+..|+..+.......+.|+++++||+|+.+.. ..+....... ..+..++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-----QWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-----HcCCEEEEeecCCCCCHHHHHH
Confidence 99999999998888777665444578999999999986532 2222221111 1224789999999999999999
Q ss_pred HHHHHHhh
Q 029675 172 WLSNNIAS 179 (189)
Q Consensus 172 ~l~~~~~~ 179 (189)
++++.+..
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987753
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=184.73 Aligned_cols=156 Identities=20% Similarity=0.289 Sum_probs=122.5
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE-EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.+||+++|++|+|||||+++|.++.+. ...||.+..+ ..+..+ .+.+.+|||||++++..++..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 379999999999999999999998876 4456665443 223333 357889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
|++++.+|+....|+..+.......+.|+++++||+|+.+.. ...+..... ...++.++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 999999999998888877765444689999999999986532 222222211 11234689999999999999999
Q ss_pred HHHHHH
Q 029675 172 WLSNNI 177 (189)
Q Consensus 172 ~l~~~~ 177 (189)
++++.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998754
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.1e-32 Score=185.77 Aligned_cols=156 Identities=18% Similarity=0.273 Sum_probs=121.5
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCc-eEEEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
++||+++|.+|+|||||++++.++.+.. ..+|.+. ....+... ...+++|||||++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4799999999999999999999998874 3455442 22233333 457889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++|.....|+..+.......+.|+++++||+|+.+.. ...+. ..+. ...++.++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEG-RALA----EEWGCPFMETSAKSKTMVNELF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHH-HHHH----HHhCCEEEEecCCCCCCHHHHH
Confidence 999999999999888877765444689999999999986432 11111 1111 1123468999999999999999
Q ss_pred HHHHHHH
Q 029675 171 DWLSNNI 177 (189)
Q Consensus 171 ~~l~~~~ 177 (189)
.++++.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=184.98 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=122.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.+||+++|++|+|||||++++.++.+.. ..+|.+..+. .... ..+.+++|||||++++..++..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888763 4555553332 2223 3467899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++|.....|+..+.......+.|+++++||+|+.... ..++.... ....++.++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL-----ARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH-----HHHcCCcEEEeeCCCCCCHHHHH
Confidence 999999999999988887765444678999999999986532 12222111 11223468999999999999999
Q ss_pred HHHHHHH
Q 029675 171 DWLSNNI 177 (189)
Q Consensus 171 ~~l~~~~ 177 (189)
+.+++.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998764
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-31 Score=188.95 Aligned_cols=160 Identities=21% Similarity=0.385 Sum_probs=128.4
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|++|+|||||+++|.+..+. .+.+|.+..+ ..+... .+.+.+||+||++.+...+..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 4689999999999999999999998876 4567777554 334333 3688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+.+..|+..+.... ...|+++++||+|+.+.. ..++..... ...++.++++||++|.||++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVEE 157 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHHH
Confidence 999999999999998888765532 578999999999987542 222222211 12235789999999999999
Q ss_pred HHHHHHHHHhhccc
Q 029675 169 GLDWLSNNIASKVS 182 (189)
Q Consensus 169 ~~~~l~~~~~~~~~ 182 (189)
+|+++.+.+.....
T Consensus 158 lf~~l~~~~~~~~~ 171 (199)
T cd04110 158 MFNCITELVLRAKK 171 (199)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887643
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=188.26 Aligned_cols=162 Identities=22% Similarity=0.360 Sum_probs=128.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||+++|.++.+.. +.+|.+..+. .+.. ..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998874 6777765443 3333 3468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++|..+..|+..+.... ..+.|+++++||+|+.+.. ..+.... + ....++.++++||++|.|++++|
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKS-F----CDSLNIPFFETSAKQSINVEEAF 154 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHH-H----HHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999877765432 2468999999999987432 2222211 1 11223468999999999999999
Q ss_pred HHHHHHHhhccccCc
Q 029675 171 DWLSNNIASKVSSLT 185 (189)
Q Consensus 171 ~~l~~~~~~~~~~~~ 185 (189)
+++++.+.++....+
T Consensus 155 ~~l~~~~~~~~~~~~ 169 (188)
T cd04125 155 ILLVKLIIKRLEEQE 169 (188)
T ss_pred HHHHHHHHHHhhcCc
Confidence 999999998765443
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=190.95 Aligned_cols=158 Identities=18% Similarity=0.277 Sum_probs=124.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE--EEEc---CEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+||+++|++|+|||||+++|.++.+. .+.||.+.++.. +... .+.+++|||||++.+...+..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999998887 457788766533 3332 47899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
||++++++|+.+..|+..+..... ..+.|+++|+||+|+.+.. ..++... + ....++.++++||++|+|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~-~----~~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHAR-F----AQANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHH-H----HHHcCCEEEEEECCCCCCHH
Confidence 999999999999887777655422 1357899999999996432 1122111 1 11223468899999999999
Q ss_pred HHHHHHHHHHhhc
Q 029675 168 EGLDWLSNNIASK 180 (189)
Q Consensus 168 ~~~~~l~~~~~~~ 180 (189)
++|+++++.+...
T Consensus 156 ~lf~~l~~~l~~~ 168 (215)
T cd04109 156 LLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=180.90 Aligned_cols=157 Identities=38% Similarity=0.731 Sum_probs=130.0
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCc-------ccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+|+++|++|+|||||++++.+... ....+|.+.....+.+++..+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999976432 1346788888888888899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcc--ccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|+.+++++.....++..+.......+.|+++++||+|+.+....+++...+.... .....+.++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99998888888888888887765556899999999999977665555555444322 2234568999999999999999
Q ss_pred HHHHHH
Q 029675 170 LDWLSN 175 (189)
Q Consensus 170 ~~~l~~ 175 (189)
++++.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999865
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=184.59 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=119.2
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE---EEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++|+|||||++++.++.+. .+.||.+..+.. .....+.+.+|||||++++..++..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999886 445666544422 22345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 94 SNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+++++++..+..|+..+.... ..++.|+++|+||+|+.+.. ..++.. ......++.|++|||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGA-----ACATEWNCAFMETSAKTNHNVQEL 156 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHH-----HHHHHhCCcEEEeecCCCCCHHHH
Confidence 999999999988876554321 22579999999999996522 122211 111223457899999999999999
Q ss_pred HHHHHHH
Q 029675 170 LDWLSNN 176 (189)
Q Consensus 170 ~~~l~~~ 176 (189)
|+++++.
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9998753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=183.49 Aligned_cols=157 Identities=21% Similarity=0.388 Sum_probs=124.1
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++|+|||||++++.++.+. .+.+|.+..+ ..+... .+.+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 379999999999999999999998876 4456666544 333333 46889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||++++++|..+..|+..+.... ..+.|+++++||+|+.... ..++..... ...++.++++||++|+|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999887765432 2578999999999986432 222222211 122457999999999999999
Q ss_pred HHHHHHHHhh
Q 029675 170 LDWLSNNIAS 179 (189)
Q Consensus 170 ~~~l~~~~~~ 179 (189)
|..+.+++.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998864
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=182.44 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=114.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccccc-CCcCceEEEEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~~-~t~~~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
+||+++|++|+|||||+.++..+.|.... |+.+.....+..++ +.+.+|||+|++.. .+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEEC
Confidence 58999999999999999999988877543 33333334455544 67999999999752 356789999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccC-cceEEEEcccCCCCChHHHHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGLDWL 173 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l 173 (189)
+++++|+.+..|+..+.......+.|+++++||+|+.... .+++....+....+. ..+.|++|||++|.||+++|..+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999988888766544678999999999984211 111222222112222 23679999999999999999998
Q ss_pred HHH
Q 029675 174 SNN 176 (189)
Q Consensus 174 ~~~ 176 (189)
++.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 865
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=189.77 Aligned_cols=162 Identities=20% Similarity=0.349 Sum_probs=129.5
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
...+||+++|++|+|||||+++|.++.+. .+.+|.+..+. .+..+ .+.+++||++|++++..++..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 45689999999999999999999998876 56777776653 34433 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
+|||++++++|+.+..|+..+.... ..+.|+++++||+|+.+.... .+....+. ...++.++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999988887765542 257999999999998653221 11222221 12346799999999999999
Q ss_pred HHHHHHHHHhhcc
Q 029675 169 GLDWLSNNIASKV 181 (189)
Q Consensus 169 ~~~~l~~~~~~~~ 181 (189)
+|+.+++.+.+..
T Consensus 165 lf~~l~~~i~~~~ 177 (216)
T PLN03110 165 AFQTILLEIYHII 177 (216)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
|
|
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-32 Score=177.86 Aligned_cols=166 Identities=21% Similarity=0.401 Sum_probs=140.8
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc-cCCcCceEEE----EE-EcCEEEEEEEcCCCCCchhchhhhccCCCEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VE-YKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~----~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (189)
...++++++|++-+|||||++.|..+++.+. .||.++++.. ++ +..+++++|||+||++|++...+|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 4678999999999999999999999999954 7899887742 22 2457999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
++|||+++.++|+....|+.+.......+. +-+.+||+|+|+... +++..+.+..+++..+..|+|||+++|.||+
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999988766544344 556889999999854 5566666666666777889999999999999
Q ss_pred HHHHHHHHHHhhcccc
Q 029675 168 EGLDWLSNNIASKVSS 183 (189)
Q Consensus 168 ~~~~~l~~~~~~~~~~ 183 (189)
+.|..+.+.+..++.+
T Consensus 163 EAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 163 EAFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887654
|
|
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-31 Score=186.35 Aligned_cols=159 Identities=18% Similarity=0.389 Sum_probs=125.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcCceEEE--EEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+||+++|++|+|||||++++.++.+. ...+|++..+.. +.. ..+.+++|||||++++...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 446676655432 333 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||++++++|+++..|+..+.... ..+.|+++++||+|+.... ..++..... ...++.|+++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999988877766532 2478999999999986432 222222211 112347899999999999999
Q ss_pred HHHHHHHHhhccc
Q 029675 170 LDWLSNNIASKVS 182 (189)
Q Consensus 170 ~~~l~~~~~~~~~ 182 (189)
|.++.+.+.....
T Consensus 155 ~~~l~~~~~~~~~ 167 (191)
T cd04112 155 FTAVAKELKHRKY 167 (191)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988753
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=180.84 Aligned_cols=155 Identities=21% Similarity=0.392 Sum_probs=123.7
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++|+|||||++++.++.+. ...||.+..+. .+...+ ..+++||+||++.+..++..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999998876 45677765543 344433 6799999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||+++++++..+..|+..+..... .+.|+++++||+|+.+.. ..++...... ..++.++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999999988877655432 368999999999986532 2222222221 12457899999999999999
Q ss_pred HHHHHHHH
Q 029675 170 LDWLSNNI 177 (189)
Q Consensus 170 ~~~l~~~~ 177 (189)
++.+++.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998875
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=177.42 Aligned_cols=155 Identities=17% Similarity=0.264 Sum_probs=121.0
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EE--EEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|.+|+|||||++++.++.+.. ..++.+.... .+ +...+.+.+|||||++.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988764 3445443332 22 234568899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
|++++.++.....|+..+.... ++.|+++++||+|+..... .+.. . .....+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~~-~~~~-~----~~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSVT-QKKF-N----FAEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhHH-HHHH-H----HHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999888877765432 4789999999999853211 1111 1 11122457889999999999999999
Q ss_pred HHHHHhhc
Q 029675 173 LSNNIASK 180 (189)
Q Consensus 173 l~~~~~~~ 180 (189)
+++.+.++
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99988765
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=174.56 Aligned_cols=157 Identities=36% Similarity=0.680 Sum_probs=133.9
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
.|+++|++|+|||||++++.+..+. .+.||.+..+..+..+.+.+.+||+||++.++..+..+++.+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence 3799999999999999999999877 567888888877877889999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHH
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
+++.....++..+.......+.|+++++||+|+.+.....++.............+.++++|+++|.|++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 81 TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 888888888888876554467899999999999776555556555554444445578899999999999999999865
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=181.68 Aligned_cols=154 Identities=26% Similarity=0.446 Sum_probs=125.6
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE--EEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
||+++|++++|||||+++|.++.+. .+.+|.+.+... +.. ..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999887 456777666544 333 45789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
++++++|..+..|+..+..... .+.|+++++||+|+.+ ....++..... +..+..|+++||+++.||.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988887766543 4699999999999876 22333322211 12235799999999999999999
Q ss_pred HHHHHHh
Q 029675 172 WLSNNIA 178 (189)
Q Consensus 172 ~l~~~~~ 178 (189)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=181.26 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=122.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEEE---cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||+++|.++.+. .+.+|.+..+. .+.. ..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999887 44566655543 2333 2468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCccccCcce-EEEEcccCCCC
Q 029675 93 DSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAM------NAAEITDKLGLHSLRQRHW-YIQSTCATSGE 164 (189)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (189)
|++++++|+.+.. |+..+... .++.|+++++||+|+.... ...+.... ....++ .++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV-----AKKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHH-----HHHcCCcEEEEccCCCCC
Confidence 9999999999875 44444322 2578999999999986532 11221111 111222 68999999999
Q ss_pred ChHHHHHHHHHHHhhcccc
Q 029675 165 GLYEGLDWLSNNIASKVSS 183 (189)
Q Consensus 165 ~i~~~~~~l~~~~~~~~~~ 183 (189)
|++++|+.+++.+......
T Consensus 154 ~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 154 NVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred CHHHHHHHHHHHHHhhhhh
Confidence 9999999999999887643
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=184.05 Aligned_cols=163 Identities=15% Similarity=0.255 Sum_probs=124.3
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc--ccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~--~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+||+++|++|+|||||+++|.++.+.. +.+|++..+. .+..+ .+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998863 6677765542 34443 46788999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
||++++.+|+....|+..+.... .+.|+++|+||+|+..... ...+............++.++++||++|.|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999888777665432 4789999999999864321 11111000011112233568899999999999999
Q ss_pred HHHHHHHhhccc
Q 029675 171 DWLSNNIASKVS 182 (189)
Q Consensus 171 ~~l~~~~~~~~~ 182 (189)
+.+.+.+.++..
T Consensus 159 ~~i~~~~~~~~~ 170 (193)
T cd04118 159 QKVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHHhcc
Confidence 999999877643
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=180.09 Aligned_cols=157 Identities=19% Similarity=0.319 Sum_probs=124.2
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE--EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
-+||+++|++|+|||||++++.++.+.. ..++.+... ..+.. ....+.+||+||++++..+...+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 4899999999999999999999988764 345555443 22333 346899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||++++.+++.+..|+..+.... .++.|+++++||.|+.+.. ..++..... ...++.++++||++++|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998887775543 2679999999999987432 223322221 123457899999999999999
Q ss_pred HHHHHHHHhh
Q 029675 170 LDWLSNNIAS 179 (189)
Q Consensus 170 ~~~l~~~~~~ 179 (189)
|.++.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998865
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=180.39 Aligned_cols=152 Identities=18% Similarity=0.349 Sum_probs=120.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE--EEE----cCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
+||+++|++|+|||||++++.++.+. ...+|.+.++.. +.. ..+.+++|||||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999998876 446777666533 332 35789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++++.+..|+..+.... .+.|+++++||+|+.... ..++..... +..+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999999988877765432 579999999999986532 222222211 11234689999999999999
Q ss_pred HHHHHHHH
Q 029675 169 GLDWLSNN 176 (189)
Q Consensus 169 ~~~~l~~~ 176 (189)
+++++.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=181.31 Aligned_cols=157 Identities=21% Similarity=0.400 Sum_probs=122.6
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEEc--CEEEEEEEcCCCCCch-hchhhhccCCCEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIR-PLWRHYFQNTQGLIF 90 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~ 90 (189)
.+||+++|++|+|||||++++.++.+. .+.++.+..+. .+..+ .+.+.+||++|+++++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 589999999999999999999998876 45666665443 33333 4789999999999887 568888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCccccCcceEEEEcccCC---CCCh
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS---GEGL 166 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i 166 (189)
|||++++++|+.+..|+..+.......+.|+++++||+|+..... ..+....+. ....+.|++|||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 999999999999998887776654446799999999999864322 111222221 12235789999999 8999
Q ss_pred HHHHHHHHHHH
Q 029675 167 YEGLDWLSNNI 177 (189)
Q Consensus 167 ~~~~~~l~~~~ 177 (189)
+++|..+++.+
T Consensus 158 ~~~f~~l~~~~ 168 (170)
T cd04115 158 EAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999998776
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=176.95 Aligned_cols=156 Identities=21% Similarity=0.362 Sum_probs=121.4
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCce--EEEEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
+.+||+++|++|+|||||++++.++.+.. ..+|.+.. ...+...+ ..+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999888774 34555433 34455544 688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.. ..++....... .....++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEK----NGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCcEEEEEECCCCCCHHH
Confidence 999999999999888888776532 2579999999999986542 22222211111 0113688999999999999
Q ss_pred HHHHHHHH
Q 029675 169 GLDWLSNN 176 (189)
Q Consensus 169 ~~~~l~~~ 176 (189)
+++++.+.
T Consensus 157 ~~~~l~~~ 164 (165)
T cd01864 157 AFLLMATE 164 (165)
T ss_pred HHHHHHHh
Confidence 99999875
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=183.12 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=123.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE--EEEEEcC--EEEEEEEcCCCCCchhc--------hhhhccC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPL--------WRHYFQN 84 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~--------~~~~~~~ 84 (189)
+||+++|.+|+|||||+++|.++.+.. +.||++... ..+..++ +.+++|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999998874 567765443 2333444 78899999997644211 2345789
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEccc
Q 029675 85 TQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+|++|+|||++++++|+.+..|+..+.... ...++|+++++||+|+.... ..++...... +..++.|++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcEEEecC
Confidence 999999999999999999988887776543 23679999999999996532 2222221111 113457899999
Q ss_pred CCCCChHHHHHHHHHHHhhccccCcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKVSSLTS 186 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~~~~~~ 186 (189)
++|.|++++|+.+++.+..+-+..++
T Consensus 157 k~g~~v~~lf~~i~~~~~~~~~~~~~ 182 (198)
T cd04142 157 KYNWHILLLFKELLISATTRGRSTHP 182 (198)
T ss_pred CCCCCHHHHHHHHHHHhhccCCCccH
Confidence 99999999999999999988776544
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=179.12 Aligned_cols=154 Identities=21% Similarity=0.370 Sum_probs=120.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.++.+. ...++.+..+. .+.. ....+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999998876 34555554443 2333 3468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|+++++++..+..|+..+.... .++.|+++++||+|+.... ..+++..... ..++.++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 9999999999988887664332 2689999999999986432 2223222221 122579999999999999999
Q ss_pred HHHHHHH
Q 029675 171 DWLSNNI 177 (189)
Q Consensus 171 ~~l~~~~ 177 (189)
+++++.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998763
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=180.04 Aligned_cols=158 Identities=17% Similarity=0.257 Sum_probs=124.2
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE-EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
++||+++|++|+|||||++++.++.+. .+.+|.+..+ ..+.. ..+.+++|||||++.+..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 479999999999999999999998876 4466665443 22333 3478899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcc-eEEEEcccCCCCChHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEG 169 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~ 169 (189)
|++++++++....|...+.......+.|+++++||.|+.+.. ..++.... .+..+ +.++++||+++.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSL-----SQQWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHH-----HHHcCCceEEEeeCCCCCCHHHH
Confidence 999999999998887777654434679999999999986532 11221111 11112 46899999999999999
Q ss_pred HHHHHHHHhh
Q 029675 170 LDWLSNNIAS 179 (189)
Q Consensus 170 ~~~l~~~~~~ 179 (189)
|+++++++..
T Consensus 156 f~~i~~~~~~ 165 (168)
T cd04177 156 FIDLVRQIIC 165 (168)
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=185.07 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=114.2
Q ss_pred CceEEEEcCCCCChHHHHH-hHhcCCc-----c-cccCCcCc-e-EE-----------EEEEcCEEEEEEEcCCCCCchh
Q 029675 17 EMRILMVGLDAAGKTTILY-KLKLGEI-----V-TTIPTIGF-N-VE-----------TVEYKNISFTVWDVGGQDKIRP 76 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~-~l~~~~~-----~-~~~~t~~~-~-~~-----------~~~~~~~~~~i~D~~g~~~~~~ 76 (189)
.+||+++|++|+|||||+. ++.++.+ . .+.||++. . +. .++...+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 5655433 2 34677742 1 11 2334568999999999975 3
Q ss_pred chhhhccCCCEEEEEEECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----------------HhHH
Q 029675 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN----------------AAEI 139 (189)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------------~~~~ 139 (189)
+...+++++|++|+|||++++++|+.+.. |+..+... . ++.|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~-~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF-C-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh-C-CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45668899999999999999999999975 55544332 2 5789999999999864210 1223
Q ss_pred HhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHH
Q 029675 140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
....+...++..++.|+||||++|+||+++|+.++++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 3333344444556789999999999999999998864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=185.55 Aligned_cols=162 Identities=22% Similarity=0.386 Sum_probs=127.4
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
...+||+++|++|+|||||+++|.+..+....++.+..+. .+..+ .+.+.+|||||++++..++..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4569999999999999999999999888777777776553 33333 4688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
|||++++++|..+..+|...+.. ....+.|+++|+||+|+..... .++.... ....++.|+++||+++.|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMAL-----AKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 99999999999998766554442 2224689999999999865422 1222111 11233568999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 029675 168 EGLDWLSNNIASKV 181 (189)
Q Consensus 168 ~~~~~l~~~~~~~~ 181 (189)
++|+++.+.+.+..
T Consensus 167 ~l~~~l~~~~~~~~ 180 (211)
T PLN03118 167 QCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987754
|
|
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=175.76 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=123.6
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcCceEE--EEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (189)
++.+||+++|.+|+|||||+++|.++.+. .+.||.+..+. .+...+ ..+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999999885 45777775542 344433 6889999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCccccCcceEEEEcccCCC
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (189)
++|||++++.+|+.+..|+..+... .+.|+++|+||+|+.+.. ..+++.+.++.. .++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence 9999999999999887777654322 479999999999986432 223443333321 2578999999
Q ss_pred CChHHHHHHHHHHHhh
Q 029675 164 EGLYEGLDWLSNNIAS 179 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~ 179 (189)
.|++++|+.+.+.+..
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999998764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-32 Score=180.26 Aligned_cols=164 Identities=20% Similarity=0.406 Sum_probs=139.3
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc-cCCcCceEEEEEE-------------cCEEEEEEEcCCCCCchhchhhhcc
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY-------------KNISFTVWDVGGQDKIRPLWRHYFQ 83 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~~~-------------~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (189)
+|.+.+|++|+|||||++++..++|... ..|.++++.+-+. ..+.+++|||+||++|+++..++++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 6788999999999999999999999854 6677777644221 2368999999999999999999999
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCC
Q 029675 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (189)
++=+++++||+++..||-+..+|+.++..+..-.++.+++++||+|+.+. +.+.+......+...+++|+|+||.+|
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~---R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ---RVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh---hhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 99999999999999999999999999988887788999999999999764 444444444444555667999999999
Q ss_pred CChHHHHHHHHHHHhhccccC
Q 029675 164 EGLYEGLDWLSNNIASKVSSL 184 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~~~~~~ 184 (189)
.||++..+.+++.+++++++.
T Consensus 167 ~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987643
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=181.11 Aligned_cols=150 Identities=23% Similarity=0.363 Sum_probs=123.3
Q ss_pred EcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 23 VGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 23 iG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
+|.+|+|||||++++.++.+. .+.||++..+..... ..+.+.+|||+|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999998887 467888776654332 457999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHH
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
++|..+..|+..+.... .+.|+++|+||+|+.... ..+.. ......++.|++|||++|+||+++|.++++.
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI------TFHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH------HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999988877776542 579999999999985432 22221 1122345689999999999999999999999
Q ss_pred Hhhc
Q 029675 177 IASK 180 (189)
Q Consensus 177 ~~~~ 180 (189)
+.+.
T Consensus 153 i~~~ 156 (200)
T smart00176 153 LIGD 156 (200)
T ss_pred HHhc
Confidence 9776
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=181.14 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=117.7
Q ss_pred EEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECC
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
|+++|++|+|||||+++|.++.+.. +.++....+. .+.. ..+.+.+|||||++.+..++..+++++|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999998874 4555544332 2333 3467999999999999999999999999999999999
Q ss_pred CcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHH--------HhhhCCccccCcc-eEEEEcccCCCC
Q 029675 96 DRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEI--------TDKLGLHSLRQRH-WYIQSTCATSGE 164 (189)
Q Consensus 96 ~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~--------~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (189)
++++|+.+.. |+..+... . ++.|+++++||+|+..... .+++ ....+....+..+ ..+++|||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF-C-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh-C-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999875 55544432 2 5899999999999865311 1111 1111111112223 378999999999
Q ss_pred ChHHHHHHHHHHHhh
Q 029675 165 GLYEGLDWLSNNIAS 179 (189)
Q Consensus 165 ~i~~~~~~l~~~~~~ 179 (189)
|++++|+.+++.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998764
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=177.86 Aligned_cols=157 Identities=21% Similarity=0.439 Sum_probs=124.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.+..+. ...++.+..+. .+...+ +.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 68999999999999999999988876 34566665443 344433 68999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|+.++++++.+..|+..+..... ++.|+++++||+|+.+.. ..+...... ...++.++++|+++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFA-----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999998887777655432 589999999999987532 223332221 1233568999999999999999
Q ss_pred HHHHHHHhhc
Q 029675 171 DWLSNNIASK 180 (189)
Q Consensus 171 ~~l~~~~~~~ 180 (189)
+.+.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999988654
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=184.86 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=125.3
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCc-eEEEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF-NVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~-~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|.+|+|||||+++|.++.+. .+.+|++. ....+... .+.+++|||+|++.+..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999998887 45666652 22334443 4788999999999999988888999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCC--------CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCccccCcceEEEEcccCCC
Q 029675 94 SNDRDRVVEARDELHRMLNED--------ELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (189)
++++++|+.+..|+..+.... ...+.|+++++||+|+.. ....+++....+.. ..+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----ENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----CCCEEEEEeCCCC
Confidence 999999999988888776431 225799999999999964 33445554443321 2457899999999
Q ss_pred CChHHHHHHHHHHHhh
Q 029675 164 EGLYEGLDWLSNNIAS 179 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~ 179 (189)
.|++++|+++...+..
T Consensus 157 ~gI~elf~~L~~~~~~ 172 (247)
T cd04143 157 SNLDEMFRALFSLAKL 172 (247)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999986643
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=176.13 Aligned_cols=159 Identities=14% Similarity=0.314 Sum_probs=123.5
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
...+||+++|++|+|||||++++.++.+.. ..++.+..+. .+.. ..+.+++||+||++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 346899999999999999999999988774 4667665542 3333 4568899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
+|||+++++++..+..|...+..... ..+.|+++++||+|+... ...+++.+..... ..+.++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----GDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC----CCCeEEEEECCCCCC
Confidence 99999999999999888776655321 246899999999998632 2333333222111 113688999999999
Q ss_pred hHHHHHHHHHHH
Q 029675 166 LYEGLDWLSNNI 177 (189)
Q Consensus 166 i~~~~~~l~~~~ 177 (189)
++++|+.+++.+
T Consensus 159 v~~~~~~~~~~~ 170 (170)
T cd04116 159 VAAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=177.82 Aligned_cols=155 Identities=20% Similarity=0.398 Sum_probs=124.6
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE--EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++|+|||||++++.++.+.. ..++.+..+ ..+.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999999875 667766443 23333 457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||+++++++.....|+..+..... ...|+++++||+|+.+.. ..++....... .++.++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADE-----NGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHH
Confidence 999999999999988887766543 679999999999987321 23333222111 1246899999999999999
Q ss_pred HHHHHHHH
Q 029675 170 LDWLSNNI 177 (189)
Q Consensus 170 ~~~l~~~~ 177 (189)
++++++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999875
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=165.74 Aligned_cols=166 Identities=34% Similarity=0.668 Sum_probs=155.9
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.-..+..+.++|-.++|||||+|....+.+.+ -.||.+++...++.+.+.+.+||.||+.+|+.+|..|++.+++++||
T Consensus 16 f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 16 FWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred HHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 34567999999999999999999999888775 48999999999999999999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+|+++++.++..+..+..++....+.++|++|.|||.|+.+......+...+++..+..+.+.++.+|+++..||+-+.+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~ 175 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLD 175 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHH
Confidence 99999999999999999999999889999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHh
Q 029675 172 WLSNNIA 178 (189)
Q Consensus 172 ~l~~~~~ 178 (189)
|++++-.
T Consensus 176 Wli~hsk 182 (186)
T KOG0075|consen 176 WLIEHSK 182 (186)
T ss_pred HHHHHhh
Confidence 9988754
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=173.25 Aligned_cols=168 Identities=20% Similarity=0.307 Sum_probs=134.6
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCccccc-CCcCceE--EE--EEEcCEEEEEEEcCCCCCchhchhhhccCCCEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~-~t~~~~~--~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (189)
+.-.||++++|...+|||||+=|++.++|.... .|..-.+ .. +......++||||+||++|..+-+.|++.++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 345799999999999999999999999987543 2222211 22 333557899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
++|||+++.++|+....|..++..-.. ..+-+++|+||.|+-.+ +.+..+.+...++.-+..|+++||+++.||.+
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGISE 165 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence 999999999999999999888766443 46889999999998654 44444444444445566799999999999999
Q ss_pred HHHHHHHHHhhccccCc
Q 029675 169 GLDWLSNNIASKVSSLT 185 (189)
Q Consensus 169 ~~~~l~~~~~~~~~~~~ 185 (189)
+|+.+...+.++..+.+
T Consensus 166 lFe~Lt~~MiE~~s~~q 182 (218)
T KOG0088|consen 166 LFESLTAKMIEHSSQRQ 182 (218)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 99999999988874433
|
|
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=175.96 Aligned_cols=153 Identities=20% Similarity=0.380 Sum_probs=121.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++++|||||++++.+..+. ...++.+.++ ..+..++ ..+++||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999998876 4466665544 3344433 67999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++|+.+..|+..+..... .+.|+++++||+|+.+.. ..++...... ..++.++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999988888765532 369999999999994322 2222222211 223578999999999999999
Q ss_pred HHHHHH
Q 029675 171 DWLSNN 176 (189)
Q Consensus 171 ~~l~~~ 176 (189)
+++.+.
T Consensus 155 ~~i~~~ 160 (161)
T cd01861 155 RKIASA 160 (161)
T ss_pred HHHHHh
Confidence 999875
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=178.08 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=118.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE-EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++|+|||||+++|.++.+.. +.++....+ ..+..+ .+.+.+|||||++.+...+..+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999998864 455554322 233343 4568899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH---------HHhhhCCccccCcc-eEEEEcccCCC
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE---------ITDKLGLHSLRQRH-WYIQSTCATSG 163 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (189)
+.++++|+.....|...+... .++.|+++++||+|+.+...... +....+....+..+ ..|++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998875555444433 36899999999999865321111 11111111111222 36899999999
Q ss_pred CChHHHHHHHHHHHh
Q 029675 164 EGLYEGLDWLSNNIA 178 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~ 178 (189)
.|++++|+.+++.++
T Consensus 160 ~gi~~~f~~~~~~~~ 174 (174)
T cd04135 160 KGLKTVFDEAILAIL 174 (174)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998763
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=183.35 Aligned_cols=160 Identities=19% Similarity=0.320 Sum_probs=126.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|++|+|||||+++|.+..+.. ..+|++..+. .+.. ..+.+.+|||+|++.+...+..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988763 4667665543 2333 34678999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+.+..|+..+.... ..+.|+++++||+|+.+.. ..++..... +..++.++++||+++.|+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999988877665432 2579999999999986532 222222221 12335799999999999999
Q ss_pred HHHHHHHHHhhcc
Q 029675 169 GLDWLSNNIASKV 181 (189)
Q Consensus 169 ~~~~l~~~~~~~~ 181 (189)
+|.++++.+.++.
T Consensus 159 ~f~~l~~~~~~~~ 171 (210)
T PLN03108 159 AFIKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=178.17 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=113.4
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc-cCCcCceE-EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+|++++|++|+|||||+.++.++.+... .+|....+ ..+..+ .+.+++|||||++.+...+..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 6899999999999999999998887754 44442211 223333 4688999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCccccCcc-eEEEEcccCC
Q 029675 94 SNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRH-WYIQSTCATS 162 (189)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (189)
++++++|+.+.. |+..+... .++.|+++++||+|+..... .+.+.........+..+ ..|+++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999998864 55444432 24799999999999864311 01111111111122223 3799999999
Q ss_pred CCChHHHHHHHH
Q 029675 163 GEGLYEGLDWLS 174 (189)
Q Consensus 163 ~~~i~~~~~~l~ 174 (189)
|.|++++|+.++
T Consensus 159 ~~~v~~lf~~~~ 170 (173)
T cd04130 159 QKNLKEVFDTAI 170 (173)
T ss_pred CCCHHHHHHHHH
Confidence 999999998875
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-30 Score=175.78 Aligned_cols=154 Identities=18% Similarity=0.289 Sum_probs=119.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcC--Ccc-cccCCcCceEE--EEEE---cCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~--~~~-~~~~t~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
+||+++|++|+|||||++++.++ .+. .+.+|.+.++. .+.. ....+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 454 55677765543 2322 3479999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+...... ....+. ...++.++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999998888877765542 4699999999999865432111 111111 11234688999999999999
Q ss_pred HHHHHHHHH
Q 029675 169 GLDWLSNNI 177 (189)
Q Consensus 169 ~~~~l~~~~ 177 (189)
+++.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998875
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=182.21 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=118.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcC--ceEEEEEE--cCEEEEEEEcCCCCCchhchhhhcc-CCCEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQ-NTQGLIF 90 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~ 90 (189)
+||+++|++|+|||||+++|.++.+. .+.++.+ ....++.. ....+.+|||||++ ......+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999888874 4455553 33334444 55789999999998 333455666 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|..+..|+..+.......+.|+++|+||+|+.+... .++.. .+ ....++.|+++||+++.||++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~----a~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR-AC----AVVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH-HH----HHHcCCeEEEecCCCCCCHHH
Confidence 999999999999988887776654446799999999999865421 12111 11 122345689999999999999
Q ss_pred HHHHHHHHHhhcc
Q 029675 169 GLDWLSNNIASKV 181 (189)
Q Consensus 169 ~~~~l~~~~~~~~ 181 (189)
+|+++++++..+.
T Consensus 154 l~~~l~~~~~~~~ 166 (221)
T cd04148 154 LLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987443
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=173.70 Aligned_cols=157 Identities=18% Similarity=0.313 Sum_probs=124.0
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEE---EEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++|+|||||++++.++.+.. ..++....+.. ++...+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999988763 34554433322 22245789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+.++.++.....|+..+.......+.|+++++||+|+... ....+..... ...+++++++||++|+|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999888887654468999999999998752 2222211111 11234689999999999999999
Q ss_pred HHHHHHhh
Q 029675 172 WLSNNIAS 179 (189)
Q Consensus 172 ~l~~~~~~ 179 (189)
.+.+++.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988764
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=172.47 Aligned_cols=161 Identities=15% Similarity=0.260 Sum_probs=123.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.++.+.. ..+|.+..+. .+.. ..+.+++||+||++.+...+..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999988763 3455554442 3333 3467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
|+++++++.....|...+..... ..+.|+++++||+|+.++ ...++........ ..+.++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----GNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc----CCceEEEEECCCCCCHH
Confidence 99999998888777665544322 247999999999999732 2233332222111 12478999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 029675 168 EGLDWLSNNIASKVS 182 (189)
Q Consensus 168 ~~~~~l~~~~~~~~~ 182 (189)
++++++.+.+.++..
T Consensus 157 ~l~~~i~~~~~~~~~ 171 (172)
T cd01862 157 QAFETIARKALEQEK 171 (172)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999888743
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=173.17 Aligned_cols=154 Identities=25% Similarity=0.431 Sum_probs=122.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.+..+.. ..++.+..+. .+.. ..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 689999999999999999999988763 5666665543 2333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
|+++++++.....|+..+.......+.|+++++||+|+.... ..++..... ...++.++++|+++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA-----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH-----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999988877766655444689999999999997332 333322221 12345799999999999999999
Q ss_pred HHHHH
Q 029675 172 WLSNN 176 (189)
Q Consensus 172 ~l~~~ 176 (189)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 98875
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=173.85 Aligned_cols=158 Identities=14% Similarity=0.203 Sum_probs=117.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceE-E--EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~-~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
+||+++|++|+|||||+++|.++.+....+++...+ . .+....+.+.+|||||++.+...+..++..+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999998875444332222 1 2223567899999999998888888888999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
+++++++.+..+|...+.... .+.|+++++||+|+.+.... +++..... . +. ....+++|||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN-E-FR-EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHH-H-Hh-cccEEEEeccccccCHHHHH
Confidence 999999998765555554333 47999999999999765432 11111100 0 00 01268899999999999999
Q ss_pred HHHHHHHhh
Q 029675 171 DWLSNNIAS 179 (189)
Q Consensus 171 ~~l~~~~~~ 179 (189)
+.+.+.+.+
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999988765
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-30 Score=176.11 Aligned_cols=155 Identities=15% Similarity=0.224 Sum_probs=114.7
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE-EEEEE--cCEEEEEEEcCCCCC-chhchhhhccCCCEEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~d 93 (189)
||+++|++|+|||||++++.++.+. .+.++....+ ..+.. ..+.+++||+||++. +......+++.+|++|+|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 6899999999999999999988876 3455553222 22333 446789999999985 34556778899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCC-CChHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG-EGLYEG 169 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~ 169 (189)
++++++|+.+..|+..+..... ..+.|+++|+||+|+.+.. ..++.... ....+..|+++||++| .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL-----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH-----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999887766554321 3579999999999985432 22222111 1112346899999999 599999
Q ss_pred HHHHHHHHh
Q 029675 170 LDWLSNNIA 178 (189)
Q Consensus 170 ~~~l~~~~~ 178 (189)
|..+++.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=171.03 Aligned_cols=160 Identities=19% Similarity=0.315 Sum_probs=117.9
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE-EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+.||+++|++|+|||||+++|.++.+.. +.||.+..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999998874 566665443 23433 3467899999999999998888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhh--------CCccccC-cceEEEEcccCC
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKL--------GLHSLRQ-RHWYIQSTCATS 162 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~~Sa~~ 162 (189)
|++++++|+.....|...+... ..+.|+++++||+|+.+.... +++.... +...... ....+++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999988865444444332 257899999999998653211 1111100 0000111 123789999999
Q ss_pred CCChHHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNNI 177 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~ 177 (189)
|.|++++|+++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=169.98 Aligned_cols=154 Identities=21% Similarity=0.354 Sum_probs=119.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE--EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.++.+.. ..++..... ..+.. ....+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999988763 344443333 23333 3457999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++++....|+..+..... .+.|+++++||+|+.... ..+++..... ..++.++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHH
Confidence 99999999998887776655433 378999999999987432 2233322221 123467899999999999999
Q ss_pred HHHHHHH
Q 029675 171 DWLSNNI 177 (189)
Q Consensus 171 ~~l~~~~ 177 (189)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998875
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-29 Score=160.60 Aligned_cols=180 Identities=56% Similarity=0.943 Sum_probs=165.4
Q ss_pred CcchHHHHHHhhhcc-CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchh
Q 029675 1 MGLTFTKLFSRLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (189)
||.-++.++..+... ++.+|+++|-.|+|||++..++.-++..++.||++++..++.+++.++++||..|+-..+..|+
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 455566667776666 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcc
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
.|+.+.|++|||+|.++.+.+.-....+..++.+..+....++++.||.|........++...+++..++.+.+.++++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999998888888899999988888899999999999988888899999999888888889999999
Q ss_pred cCCCCChHHHHHHHHHHHhhc
Q 029675 160 ATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~~ 180 (189)
|.+|+|++++++|+.+.+.++
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999988754
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-31 Score=167.55 Aligned_cols=157 Identities=18% Similarity=0.401 Sum_probs=128.8
Q ss_pred EEEcCCCCChHHHHHhHhcCCcc--cccCCcCceEEE----EEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 21 LMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 21 ~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
+++|++++|||+|+-|+-.+.|. ...+|.++++.. +....+++++|||+||++|++...+|++++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 46899999999999999888876 346788877643 444568999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
.+..||++.+.|+.++..- ......+.+++||||+.++ ++.+.+.+..++ +|+|+||++|.|++..
T Consensus 81 ankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i--------pfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI--------PFMETSAKTGFNVDLA 151 (192)
T ss_pred ccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHHHHCC--------CceeccccccccHhHH
Confidence 9999999999998877542 2246788999999999654 234445555544 6999999999999999
Q ss_pred HHHHHHHHhhccccCcc
Q 029675 170 LDWLSNNIASKVSSLTS 186 (189)
Q Consensus 170 ~~~l~~~~~~~~~~~~~ 186 (189)
|-.+.+.+.+..-..+|
T Consensus 152 f~~ia~~l~k~~~~~~~ 168 (192)
T KOG0083|consen 152 FLAIAEELKKLKMGAPP 168 (192)
T ss_pred HHHHHHHHHHhccCCCC
Confidence 99999999887644443
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=172.21 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=121.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccc-cCCcC-ceEEEEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
||+++|++|+|||||+++|.++.+... .+|.. .....+...+ +.+++||+||+..+..++..+++.+|++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999999887743 44443 3333444444 7899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+++++++....|+..+.......+.|+++++||+|+.+.. ......+.... ..+..++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL----DWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHh----hcCCcEEEecCCCCCCHHHHHH
Confidence 9999999998888877765544679999999999986531 12222211111 1224688999999999999999
Q ss_pred HHHHHHh
Q 029675 172 WLSNNIA 178 (189)
Q Consensus 172 ~l~~~~~ 178 (189)
++++.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998775
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=171.49 Aligned_cols=157 Identities=21% Similarity=0.288 Sum_probs=116.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE---EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++|+|||||+++|.++.+. ...++...... ......+.+++||+||++.+......+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999874 44454432221 222345789999999999988888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCccccCcce-EEEEcccCCCC
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--------ITDKLGLHSLRQRHW-YIQSTCATSGE 164 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (189)
++++.+|......|...+.... .+.|+++++||+|+.+...... +............+. .|+++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999888766555544432 4799999999999876542211 111111112222223 79999999999
Q ss_pred ChHHHHHHHHH
Q 029675 165 GLYEGLDWLSN 175 (189)
Q Consensus 165 ~i~~~~~~l~~ 175 (189)
|++++++++++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=171.83 Aligned_cols=163 Identities=20% Similarity=0.283 Sum_probs=128.0
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCce-EEEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
.||+++|++|+|||||++++.+..+.. ..||.... ...+... .+.+++||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999888764 55655433 3334443 3568999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+++..+++.+..++..+.......+.|+++++||+|+.... ..++..... ...++.++++||+++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999998888876544678999999999986432 222222111 11224688999999999999999
Q ss_pred HHHHHHhhccccCc
Q 029675 172 WLSNNIASKVSSLT 185 (189)
Q Consensus 172 ~l~~~~~~~~~~~~ 185 (189)
++.+.+.......+
T Consensus 157 ~l~~~~~~~~~~~~ 170 (180)
T cd04137 157 LLIEEIEKVENPLD 170 (180)
T ss_pred HHHHHHHHhcCCCC
Confidence 99999887654443
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-28 Score=170.05 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=123.4
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+.|++++|++|+|||||++++..+.+.. ..+|....+. .+.. ....+.+||++|++.+.......++++|++++||
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 3689999999999999999998777653 3455443332 2333 3467899999999988887777889999999999
Q ss_pred ECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-H------hHHHhhhCCccccCcc-eEEEEcccCCC
Q 029675 93 DSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN-A------AEITDKLGLHSLRQRH-WYIQSTCATSG 163 (189)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (189)
|++++++|..+.. |+..+.... ++.|+++|+||+|+.+... . ..+.........+..+ +.|++|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999875 444443322 5799999999999854211 0 0000001111111222 36899999999
Q ss_pred CChHHHHHHHHHHHhhccccCccCC
Q 029675 164 EGLYEGLDWLSNNIASKVSSLTSSE 188 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~~~~~~~~~~ 188 (189)
.|++++|+.+.+++..-.++.+.+.
T Consensus 159 ~~v~~~f~~l~~~~~~~~~~~~~~~ 183 (187)
T cd04129 159 EGVDDVFEAATRAALLVRKSEPGAG 183 (187)
T ss_pred CCHHHHHHHHHHHHhcccCcccccC
Confidence 9999999999999988888776654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=173.29 Aligned_cols=161 Identities=22% Similarity=0.312 Sum_probs=135.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE---EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+.+|++++|.+|+|||+|+.+|+++.|. .+.||++..+. .++.+...+.|+||+|++.+..+...+++++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 4689999999999999999999999998 56888875442 2334557889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
|+++++.||+.+..++.++.........|+++||||+|+.+. ..+..+.+...+....+.|+|+||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999966555567899999999999864 33333333333555666799999999999999999
Q ss_pred HHHHHHhh
Q 029675 172 WLSNNIAS 179 (189)
Q Consensus 172 ~l~~~~~~ 179 (189)
.+...+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99998887
|
|
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-28 Score=167.20 Aligned_cols=157 Identities=20% Similarity=0.354 Sum_probs=119.4
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..++|+++|++|+|||||++++.++.+. ...+|.+... ..+...+ +.+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999977765 3456655333 3344444 678999999999999998999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
|||+.+++++.....|+..+... ...+.|+++++||+|+.+..+. .+....+. ......++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence 99999988998887776554332 2246899999999998654321 12222221 112246889999999999999
Q ss_pred HHHHHHHH
Q 029675 170 LDWLSNNI 177 (189)
Q Consensus 170 ~~~l~~~~ 177 (189)
|+.+.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998765
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=158.11 Aligned_cols=162 Identities=19% Similarity=0.327 Sum_probs=135.3
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE----EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
+.-||-+++|+-|+|||+|+++|...+|. ..++|+++.+. ++....+++++|||+|+++|+....++++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 34589999999999999999999999988 56778887763 35557789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
+|||++.+.++..+..|+....... .++..+++++||.|+... ...++. ..+++.+++.|.++|+++|++++
T Consensus 89 mvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeea-----k~faeengl~fle~saktg~nve 162 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEA-----KEFAEENGLMFLEASAKTGQNVE 162 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHH-----HHHHhhcCeEEEEecccccCcHH
Confidence 9999999999999888887765543 378889999999998543 233333 33444566789999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 029675 168 EGLDWLSNNIASKVS 182 (189)
Q Consensus 168 ~~~~~l~~~~~~~~~ 182 (189)
+.|-...+++++...
T Consensus 163 dafle~akkiyqniq 177 (215)
T KOG0097|consen 163 DAFLETAKKIYQNIQ 177 (215)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999988764
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=162.03 Aligned_cols=151 Identities=23% Similarity=0.423 Sum_probs=121.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc-cCCcCceEEEEE--E--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVE--Y--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~~--~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++++|||||++++.+..+... .+|.+..+.... . ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988754 667666554433 3 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--CCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP--NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|+++++++.....|+..+..... ...|+++++||+|+. .....+++..... ..++.++++|++++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 99998899998887777666432 479999999999995 2223333333222 134579999999999999999
Q ss_pred HHHH
Q 029675 171 DWLS 174 (189)
Q Consensus 171 ~~l~ 174 (189)
+++.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9886
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-28 Score=165.16 Aligned_cols=154 Identities=21% Similarity=0.313 Sum_probs=120.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE-EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
||+++|++|+|||||++++.+..+.. ..++.+..+ ..+... .+.+++||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999887653 455544222 233333 47899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
++++++.....++..+.........|+++++||+|+.... ..+++..... ..++.++++|++++.|++++++.
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999988888776544589999999999987532 2222222211 11246899999999999999999
Q ss_pred HHHHH
Q 029675 173 LSNNI 177 (189)
Q Consensus 173 l~~~~ 177 (189)
+.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-27 Score=168.65 Aligned_cols=164 Identities=23% Similarity=0.365 Sum_probs=130.9
Q ss_pred hhccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCCC
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (189)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (189)
..+...+|++++|++|+|||||+++++.+.+. .+.+|.+..+..... +.+.+.+|||+|++.+...+..+++.++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34566799999999999999999999888776 567888877755443 4589999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCCh
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
++++|||+++..+|..+..|+..+.... .+.|+++++||+|+.+.....+... .....++.++++|+++|.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQIT-----FHRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999988877775432 5789999999999864322111111 11223457899999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 029675 167 YEGLDWLSNNIASKVS 182 (189)
Q Consensus 167 ~~~~~~l~~~~~~~~~ 182 (189)
+++|.++++.+..+..
T Consensus 157 ~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 157 EKPFLWLARRLTNDPN 172 (215)
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999999887643
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-28 Score=159.74 Aligned_cols=179 Identities=37% Similarity=0.707 Sum_probs=156.6
Q ss_pred cchHHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCc--------ccccCCcCceEEEEEEcCEEEEEEEcCCCCC
Q 029675 2 GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI--------VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (189)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~--------~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (189)
=+..+.+.+--.....+.++++|..++|||||+...-.... ..-.||.+.+..++......+.+||..|++.
T Consensus 2 ~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~ 81 (197)
T KOG0076|consen 2 FTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES 81 (197)
T ss_pred hhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH
Confidence 34556677767778889999999999999999987643321 2346799999999999999999999999999
Q ss_pred chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-ccccCcc
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-HSLRQRH 152 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~ 152 (189)
.+++|..|+..+|++|+++|+++++.|+.....+.....+....+.|+++.+||.|+.+..+..++...++. .....+.
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd 161 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRD 161 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCcc
Confidence 999999999999999999999999999999999999988888889999999999999999988898888773 3334567
Q ss_pred eEEEEcccCCCCChHHHHHHHHHHHhhc
Q 029675 153 WYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
+.|+.+||.+|+||++.+.|+++.+.++
T Consensus 162 ~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 162 NPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CccccchhhhcccHHHHHHHHHHHHhhc
Confidence 8899999999999999999999999887
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=162.99 Aligned_cols=116 Identities=25% Similarity=0.434 Sum_probs=97.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEE-------cCEEEEEEEcCCCCCchhchhhhccCCCE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY-------KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~-------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (189)
+||+++|++++|||||++++.++.+. .+.+|++..+. .+.. ..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999887 45678775442 2332 34789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCC------------------CCCCCeEEEEEeCCCCCCC
Q 029675 88 LIFVVDSNDRDRVVEARDELHRMLNED------------------ELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~D~~~~ 133 (189)
+|+|||++++++|+.+..|+..+.... ...+.|+++|+||+|+.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999988876531 1246899999999999654
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-27 Score=163.67 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=131.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE---EEEE-EcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV---ETVE-YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~---~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
...+|++++|+..+|||+|+..+..+.|+ .+.||.-.++ ..+. ...+++.+|||+||++|.+.++..+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35689999999999999999999999988 5677765444 2342 55689999999999999999989999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHh--------hhCCccccCcc-eEEEEcc
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITD--------KLGLHSLRQRH-WYIQSTC 159 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~--------~~~~~~~~~~~-~~~~~~S 159 (189)
+||++.++++|.+....|..-+.+.. ++.|+++||+|.|+++.. ..+++.. ..+...++..+ ..|+|||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999998877776666555 899999999999998542 1112211 11111122233 5799999
Q ss_pred cCCCCChHHHHHHHHHHHhhcc
Q 029675 160 ATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~~~ 181 (189)
|++.+|++++|+..+..++...
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhccc
Confidence 9999999999999999987754
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=154.96 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=107.1
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccc---cCCcCceEEEEEEcCEEEEEEEcCCCCCch---------hchhhhccCCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQNTQ 86 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~~d 86 (189)
+|+++|++|+|||||+++|.+..+... ..|.+.....+..++..+++|||||+.... .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 789999999999999999999876421 235556555666677899999999974211 11111123368
Q ss_pred EEEEEEECCCcccH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCC
Q 029675 87 GLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (189)
Q Consensus 87 ~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (189)
++++|+|+++..++ .....|+..+.... .+.|+++++||+|+.+.....+.... .....+.+++|||++|.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEEE-----EELEGEEVLKISTLTEE 154 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHHh-----hhhccCceEEEEecccC
Confidence 99999999876653 45455555543321 47999999999999765333321111 12234578999999999
Q ss_pred ChHHHHHHHHHHHh
Q 029675 165 GLYEGLDWLSNNIA 178 (189)
Q Consensus 165 ~i~~~~~~l~~~~~ 178 (189)
|++++++++.+.++
T Consensus 155 gi~~l~~~l~~~~~ 168 (168)
T cd01897 155 GVDEVKNKACELLL 168 (168)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999988763
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=154.27 Aligned_cols=155 Identities=26% Similarity=0.247 Sum_probs=107.2
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-c--ccCCcCceEEEEEEcCE-EEEEEEcCCCC----Cchhchhhh---ccCCCE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQD----KIRPLWRHY---FQNTQG 87 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~i~D~~g~~----~~~~~~~~~---~~~~d~ 87 (189)
+|+++|.+|+|||||+++|.+.... . ..+|.......+...+. .+.+|||||.. ..+.+...+ +..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999876542 1 12344444444555555 99999999963 222233333 346999
Q ss_pred EEEEEECCCc-ccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 88 LIFVVDSNDR-DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 88 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
+++|+|++++ ++++....|...+.... ...++|+++|+||+|+.+.....+........ .....++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE---LWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh---CCCCCEEEEecCCCCC
Confidence 9999999988 78887776666554332 12468999999999987654433322222111 0234688999999999
Q ss_pred hHHHHHHHHHH
Q 029675 166 LYEGLDWLSNN 176 (189)
Q Consensus 166 i~~~~~~l~~~ 176 (189)
++++++++.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998865
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-25 Score=142.85 Aligned_cols=165 Identities=47% Similarity=0.793 Sum_probs=152.0
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcC-EEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+++++||++.|-.++|||||+..|.+.......||.+++...+...+ ..+++||.+|+...+..|..|+.+.|++|||
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 448899999999999999999999999888888999999999999866 8999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+|.++...|+++-+.+.+++...+....|+.+..||.|+......+++.....+..++.+-+++.+||+.+++|+..-.+
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~ 172 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSD 172 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcch
Confidence 99999999999999999999988888999999999999987777888888888888888889999999999999999999
Q ss_pred HHHHHH
Q 029675 172 WLSNNI 177 (189)
Q Consensus 172 ~l~~~~ 177 (189)
++....
T Consensus 173 wv~sn~ 178 (185)
T KOG0074|consen 173 WVQSNP 178 (185)
T ss_pred hhhcCC
Confidence 887643
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-25 Score=153.59 Aligned_cols=149 Identities=18% Similarity=0.216 Sum_probs=106.1
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC-------cc-cccC------CcCceE----EEE-----EEcCEEEEEEEcCCCCCch
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE-------IV-TTIP------TIGFNV----ETV-----EYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~-------~~-~~~~------t~~~~~----~~~-----~~~~~~~~i~D~~g~~~~~ 75 (189)
+|+++|++++|||||+++|.+.. +. .+.+ +.+..+ ..+ +..++.+++|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 78999999999999999998742 11 1111 112222 112 2346789999999999999
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCccccCcc
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRH 152 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 152 (189)
..+..+++.+|++|+|+|+++..++.....+.. ... .++|+++++||+|+.+.... +++.+.++.. .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 999999999999999999988666555444432 222 46889999999998653221 2333333221 1
Q ss_pred eEEEEcccCCCCChHHHHHHHHHHH
Q 029675 153 WYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
..++++||++|+|++++++++.+.+
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2478999999999999999998765
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-25 Score=151.06 Aligned_cols=151 Identities=23% Similarity=0.171 Sum_probs=102.7
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC---ccc-c--cCCcCceEEEEEEc-CEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE---IVT-T--IPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~---~~~-~--~~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.|+++|++|+|||||+++|.+.. +.. . ..|.+..+..+... +..+++|||||++++......+++.+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68999999999999999998643 221 1 23444555555555 77999999999998887777788899999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
+|+++... ......+. .+... ...|+++++||+|+.+... .+++.+.+..... ....++++||+++.|++
T Consensus 82 ~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 82 VAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFL--ADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCc--CCCcEEEEeCCCCcCHH
Confidence 99976211 11112121 11111 2348999999999975421 1223333222111 23578999999999999
Q ss_pred HHHHHHHH
Q 029675 168 EGLDWLSN 175 (189)
Q Consensus 168 ~~~~~l~~ 175 (189)
++++.+.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998754
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=162.31 Aligned_cols=124 Identities=21% Similarity=0.379 Sum_probs=104.0
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEE---------------cCEEEEEEEcCCC
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY---------------KNISFTVWDVGGQ 71 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~---------------~~~~~~i~D~~g~ 71 (189)
+..++...+||+++|+.|+|||||+++|.++.+. .+.+|++..+ ..+.+ ..+.++||||+|+
T Consensus 14 ~~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 14 NGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred ccCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 3567788899999999999999999999999887 4577887655 23333 2467999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCCCCC
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~ 133 (189)
+.|+.++..+++++|++|+|||++++++|+.+..|+..+..... ..+.|+++|+||+|+.+.
T Consensus 94 ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 94 ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 99999999999999999999999999999999998888765421 135899999999998643
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=154.21 Aligned_cols=153 Identities=21% Similarity=0.214 Sum_probs=107.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-c--ccCCcCceEEEEEEcCE-EEEEEEcCCCCCc---------hhchhhh
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQDKI---------RPLWRHY 81 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~i~D~~g~~~~---------~~~~~~~ 81 (189)
+..++|+++|++|+|||||++++.+..+. . ..+|.+.....+...+. .+.+|||||.... .... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 44589999999999999999999988643 1 23455555555555443 8999999997321 1111 23
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccC
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
+..+|++++|+|++++.++.....+. ..+......+.|+++|+||+|+.+..... . ........++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~-~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~-----~~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVE-KVLKELGAEDIPMILVLNKIDLLDDEELE---E-----RLEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHH-HHHHHcCcCCCCEEEEEEccccCChHHHH---H-----HhhcCCCceEEEEcC
Confidence 56899999999999887776654433 33333233578999999999997653222 1 112233468899999
Q ss_pred CCCChHHHHHHHHHHH
Q 029675 162 SGEGLYEGLDWLSNNI 177 (189)
Q Consensus 162 ~~~~i~~~~~~l~~~~ 177 (189)
++.|++++++++.+.+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999988754
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=148.51 Aligned_cols=154 Identities=22% Similarity=0.206 Sum_probs=108.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccc---cCCcCceEEEEEEc---CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.|+++|.+|+|||||+++|.++.+... ..|.......+... +..+.+|||||++.+..++..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998876643 22333333444443 678999999999999988888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh---hCCcc--ccCcceEEEEcccCCCCChH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK---LGLHS--LRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~Sa~~~~~i~ 167 (189)
|+++....+. ...+.. +.. .+.|+++++||+|+.... .+.+... ..... .....+.++++|+++|+|++
T Consensus 82 d~~~~~~~~~-~~~~~~-~~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQT-IEAIKL-AKA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHH-HHHHHH-HHH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 9987432221 111222 222 468999999999987432 1222211 11111 11234678999999999999
Q ss_pred HHHHHHHHHHh
Q 029675 168 EGLDWLSNNIA 178 (189)
Q Consensus 168 ~~~~~l~~~~~ 178 (189)
++++++.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999987654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=143.97 Aligned_cols=153 Identities=22% Similarity=0.295 Sum_probs=114.4
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE--EEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|.+|+|||||++++.+..+. ...+++...+.. +..++ +.+.+||+||+..+...+..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999999998855 344555555443 55566 7899999999999999999999999999999
Q ss_pred EECCCc-ccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDR-DRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|+... .++.... .+...+..... .+.|+++++||+|+......+.....+... ....++++||++|.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL----NGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc----cCCceEEeecCCCCCHHHH
Confidence 998866 6666655 34433333222 378999999999997654333333333322 1235889999999999999
Q ss_pred HHHHH
Q 029675 170 LDWLS 174 (189)
Q Consensus 170 ~~~l~ 174 (189)
++++.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 98863
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=166.74 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=111.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCC----------Cchhch-hh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD----------KIRPLW-RH 80 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~-~~ 80 (189)
..++|+++|.+|+|||||+|+|++..+. +..+ |.+.....+...+..+.+|||||.. .+..+. ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4589999999999999999999988753 3333 3333344566677889999999953 222221 23
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+++.+|++++|+|+++..+++... ++..+.. .+.|+++|+||+|+.+......+.............++++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 568999999999999887776653 3333332 57899999999999754322222222211111112246789999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
++|.|++++|+.+.+.+.+..
T Consensus 365 k~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 365 KTGRAVDKLVPALETALESWD 385 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999988765443
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=159.53 Aligned_cols=159 Identities=15% Similarity=0.205 Sum_probs=111.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc----cCCcCceEEEEEEcCEEEEEEEcCCCCC-chhch-------hhhc
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDK-IRPLW-------RHYF 82 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------~~~~ 82 (189)
.+.++|+++|.+|+|||||+|+|.+..+... .+|.+.....+..++..+.+|||||... +..+. ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4567999999999999999999999887532 2344444455667788999999999843 22221 1246
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
..+|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...++....... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 78999999999754 455554444444443 34677889999998653 233343333211 1124688999999
Q ss_pred CCChHHHHHHHHHHHhhccc
Q 029675 163 GEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~~~~ 182 (189)
|.|++++++++.+.+.+.-.
T Consensus 201 g~gv~eL~~~L~~~l~~~~~ 220 (339)
T PRK15494 201 GKNIDGLLEYITSKAKISPW 220 (339)
T ss_pred ccCHHHHHHHHHHhCCCCCC
Confidence 99999999999988766543
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=154.81 Aligned_cols=161 Identities=23% Similarity=0.307 Sum_probs=104.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEEEEEcCEEEEEEEcCC-----------CCCchhchhhh
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHY 81 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 81 (189)
+...++|+++|.+|+|||||+++|.+..+.. ..|+.......+... .+.+||||| ++.++..+..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 3457899999999999999999999887652 344444433334333 699999999 45555555555
Q ss_pred cc----CCCEEEEEEECCCcccH----H-----HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCc
Q 029675 82 FQ----NTQGLIFVVDSNDRDRV----V-----EARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH 146 (189)
Q Consensus 82 ~~----~~d~~i~v~d~~~~~s~----~-----~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~ 146 (189)
+. .++++++|+|......+ . .....+...+.. .++|+++++||+|+.+.. ..+++.+.++..
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 43 46788888887643211 0 011122223222 478999999999986543 233444444431
Q ss_pred -cccCcceEEEEcccCCCCChHHHHHHHHHHHhhc
Q 029675 147 -SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 147 -~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
.....+..++++||++| |++++++++.+.+.+.
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 01111235789999999 9999999999886543
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=145.72 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=92.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCC-----CchhchhhhccCCCEEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~i~v~d 93 (189)
||+++|++|+|||||+++|.++.+. ..+|.+.. +.. .+|||||+. .+..+.. .++++|++++|||
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-----YND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-----EcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 8999999999999999999988753 33444332 222 789999973 3333333 4789999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
++++.++... . |.... ..|+++++||+|+.+.. ..++..+..... ...+++++||++|.|++++|++
T Consensus 72 ~~~~~s~~~~-~-~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFPP-G-FASIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCCh-h-HHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHHH
Confidence 9998877542 2 32221 24899999999986532 222222211111 1125889999999999999988
Q ss_pred HH
Q 029675 173 LS 174 (189)
Q Consensus 173 l~ 174 (189)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=159.09 Aligned_cols=159 Identities=23% Similarity=0.212 Sum_probs=112.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cc-cCCcCceEEEEEE-cCEEEEEEEcCCCCC-------chhchhhhccCCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEY-KNISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~-~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d 86 (189)
-.|+++|.||||||||++++.+.... .+ ..|.......+.+ +..++.+||+||... ....+...++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 46899999999999999999876533 22 3455666666666 456899999999632 2222334556799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCccccCcceEEEEcccCCCC
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGE 164 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (189)
++++|+|+++.++++....|...+.... .+.++|+++|+||+|+.+..... +..... ....++.++++||++++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence 9999999998778888777766554321 22478999999999987543221 111111 11223468899999999
Q ss_pred ChHHHHHHHHHHHhhc
Q 029675 165 GLYEGLDWLSNNIASK 180 (189)
Q Consensus 165 ~i~~~~~~l~~~~~~~ 180 (189)
|++++++++.+.+.+.
T Consensus 315 GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 315 GLDELLRALWELLEEA 330 (335)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999887653
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=151.57 Aligned_cols=167 Identities=28% Similarity=0.382 Sum_probs=123.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEEEEE--c--CEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY--K--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|++|+|||||+++|.++.+.. +.+|.+..+..... . .+.+.+|||+|+++++..+..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999884 56666655544332 2 4679999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhh----------hCCcccc-CcceEEEEc
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDK----------LGLHSLR-QRHWYIQST 158 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~----------~~~~~~~-~~~~~~~~~ 158 (189)
|+|..+..++.+....|...+........|+++++||+|+........ +... ....... .....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999998666666665555555544334699999999999987642111 1111 0000000 112238899
Q ss_pred ccC--CCCChHHHHHHHHHHHhhccc
Q 029675 159 CAT--SGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 159 Sa~--~~~~i~~~~~~l~~~~~~~~~ 182 (189)
|++ .+.++.+++......+.+...
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 999 999999999999999876543
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=147.53 Aligned_cols=158 Identities=22% Similarity=0.240 Sum_probs=106.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhc--CCccccc-------------C----CcCceEEEEEEcCEEEEEEEcCCCCCchhch
Q 029675 18 MRILMVGLDAAGKTTILYKLKL--GEIVTTI-------------P----TIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~--~~~~~~~-------------~----t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (189)
.+|+++|++++|||||+++|.+ +.+.... + +.......+..+...+++|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999987 4443221 1 2222334566778999999999999999999
Q ss_pred hhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhC-Cc-cccCcce
Q 029675 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG-LH-SLRQRHW 153 (189)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~-~~-~~~~~~~ 153 (189)
..+++.+|++++|+|+.+.. +.....++..... .+.|+++++||+|+.+... .+++...+. .. .....++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998632 2222333333322 4688999999999865322 122222221 00 1123456
Q ss_pred EEEEcccCCCCChHHH------HHHHHHHHhhc
Q 029675 154 YIQSTCATSGEGLYEG------LDWLSNNIASK 180 (189)
Q Consensus 154 ~~~~~Sa~~~~~i~~~------~~~l~~~~~~~ 180 (189)
.++++||++|.|+.+. ++++.+++.+.
T Consensus 158 ~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 158 PVLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred CEEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 7899999999888544 44455555443
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=144.24 Aligned_cols=154 Identities=24% Similarity=0.230 Sum_probs=112.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCccccc-------------------CCcCceEEEEEEcCEEEEEEEcCCCCCchhchh
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-------------------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (189)
+|+++|.+|+|||||++.|.+....... .+.......+......+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999999887654321 233333445666778999999999999988899
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCccc-------
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSL------- 148 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~------- 148 (189)
.+++.+|++++|+|+.++.+... ...+... .. .+.|+++++||+|+...... +.+...+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~-~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIA-RE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHH-HH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 99999999999999987654332 2223332 22 57999999999999864332 223333332221
Q ss_pred --cCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 149 --RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 149 --~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
......++++||++|.|++++++++.+.+
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 12456799999999999999999998875
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-24 Score=147.68 Aligned_cols=133 Identities=20% Similarity=0.355 Sum_probs=104.5
Q ss_pred cccCCcCceEEE--EE--EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC
Q 029675 44 TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119 (189)
Q Consensus 44 ~~~~t~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (189)
.+.||++..+.. +. ...+.+.+|||||+++++.++..+++++|++|+|||++++++|+.+..|+..+..... .+.
T Consensus 8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~ 86 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDV 86 (176)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCC
Confidence 457888877643 33 3458899999999999999999999999999999999999999999988888766432 578
Q ss_pred eEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHHhhccc
Q 029675 120 VLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 120 p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
|+++|+||+|+.+. ...++.... ....++.|++|||++|.||+++|+++++.+.+..+
T Consensus 87 piilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred eEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 99999999998643 222222221 12234468999999999999999999999876543
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=139.32 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=105.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cccCC--cCceEEEEEEcCEEEEEEEcCCCCCchhc--------hhhhccCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT 85 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~~~t--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~ 85 (189)
++|+++|++|+|||||++++.+.... ...++ .......+...+..+.+|||||...+... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999987753 22232 23333455667789999999997655321 23456789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
|++++|+|+.++.+......+.. ....|+++++||+|+.+.... ........++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998776665543322 257999999999998765332 1222345788999999999
Q ss_pred hHHHHHHHHHHH
Q 029675 166 LYEGLDWLSNNI 177 (189)
Q Consensus 166 i~~~~~~l~~~~ 177 (189)
++++++++.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=141.10 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=102.2
Q ss_pred EEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchh--------chhhhccCCCEE
Q 029675 21 LMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQGL 88 (189)
Q Consensus 21 ~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d~~ 88 (189)
+++|.+|+|||||+++|.+.... ...+ |.+.........+..+.+|||||...+.. .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47999999999999999987632 2222 33444556667788999999999987654 334567889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
++|+|..+..+... .++..++.. .+.|+++++||+|+.+...........+. ..++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGF-------GEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCC-------CCeEEEecccCCCHHH
Confidence 99999976543333 233344443 36999999999999765322111111111 1478999999999999
Q ss_pred HHHHHHHHH
Q 029675 169 GLDWLSNNI 177 (189)
Q Consensus 169 ~~~~l~~~~ 177 (189)
+++++.+++
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998763
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=142.03 Aligned_cols=150 Identities=27% Similarity=0.406 Sum_probs=113.3
Q ss_pred EEcCCCCChHHHHHhHhcCCc-cc-ccCCcCceEEEEEEc----CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECC
Q 029675 22 MVGLDAAGKTTILYKLKLGEI-VT-TIPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 22 viG~~~~GKssli~~l~~~~~-~~-~~~t~~~~~~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
++|++|+|||||++++.+... .. ..+|. ......... ...+.+||+||+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998887 33 33444 555554443 678999999999988888888999999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHH
Q 029675 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
++.++.....++..........+.|+++++||+|+.+......... ...........++++|+.++.|++++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEEL--AEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHH--HHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 9888888887744444444447899999999999976544333210 0001122345789999999999999999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=159.69 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=112.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc--ccccCCc--CceEEEEEEcCEEEEEEEcCCCCCchhc--------hhhhc
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTI--GFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (189)
+..++|+++|++|+|||||+|+|.+... .+..|++ +.....+..++..+.+|||||...+... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 4679999999999999999999998753 3444433 3334556778889999999998655432 24577
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
+.+|++++|+|++++.+++.. |+..... .+.|+++|+||+|+.+. +.+.+.. ..+..++++|+++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec
Confidence 899999999999988776654 4444422 47899999999998643 2222221 1223578899998
Q ss_pred CCChHHHHHHHHHHHhhccc
Q 029675 163 GEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~~~~ 182 (189)
.||+++++.+.+.+.+...
T Consensus 346 -~gI~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAFYS 364 (442)
T ss_pred -CCHHHHHHHHHHHHHHHhc
Confidence 6999999999998887653
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.8e-23 Score=151.33 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=104.3
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCccc--c-cCCcCceEEE-EEEcCEEEEEEEcCCCCCchh--------chhhhccCCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVT--T-IPTIGFNVET-VEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQ 86 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~--~-~~t~~~~~~~-~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 86 (189)
+|+++|.+|+|||||+|+|.+..+.. . ..|+...... ....+..+.+|||||...... ....+++.+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999987642 2 2243333322 234557899999999753211 1345678999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCCh
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.....+....+... .....++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999998766554 333333333 478999999999986432211111111110 01115889999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 029675 167 YEGLDWLSNNIASKV 181 (189)
Q Consensus 167 ~~~~~~l~~~~~~~~ 181 (189)
+++++.+.+.+...-
T Consensus 153 ~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 153 SFLAAFIEVHLPEGP 167 (270)
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999998875543
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=146.43 Aligned_cols=157 Identities=27% Similarity=0.392 Sum_probs=116.1
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCC-CEEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT-QGLIFVVD 93 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~d 93 (189)
+|+++|++|+|||||+++|.++.+....+++..+...+.. .+..+.+||+||+++++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998877655554444444333 367899999999999999999999998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-------------C------------
Q 029675 94 SNDR-DRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG-------------L------------ 145 (189)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------------~------------ 145 (189)
+.+. .++.....++..++... .....|+++++||+|+......+.+.+.+. +
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9986 67777777776665432 125799999999999876433222221110 0
Q ss_pred ------c--ccc--CcceEEEEcccCCCC-ChHHHHHHHHH
Q 029675 146 ------H--SLR--QRHWYIQSTCATSGE-GLYEGLDWLSN 175 (189)
Q Consensus 146 ------~--~~~--~~~~~~~~~Sa~~~~-~i~~~~~~l~~ 175 (189)
. .+. ...+.|.++|++.+. |++.+.+|+.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0 011 246789999998876 69999888864
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-23 Score=156.87 Aligned_cols=150 Identities=22% Similarity=0.220 Sum_probs=108.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-c--ccCCcCceEEEEEE-cCEEEEEEEcCCCC---------Cchhchhhhc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNISFTVWDVGGQD---------KIRPLWRHYF 82 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~i~D~~g~~---------~~~~~~~~~~ 82 (189)
..++|+++|.+|+|||||+|+|.+..+. . ..+|.+.....+.. .+..+.+|||||.. .+...+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 3489999999999999999999998743 2 24566776666776 46799999999972 222222 346
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
.++|++++|+|++++.++.....+ ..++......+.|+++|+||+|+.+. .++..... ....++.+||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccC
Confidence 789999999999988776655433 33333333357899999999999753 22221111 112478899999
Q ss_pred CCChHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNN 176 (189)
Q Consensus 163 ~~~i~~~~~~l~~~ 176 (189)
|.|++++++.+.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-23 Score=162.58 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=107.6
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCC--------chhchhhhcc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (189)
...+|+++|.+|+|||||+|+|.+.... ...+ |.+..+..+.+.+..+.+|||||.+. +......+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 3479999999999999999999987654 2333 23334455566778899999999763 2333556788
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCC
Q 029675 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (189)
.+|++|+|+|+++..++.. ..+...+.. .++|+++|+||+|+..... +........ + + ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g-~---~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLG-L---G-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcC-C---C-CeEEEEcCCC
Confidence 9999999999987655432 233344433 5799999999999864321 111111111 1 1 2458999999
Q ss_pred CChHHHHHHHHHHHhh
Q 029675 164 EGLYEGLDWLSNNIAS 179 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~ 179 (189)
.|++++++++++.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999988765
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=144.78 Aligned_cols=152 Identities=22% Similarity=0.192 Sum_probs=105.4
Q ss_pred EEcCCCCChHHHHHhHhcCCcc--cc-cCCcCceEEEEEEc-CEEEEEEEcCCCCC----chhc---hhhhccCCCEEEE
Q 029675 22 MVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPL---WRHYFQNTQGLIF 90 (189)
Q Consensus 22 viG~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~---~~~~~~~~d~~i~ 90 (189)
++|++|+|||||+++|.+.... .. ..|.+.....+... +..+.+|||||... .+.+ ....++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5899999999999999988642 22 23444545556666 78999999999632 2222 2345678999999
Q ss_pred EEECCCc------ccHHHHHHHHHHHhcCCC------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEc
Q 029675 91 VVDSNDR------DRVVEARDELHRMLNEDE------LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (189)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
|+|+.++ .++.....+...+..... ..+.|+++++||+|+.......+.. ...........++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999887 466666666655543322 1479999999999997653333321 111111233468899
Q ss_pred ccCCCCChHHHHHHHHHH
Q 029675 159 CATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~ 176 (189)
||+++.|++++++.+.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999988764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=159.90 Aligned_cols=161 Identities=18% Similarity=0.170 Sum_probs=111.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchhc-----------hhh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRH 80 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~ 80 (189)
..++++++|.+++|||||+|+|++.... ...+ |.+.....+...+..+.+|||||..+.... ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 4589999999999999999999987643 2222 333333455567778999999997654332 134
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCccccCcceEEEEcc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
+++.+|++++|+|++++.+.+.. ..+ ..... .+.|+++++||+|+. +....+++...+.........++++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~-~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL-RIA-GLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH-HHH-HHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 67899999999999876655443 223 33322 478999999999997 3323334443333221112345789999
Q ss_pred cCCCCChHHHHHHHHHHHhhcc
Q 029675 160 ATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~~~ 181 (189)
|++|.|++++++++.+......
T Consensus 326 A~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999988766543
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-25 Score=149.81 Aligned_cols=161 Identities=17% Similarity=0.329 Sum_probs=134.5
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE----EEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+|++++|..++||||+|.+++.+-|. .+..|++.++.+ +..+++...+||++|++.|.....+|++.+.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 5699999999999999999999999887 567788877643 44567888999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
||+-++..+|+....|...+..+. ..+|.++|-||+|+.+.. ...++.... +..++.++.+|++...|+-.
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la-----k~l~~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA-----KKLHKRLYRTSVKEDFNVMH 171 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH-----HHhhhhhhhhhhhhhhhhHH
Confidence 999999999999999999998765 579999999999997542 222222211 12234578899999999999
Q ss_pred HHHHHHHHHhhcccc
Q 029675 169 GLDWLSNNIASKVSS 183 (189)
Q Consensus 169 ~~~~l~~~~~~~~~~ 183 (189)
+|..+++++.++.++
T Consensus 172 vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 172 VFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887654
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-23 Score=145.15 Aligned_cols=157 Identities=20% Similarity=0.116 Sum_probs=104.0
Q ss_pred ceEEEEcCCCCChHHHHHhHhcC----Ccc----c--ccCCcCceEEEEEEc--------------CEEEEEEEcCCCCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG----EIV----T--TIPTIGFNVETVEYK--------------NISFTVWDVGGQDK 73 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~----~~~----~--~~~t~~~~~~~~~~~--------------~~~~~i~D~~g~~~ 73 (189)
++|+++|++++|||||+++|.+. .+. + ...|.+..+..+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111 1 123444444444333 67999999999976
Q ss_pred chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCcc--
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHS-- 147 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~-- 147 (189)
+........+.+|++++|+|+.+.........+. +... .+.|+++++||+|+...... +++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5444445556789999999998644333322211 1121 25799999999998743322 22222211111
Q ss_pred ccCcceEEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
....++.++++||++|+|++++++.+.+++..
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11234578999999999999999999988754
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=158.39 Aligned_cols=147 Identities=20% Similarity=0.285 Sum_probs=110.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc--ccccC--CcCceEEEEEEcCEEEEEEEcCCCCCchhc--------hhhhc
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (189)
++.++|+++|.+|+|||||+|+|.+... .+..+ |.+.....+..++..+.+|||||...+... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4569999999999999999999998764 33333 444555567778889999999998654322 23467
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
+.+|++++|+|++++.++.... .|.. ..+.|+++|+||+|+.+..... ......++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~-~l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDE-ILEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHH-HHHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 8899999999999887766433 2322 2578999999999997542221 11223578999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 029675 163 GEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~ 179 (189)
|.|++++++++.+.+..
T Consensus 355 g~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 355 GEGIDELREAIKELAFG 371 (449)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999998764
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=136.86 Aligned_cols=145 Identities=21% Similarity=0.215 Sum_probs=101.8
Q ss_pred EEcCCCCChHHHHHhHhcCCcc-cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchh------chhhhcc--CCCEEEE
Q 029675 22 MVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYFQ--NTQGLIF 90 (189)
Q Consensus 22 viG~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~d~~i~ 90 (189)
++|.+|+|||||++++.+..+. ...+ |.+.....+..++..+.+|||||+..+.. ++..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999987633 3333 44555566777778999999999876654 2455554 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|+|..+++... .++..+.. .++|+++++||+|+.+..........+. ...+++++++|+.++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 99998754332 23333322 3689999999999975432211111111 1123468899999999999999
Q ss_pred HHHHHHH
Q 029675 171 DWLSNNI 177 (189)
Q Consensus 171 ~~l~~~~ 177 (189)
+++.+.+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9988764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=137.22 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=104.8
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchh-----------chhhh
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP-----------LWRHY 81 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~~~ 81 (189)
.++|+++|.+|+|||||++++.+.... ...+ +.......+...+..+.+|||||..+... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 589999999999999999999987643 2222 22232344556677899999999654311 11235
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEcc
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
++.+|++++|+|..++.+.... ..+..... .+.|+++++||+|+.+. ...+.+...............++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999887665443 22322222 46899999999998765 33333333332211111235688999
Q ss_pred cCCCCChHHHHHHHHHH
Q 029675 160 ATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~ 176 (189)
|+++.|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999988753
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=152.43 Aligned_cols=156 Identities=24% Similarity=0.218 Sum_probs=108.4
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cc-cCCcCceEEEEEEcC-EEEEEEEcCCCCCc----hhch---hhhccCCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPLW---RHYFQNTQ 86 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~----~~~~---~~~~~~~d 86 (189)
-.|+++|.|++|||||++++.+.... .+ ..|.......+...+ ..+.+||+||.... ..+. ...+..++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 57899999999999999999986532 22 235555555566666 89999999997421 1222 33345699
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 87 GLIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
++++|+|+++. +.++....|..++... ....+.|+++|+||+|+.+....+++.+.+.. ..+..++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccC
Confidence 99999999876 5666665555444322 12247899999999999765333333332221 1134688999999
Q ss_pred CCChHHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNNI 177 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~ 177 (189)
++|++++++++.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=135.67 Aligned_cols=141 Identities=23% Similarity=0.322 Sum_probs=101.3
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccC--CcCceEEEEEEcCEEEEEEEcCCCCCc------hhchhhhc--cCCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI------RPLWRHYF--QNTQ 86 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~~~d 86 (189)
++|+++|.||+|||||+|+|.+.+.. ...| |.+.....+...+..+.++|+||.... +.....++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999998854 4444 555555677888999999999995432 22334444 5899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
++++|+|+++. +.......++.. .++|+++++||+|.... ...+.+.+.++. +++.+||++
T Consensus 81 ~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred EEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence 99999999763 333333444443 47999999999997543 245667777654 588999999
Q ss_pred CCChHHHHHHH
Q 029675 163 GEGLYEGLDWL 173 (189)
Q Consensus 163 ~~~i~~~~~~l 173 (189)
++|++++++.+
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999865
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=152.35 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=106.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-c--ccCCcCceEEEEEEcCE-EEEEEEcCCCCCc--hhc------hhhhccCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQDKI--RPL------WRHYFQNT 85 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~i~D~~g~~~~--~~~------~~~~~~~~ 85 (189)
.+|+++|.+|+|||||+|+|.+..+. . ...|.+.....+...+. .+.+|||||..+. ... ....++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 58999999999999999999987653 2 23455555555666554 8899999997432 111 22345789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
|++++|+|++++.++..... +..++......+.|+++|+||+|+.+... ..+... .. .. ..++.+||++|.|
T Consensus 278 DlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~~----~~-~~~v~ISAktG~G 349 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-EE----NK-PIRVWLSAQTGAG 349 (426)
T ss_pred CEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-hc----CC-CceEEEeCCCCCC
Confidence 99999999998876666533 22233322224789999999999864311 111111 00 00 1246899999999
Q ss_pred hHHHHHHHHHHHhhc
Q 029675 166 LYEGLDWLSNNIASK 180 (189)
Q Consensus 166 i~~~~~~l~~~~~~~ 180 (189)
++++++++.+.+...
T Consensus 350 IdeL~e~I~~~l~~~ 364 (426)
T PRK11058 350 IPLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988653
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-22 Score=140.63 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=105.2
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEEcCEEEEEEEcCCCC----------Cchh
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQD----------KIRP 76 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~D~~g~~----------~~~~ 76 (189)
++.+.....+|+++|++|+|||||++++.+..+. ...++.+... .... .+..+.+|||||.. .+..
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 4566677899999999999999999999987643 3333433221 1111 24689999999953 2333
Q ss_pred chhhhccC---CCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcce
Q 029675 77 LWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (189)
Q Consensus 77 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
....+++. .+++++|+|..++..... .++...+.. .+.|+++++||+|+.+....+.+....... +.....
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~~ 169 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGDD 169 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcCC
Confidence 33444443 467888999876543322 223333332 468899999999987543333222211111 111134
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 154 YIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
.++++|++++.|++++++.+.+.+.+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 67899999999999999999887654
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-23 Score=134.21 Aligned_cols=109 Identities=23% Similarity=0.414 Sum_probs=80.7
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc---cccCCc--Cc--eEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV---TTIPTI--GF--NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~---~~~~t~--~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
||+|+|++|+|||||+++|.+..+. ...++. .. ....+......+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 112222 22 2223333445699999999999888877789999999999
Q ss_pred EECCCcccHHHHHHH---HHHHhcCCCCCCCeEEEEEeCCC
Q 029675 92 VDSNDRDRVVEARDE---LHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
||++++++++.+.++ +..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999887544 4444332 25699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=134.30 Aligned_cols=153 Identities=20% Similarity=0.184 Sum_probs=104.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccc---cCCc-CceEEEEEEcCEEEEEEEcCCCCCchh--------chhhhcc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTI-GFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQ 83 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~---~~t~-~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 83 (189)
+..+|+++|++|+|||||++++.+...... ..+. ......+......+.+|||||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998775421 1222 122223344567899999999764432 2344578
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
.+|++++|+|+.++ +.....++...+.. .+.|+++++||+|+.. .....++....... .....++++|+++
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEecc
Confidence 89999999999876 22333344444433 3689999999999873 33333333333221 1124688999999
Q ss_pred CCChHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNN 176 (189)
Q Consensus 163 ~~~i~~~~~~l~~~ 176 (189)
+.|++++++.+.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999998765
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=156.33 Aligned_cols=157 Identities=19% Similarity=0.229 Sum_probs=111.7
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccc-c--CCcCceEEEEEEcCE-EEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~-~--~t~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
..+..+|+++|++++|||||+++|.+..+... . .|.......+...+. .+.+|||||++.|..++...++.+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 34678999999999999999999998876642 2 234444455555444 8999999999999999998999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc----cCcceEEEEcccCCCCC
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATSGEG 165 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 165 (189)
+|+|+++....+. ...+... .. .+.|+++++||+|+.+. ..+++...+..... ......++++||++|+|
T Consensus 164 LVVda~dgv~~qT-~e~i~~~-~~---~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVMPQT-IEAISHA-KA---ANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCCHhH-HHHHHHH-HH---cCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999876432222 1222222 21 47899999999998643 23333333221111 01235789999999999
Q ss_pred hHHHHHHHHHH
Q 029675 166 LYEGLDWLSNN 176 (189)
Q Consensus 166 i~~~~~~l~~~ 176 (189)
++++++++...
T Consensus 238 I~eLl~~I~~~ 248 (587)
T TIGR00487 238 IDELLDMILLQ 248 (587)
T ss_pred hHHHHHhhhhh
Confidence 99999998753
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-22 Score=135.57 Aligned_cols=144 Identities=22% Similarity=0.224 Sum_probs=95.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchh----chhhhccCCCEEEEEEEC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP----LWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~~~~~~d~~i~v~d~ 94 (189)
+|+++|++|+|||||+|++.+.... ..++.+. .+... .+|||||...... .....++.+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-CccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 7999999999999999998765421 1222222 22221 3799999732222 222346899999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
++.+++.. .++.... .+.|+++++||+|+.+. ..+.+.+....... ..+++++||++|+|++++++.+.
T Consensus 75 ~~~~s~~~--~~~~~~~-----~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~---~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRLP--AGLLDIG-----VSKRQIAVISKTDMPDA-DVAATRKLLLETGF---EEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCcccccC--HHHHhcc-----CCCCeEEEEEccccCcc-cHHHHHHHHHHcCC---CCCEEEEECCCccCHHHHHHHHH
Confidence 98765522 3333321 36789999999998653 33333332211111 13688999999999999999998
Q ss_pred HHHhhcc
Q 029675 175 NNIASKV 181 (189)
Q Consensus 175 ~~~~~~~ 181 (189)
+.+.+..
T Consensus 144 ~~~~~~~ 150 (158)
T PRK15467 144 SLTKQEE 150 (158)
T ss_pred Hhchhhh
Confidence 8775543
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=159.50 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=111.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCc--ccccC--CcCceEEEEEEcCEEEEEEEcCCCCC----------chhc-hhh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH 80 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~~ 80 (189)
...+|+++|.+|+|||||+|+|.+... ....+ |.+.....+..++..+.+|||||..+ +..+ ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 458999999999999999999999874 33333 33333345566777899999999532 1111 134
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+++.+|++++|+|+++..+++... .+..+.. .+.|+++|+||+|+.+....+.+.......+......+.+.+||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 468899999999999877766653 3333332 47899999999999765333333333222111112235678999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
++|.|++++++.+.+.+.+..
T Consensus 604 ktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999988876543
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-21 Score=151.72 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=110.8
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcC--ceEEEEEEcCEEEEEEEcCCCCCchhc-----------hh
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPL-----------WR 79 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 79 (189)
...++|+++|.+|+|||||+|+|++.... ...+++. .....+...+..+.+|||||....... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 35699999999999999999999987633 3333222 222344567788999999996432221 22
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcc
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
.+++.+|++++|+|+.++.+.+.. .+...... .+.|+++++||+|+.+....+++...+.........++++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL--RIAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 467889999999999877655443 22333332 4689999999999975433444444433222222345789999
Q ss_pred cCCCCChHHHHHHHHHHHhhc
Q 029675 160 ATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~~ 180 (189)
|++|.|++++++.+.+.....
T Consensus 326 A~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999988765543
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-22 Score=140.21 Aligned_cols=156 Identities=15% Similarity=0.100 Sum_probs=99.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCc---c-c--ccCCcCceEEEEEEc---------------------------C----
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEI---V-T--TIPTIGFNVETVEYK---------------------------N---- 60 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~---~-~--~~~t~~~~~~~~~~~---------------------------~---- 60 (189)
++|+++|+.|+|||||+..+.+... . + ...+....+..+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999865421 1 0 011211111111110 2
Q ss_pred --EEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 029675 61 --ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA- 137 (189)
Q Consensus 61 --~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~- 137 (189)
..+.+|||||++.+...+...+..+|++++|+|+.++.........+..+ ... ...|+++++||+|+.+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHH
Confidence 67999999999998888888888999999999998632111111222222 111 235789999999997542222
Q ss_pred ---HHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 138 ---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 138 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
++...+.. .....+.++++||++|+|++++++.+.+.+.
T Consensus 158 ~~~~i~~~~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 158 NYEQIKKFVKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 12221111 0112456889999999999999999987654
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=152.52 Aligned_cols=148 Identities=23% Similarity=0.303 Sum_probs=104.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCC--------chhchhhhccCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT 85 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~ 85 (189)
.+|+++|.+|+|||||+|+|.+.... ...+ |.+..+..+.+.+..+.+|||||.+. .......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999988743 2233 44555666777889999999999886 233345567899
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
|++++|+|..++.+. ...++..++.. .+.|+++++||+|+.+.. ....+..... +. .++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~lg-~~----~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSLG-LG----EPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhcC-CC----CCEEEEeeCCCC
Confidence 999999999764332 22233334433 378999999999975421 2222221111 11 367899999999
Q ss_pred hHHHHHHHHHHH
Q 029675 166 LYEGLDWLSNNI 177 (189)
Q Consensus 166 i~~~~~~l~~~~ 177 (189)
++++++.+.+..
T Consensus 150 v~~l~~~I~~~~ 161 (435)
T PRK00093 150 IGDLLDAILEEL 161 (435)
T ss_pred HHHHHHHHHhhC
Confidence 999999998743
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-22 Score=139.54 Aligned_cols=156 Identities=23% Similarity=0.218 Sum_probs=111.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc---------------------cccCCcCceEEEEE--EcCEEEEEEEcCCCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---------------------TTIPTIGFNVETVE--YKNISFTVWDVGGQD 72 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~---------------------~~~~t~~~~~~~~~--~~~~~~~i~D~~g~~ 72 (189)
+.++|+++|+.++|||||+++|....-. ...-|.......+. .....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4579999999999999999999753210 11236666677777 788999999999999
Q ss_pred CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-----Ccc
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-----LHS 147 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~ 147 (189)
.|.......++.+|++|+|+|+.+.-.. .....+... .. .+.|+++++||+|+.. ....+...+.. ...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~-~~---~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKIL-RE---LGIPIIVVLNKMDLIE-KELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHH-HH---TT-SEEEEEETCTSSH-HHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccc-cc---cccceEEeeeeccchh-hhHHHHHHHHHHHhccccc
Confidence 9998888889999999999999864322 222223333 32 5788999999999982 22222222221 111
Q ss_pred ccC-cceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 148 LRQ-RHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 148 ~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
... ..++++.+||.+|.|++++++.+.+.+
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 111 357899999999999999999988764
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-21 Score=151.07 Aligned_cols=159 Identities=26% Similarity=0.292 Sum_probs=109.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--c-ccCCcCceEEEEEEcCEEEEEEEcCCCCC----ch---hchhhhccCCCE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKNISFTVWDVGGQDK----IR---PLWRHYFQNTQG 87 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~----~~---~~~~~~~~~~d~ 87 (189)
-+|+++|.||||||||+|+|.+.... . ...|.......+...+..|.+||+||... .. ......+..+|+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 57999999999999999999986543 2 23466666777888888999999999532 11 112334567999
Q ss_pred EEEEEECCCc----ccHHHHHH---HHHHHhcCC-------CCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCccccCcc
Q 029675 88 LIFVVDSNDR----DRVVEARD---ELHRMLNED-------ELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRH 152 (189)
Q Consensus 88 ~i~v~d~~~~----~s~~~~~~---~~~~~~~~~-------~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~ 152 (189)
+++|+|+++. +.++.... .+..+.... ...+.|+++|+||+|+.+.....+ +...+ ...+
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g 314 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EARG 314 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcC
Confidence 9999999752 33433333 333332110 225789999999999975432222 22221 1224
Q ss_pred eEEEEcccCCCCChHHHHHHHHHHHhhcc
Q 029675 153 WYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
+.++++||++++|++++++++.+.+....
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 57899999999999999999998876643
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=154.87 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=109.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCC-------ccc-cc------CCcCceE----EEEEE-----cCEEEEEEEcCCCCC
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVT-TI------PTIGFNV----ETVEY-----KNISFTVWDVGGQDK 73 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~-------~~~-~~------~t~~~~~----~~~~~-----~~~~~~i~D~~g~~~ 73 (189)
-.+|+++|++++|||||+++|+... +.. .. .+.++.+ ..+.+ ..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999998642 111 11 1122222 22333 237899999999999
Q ss_pred chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCccccC
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQ 150 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~ 150 (189)
|...+..+++.+|++|+|+|+++..+.+....|+... . .+.|+++++||+|+.+.... +++.+.++..
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~---- 153 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD---- 153 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999876666555444332 2 36799999999998653221 2333333321
Q ss_pred cceEEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 151 RHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
...++++||++|.|++++++.+.+.+..
T Consensus 154 -~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 154 -ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred -cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1247899999999999999999887644
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-21 Score=130.90 Aligned_cols=150 Identities=24% Similarity=0.197 Sum_probs=104.9
Q ss_pred EEcCCCCChHHHHHhHhcCCccc--c--cCCcCceEEEEEEc-CEEEEEEEcCCCCCchh-------chhhhccCCCEEE
Q 029675 22 MVGLDAAGKTTILYKLKLGEIVT--T--IPTIGFNVETVEYK-NISFTVWDVGGQDKIRP-------LWRHYFQNTQGLI 89 (189)
Q Consensus 22 viG~~~~GKssli~~l~~~~~~~--~--~~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~i 89 (189)
++|++|+|||||++++.+..... . ..+........... ...+.+||+||...... ....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876542 1 12333333333333 67899999999876543 3345778999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|+|..+........ +...... .+.|+++++||+|+........................++++|++++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999877665554 2222222 58999999999999876544443221122222234567899999999999999
Q ss_pred HHHHHHH
Q 029675 170 LDWLSNN 176 (189)
Q Consensus 170 ~~~l~~~ 176 (189)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998875
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-21 Score=151.91 Aligned_cols=148 Identities=24% Similarity=0.305 Sum_probs=106.3
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCC--------CchhchhhhccCCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ 86 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~d 86 (189)
+|+++|.+|+|||||+|+|.+.... ...+ |.+..+..+.+.+..+.+|||||.. .+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987743 2223 4455566677788899999999963 23344566778999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
++++|+|..+..+ .....+..++.. .++|+++|+||+|+.+... ..++ ..++. ..++++||++|.|
T Consensus 81 ~vl~vvD~~~~~~--~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~-~~lg~-------~~~~~vSa~~g~g 147 (429)
T TIGR03594 81 VILFVVDGREGLT--PEDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEF-YSLGF-------GEPIPISAEHGRG 147 (429)
T ss_pred EEEEEEeCCCCCC--HHHHHHHHHHHH---hCCCEEEEEECccCCcccccHHHH-HhcCC-------CCeEEEeCCcCCC
Confidence 9999999976432 222334444443 4789999999999865432 1111 11111 1478999999999
Q ss_pred hHHHHHHHHHHHhh
Q 029675 166 LYEGLDWLSNNIAS 179 (189)
Q Consensus 166 i~~~~~~l~~~~~~ 179 (189)
++++++.+.+.+..
T Consensus 148 v~~ll~~i~~~l~~ 161 (429)
T TIGR03594 148 IGDLLDAILELLPE 161 (429)
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999888744
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=146.34 Aligned_cols=154 Identities=25% Similarity=0.291 Sum_probs=106.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc--c-ccCCcCceEEEEEEc-CEEEEEEEcCCCCC----chhchhhh---ccCCCE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPLWRHY---FQNTQG 87 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~~~~~---~~~~d~ 87 (189)
.|+++|.|+||||||++++.+.+.. . ...|...+...+... +..+.+||+||... ...+...+ +..+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999987632 2 233555555556665 67999999999632 22233333 456999
Q ss_pred EEEEEECCCc---ccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 88 LIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
+++|+|+++. +.++....+...+... ....++|+++|+||+|+.... ..+++...+. ..++++||++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t 311 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT 311 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence 9999999754 4555555544444321 122478999999999984331 1222322222 3588999999
Q ss_pred CCChHHHHHHHHHHHhhc
Q 029675 163 GEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~~ 180 (189)
++|++++++++.+.+.+.
T Consensus 312 geGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 312 GQGLDELLYAVAELLEET 329 (424)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999887654
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=137.05 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=95.5
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCce--EEEEEEcCEEEEEEEcCCCCC----------chh
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKNISFTVWDVGGQDK----------IRP 76 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~D~~g~~~----------~~~ 76 (189)
.+.++.+..+|+++|++|+|||||++++.+..+. ...++.+.. ...+..+ ..+.+|||||... +..
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH
Confidence 4566788999999999999999999999988633 323332221 1122222 3799999999532 222
Q ss_pred chhhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCcccc
Q 029675 77 LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLR 149 (189)
Q Consensus 77 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~ 149 (189)
+...+++ .+|++++|+|..++-+.... .+...+.. .+.|+++++||+|+.+..+. +++...+...
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~--- 161 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD--- 161 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---
Confidence 3334444 46899999999865433332 22333333 47899999999998754322 2233333221
Q ss_pred CcceEEEEcccCCCCChH
Q 029675 150 QRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~ 167 (189)
...+.++++||++|+|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 123468999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-21 Score=142.36 Aligned_cols=158 Identities=19% Similarity=0.211 Sum_probs=106.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccc---cCCcCceEEE-EEEcCEEEEEEEcCCCCCch--------hchhhhcc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVET-VEYKNISFTVWDVGGQDKIR--------PLWRHYFQ 83 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~-~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~ 83 (189)
+.-.|+++|++|+|||||+|+|++..+... ..|+...... ...++..+.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 456799999999999999999999876522 2233332222 23355799999999965432 22334567
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
.+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+.. .....+....+... .....++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999873 23333444444443 4689999999999973 22222232222211 1123688999999
Q ss_pred CCChHHHHHHHHHHHhhcc
Q 029675 163 GEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~~~ 181 (189)
+.|++++++.+.+.+....
T Consensus 156 ~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 156 GDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred CCCHHHHHHHHHHhCCCCC
Confidence 9999999999998876543
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=154.77 Aligned_cols=157 Identities=19% Similarity=0.199 Sum_probs=112.8
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccc-c--CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~-~--~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+.-.|+++|+.++|||||+++|.+..+... . .|.......+.+.+..+.+|||||++.|..++...++.+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45778999999999999999999988776532 2 23334445566677899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCc-c-c--cCcceEEEEcccCCCCCh
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-S-L--RQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~Sa~~~~~i 166 (189)
|+|+++...-+. ...+... .. .+.|+++++||+|+.+. ..+.+...+... . . ....+.++++||++|.|+
T Consensus 367 VVdAddGv~~qT-~e~i~~a-~~---~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQT-IEAINHA-KA---AGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHhH-HHHHHHH-Hh---cCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999986422111 1222222 21 57899999999999653 233333322111 1 1 112367999999999999
Q ss_pred HHHHHHHHHH
Q 029675 167 YEGLDWLSNN 176 (189)
Q Consensus 167 ~~~~~~l~~~ 176 (189)
+++++.+...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998754
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=126.75 Aligned_cols=157 Identities=26% Similarity=0.343 Sum_probs=126.5
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCcc---------cc-c---CCcCceEEEEEEcC-EEEEEEEcCCCCCchhch
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV---------TT-I---PTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 78 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~---------~~-~---~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~ 78 (189)
......||+|+|+.++||||++.++...... +. . .|+..++......+ ..+.+++||||++|..+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 3467899999999999999999999876631 11 1 35556666666655 899999999999999999
Q ss_pred hhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEc
Q 029675 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (189)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
..+.+.+.++|+++|.+.+..+ ... .+..++... ..+|++|+.||.|+.+...++++.+.+.... ...+.++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~-~ii~f~~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAE-EIIDFLTSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHH-HHHHHHhhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeee
Confidence 9999999999999999988877 333 344444442 2299999999999999999999998887664 34578899
Q ss_pred ccCCCCChHHHHHHHHHH
Q 029675 159 CATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~ 176 (189)
++.++++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999998887765
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-21 Score=146.79 Aligned_cols=148 Identities=21% Similarity=0.245 Sum_probs=113.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cc--cCCcCceEEEEEEcCEEEEEEEcCCCCCch---------hchhhhccC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQN 84 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~ 84 (189)
..|+++|.||+|||||+|||.+.+.. +. .-|.+-.+....+.+..|.++||+|-+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999998854 33 347788888899999999999999965322 224556678
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCC
Q 029675 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (189)
||++|+|+|.. +..+.....+..++.. .++|+++|+||+|-... ++...++...++. ..+.+||..|.
T Consensus 84 ADvilfvVD~~--~Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~---e~~~~efyslG~g----~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGR--EGITPADEEIAKILRR---SKKPVILVVNKIDNLKA---EELAYEFYSLGFG----EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCC--CCCCHHHHHHHHHHHh---cCCCEEEEEEcccCchh---hhhHHHHHhcCCC----CceEeehhhcc
Confidence 99999999994 4456666667777764 57999999999997633 2322222222221 46789999999
Q ss_pred ChHHHHHHHHHHH
Q 029675 165 GLYEGLDWLSNNI 177 (189)
Q Consensus 165 ~i~~~~~~l~~~~ 177 (189)
|+.++.+.+++.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999987
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-21 Score=154.79 Aligned_cols=156 Identities=22% Similarity=0.159 Sum_probs=109.0
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCC---cc-ccc--CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGE---IV-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~---~~-~~~--~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+.|+++|++++|||||+++|.+.. +. +.. .|++..+..+..++..+.+||+||++.|.......+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998743 22 222 344555566777778999999999999999888889999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhHHH----hhhCCccccCcceEEEEcccCCCCCh
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEIT----DKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
+|+++....+ ....+ .++.. .++| +++++||+|+.+....+.+. ........ ..+++++++||++|+|+
T Consensus 81 VDa~~G~~~q-T~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 81 VDADEGVMTQ-TGEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EECCCCCcHH-HHHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCCCCc
Confidence 9998632111 11111 22222 3566 99999999997643222222 11111001 11467899999999999
Q ss_pred HHHHHHHHHHHhh
Q 029675 167 YEGLDWLSNNIAS 179 (189)
Q Consensus 167 ~~~~~~l~~~~~~ 179 (189)
+++++.+.+.+..
T Consensus 155 ~eL~~~L~~l~~~ 167 (581)
T TIGR00475 155 GELKKELKNLLES 167 (581)
T ss_pred hhHHHHHHHHHHh
Confidence 9999988776544
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=154.61 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=106.0
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCc--CceEEEEEEcCEEEEEEEcCCCCC--------chhchhhh
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTI--GFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHY 81 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~--~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 81 (189)
+....+|+++|.+|+|||||+|+|.+.... ...|++ +..+....+.+..+.+|||||.+. +......+
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 344578999999999999999999987653 333332 222334455678999999999763 22334556
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccC
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
++.+|++++|+|..+. +......+...+.. .+.|+++|+||+|+..... .......+. .. ..+++||+
T Consensus 352 ~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg-~~----~~~~iSA~ 419 (712)
T PRK09518 352 VSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG-LG----EPYPISAM 419 (712)
T ss_pred HHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC-CC----CeEEEECC
Confidence 7899999999999753 33333344444443 5799999999999864321 111111111 11 24589999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 029675 162 SGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 162 ~~~~i~~~~~~l~~~~~~ 179 (189)
+|.|++++++++.+.+..
T Consensus 420 ~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCchHHHHHHHHhccc
Confidence 999999999999988755
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=152.46 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=111.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccc-c--CCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~-~--~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (189)
..+..+|+++|++++|||||+++|.+..+... . .|.......+.+ .+..+.+|||||++.|..++..+++.+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 35678999999999999999999998776532 1 232222333332 3589999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCc-c-cc--CcceEEEEcccCC
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-S-LR--QRHWYIQSTCATS 162 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~Sa~~ 162 (189)
++|+|+|+++....+.. ..+..+ .. .+.|+++++||+|+.+. ..+++...+... . .. ...++++++||++
T Consensus 321 iaILVVDA~dGv~~QT~-E~I~~~-k~---~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQTI-EAINYI-QA---ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhhH-HHHHHH-Hh---cCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 99999999764322221 222222 22 57899999999998753 233333322111 0 01 1236799999999
Q ss_pred CCChHHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNNI 177 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~ 177 (189)
|.|++++++.+....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999987754
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=147.70 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=103.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC--cc--------------------------------cccCCcCceEEEEEEc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK 59 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 59 (189)
....++|+++|++++|||||+++|+... .. ....|.+..+..+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3567999999999999999999997422 00 1122555666667778
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--H-
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--A- 136 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~- 136 (189)
+..+.+|||||++.|.......++.+|++++|+|++++.++.....+...+.... ...|+++++||+|+.+... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999999887766666789999999999986322322222222333221 2357999999999975321 1
Q ss_pred ---hHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 137 ---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
+++...+....+....+.++++||++|+|+++..
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 2222222222222234679999999999998754
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=120.52 Aligned_cols=163 Identities=22% Similarity=0.323 Sum_probs=126.5
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc---cccCCcCceE-EEEEE---cCEEEEEEEcCCCCCc-hhchhhhccCCCE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNV-ETVEY---KNISFTVWDVGGQDKI-RPLWRHYFQNTQG 87 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~---~~~~t~~~~~-~~~~~---~~~~~~i~D~~g~~~~-~~~~~~~~~~~d~ 87 (189)
+..|++|+|..++|||+++.+++.+... +..||++..| ..++- ....+.++||.|-..+ ..+-..|++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 5689999999999999999999876643 4566766544 33332 2357999999998777 6677889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
+++||++.+++||+.....-..+-+......+|+++++||+|+.+. .++....+...++...+..+++++++..++-
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 9999999999999887654444444555577999999999999754 4444455555555566788899999999999
Q ss_pred HHHHHHHHHHhhcc
Q 029675 168 EGLDWLSNNIASKV 181 (189)
Q Consensus 168 ~~~~~l~~~~~~~~ 181 (189)
+-|..+...+.+..
T Consensus 165 epf~~l~~rl~~pq 178 (198)
T KOG3883|consen 165 EPFTYLASRLHQPQ 178 (198)
T ss_pred hHHHHHHHhccCCc
Confidence 99999988876653
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=147.48 Aligned_cols=156 Identities=21% Similarity=0.228 Sum_probs=109.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCC--c---------ccc---c----CCcCceEEEEEE-----cCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I---------VTT---I----PTIGFNVETVEY-----KNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~--~---------~~~---~----~t~~~~~~~~~~-----~~~~~~i~D~~g~ 71 (189)
.+-.+++++|+.++|||||+++|+... + .+. . .|.......+.+ .++.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345799999999999999999997531 1 111 1 122222233333 3688999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCccc
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSL 148 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~ 148 (189)
.+|...+..+++.+|++|+|+|+++....+....|. .... .+.|+++++||+|+.+.... +++...++..
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~-~~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-- 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-- 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC--
Confidence 999999999999999999999998765544443332 2222 46889999999998653221 2233332221
Q ss_pred cCcceEEEEcccCCCCChHHHHHHHHHHHhhc
Q 029675 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
...++.+||++|.|++++++++.+.+...
T Consensus 158 ---~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 158 ---ASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred ---cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 12478999999999999999998876543
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=148.47 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=102.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcC--Ccc-------------------------c-------ccCCcCceEEEEEEc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EIV-------------------------T-------TIPTIGFNVETVEYK 59 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~--~~~-------------------------~-------~~~t~~~~~~~~~~~ 59 (189)
+...++|+++|++++|||||+.+|+.. .+. + ...|.+.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 456799999999999999999999752 111 0 012444445556667
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN--A 136 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~ 136 (189)
+..+.+|||||+++|.......+..+|++++|+|+++.+++..... +...+.... ...|+++++||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 8899999999999887777777889999999999987643211111 111222221 2468999999999975321 1
Q ss_pred ----hHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 137 ----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
+++........+....+.++++||++|.|+.+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1222222222222234689999999999998744
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=129.83 Aligned_cols=149 Identities=22% Similarity=0.196 Sum_probs=101.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-c--ccCCcCceEEEEEEcCEEEEEEEcCCCCCch-------hchhhhccCCCEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 88 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d~~ 88 (189)
+++++|.+|+|||||+++|.+.... . ...|.+.....+.+.+..+++||+||..... .....+++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999987632 2 2334445556677788999999999975332 2244678999999
Q ss_pred EEEEECCCcc-cHHHHHHHHHH----------------------------------------HhcCC-------------
Q 029675 89 IFVVDSNDRD-RVVEARDELHR----------------------------------------MLNED------------- 114 (189)
Q Consensus 89 i~v~d~~~~~-s~~~~~~~~~~----------------------------------------~~~~~------------- 114 (189)
++|+|+++++ ....+...+.. ++.+.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 9999998654 22222222210 11000
Q ss_pred -----------CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 115 -----------ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 115 -----------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
.....|+++|+||+|+.+. ++... +.. . ..++++||+++.|++++++.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~~----~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LAR----Q--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hhc----C--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0123689999999998654 33332 111 1 2377899999999999999988764
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=140.10 Aligned_cols=160 Identities=22% Similarity=0.176 Sum_probs=107.6
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cc--cCCcCceEEEEEEcC-EEEEEEEcCCCCCc-------hhchhhhccCCCE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI-------RPLWRHYFQNTQG 87 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~-------~~~~~~~~~~~d~ 87 (189)
.|+++|.||||||||+|+|.+.+.. +. ..|.......+...+ ..+.++||||.-.- .......+..+|+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 6999999999999999999987643 22 235555566666654 46999999996431 1112235678999
Q ss_pred EEEEEECC---CcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCC
Q 029675 88 LIFVVDSN---DRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (189)
Q Consensus 88 ~i~v~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (189)
+++|+|++ +.+.++....++..+... ....+.|+++|+||+|+.+.....+....+... . .....++.+||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~-~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-L-GWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-h-CCCCCEEEEECCCC
Confidence 99999987 344555555555444332 122468999999999987543322222221110 0 01124778999999
Q ss_pred CChHHHHHHHHHHHhhc
Q 029675 164 EGLYEGLDWLSNNIASK 180 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~~ 180 (189)
.|++++++.+.+.+.+.
T Consensus 319 ~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 319 LGVKELCWDLMTFIEEN 335 (390)
T ss_pred cCHHHHHHHHHHHhhhC
Confidence 99999999999988664
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=124.18 Aligned_cols=170 Identities=15% Similarity=0.215 Sum_probs=131.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE--E--EEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
.-.+||.++|++..|||||+-++.++.+. +...+.++++.. + ...++.|.+||.+|++++..+.+....++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 44689999999999999999999999986 456677777643 3 335678999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
++||++.++++..+..|+.+...... ..+| |++|+|.|+.-... .++-....+...++..+...+.||+....||+
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 99999999999999999988766533 4566 77899999743221 12111111222233345567789999999999
Q ss_pred HHHHHHHHHHhhccccCcc
Q 029675 168 EGLDWLSNNIASKVSSLTS 186 (189)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~~ 186 (189)
.+|..+..++.......++
T Consensus 176 KIFK~vlAklFnL~~ti~~ 194 (205)
T KOG1673|consen 176 KIFKIVLAKLFNLPWTIPE 194 (205)
T ss_pred HHHHHHHHHHhCCceeccc
Confidence 9999999998887655544
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=136.67 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=113.9
Q ss_pred hhccCCceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchhc--------hh
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WR 79 (189)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~ 79 (189)
..-++.++++++|.||+|||||+|.|.+.... +..| |.++-...++.+++.+.++||+|-...... ..
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 34467899999999999999999999998743 5444 666666778899999999999996543322 33
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcc
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
..+..||.+++|+|.+.+.+ .....+..... .++|+++|.||.|+........+ +. ..+..++.+|
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~--~~d~~~~~~~~----~~~~~i~v~NK~DL~~~~~~~~~-~~-------~~~~~~i~iS 357 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLD--KEDLALIELLP----KKKPIIVVLNKADLVSKIELESE-KL-------ANGDAIISIS 357 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCc--hhhHHHHHhcc----cCCCEEEEEechhcccccccchh-hc-------cCCCceEEEE
Confidence 45578999999999987522 11111222111 57999999999999876553333 11 1122578899
Q ss_pred cCCCCChHHHHHHHHHHHhhc
Q 029675 160 ATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~~ 180 (189)
+++|+|++.+.+.+.+.+...
T Consensus 358 a~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 358 AKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ecCccCHHHHHHHHHHHHhhc
Confidence 999999999999998887766
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.1e-20 Score=132.58 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=111.4
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cccC-CcCceE-EEEEEcCEEEEEEEcCCCCCc--------hhchhhhc
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNV-ETVEYKNISFTVWDVGGQDKI--------RPLWRHYF 82 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~-t~~~~~-~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~ 82 (189)
.+.-.|+++|.||+|||||+|++++.+.. +..| |+...+ ..+..++..+.++||||--.- .+.....+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 45567899999999999999999999976 3332 443333 334557889999999994221 22244556
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCccccCcceEEEEcccC
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
..+|++++|+|+.++ +.....+..+.++. .+.|+++++||.|...... ...+........ .....+++||+
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~---~f~~ivpiSA~ 155 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL---PFKEIVPISAL 155 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhC---CcceEEEeecc
Confidence 789999999999764 33344555555554 4689999999999876644 233333222111 11268899999
Q ss_pred CCCChHHHHHHHHHHHhhcc
Q 029675 162 SGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 162 ~~~~i~~~~~~l~~~~~~~~ 181 (189)
+|.|++.+.+.+.+.+-+-.
T Consensus 156 ~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred ccCCHHHHHHHHHHhCCCCC
Confidence 99999999999988876543
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-19 Score=128.95 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=82.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCc--------------ccc-------cCCcCceEEEEEEcCEEEEEEEcCCCCCchhc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEI--------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~--------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (189)
+|+++|++|+|||||+++|+...- .+. ..|.......+.+++.++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999975310 010 11333445667788999999999999999999
Q ss_pred hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+..+++.+|++++|+|..+.... ....++..... .+.|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccC
Confidence 99999999999999999865432 23344443332 4789999999999875
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=145.62 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=112.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcC--Ccccc-----------------cCCcCceEEEEEEcCEEEEEEEcCCCCCchhch
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG--EIVTT-----------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~--~~~~~-----------------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (189)
.+|+++|+.++|||||+++|+.. .+... ..|+......+.+.++++.+|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999852 22111 123344445678889999999999999999999
Q ss_pred hhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCccc--cCcce
Q 029675 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RQRHW 153 (189)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~ 153 (189)
..+++.+|++++|+|+.+.. ......+|..... .++|+++++||+|+.+... .+++...+..... ++..+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999997532 3344455555544 4688999999999865321 1222232221111 22346
Q ss_pred EEEEcccCCCC----------ChHHHHHHHHHHHhh
Q 029675 154 YIQSTCATSGE----------GLYEGLDWLSNNIAS 179 (189)
Q Consensus 154 ~~~~~Sa~~~~----------~i~~~~~~l~~~~~~ 179 (189)
+++.+||++|. |++.+++.+++.+-.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 78899999995 799999888877654
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=145.99 Aligned_cols=139 Identities=18% Similarity=0.255 Sum_probs=98.6
Q ss_pred cCCCCChHHHHHhHhcCCcc-cccCCcCc--eEEEEEEcCEEEEEEEcCCCCCchhc------hhhhc--cCCCEEEEEE
Q 029675 24 GLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIFVV 92 (189)
Q Consensus 24 G~~~~GKssli~~l~~~~~~-~~~~t~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~v~ 92 (189)
|++|+|||||+|++.+.... .+.|++.. ....+..++..+++|||||++++... ...++ ..+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999988753 44454433 33456667788999999999876543 33333 3799999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|.++.+. ...+..+... .+.|+++++||+|+.+... .+++.+.+ +++++++||++|+|+++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 9986432 2233333332 4789999999999854321 22333333 24688999999999999
Q ss_pred HHHHHHHHH
Q 029675 169 GLDWLSNNI 177 (189)
Q Consensus 169 ~~~~l~~~~ 177 (189)
+++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=144.73 Aligned_cols=153 Identities=22% Similarity=0.194 Sum_probs=103.2
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcccccC-----CcCceEEEEEE----------------cCEEEEEEEcCCCCCch
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY----------------KNISFTVWDVGGQDKIR 75 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~ 75 (189)
.--|+++|++++|||||+++|.+..+....+ +++..+...+. ....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3468999999999999999999887653322 22332221111 11238899999999999
Q ss_pred hchhhhccCCCEEEEEEECCCc---ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------HhH
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------AAE 138 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~~~ 138 (189)
.++..+++.+|++++|+|+++. .+++.+ ..+.. .+.|+++++||+|+.+... .+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 9999999999999999999863 333222 12222 4789999999999864210 111
Q ss_pred HH-----------hhhCCccc----------cCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 139 IT-----------DKLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 139 ~~-----------~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
+. ..+....+ ......++++||++|+|++++.+++....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 10 01111111 11346899999999999999999886544
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-20 Score=124.39 Aligned_cols=157 Identities=22% Similarity=0.338 Sum_probs=134.2
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.++++++|..|.|||+++.+.+.++|. .+.+|++........ +.++|..|||+|++.+......++-++.+.|++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 689999999999999999999999998 678899988765443 238999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
||+...-.+.+...|...+.... .++|++++|||.|..+.. .......+....++++++.|++++.|.+.-|-
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccchH
Confidence 99998889999999999988765 479999999999987542 22333444555678899999999999999999
Q ss_pred HHHHHHhhc
Q 029675 172 WLSNNIASK 180 (189)
Q Consensus 172 ~l~~~~~~~ 180 (189)
++.+++.-.
T Consensus 163 ~LarKl~G~ 171 (216)
T KOG0096|consen 163 WLARKLTGD 171 (216)
T ss_pred HHhhhhcCC
Confidence 999987654
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=129.32 Aligned_cols=148 Identities=18% Similarity=0.118 Sum_probs=93.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCc--cc--------------------------------ccCCcCceEEEEEEcCEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEI--VT--------------------------------TIPTIGFNVETVEYKNISFT 64 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~--~~--------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (189)
||+++|++|+|||||+++|+...- .. ...|.+.....+..++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999965321 10 11133444445666778999
Q ss_pred EEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhh
Q 029675 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDK 142 (189)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~ 142 (189)
+|||||+++|.......++.+|++++|+|+.+... ........+.... ...++++++||+|+.+... ...+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~--~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL--EQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc--HhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887666777889999999999976432 1111122222221 2345788999999865321 1122211
Q ss_pred hCC--ccccCcceEEEEcccCCCCChHHHH
Q 029675 143 LGL--HSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 143 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
... ..+......++.+||++|.|+.+..
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 110 0011112468899999999998543
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-19 Score=134.17 Aligned_cols=160 Identities=17% Similarity=0.204 Sum_probs=115.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc--ccc--CCcCceEEEEEEcCEEEEEEEcCCCCCchhc-----------hhh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRH 80 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~ 80 (189)
..+||+++|.|++|||||+|++++++.. +.. .|.+.....+++++.++.++||+|-.+-... ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4599999999999999999999998854 333 3555656677788999999999994322111 334
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQST 158 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
.+..+|++++|+|...+ +......+..++.+ .+.+++++.||+|+.+. ...++....+...+-.-...+.+.+
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 55689999999999765 45555556666665 68999999999998765 3444444433322111122367789
Q ss_pred ccCCCCChHHHHHHHHHHHhhc
Q 029675 159 CATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
||++|.++.++++.+.+...+.
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred EecCCCChHHHHHHHHHHHHHh
Confidence 9999999999999887665443
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=141.73 Aligned_cols=159 Identities=19% Similarity=0.108 Sum_probs=103.5
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc------cCCcCceEEEE--------------------EE------cCEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTIGFNVETV--------------------EY------KNIS 62 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~------~~t~~~~~~~~--------------------~~------~~~~ 62 (189)
+..++|+++|++++|||||++.|.+...... .-|+...+..+ +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4678999999999999999999975422111 01221111110 00 1468
Q ss_pred EEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hH
Q 029675 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AE 138 (189)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~ 138 (189)
+.+|||||++.|...+......+|++++|+|+++..........+. .+... ...|+++++||+|+.+.... ++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 9999999999998888888889999999999986421111122222 22221 23578999999999764322 22
Q ss_pred HHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
+...+... ...++.++++||++|+|++++++.+...+.
T Consensus 159 i~~~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 22211110 112467899999999999999999987654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-19 Score=142.73 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=110.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc--CCcccc-------------cCCcCce----EEEEEEcCEEEEEEEcCCCCCch
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVTT-------------IPTIGFN----VETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~--~~~~~~-------------~~t~~~~----~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
.+-.+|+++|+.++|||||+++|+. +.+... ..+.++. ...+.+++.++++|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 4567999999999999999999986 223211 1223332 34566788999999999999999
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCccc--cC
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RQ 150 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~ 150 (189)
..+..+++.+|++++|+|+.+.... .....+..... .+.|.++++||+|+.+... .+++...+..... .+
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999999764322 22333443333 4688899999999875432 2333333321111 22
Q ss_pred cceEEEEcccCCCC----------ChHHHHHHHHHHHh
Q 029675 151 RHWYIQSTCATSGE----------GLYEGLDWLSNNIA 178 (189)
Q Consensus 151 ~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~ 178 (189)
..++++.+||++|. |+..+++.+++.+-
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 45678999999998 57777777776654
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=144.93 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=104.3
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchhc----------hhhhc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF 82 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~~ 82 (189)
+.++|+++|+||+|||||+|++.+.... .+.+ |.+.....+..++..+.+|||||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 4679999999999999999999886543 2233 344444556677889999999998766431 12232
Q ss_pred --cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCccccCcceEEE
Q 029675 83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQ 156 (189)
Q Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 156 (189)
..+|++++|+|.++.+. ...++.+... .+.|+++++||+|+.+... .+++.+.+ +++++
T Consensus 82 ~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L--------G~pVv 146 (772)
T PRK09554 82 LSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARL--------GCPVI 146 (772)
T ss_pred hccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHh--------CCCEE
Confidence 47999999999987543 2233444332 4799999999999864322 22333333 34588
Q ss_pred EcccCCCCChHHHHHHHHHHH
Q 029675 157 STCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
++|+++++|++++.+.+.+..
T Consensus 147 piSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhh
Confidence 999999999999999887764
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=141.25 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=103.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccccC-----CcCceEEEEEE------cC-----E-----EEEEEEcCCCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY------KN-----I-----SFTVWDVGGQDK 73 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~------~~-----~-----~~~i~D~~g~~~ 73 (189)
.+.-.|+++|++++|||||+++|.+..+....+ +++..+..... .. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 456689999999999999999998766543322 33332221111 00 1 278999999999
Q ss_pred chhchhhhccCCCEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------A 136 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~ 136 (189)
|..++...++.+|++++|+|+++ +.++..+. .+.. .+.|+++++||+|+..... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 99998888899999999999986 33333221 2222 4789999999999852110 0
Q ss_pred hH-----------HHhhhCCcccc----------CcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 137 AE-----------ITDKLGLHSLR----------QRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 137 ~~-----------~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
.. +...+....+. ...+.++++||++|+|++++++.+...+
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 10 11111111111 1356899999999999999998876543
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-19 Score=138.13 Aligned_cols=161 Identities=17% Similarity=0.114 Sum_probs=102.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCccc------ccCCcCceEEEEEE------------------c--------CE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVETVEY------------------K--------NI 61 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~------~~~t~~~~~~~~~~------------------~--------~~ 61 (189)
....++|+++|+.++|||||+..|.+..... ...|....+....+ + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 3567999999999999999999996532111 11122221111000 0 25
Q ss_pred EEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----
Q 029675 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---- 137 (189)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---- 137 (189)
.+.+|||||+++|..........+|++++|+|+.++..-......+..+ ... ...|+++++||+|+.+.....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999988777666677789999999998642111111122221 111 234689999999997643321
Q ss_pred HHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
++...+... ....+.++++||++|+|++++++.+.+.+..
T Consensus 163 ~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 163 QIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 222221110 1124578999999999999999999887643
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-19 Score=128.94 Aligned_cols=146 Identities=20% Similarity=0.196 Sum_probs=96.6
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC---------------------------cccc-------cCCcCceEEEEEEcCEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE---------------------------IVTT-------IPTIGFNVETVEYKNISFT 64 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~---------------------------~~~~-------~~t~~~~~~~~~~~~~~~~ 64 (189)
+|+++|++++|||||+.+|+... +... ..|.+.....+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999985321 0000 1134444556777889999
Q ss_pred EEEcCCCCCchhchhhhccCCCEEEEEEECCCccc---H---HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----C
Q 029675 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAVLLVFANKQDLPNA----M 134 (189)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~ 134 (189)
+|||||+..+...+...++.+|++++|+|+++... | ......+. ..... ..+|+++++||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--CCCeEEEEEEccccccccccHH
Confidence 99999998887777777889999999999987420 1 11112222 22221 24789999999999742 1
Q ss_pred CHhHHHhhh----CCccccCcceEEEEcccCCCCChH
Q 029675 135 NAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 135 ~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
..+++...+ .........++++++||++|+|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 123333322 222222345789999999999987
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-19 Score=119.47 Aligned_cols=161 Identities=32% Similarity=0.584 Sum_probs=130.6
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
.+.=|+++.|-.|+|||||++.|-.++.....||.-..-.++.+.+.+|+-+|.+|+...+..|..|+..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 45679999999999999999999887765544544444445788999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcc------------ccCcceEEEEcccCC
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRQRHWYIQSTCATS 162 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~ 162 (189)
.+.+.|.+.+..+..++......+.|+++.+||.|.......+++...+++.. ...+.+..+.||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 99999999999888888876668999999999999988776666655443211 122456778899888
Q ss_pred CCChHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSN 175 (189)
Q Consensus 163 ~~~i~~~~~~l~~ 175 (189)
+.|--+.|.|+..
T Consensus 178 ~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQ 190 (193)
T ss_pred cCccceeeeehhh
Confidence 8887777777654
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=122.14 Aligned_cols=146 Identities=18% Similarity=0.108 Sum_probs=96.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCC--------c----cc-------ccCCcCceEEEEEEcCEEEEEEEcCCCCCchhc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE--------I----VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~--------~----~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (189)
.++|+++|++++|||||+++|++.. . .+ ...|.+.....+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5789999999999999999997531 0 00 011333333445556788999999999888877
Q ss_pred hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCccccCc
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLRQR 151 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~ 151 (189)
....+..+|++++|+|+...- ......+...+.. .+.| +++++||+|+....+ .+ ++...+....+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGP--MPQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 777888999999999997532 2222222233332 3555 789999999864322 12 22233222222234
Q ss_pred ceEEEEcccCCCCChH
Q 029675 152 HWYIQSTCATSGEGLY 167 (189)
Q Consensus 152 ~~~~~~~Sa~~~~~i~ 167 (189)
.++++.+||++|.|+.
T Consensus 157 ~v~iipiSa~~g~n~~ 172 (195)
T cd01884 157 NTPIVRGSALKALEGD 172 (195)
T ss_pred CCeEEEeeCccccCCC
Confidence 5789999999999864
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-19 Score=142.27 Aligned_cols=156 Identities=19% Similarity=0.103 Sum_probs=104.3
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC---ccc---ccCCcCceEEEEEE-cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE---IVT---TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~---~~~---~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
-|+++|++++|||||+++|.+.. +.. ...|++..+..+.. .+..+.+|||||+++|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999998643 221 13355554444443 346789999999999988777888999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhHHHhhhCCcc--ccCcceEEEEcccCCCCChHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEITDKLGLHS--LRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
+|+++.. .........++.. .+.| +++|+||+|+.+....+.+........ ......+++++||++|.|+++
T Consensus 82 Vda~eg~--~~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGV--MAQTREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 9987632 1111122223332 2344 689999999976433333222221110 001134689999999999999
Q ss_pred HHHHHHHHHhh
Q 029675 169 GLDWLSNNIAS 179 (189)
Q Consensus 169 ~~~~l~~~~~~ 179 (189)
+++.+.+....
T Consensus 157 L~~~L~~~~~~ 167 (614)
T PRK10512 157 LREHLLQLPER 167 (614)
T ss_pred HHHHHHHhhcc
Confidence 99999875543
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-18 Score=117.77 Aligned_cols=161 Identities=16% Similarity=0.226 Sum_probs=110.1
Q ss_pred HHhhhccCCceEEEEcCCCCChHHHHHhHhcCCc-c--cccC--CcCceEEEEEEcCEEEEEEEcCCC----------CC
Q 029675 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-V--TTIP--TIGFNVETVEYKNISFTVWDVGGQ----------DK 73 (189)
Q Consensus 9 ~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~-~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~----------~~ 73 (189)
+.+.++....-|+++|.+|+|||||||+|.+++- . +..| |.-.++..+... +.+.|.||. +.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHH
Confidence 3556777888999999999999999999999762 3 3333 444444444332 899999993 34
Q ss_pred chhchhhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCc
Q 029675 74 IRPLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH 146 (189)
Q Consensus 74 ~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~ 146 (189)
+..+...|++ +..++++++|+..+ ....+..+.+++.. .++|+++++||+|.....+. ..+.+.+...
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 4555556665 36788889998543 34444455555555 68999999999998765433 3333333333
Q ss_pred cccCcceEEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
...... ++-.|+..+.|++++...|.+.+..
T Consensus 168 ~~~~~~--~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDDQW--VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCccce--EEEEecccccCHHHHHHHHHHHhhc
Confidence 222111 6678999999999999998887654
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-19 Score=116.46 Aligned_cols=134 Identities=23% Similarity=0.298 Sum_probs=93.7
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCC----CchhchhhhccCCCEEEEEEEC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD----KIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
||+++|+.|+|||||+++|.+... .+..|..+. +.+ .++||||.. .+.........++|++++|.|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~-----~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIE-----YYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeE-----ecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 799999999999999999988654 333333332 221 359999953 3333344455689999999999
Q ss_pred CCccc-HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 95 NDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 95 ~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
+++.+ |.. .+... .+.|+|-|+||+|+. +..+.+...+.+...+.+ ..|++|+.+|+|++++.++
T Consensus 74 t~~~~~~pP---~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 74 TEPRSVFPP---GFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCccCCc---hhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHH
Confidence 87643 222 12222 368999999999998 444555555555554443 3579999999999999998
Q ss_pred HH
Q 029675 173 LS 174 (189)
Q Consensus 173 l~ 174 (189)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=119.31 Aligned_cols=152 Identities=19% Similarity=0.217 Sum_probs=94.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEEcCEEEEEEEcCCCCC----------chhchhhhcc--
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ-- 83 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~-- 83 (189)
.|+++|++|+|||||++++.++.+. ...++.+... ..+..+. .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999965543 2333333222 2222233 899999999543 2233333333
Q ss_pred -CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-cCcceEEEEcccC
Q 029675 84 -NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCAT 161 (189)
Q Consensus 84 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 161 (189)
..+++++++|.....+... ..+...+.. .+.|+++++||+|+.................. ......++++|++
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 4678999999875532211 112223332 35889999999998654333322222211100 1233468899999
Q ss_pred CCCChHHHHHHHHHH
Q 029675 162 SGEGLYEGLDWLSNN 176 (189)
Q Consensus 162 ~~~~i~~~~~~l~~~ 176 (189)
++.|++++++++.+.
T Consensus 155 ~~~~~~~l~~~l~~~ 169 (170)
T cd01876 155 KGQGIDELRALIEKW 169 (170)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998875
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-20 Score=125.95 Aligned_cols=166 Identities=17% Similarity=0.249 Sum_probs=129.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE----EEEEcC-EEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~----~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
++++|+|..++|||+++.+++.+.|. -+..|++.++. .++... +++++||.+||+++..+...+++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 89999999999999999999998887 56778887653 222222 5789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCC---CCCeEEEEEeCCCCCCCCC---HhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
||+++.-+|+....|..++-....+ ...|+++..||||...... .+.+........+. ..+++|++.+.+
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~----gwtets~Kenkn 181 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE----GWTETSAKENKN 181 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc----ceeeeccccccC
Confidence 9999999999999888877654333 4588999999999754321 12222222222222 477999999999
Q ss_pred hHHHHHHHHHHHhhccccCccC
Q 029675 166 LYEGLDWLSNNIASKVSSLTSS 187 (189)
Q Consensus 166 i~~~~~~l~~~~~~~~~~~~~~ 187 (189)
+.|+...+++.++-.-.+..++
T Consensus 182 i~Ea~r~lVe~~lvnd~q~~~s 203 (229)
T KOG4423|consen 182 IPEAQRELVEKILVNDEQPIKS 203 (229)
T ss_pred hhHHHHHHHHHHHhhccCCccc
Confidence 9999999999998776544443
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-18 Score=122.88 Aligned_cols=151 Identities=25% Similarity=0.250 Sum_probs=98.3
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCccccc-----------------CC-------cCceE-----------------EEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-----------------PT-------IGFNV-----------------ETVE 57 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~-----------------~t-------~~~~~-----------------~~~~ 57 (189)
||+++|+.++|||||+.+|..+.+.... .| .+++. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999865432100 01 11110 1123
Q ss_pred EcCEEEEEEEcCCCCCchhchhhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 029675 58 YKNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (189)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 135 (189)
..+..+.++||||+++|.......+. .+|++++|+|+.... ......+..++.. .++|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 34678999999999988766555554 699999999987543 2332333333333 4688999999999865433
Q ss_pred HhH----HHhhhCCccc---------------------cCcceEEEEcccCCCCChHHHHHHHH
Q 029675 136 AAE----ITDKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 136 ~~~----~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
..+ +...+..... ....++++.+|+.+|+|++++...|.
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 322 2233321111 12334789999999999999987764
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-18 Score=122.74 Aligned_cols=166 Identities=23% Similarity=0.299 Sum_probs=108.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc----cccCCcCceEEEEEE-cCEEEEEEEcCCCCCchh-----chhhhccCCCEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----LWRHYFQNTQGL 88 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d~~ 88 (189)
||+++|+.++||||+...+.++..+ ...+|..+....+.. ....+++||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7999999999999998888766543 336888888888875 457999999999975544 367788999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHh----hhCCccc--cCcceEEEEccc
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITD----KLGLHSL--RQRHWYIQSTCA 160 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~Sa 160 (189)
|||+|+.+.+ +.....++...+.. ...++..+.+.++|+|+..+....++.+ ....... ....+.|+.||-
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999997433 44444444443332 2237899999999999876533222221 1111101 111478999999
Q ss_pred CCCCChHHHHHHHHHHHhhccccCcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKVSSLTS 186 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~~~~~~ 186 (189)
.+ +++-+++..++..+..+.+.+.+
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~~le~ 184 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLSTLEN 184 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHCCCCC
T ss_pred cC-cHHHHHHHHHHHHHcccHHHHHH
Confidence 99 68999999999999888766554
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=114.42 Aligned_cols=162 Identities=25% Similarity=0.381 Sum_probs=123.8
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhcc---CCCEEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---NTQGLIF 90 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~i~ 90 (189)
..+.-.|+++|+.++|||+|+.+|..+.+..+.++...+...+..++...+++|.||+++.+.-...++. .+.++++
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 3445689999999999999999999998877777788888888888888999999999999888877777 7999999
Q ss_pred EEECC-CcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-----------------------
Q 029675 91 VVDSN-DRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG----------------------- 144 (189)
Q Consensus 91 v~d~~-~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----------------------- 144 (189)
|+|.. .........+.+-.++... ....+|++++.||.|+......+.+.+++.
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 99986 3444555556666666544 235799999999999876544333332211
Q ss_pred ------------CccccCcceEEEEcccCCCCChHHHHHHHHHH
Q 029675 145 ------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 145 ------------~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
...+....+.|.++|++++ +++++-+|+.+.
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1111225678999999998 899999998765
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-18 Score=134.94 Aligned_cols=165 Identities=17% Similarity=0.200 Sum_probs=127.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceE---EEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+.+||+++|+.|+||||||-.++..+++...|..-..+ ..+.-+.+..++.|++..+.-+......++.+|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4678999999999999999999999999886655322111 2222345669999999877777777778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCCCCCCCH--hH----HHhhhCCccccCcceEEEEcccCC
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNA--AE----ITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
||+.+++++++.+...|...+++... .+.|+|+||||+|....... +. +..++... + .+++|||++
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei--E----tciecSA~~ 159 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI--E----TCIECSALT 159 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH--H----HHHhhhhhh
Confidence 99999999999999999998887542 47999999999998754332 22 22222221 1 478999999
Q ss_pred CCChHHHHHHHHHHHhhccccC
Q 029675 163 GEGLYEGLDWLSNNIASKVSSL 184 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~~~~~~ 184 (189)
..++.++|....+.+......+
T Consensus 160 ~~n~~e~fYyaqKaVihPt~PL 181 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVIHPTSPL 181 (625)
T ss_pred hhhhHhhhhhhhheeeccCccc
Confidence 9999999999988887665443
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=121.92 Aligned_cols=124 Identities=21% Similarity=0.256 Sum_probs=87.2
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCC--cc----------------cc-------cCCcCceEEEEEEcCEEEEEEEcCCC
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE--IV----------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~--~~----------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (189)
..+|+++|++|+|||||+++|+... .. +. ..++......+.+.+.++++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 3689999999999999999997421 00 00 11223334567788999999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCC
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL 145 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~ 145 (189)
.+|.......++.+|++|+|+|+++.... ....++. .... .++|+++++||+|+.+... .+++.+.++.
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~-~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~ 153 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFE-VCRL---RGIPIITFINKLDREGRDPLELLDEIEEELGI 153 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHH-HHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHCC
Confidence 99888777788999999999999764321 2223333 3322 4789999999999866543 3455555543
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-18 Score=131.09 Aligned_cols=159 Identities=19% Similarity=0.168 Sum_probs=102.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCc------------c-------cccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
.+..++|+++|++++|||||+++|++... . ....|.+.....+..++..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 45679999999999999999999976210 0 0111333333344446678999999999988
Q ss_pred hhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCccc
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSL 148 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (189)
.......+..+|++++|+|+.+...- .....+. ++.. .++| +++++||+|+.+..+. + ++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~-~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHIL-LARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHH-HHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 77777777889999999998753221 1122222 2222 3566 6789999998743221 1 22222222222
Q ss_pred cCcceEEEEcccCCCC--------ChHHHHHHHHHHH
Q 029675 149 RQRHWYIQSTCATSGE--------GLYEGLDWLSNNI 177 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~~~ 177 (189)
....++++.+||++|. ++.++++.+.+.+
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 2234678999999983 4666666666554
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-17 Score=121.57 Aligned_cols=109 Identities=18% Similarity=0.125 Sum_probs=80.6
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC--c------------cc-------ccCCcCceEEEEEEcCEEEEEEEcCCCCCchhc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE--I------------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~--~------------~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (189)
+|+++|++++|||||+++|+... . .+ ...|+......+.+++..+.+|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999996311 0 00 012444455667788999999999999988888
Q ss_pred hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+...++.+|++++|+|..+...-. ....+.... . .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~-~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQAD-R---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHH-H---cCCCEEEEEECCCCCC
Confidence 899999999999999997643221 122333332 2 4689999999999864
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-17 Score=121.02 Aligned_cols=110 Identities=22% Similarity=0.213 Sum_probs=81.1
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-----c----------------ccCCcCceEEEEEEcCEEEEEEEcCCCCCchhc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-----T----------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-----~----------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (189)
+|+++|++|+|||||+++++...-. . ...+.......+.+.+..+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999743211 0 012334444567778899999999999888888
Q ss_pred hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
+..+++.+|++++|+|+++...... ...|.... . .+.|.++++||+|....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~-~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFAD-E---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHH-H---cCCCEEEEEECCccCCC
Confidence 8888999999999999987554432 22233322 2 46899999999998753
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=130.23 Aligned_cols=158 Identities=20% Similarity=0.160 Sum_probs=100.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC-------Cc-----cc-------ccCCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG-------EI-----VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~-------~~-----~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
+..++|+++|++++|||||+++|++. .+ .. ..-|.+.....+..++..+.++||||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 55699999999999999999999862 11 00 0113333333344466789999999998887
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCC-Hh----HHHhhhCCcccc
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLR 149 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (189)
......+..+|++++|+|+.+...- .....+.. +.. .++|.+ +++||+|+.+..+ .+ ++...+....+.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~-~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-hHHHHHHH-HHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 7777778899999999999763221 11222322 222 356755 6899999974322 12 222222211111
Q ss_pred CcceEEEEcccCCCC----------ChHHHHHHHHHHH
Q 029675 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (189)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~ 177 (189)
...++++.+|+.+|. ++.++++.+.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 234788999999984 5666666666543
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-17 Score=126.30 Aligned_cols=156 Identities=21% Similarity=0.187 Sum_probs=113.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccC---CcCceEEEEEEc---CEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~---t~~~~~~~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
+..-|.++|+...|||||++.+.........+ |..+--+++... .-.+.++|||||+-|..++.....-+|.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 45678999999999999999999887765433 322333444443 358999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc----cCcceEEEEcccCCCCC
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATSGEG 165 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 165 (189)
+|+++++.-..+.. .-...++. .+.|++++.||+|..+ .++..+..++....+ ......++++||++|+|
T Consensus 84 LVVa~dDGv~pQTi--EAI~hak~---a~vP~iVAiNKiDk~~-~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGVMPQTI--EAINHAKA---AGVPIVVAINKIDKPE-ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCcchhHH--HHHHHHHH---CCCCEEEEEecccCCC-CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 99999864222221 12222222 6899999999999984 344554444443333 23557899999999999
Q ss_pred hHHHHHHHHHHH
Q 029675 166 LYEGLDWLSNNI 177 (189)
Q Consensus 166 i~~~~~~l~~~~ 177 (189)
++++++.+.-+.
T Consensus 158 i~eLL~~ill~a 169 (509)
T COG0532 158 IDELLELILLLA 169 (509)
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-17 Score=116.95 Aligned_cols=108 Identities=18% Similarity=0.139 Sum_probs=77.0
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccc------------------cC----CcCceEEEEE-----EcCEEEEEEEcCCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTT------------------IP----TIGFNVETVE-----YKNISFTVWDVGGQ 71 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~------------------~~----t~~~~~~~~~-----~~~~~~~i~D~~g~ 71 (189)
+|+++|++++|||||+++|+....... .. +.......+. ...+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986432211 00 1111112222 23478999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
.++......++..+|++++|+|+.+..++.. ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888889999999999999987655432 233333322 358999999999975
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-17 Score=134.19 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=89.5
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC--------------cc-------cccCCcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
..+..+|+++|+.++|||||+++|+... .. ....|+......+.+.+..+++|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 3567899999999999999999997521 00 12335566666788889999999999999
Q ss_pred CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
++...+..+++.+|++++|+|.++....+.. ..|..... .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 9999999999999999999999876655443 33333322 47899999999998754
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=119.48 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=107.4
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccc---cCCcC-ceEEEEEEcCEEEEEEEcCCCCC------------chhc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG-FNVETVEYKNISFTVWDVGGQDK------------IRPL 77 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~---~~t~~-~~~~~~~~~~~~~~i~D~~g~~~------------~~~~ 77 (189)
..+.++|+|+|.||+|||||.|.+++.+.... ..|+. .....+.-+...+.++||||--. +...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 46789999999999999999999999986632 33333 33344556788999999999321 1111
Q ss_pred hhhhccCCCEEEEEEECCCcccHHH--HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC---------------CC--HhH
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA---------------MN--AAE 138 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---------------~~--~~~ 138 (189)
....+.++|.++.|+|+++...... ....+..+ .++|-+++.||.|.... .. ..+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 2334568999999999986432221 12223333 46888999999996532 01 223
Q ss_pred HHhhhCCccc-----cCcce----EEEEcccCCCCChHHHHHHHHHHHhhccc
Q 029675 139 ITDKLGLHSL-----RQRHW----YIQSTCATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 139 ~~~~~~~~~~-----~~~~~----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
+.+.+...-. ..+++ .+|.+||+.|+||+++.+++..++...-+
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW 275 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPW 275 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCC
Confidence 3333321110 00122 47889999999999999999988766543
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-17 Score=118.66 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=114.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc--cc-cCCcCceEEEEEEcCEEEEEEEcCCCCC--ch------hc-hhhhcc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQDK--IR------PL-WRHYFQ 83 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~--~~------~~-~~~~~~ 83 (189)
.-..|+|.|.||+|||||++++.+.+.. .+ ..|-++.+.++..+...+|++||||--+ .. .. ..+.-.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 4588999999999999999999988754 33 4477888889999999999999999321 11 11 222223
Q ss_pred CCCEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccC
Q 029675 84 NTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
-.++++|++|++..+ +.+.....|.++-.. .+.|+++|.||.|..+....+++.......... ....+++.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~----~~~~~~~~ 319 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGE----EPLKISAT 319 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhccc----cccceeee
Confidence 488999999998654 556666666666554 458999999999999776666655443332221 24468888
Q ss_pred CCCChHHHHHHHHHHHhhc
Q 029675 162 SGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 162 ~~~~i~~~~~~l~~~~~~~ 180 (189)
.+.+++.+.+.+...+.+.
T Consensus 320 ~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 320 KGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ehhhHHHHHHHHHHHhhch
Confidence 9999998888887775544
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-18 Score=116.81 Aligned_cols=124 Identities=28% Similarity=0.452 Sum_probs=79.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEE---cCEEEEEEEcCCCCCchhchhhh---ccCCCEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHY---FQNTQGLI 89 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~---~~~~d~~i 89 (189)
+.-.|+++|++|+|||+|+.+|..+....+..+...+. .+.. .+..+.++|+||+++.+...... ...+.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 34578999999999999999999997765555543333 2222 34589999999999988765554 78899999
Q ss_pred EEEECCC-cccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHH
Q 029675 90 FVVDSND-RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEIT 140 (189)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~ 140 (189)
||+|.+. +..+....+.+..++.... ...+|++++.||.|+........+.
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik 134 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIK 134 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHH
Confidence 9999873 4456666666666555321 2579999999999998755444443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=116.75 Aligned_cols=157 Identities=13% Similarity=0.092 Sum_probs=96.1
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCce-----EEEEEEc-CEEEEEEEcCCCCCchhchh-----hhccC
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-----VETVEYK-NISFTVWDVGGQDKIRPLWR-----HYFQN 84 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~-----~~~~~~~-~~~~~i~D~~g~~~~~~~~~-----~~~~~ 84 (189)
+++|+++|++|+|||||+|.+.+..... ..++++.. ...+... ...+.+|||||......... ..+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4789999999999999999999865432 22222211 1111111 23789999999754322222 22567
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCccc---c---
Q 029675 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSL---R--- 149 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~---~--- 149 (189)
+|++++|.+ ..+......+...+.. ...|+++|+||+|+..... .+++.+.+..... .
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 899888843 2345555555555554 3678999999999843211 1222221111111 0
Q ss_pred CcceEEEEcccC--CCCChHHHHHHHHHHHhhc
Q 029675 150 QRHWYIQSTCAT--SGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 150 ~~~~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~ 180 (189)
.....++-+|+. .+.++..+.+.+...+-+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 122357789988 5789999999999888754
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.7e-17 Score=125.12 Aligned_cols=146 Identities=19% Similarity=0.130 Sum_probs=93.7
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC------------ccc-------ccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IVT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~------------~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
.++.++|+++|+.++|||||+++|++.. ..+ ...|.+.....+..++..+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4667999999999999999999997420 000 112444444445456678999999999998
Q ss_pred hhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeE-EEEEeCCCCCCCCC-Hh----HHHhhhCCccc
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPNAMN-AA----EITDKLGLHSL 148 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (189)
..........+|++++|+|+.+....+ ....+..+ .. .++|. ++++||+|+.+..+ .+ ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 877777778899999999997632221 12222222 22 24554 57899999875322 11 22222222222
Q ss_pred cCcceEEEEcccCCCC
Q 029675 149 RQRHWYIQSTCATSGE 164 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~ 164 (189)
....++++.+|+.+|.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 2223678999999875
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=127.79 Aligned_cols=151 Identities=21% Similarity=0.289 Sum_probs=113.3
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchh------chhhhc--cC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYF--QN 84 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 84 (189)
+..+++++|+||+|||||+|++.+.... .+-| |.+.....+..++..+++.|.||-..... ....++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 4567999999999999999999987644 5555 56666677888888999999999543322 223333 36
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCccccCcceEEEEccc
Q 029675 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+|+++.|+|+++.+ .......+++. .+.|++++.|+.|.... .+.+++.+.++.+ ++++||
T Consensus 82 ~D~ivnVvDAtnLe---RnLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP--------Vv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLE---RNLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVP--------VVPTVA 146 (653)
T ss_pred CCEEEEEcccchHH---HHHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCC--------EEEEEe
Confidence 89999999998743 33333334433 57899999999997543 4667788877764 889999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
++|+|++++...+.+....+.
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 147 KRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred ecCCCHHHHHHHHHHhccccc
Confidence 999999999999987655444
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-16 Score=125.51 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=82.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc--CCcc----------------cc-------cCCcCceEEEEEEcCEEEEEEEcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV----------------TT-------IPTIGFNVETVEYKNISFTVWDVG 69 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~--~~~~----------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~ 69 (189)
.+..+|+++|++++|||||+++|+. +... +. ..++......+.++++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4568999999999999999999963 1110 00 012223334577788999999999
Q ss_pred CCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
|+.+|......+++.+|++|+|+|+.+.-.. ....++... .. .++|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~~---~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-RL---RDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-Hh---cCCCEEEEEECCccccc
Confidence 9999988777888999999999999764322 223333332 22 57999999999998653
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-17 Score=127.43 Aligned_cols=148 Identities=20% Similarity=0.140 Sum_probs=96.4
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcc-----------------c--ccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-----------------T--TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~-----------------~--~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
+...++|+++|++++|||||+++|++..-. + ...|.+.....+..++..+.++||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 456699999999999999999999864110 0 011223333344556778999999999888
Q ss_pred hhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCccc
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSL 148 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (189)
.......+..+|++++|+|+...- .........++.. .++| +++++||+|+.+..+ .+ ++...+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~--~~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGP--MPQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 777777788999999999997532 2222222233332 3567 778999999975322 12 22233222222
Q ss_pred cCcceEEEEcccCCCCCh
Q 029675 149 RQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i 166 (189)
....++++.+|+.+|.++
T Consensus 164 ~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 164 PGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCcceEEEcchhhcccc
Confidence 223468999999998743
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=129.42 Aligned_cols=150 Identities=16% Similarity=0.140 Sum_probs=101.2
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCc---------------------------cc-------ccCCcCceEEEEEEc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI---------------------------VT-------TIPTIGFNVETVEYK 59 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~---------------------------~~-------~~~t~~~~~~~~~~~ 59 (189)
.+..++|+++|+.++|||||+.+|+...- .+ ..-|++..+..+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35678999999999999999998863110 00 011444445556667
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHH-------HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV-------EARDELHRMLNEDELRDA-VLLVFANKQDLP 131 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~ 131 (189)
+..+.++|+||+++|.......++.+|++|+|+|+.+. .|+ .....+. +... .++ ++++++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEcccCC
Confidence 88999999999999999999999999999999999862 232 2222222 2222 345 578899999976
Q ss_pred CC----CCH----hHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 132 NA----MNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 132 ~~----~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
+. ... +++...+....+....+.|+++|+++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 21 112 22333332223333357899999999999854
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-17 Score=126.97 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=94.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCc--cc----------------------------------ccCCcCceEEEEEEcCE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEI--VT----------------------------------TIPTIGFNVETVEYKNI 61 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~--~~----------------------------------~~~t~~~~~~~~~~~~~ 61 (189)
++|+++|++++|||||+.+|+...- .. ...|++..+..+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999964220 00 00134444455666778
Q ss_pred EEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 029675 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEI 139 (189)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~ 139 (189)
.+.++||||+++|.......+..+|++++|+|+.....-+. .....+.... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt--~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT--RRHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc--HHHHHHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999987776777889999999999875422111 1111122221 2346899999999875321 1222
Q ss_pred HhhhCC--ccccCcceEEEEcccCCCCChHH
Q 029675 140 TDKLGL--HSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
...+.. .......+.++++||++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 00111245689999999999986
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=129.98 Aligned_cols=152 Identities=17% Similarity=0.128 Sum_probs=98.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCc--cc------------c----------------------cCCcCceEEEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPTIGFNVETVE 57 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~--~~------------~----------------------~~t~~~~~~~~~ 57 (189)
.+..++|+++|++++|||||+.+|+...- .. . ..|++..+..+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46679999999999999999999974321 00 0 012334444455
Q ss_pred EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-
Q 029675 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN- 135 (189)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~- 135 (189)
.++..+.++||||++.|.......+..+|++++|+|+...-.- +.....+...+ ...|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-----g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-----GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-----CCCceEEEEEeeccccchhH
Confidence 6778999999999998876666667999999999998753211 11111111221 1257899999999874321
Q ss_pred -HhHHHhhhCC--cccc-CcceEEEEcccCCCCChHHHH
Q 029675 136 -AAEITDKLGL--HSLR-QRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 136 -~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
..++...+.. .... .....++++||++|.|+.++-
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 2333332211 0000 124678999999999998653
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-17 Score=133.06 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=102.2
Q ss_pred HHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCc--cc------------c----------------------cCC
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPT 48 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~--~~------------~----------------------~~t 48 (189)
+...+........++|+++|++++|||||+++|+...- .. . ..|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 34455666677889999999999999999999975321 10 0 012
Q ss_pred cCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 029675 49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (189)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (189)
++..+..+..++..+.++||||++.|.......+..+|++++|+|+..... ........++... ...++++++||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~--~~t~e~~~~~~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL--TQTRRHSFIASLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc--ccCHHHHHHHHHh--CCCeEEEEEEec
Confidence 333344555677889999999999887666667889999999999975321 1111111122211 236789999999
Q ss_pred CCCCCC--CHhHHHhhhCC--ccccCcceEEEEcccCCCCChHH
Q 029675 129 DLPNAM--NAAEITDKLGL--HSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 129 D~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|+.+.. ..+++...+.. .........++.+||++|.|+.+
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 987522 12223222210 00011234688999999999984
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=124.31 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=100.6
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc------------c-------cccCCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
+..++|+++|++++|||||+++|++... . ....|.+.....+..++..+.++||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 5679999999999999999999986210 0 01113333334444567789999999998887
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCC-Hh----HHHhhhCCcccc
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLR 149 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (189)
......+..+|++++|+|+.+.. ......+..++.. .+.|.+ +++||+|+.+..+ .+ ++...+....+.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~--~~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCC--chHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 77777788999999999997542 2222222233332 357765 6899999975322 11 222233222222
Q ss_pred CcceEEEEcccCCCC----------ChHHHHHHHHHH
Q 029675 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNN 176 (189)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~ 176 (189)
...++++.+||+++. ++..+++.+.+.
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 234678899999875 455555555543
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.1e-17 Score=127.44 Aligned_cols=147 Identities=20% Similarity=0.154 Sum_probs=97.3
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC------cc---------c----ccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------IV---------T----TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~------~~---------~----~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
....++|+++|++++|||||+++|++.. .. . ...|.+.....+..++..+.++|+||++.|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4557999999999999999999998521 00 0 011333334445567789999999999999
Q ss_pred hhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCccc
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSL 148 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (189)
.......+..+|++++|+|+.+...- .....+.. +.. .++| +++++||+|+.+..+ .+ ++...+....+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~-~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILL-AKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHH-HHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 88878888899999999998754321 22233333 332 3566 788999999976322 22 22222222222
Q ss_pred cCcceEEEEcccCCCCC
Q 029675 149 RQRHWYIQSTCATSGEG 165 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~ 165 (189)
....++++.+|+.++.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 33457889999988753
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=115.50 Aligned_cols=146 Identities=33% Similarity=0.454 Sum_probs=103.2
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC-------cccccCCcCceEEEEEEcCE-EEEEEEcCCCCC-------chhchhhhcc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNI-SFTVWDVGGQDK-------IRPLWRHYFQ 83 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~-~~~i~D~~g~~~-------~~~~~~~~~~ 83 (189)
.+.++|-||+|||||++.+...+ |.+..|.++ ++.+++. .+.+-|.||--. ........+.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG----~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG----TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc----eeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 57899999999999999998765 334455555 4556554 499999999421 1112333456
Q ss_pred CCCEEEEEEECCCc---ccHHHHHHHHHHH-hcCCCCCCCeEEEEEeCCCCCCCC-CH-hHHHhhhCCccccCcceEEEE
Q 029675 84 NTQGLIFVVDSNDR---DRVVEARDELHRM-LNEDELRDAVLLVFANKQDLPNAM-NA-AEITDKLGLHSLRQRHWYIQS 157 (189)
Q Consensus 84 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~-~~~~~~~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 157 (189)
.|+.++||+|++.+ ..|+.....+.++ ..+..+.+.|.++|.||.|+.+.. +. +++.+.+... .+++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~p 346 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVP 346 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEE
Confidence 79999999999987 6677666544443 334555789999999999996332 21 4444444332 5889
Q ss_pred cccCCCCChHHHHHHHHH
Q 029675 158 TCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~ 175 (189)
+||++++|++++++.+-+
T Consensus 347 vsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 347 VSAKSGEGLEELLNGLRE 364 (366)
T ss_pred eeeccccchHHHHHHHhh
Confidence 999999999999887754
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=113.50 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=77.6
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCc--c----------cc-------cCCcCceEEEEEEc----------CEEEEEEEcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEI--V----------TT-------IPTIGFNVETVEYK----------NISFTVWDVG 69 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~--~----------~~-------~~t~~~~~~~~~~~----------~~~~~i~D~~ 69 (189)
+|+++|+.++|||||+++|+...- . +. ..|+......+.+. ++.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999975321 0 00 01222222222222 6889999999
Q ss_pred CCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
|+..|......+++.+|++++|+|+.+....+. ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999987654433 233333332 367899999999975
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=99.68 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=70.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc--cc--cCCcCceEEEEEEcCEEEEEEEcCCCCCc---------hhchhhhccCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQNT 85 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~ 85 (189)
+|+++|.+|+|||||+|+|.+.... .. ..|....+..+...+..+.++||||-... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986432 22 23444445566778889999999996432 11133334789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 127 (189)
|++++|+|..++. ......+.+.++ .++|+++|+||
T Consensus 81 d~ii~vv~~~~~~--~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPI--TEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHS--HHHHHHHHHHHH----TTSEEEEEEES
T ss_pred CEEEEEEECCCCC--CHHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999976631 222222322222 58999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-16 Score=121.56 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=109.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCC-----------ccc---ccC----CcCceEEEEEEcC---EEEEEEEcCCCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----------IVT---TIP----TIGFNVETVEYKN---ISFTVWDVGGQDK 73 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~-----------~~~---~~~----t~~~~~~~~~~~~---~~~~i~D~~g~~~ 73 (189)
.+-.++.+|.+...|||||.++|+... +.+ .+. |+......+-+.+ +.++++|||||-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 567899999999999999999996422 111 111 2222223344444 9999999999999
Q ss_pred chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcce
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
|.......+..|+++|+|+|++..-.-+.....+..+- .+..+|.|+||.|++... ++++..+.... +....-
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad-pe~V~~q~~~l-F~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD-PERVENQLFEL-FDIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC-HHHHHHHHHHH-hcCCcc
Confidence 99998888899999999999986433333333333332 477899999999998653 33333322211 111222
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHhhc
Q 029675 154 YIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
.++.+||++|.|++++++.+++.+-..
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 577899999999999999998876543
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-16 Score=121.76 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=117.7
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCcccccC---CcCceEEEEEE-cCEEEEEEEcCCCCCchhchhhhccCCCEE
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~---t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (189)
...+.--|-++|+...|||||++.|.+..+..... |..+--+.+.. .+..++|.||||+.-|..|+.....-+|++
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 34466778999999999999999999888764332 22222233333 557999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcccc----CcceEEEEcccCCCC
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----QRHWYIQSTCATSGE 164 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~ 164 (189)
++|+..+|.-..+. .+.+++....+.|+++.+||+|.. ..+++.+..++....+. ..+.+++++||++|+
T Consensus 229 VLVVAadDGVmpQT-----~EaIkhAk~A~VpiVvAinKiDkp-~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 229 VLVVAADDGVMPQT-----LEAIKHAKSANVPIVVAINKIDKP-GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEEccCCccHhH-----HHHHHHHHhcCCCEEEEEeccCCC-CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 99999976422211 122222333789999999999976 44566666655444432 356899999999999
Q ss_pred ChHHHHHHHHHHHh
Q 029675 165 GLYEGLDWLSNNIA 178 (189)
Q Consensus 165 ~i~~~~~~l~~~~~ 178 (189)
|++.+-+.+.-++.
T Consensus 303 nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 303 NLDLLEEAILLLAE 316 (683)
T ss_pred ChHHHHHHHHHHHH
Confidence 99999988765543
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=123.90 Aligned_cols=151 Identities=19% Similarity=0.158 Sum_probs=101.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC--c-------------------------cc-------ccCCcCceEEEEEEc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------VT-------TIPTIGFNVETVEYK 59 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~--~-------------------------~~-------~~~t~~~~~~~~~~~ 59 (189)
....++|+++|+.++|||||+.+|+... . .+ ...|++..+..+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 3567899999999999999999986511 0 00 012444445556677
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc---cH---HHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 132 (189)
+..+.++||||+.+|.......+..+|++++|+|+.... .+ .....-+. ++.. .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH---cCCCeEEEEEEcccccc
Confidence 889999999999999888888889999999999997532 11 11122222 2222 3444 789999999532
Q ss_pred ----CCCHhHHH----hhhCCccccCcceEEEEcccCCCCChHH
Q 029675 133 ----AMNAAEIT----DKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 133 ----~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
....+++. ..+....+....++++.+|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 12233333 3333333333457899999999999964
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=120.58 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=100.6
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcC------Cc------cc-------ccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLG------EI------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~------~~------~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
....++|+++|++++|||||+++|.+. .. .+ ...|++.....+..++..+.++||||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456799999999999999999999632 10 00 112444444555556778999999999988
Q ss_pred hhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-HhHHH----hhhCCccc
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEIT----DKLGLHSL 148 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~~~~----~~~~~~~~ 148 (189)
.......+..+|++++|+|..+.. .........++.. .++| +++++||+|+.+... .+.+. ..+....+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 777666777899999999987542 2222223333333 4677 578999999975322 11122 22211112
Q ss_pred cCcceEEEEcccC---CCCC-------hHHHHHHHHHHH
Q 029675 149 RQRHWYIQSTCAT---SGEG-------LYEGLDWLSNNI 177 (189)
Q Consensus 149 ~~~~~~~~~~Sa~---~~~~-------i~~~~~~l~~~~ 177 (189)
....++++.+|+. +|.| +.++++.+.+.+
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2234678888875 4555 566666665543
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=115.21 Aligned_cols=135 Identities=25% Similarity=0.394 Sum_probs=103.3
Q ss_pred CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCC
Q 029675 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (189)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (189)
||+|+....+..++..+.+||.+|+...+..|..++.+++++|+|+|+++. ..+......+..++.....
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 355777777888899999999999999999999999999999999999863 3577778888888888777
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHhHHHh----hhCCccc--cCcceEEEEcccCCCCChHHHHHHH
Q 029675 117 RDAVLLVFANKQDLPNA-----------------MNAAEITD----KLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWL 173 (189)
Q Consensus 117 ~~~p~ivv~nK~D~~~~-----------------~~~~~~~~----~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (189)
.+.|+++++||.|+..+ .+.+.+.. .+....- ....+....|+|.+-.+++.+|+.+
T Consensus 250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v 329 (342)
T smart00275 250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV 329 (342)
T ss_pred cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence 88999999999997531 11112111 1111111 1245667778999999999999998
Q ss_pred HHHHhhcc
Q 029675 174 SNNIASKV 181 (189)
Q Consensus 174 ~~~~~~~~ 181 (189)
.+.+.++.
T Consensus 330 ~~~I~~~~ 337 (342)
T smart00275 330 KDIILQRN 337 (342)
T ss_pred HHHHHHHH
Confidence 88887653
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=114.55 Aligned_cols=135 Identities=27% Similarity=0.413 Sum_probs=103.3
Q ss_pred CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCC
Q 029675 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (189)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (189)
||+|+....+..++..+.+||++|+...+..|..++.+++++|+|+|+++. ..+.+....+..++.....
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 456777777888899999999999999999999999999999999999874 4577777888888888777
Q ss_pred CCCeEEEEEeCCCCCCC------------------CCHhHHHhhhCCccc-----cCcceEEEEcccCCCCChHHHHHHH
Q 029675 117 RDAVLLVFANKQDLPNA------------------MNAAEITDKLGLHSL-----RQRHWYIQSTCATSGEGLYEGLDWL 173 (189)
Q Consensus 117 ~~~p~ivv~nK~D~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (189)
.+.|+++++||.|+..+ .+.++....+...+. ....+....++|.+-++++.+|+.+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 88999999999996431 112222211111100 1245666779999999999999999
Q ss_pred HHHHhhcc
Q 029675 174 SNNIASKV 181 (189)
Q Consensus 174 ~~~~~~~~ 181 (189)
.+.+..+.
T Consensus 307 ~~~i~~~~ 314 (317)
T cd00066 307 KDIILQNN 314 (317)
T ss_pred HHHHHHHH
Confidence 98887653
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-15 Score=111.08 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=112.4
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc---cccCCcCceEEEEEEc-CEEEEEEEcCCCC---------Cchhchhhh
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQD---------KIRPLWRHY 81 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~g~~---------~~~~~~~~~ 81 (189)
+.-..|.++|-.|+|||||+|.|.+.... ....|.+.....+... +..+.+-||-|-- -|++... .
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE-E 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE-E 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH-H
Confidence 45588999999999999999999976643 2355666666667776 5789999999942 2333333 3
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCccccCcceEEEEccc
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
...+|+++.|+|+++|.- .........++.+.....+|+++|.||.|+..... ...+.... + ..+.+||
T Consensus 269 ~~~aDlllhVVDaSdp~~-~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~--------~-~~v~iSA 338 (411)
T COG2262 269 VKEADLLLHVVDASDPEI-LEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS--------P-NPVFISA 338 (411)
T ss_pred hhcCCEEEEEeecCChhH-HHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC--------C-CeEEEEe
Confidence 357999999999999853 44444455566655556799999999999775533 11111111 1 3567999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
++|.|++.+.+.|.+.+....
T Consensus 339 ~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 339 KTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred ccCcCHHHHHHHHHHHhhhcc
Confidence 999999999999999887554
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-15 Score=123.98 Aligned_cols=116 Identities=20% Similarity=0.130 Sum_probs=85.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC--c------c------c-------ccCCcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--I------V------T-------TIPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~--~------~------~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
..+-.+|+++|++++|||||+++|+... . . + ...|+......+.+++..+.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3456799999999999999999996421 1 0 0 1124445556677889999999999999
Q ss_pred CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
++.......++.+|++++|+|..+....+. ...+.. +.. .+.|+++++||+|+....
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~-~~~---~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQ-ANR---YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHH-HHH---cCCCEEEEEECCCCCCCC
Confidence 888888889999999999999986543332 233333 222 468999999999987643
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=120.23 Aligned_cols=160 Identities=15% Similarity=0.136 Sum_probs=102.5
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCccc------ccCCcCceEEEE-----------------EE-------------
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVETV-----------------EY------------- 58 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~------~~~t~~~~~~~~-----------------~~------------- 58 (189)
...++|.++|+.++|||||+..|.+..... ..-|++.-+... ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 456899999999999999999998643211 011222111110 00
Q ss_pred ---cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 59 ---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 59 ---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
....+.++|+||++.|.......+..+|++++|+|+.+.. ..+ ....+ .++... .-.++++++||+|+.+..
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~q-T~ehl-~i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQ-TSEHL-AAVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchh-hHHHH-HHHHHc--CCCcEEEEEecccccCHH
Confidence 0246899999999999888777888999999999998631 111 11222 222211 235689999999997643
Q ss_pred CHhHHHhhhCCc--cccCcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 135 NAAEITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 135 ~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
..++...++... ......+.++.+||++|+|++++++.|.+.+.
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 322222221110 00123567999999999999999999887554
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-16 Score=117.63 Aligned_cols=155 Identities=19% Similarity=0.199 Sum_probs=103.8
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCC--c----------------------c---c-------ccCCcCceEEEEEEcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I----------------------V---T-------TIPTIGFNVETVEYKN 60 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~--~----------------------~---~-------~~~t~~~~~~~~~~~~ 60 (189)
..+++++|+|++++|||||+-+|+.+. + . + ..-|++.....+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 467999999999999999998886421 0 0 0 0114445555566677
Q ss_pred EEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc---cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--C
Q 029675 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--N 135 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~ 135 (189)
+.+.|+|+||+.+|-.........+|+.|+|+|..+.+ +|...-+..+.++....+.-..+||++||+|+.+.. .
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 89999999999999999888899999999999998653 111111111111111111245689999999998743 2
Q ss_pred HhHHHhhhC----CccccCcceEEEEcccCCCCChHHH
Q 029675 136 AAEITDKLG----LHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 136 ~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
.+++..... ...+...++.|+++|+..|.|+.+.
T Consensus 165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 344443332 2222233578999999999998653
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-15 Score=104.96 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=99.4
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc-----cCCcCceEEEEEEcCEEEEEEEcCCCCCchh-------c----hhhh
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP-------L----WRHY 81 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~----~~~~ 81 (189)
++|+++|.+|+|||||+|++++...... ..|...........+..+.++||||-..... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998875421 2355555666667888999999999543311 1 1222
Q ss_pred ccCCCEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CccccCc--ceEE
Q 029675 82 FQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQR--HWYI 155 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~--~~~~ 155 (189)
...+|++++|+++.+. .......+++...+... .-.+++++.|+.|.......++...... ....+.+ .+..
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 4578999999998752 12223334444443321 1257899999999765443333322111 0111111 1222
Q ss_pred EEc---ccCCCCChHHHHHHHHHHHhh
Q 029675 156 QST---CATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 156 ~~~---Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
+.- ++..+.+++++++.+.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 222 246677899999988888776
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=107.05 Aligned_cols=152 Identities=22% Similarity=0.180 Sum_probs=103.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc--ccc-CCcCceEEEEEEcCEEEEEEEcCCCC-------CchhchhhhccCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTI-PTIGFNVETVEYKNISFTVWDVGGQD-------KIRPLWRHYFQNT 85 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~~ 85 (189)
-.-+++++|.|++|||||+++|.+.+.. ++. .|....-.-+.+++..+|+.|+||-- .......+..++|
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 3468999999999999999999886522 222 22222223478899999999999731 1224466778999
Q ss_pred CEEEEEEECCCccc-HHHHHHHHHHH----------------------------------------hcCCC---------
Q 029675 86 QGLIFVVDSNDRDR-VVEARDELHRM----------------------------------------LNEDE--------- 115 (189)
Q Consensus 86 d~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~~~~--------- 115 (189)
|++++|+|+..... .+-+...+... +.+..
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999985543 33333322221 11100
Q ss_pred ---------------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 116 ---------------LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 116 ---------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
..-+|.+++.||.|+....+.+.+.+.. ..+.+||..+.|++++.+.+-+.+
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhh
Confidence 0236789999999998754444444433 366799999999999999988775
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-15 Score=115.14 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=110.8
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCC-----------ccc---ccC----CcCceEEEEEE-----cCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----------IVT---TIP----TIGFNVETVEY-----KNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~-----------~~~---~~~----t~~~~~~~~~~-----~~~~~~i~D~~g~ 71 (189)
.+-.++.++.+-..|||||.+|++... +.+ ... |+...-.++.+ +.+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 345788999999999999999997522 111 111 22222222222 4589999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCccc
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL 148 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~ 148 (189)
-+|.-.....+..|.++++|+|+++.-.-+.+.+.+..+- .+.-++-|+||.|++..+. ..++.+.+++...
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~ 161 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 161 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc
Confidence 9998887777888999999999986543344444444442 3677899999999986543 3445555555533
Q ss_pred cCcceEEEEcccCCCCChHHHHHHHHHHHhhcc
Q 029675 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
..+.+|||+|.||+++++.+++++-...
T Consensus 162 -----dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 162 -----DAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred -----hheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 3567999999999999999998875443
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-15 Score=112.03 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=54.2
Q ss_pred EEEEcCCCCChHHHHHhHhcCCcc-------cccCCcCceEEEE-------------------E-EcCEEEEEEEcCCC-
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETV-------------------E-YKNISFTVWDVGGQ- 71 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~-------~~~~t~~~~~~~~-------------------~-~~~~~~~i~D~~g~- 71 (189)
|+++|.|++|||||+++|.+.... +..|+.+..+... + ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987632 2234444333211 1 13368999999997
Q ss_pred ---CCchhchhh---hccCCCEEEEEEECCC
Q 029675 72 ---DKIRPLWRH---YFQNTQGLIFVVDSND 96 (189)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~~i~v~d~~~ 96 (189)
+.++.+... .++++|++++|+|...
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 344444333 5889999999999973
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-15 Score=118.30 Aligned_cols=113 Identities=23% Similarity=0.273 Sum_probs=81.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc--CCcc----------------cc---c----CCcCceEEEEEEcCEEEEEEEcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV----------------TT---I----PTIGFNVETVEYKNISFTVWDVG 69 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~--~~~~----------------~~---~----~t~~~~~~~~~~~~~~~~i~D~~ 69 (189)
.+..+|+++|++++|||||+++|+. +... +. . .+.......+++.+..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5678999999999999999999853 1110 00 0 11222334567788999999999
Q ss_pred CCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
|+.+|.......++.+|++|+|+|+.+. +......+...... .+.|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 9998888777788999999999999763 22222222233333 4789999999999864
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=110.71 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=108.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCC-c----hhc----hhhh
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK-I----RPL----WRHY 81 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~-~----~~~----~~~~ 81 (189)
+..++|+++|+||+|||||+|.|.+.... +..| |.+.....++..++++.+.||+|-.. - +.+ ...-
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 56799999999999999999999998865 4333 55566677888999999999999543 1 111 2334
Q ss_pred ccCCCEEEEEEECCC--cccHHHHHHHHHHHhc-----CCCCCCCeEEEEEeCCCCCCCC-CHhH----HHhhhCCcccc
Q 029675 82 FQNTQGLIFVVDSND--RDRVVEARDELHRMLN-----EDELRDAVLLVFANKQDLPNAM-NAAE----ITDKLGLHSLR 149 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~-----~~~~~~~p~ivv~nK~D~~~~~-~~~~----~~~~~~~~~~~ 149 (189)
+..+|++++|+|+.. -++-..+...+...-. ...+.+.|++++.||.|+.... +... ..+..+..
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~--- 422 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRS--- 422 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCc---
Confidence 467999999999942 2222222222222211 1223458999999999987651 1111 11111111
Q ss_pred CcceEEEEcccCCCCChHHHHHHHHHHHhhccc
Q 029675 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
..-...++|+++++|++++.+.+.+.+.....
T Consensus 423 -~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 423 -VFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred -ccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 11134569999999999999999988877654
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=106.44 Aligned_cols=155 Identities=26% Similarity=0.305 Sum_probs=101.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC-------cccccCCcCceEEEEEEcCEEEEEEEcCCCC-------CchhchhhhccC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNISFTVWDVGGQD-------KIRPLWRHYFQN 84 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~ 84 (189)
.|.++|-|++|||||++.+...+ |.+..|..++... .....|.+-|.||-- .........+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 46799999999999999998755 3344555555222 345579999999832 122223344567
Q ss_pred CCEEEEEEECCCccc---HHH---HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCccccCcceEEEE
Q 029675 85 TQGLIFVVDSNDRDR---VVE---ARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQS 157 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s---~~~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
|.+++.|+|++..+. .+. +...+..+ ...+.++|.++|+||+|+... ...+++...+...... ...++
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~--~~~~~- 312 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGW--EVFYL- 312 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHh--hHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCC--Cccee-
Confidence 999999999985442 333 33333333 233468999999999996543 3444444444322111 11122
Q ss_pred cccCCCCChHHHHHHHHHHHhhcc
Q 029675 158 TCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
+|+.+++|++++...+.+.+.+..
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 313 ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHHhh
Confidence 999999999999999988887764
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-14 Score=116.76 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=78.9
Q ss_pred EcCCCCChHHHHHhHhcCCc--------------c-------cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhh
Q 029675 23 VGLDAAGKTTILYKLKLGEI--------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (189)
Q Consensus 23 iG~~~~GKssli~~l~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 81 (189)
+|++++|||||+++|+...- . ....|++.....+.+.++.+.+|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999954210 0 01224555556777889999999999999888888888
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
++.+|++++|+|+++....... ..+..... .+.|+++++||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 9999999999999876544332 33333322 46899999999998753
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=119.97 Aligned_cols=116 Identities=20% Similarity=0.115 Sum_probs=85.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC-----c---c-------------cccCCcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE-----I---V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~-----~---~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
..+-.+|+++|++++|||||+++|+... . . ...-|+.....++.+++..+.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3456789999999999999999996421 0 0 11125555567788889999999999998
Q ss_pred CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
.+...+...++.+|++++|+|..+.-.-+. ...+.. ... .+.|+++++||+|+.+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~-~~~---~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQ-ADK---YGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHH-HHH---cCCCEEEEEECCCCCCCC
Confidence 888888889999999999999876432221 222333 332 468899999999988643
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=107.91 Aligned_cols=112 Identities=15% Similarity=0.239 Sum_probs=70.8
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcccc-----------cCCcCceEEE--EEEcC--EEEEEEEcCCCCCchh-----
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRP----- 76 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~----- 76 (189)
.++|+++|++|+|||||+|+|.+..+... .+|....... +...+ .++.+|||||......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998876422 2333333322 33333 6799999999432211
Q ss_pred ---------------------chhhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 77 ---------------------LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 77 ---------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
.+...+. .+|+++|+++.+. ..+......+...+. ...|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence 0112222 4788888888764 223333222333333 25889999999998654
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-14 Score=117.34 Aligned_cols=116 Identities=18% Similarity=0.140 Sum_probs=83.6
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhc--CC------cc-------------cccCCcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKL--GE------IV-------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~--~~------~~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
..+-.+|+++|++++|||||+++|+. +. .. ....|++.....+.+.+..+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34567999999999999999999963 11 00 01124444456677889999999999998
Q ss_pred CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
+|.......++.+|++++|+|....-..+. ...+... .. .+.|+++++||+|+.+..
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~-~~---~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQA-DK---YKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHH-HH---cCCCEEEEEECCCCCCCC
Confidence 887777778889999999999875422222 2223333 32 468899999999987644
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.4e-14 Score=118.06 Aligned_cols=142 Identities=20% Similarity=0.192 Sum_probs=92.1
Q ss_pred CChHHHHHhHhcCCcccccC---CcCceEEEEEEcC------------------EEEEEEEcCCCCCchhchhhhccCCC
Q 029675 28 AGKTTILYKLKLGEIVTTIP---TIGFNVETVEYKN------------------ISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (189)
Q Consensus 28 ~GKssli~~l~~~~~~~~~~---t~~~~~~~~~~~~------------------~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (189)
++||||++++.+.......+ |..+-...+.... -.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999998877654322 3222223333221 12899999999999988888888999
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------HhHHHhh-------
Q 029675 87 GLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------AAEITDK------- 142 (189)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~~~~~~~------- 142 (189)
++++|+|+++. .++..+ ..+.. .+.|+++++||+|+.+... .+...++
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I-----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI-----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH-----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999762 222222 22232 3689999999999864211 0111111
Q ss_pred ----hCCccc----------cCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 143 ----LGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 143 ----~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
+....+ ....+.++++||++|+|++++.+.+....
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 111111 02456899999999999999998876543
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=111.63 Aligned_cols=164 Identities=14% Similarity=0.158 Sum_probs=110.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcc-cc--cCCcCceEEEEEEcCEEEEEEEcCCCCCc-----h--hc--hhhh
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI-----R--PL--WRHY 81 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~-----~--~~--~~~~ 81 (189)
..+.-.++++|-|++|||||++.+...... .+ .+|....+.++.+.-..+++.||||--+. . .+ ....
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 456688999999999999999988776654 22 34556666677777789999999994221 0 01 2233
Q ss_pred ccCCCEEEEEEECCCccc--HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcc
Q 029675 82 FQNTQGLIFVVDSNDRDR--VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
.+-..+|+|++|++..+. .......+..+-.. ..+.|+|+|+||+|+....+..+-.+.+-.......++.++++|
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 344667999999997664 44444444444222 26899999999999876654444333332222233446899999
Q ss_pred cCCCCChHHHHHHHHHHHhh
Q 029675 160 ATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~ 179 (189)
+.+.+||-++.....+.++.
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred ccchhceeeHHHHHHHHHHH
Confidence 99999998877776665544
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.2e-14 Score=100.56 Aligned_cols=164 Identities=18% Similarity=0.272 Sum_probs=105.8
Q ss_pred hhccCCceEEEEcCCCCChHHHHHhHhcCCccc---ccCCcCce-EEEEEEcCEEEEEEEcCCCCC-------chhchhh
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFN-VETVEYKNISFTVWDVGGQDK-------IRPLWRH 80 (189)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~---~~~t~~~~-~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~ 80 (189)
.....+++++++|..|+|||||||.|..+.... ...+.+.. +....++...+.+||+||-++ ++.....
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence 345688999999999999999999999655332 22222221 122334557899999999654 7777889
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------------CHhHHHhhhC---C
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLG---L 145 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~---~ 145 (189)
++...|.++.+.+..++.--... ..+.+++... -+.++++++|.+|..... ..++..+... .
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999876421121 2233333322 348999999999975431 1111111111 0
Q ss_pred ccccCcceEEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
..+. .-.+++..+...+-|++++...++..+-.
T Consensus 191 ~~~q-~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 191 RLFQ-EVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHh-hcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 0111 12245556778999999999999887653
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=103.88 Aligned_cols=135 Identities=24% Similarity=0.418 Sum_probs=102.5
Q ss_pred CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCccc----------HHHHHHHHHHHhcCCCC
Q 029675 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR----------VVEARDELHRMLNEDEL 116 (189)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~ 116 (189)
+|+|+....+..++..+.++|++||...+.-|..++.+++++|+|+++++.+. ..+....+..+......
T Consensus 181 ~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 181 PTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 57788888999999999999999999999999999999999999999986442 33445677788888777
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHhHHHhhhCCcc-----ccCcceEEEEcccCCCCChHHHHHHHH
Q 029675 117 RDAVLLVFANKQDLPNA-----------------MNAAEITDKLGLHS-----LRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 117 ~~~p~ivv~nK~D~~~~-----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
.+.++|+++||.|+..+ ...++....+...+ .....+.+..+.|.+-.+|+.+|+.+.
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 89999999999998642 11222222111111 111345566778999999999999999
Q ss_pred HHHhhcc
Q 029675 175 NNIASKV 181 (189)
Q Consensus 175 ~~~~~~~ 181 (189)
+.+....
T Consensus 341 d~Ii~~n 347 (354)
T KOG0082|consen 341 DTIIQNN 347 (354)
T ss_pred HHHHHHH
Confidence 9887653
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-13 Score=103.54 Aligned_cols=78 Identities=27% Similarity=0.421 Sum_probs=53.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc--c-----cCCcCceEEEE-------------------E-EcCEEEEEEEcCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT--T-----IPTIGFNVETV-------------------E-YKNISFTVWDVGG 70 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~--~-----~~t~~~~~~~~-------------------~-~~~~~~~i~D~~g 70 (189)
++|+++|.|++|||||+|+|.+..... + .|+.+...... + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876531 1 23333322100 0 1236789999999
Q ss_pred C----CCchhchhhh---ccCCCEEEEEEECC
Q 029675 71 Q----DKIRPLWRHY---FQNTQGLIFVVDSN 95 (189)
Q Consensus 71 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 95 (189)
. .....+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3333333333 78999999999996
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=101.80 Aligned_cols=148 Identities=17% Similarity=0.115 Sum_probs=101.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc------------------------------------ccccCCcCceEEEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------------------------------VTTIPTIGFNVETVEY 58 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~------------------------------------~~~~~t~~~~~~~~~~ 58 (189)
+..++++-+|...-||||||=||+.+.- .++.-|+++.|..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4568999999999999999999976320 0112255666666666
Q ss_pred cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 029675 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--A 136 (189)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~ 136 (189)
+..+|.+-||||++.|-+........||++|+++|+- ......-.....+..-. .-..+++..||+||.+..+ .
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence 8889999999999999999888889999999999983 33333322222222211 2355899999999987643 3
Q ss_pred hHHHhhhCCcccc---CcceEEEEcccCCCCChH
Q 029675 137 AEITDKLGLHSLR---QRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 137 ~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~ 167 (189)
+++...+. .++. -....+++.||..|.||-
T Consensus 160 ~~I~~dy~-~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYL-AFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHH-HHHHHcCCCcceEEechhccCCccc
Confidence 33433322 1111 123479999999999975
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.2e-14 Score=116.01 Aligned_cols=113 Identities=21% Similarity=0.116 Sum_probs=79.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC---------------Cccc----ccCCcCceE----EEEEEcCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG---------------EIVT----TIPTIGFNV----ETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~---------------~~~~----~~~t~~~~~----~~~~~~~~~~~i~D~~g~ 71 (189)
.+..+|+++|+.++|||||+++|+.. .+.. ...|+.... ..+++.++.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45589999999999999999999742 1111 112333322 224567789999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
.+|.......++.+|++++|+|+.+.-..+. ...+..... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 9998888889999999999999875322211 122322222 4567889999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.4e-14 Score=102.42 Aligned_cols=117 Identities=17% Similarity=0.130 Sum_probs=72.9
Q ss_pred EEEEEEEcCCCCCc---hhchhhhccC-----CCEEEEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 61 ISFTVWDVGGQDKI---RPLWRHYFQN-----TQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 61 ~~~~i~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
..+.+||+||+.+. +..+..+++. ++++++|+|........... .++........ .+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence 36899999997653 3333333332 89999999996543322222 22222111111 478999999999997
Q ss_pred CCCCHhHHHhhhCC--------c---------------ccc--CcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 132 NAMNAAEITDKLGL--------H---------------SLR--QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 132 ~~~~~~~~~~~~~~--------~---------------~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
+..+.++....+.. . .++ .....++++|+++++|++++.+++.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76554444333221 0 011 12246889999999999999999987763
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.1e-13 Score=105.66 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=71.3
Q ss_pred EEEEEEEcCCCCC-----chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 029675 61 ISFTVWDVGGQDK-----IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (189)
Q Consensus 61 ~~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 135 (189)
..+.++||||-.. ........+..+|++++|+|....-+... ..+...+.... .+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 4678999999643 12234457889999999999976433222 23334333321 1359999999999864322
Q ss_pred --HhHHHhhhCCc--cccCcceEEEEcccCCCCChHHHHHHHHHH
Q 029675 136 --AAEITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
.+.+....... ........++++||+.|.|++++++.+.+.
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 33333332111 000112358899999999999999998773
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-13 Score=103.68 Aligned_cols=161 Identities=17% Similarity=0.220 Sum_probs=111.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC--cccc-------------cCCcCceE----EEEEEcCEEEEEEEcCCCCCchh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE--IVTT-------------IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRP 76 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~--~~~~-------------~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~ 76 (189)
+-.+|+++.+...|||||++.|+.+. |.+. ....++.+ ..+.++++.++|+||||+.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34689999999999999999997654 2111 11223322 34778899999999999999999
Q ss_pred chhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---Cccc--cCc
Q 029675 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSL--RQR 151 (189)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~~~--~~~ 151 (189)
.....+...|++++++|+.+.. ....+..+...+. .+.+.|+|+||.|..+....+-+.+.+. ...+ .+.
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 9999999999999999997533 2333444555554 3666799999999876544333333222 1112 345
Q ss_pred ceEEEEcccCCCC----------ChHHHHHHHHHHHhhcc
Q 029675 152 HWYIQSTCATSGE----------GLYEGLDWLSNNIASKV 181 (189)
Q Consensus 152 ~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~~ 181 (189)
+++++..|+..|. ++..+|+.+++.+-...
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 6677788877643 57778887777665443
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-14 Score=101.75 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=103.0
Q ss_pred hhhccCCceEEEEcCCCCChHHHHHhHhcCCcccc--------cC---------CcCce----E----------------
Q 029675 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--------IP---------TIGFN----V---------------- 53 (189)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~--------~~---------t~~~~----~---------------- 53 (189)
+...+++.-|+|+|..|+|||||+.||...-.... .| .+++. |
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 45567789999999999999999999964211100 00 00000 0
Q ss_pred EE----------------EEEcCEEEEEEEcCCCCCc------hhchhh--hccCCCEEEEEEECCC---cccHHHHHHH
Q 029675 54 ET----------------VEYKNISFTVWDVGGQDKI------RPLWRH--YFQNTQGLIFVVDSND---RDRVVEARDE 106 (189)
Q Consensus 54 ~~----------------~~~~~~~~~i~D~~g~~~~------~~~~~~--~~~~~d~~i~v~d~~~---~~s~~~~~~~ 106 (189)
.. -........++|||||-.. ...... .-...-+++||+|... +..|..-.-+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 00 0113356889999997421 111111 1124667889999753 4445444444
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH-------hhhCC--ccc-----c---------CcceEEEEcccCCC
Q 029675 107 LHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT-------DKLGL--HSL-----R---------QRHWYIQSTCATSG 163 (189)
Q Consensus 107 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-------~~~~~--~~~-----~---------~~~~~~~~~Sa~~~ 163 (189)
--.++.. .+.|++++.||+|+.+..-..++. +.+.. ... . -+++..+.+|+.+|
T Consensus 173 AcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 173 ACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 4455555 789999999999998764333332 22221 000 0 14667889999999
Q ss_pred CChHHHHHHHHHHHhhcc
Q 029675 164 EGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~~~ 181 (189)
.|.+++|..+-+.+-+..
T Consensus 250 ~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 250 EGFDDFFTAVDESVDEYE 267 (366)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 999999999887776553
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-14 Score=88.95 Aligned_cols=137 Identities=21% Similarity=0.221 Sum_probs=91.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCC----chhchhhhccCCCEEEEEEEC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK----IRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~ 94 (189)
|++++|..|+|||||++++.|....- ..|..+ ++.+ =-.+||||..- +..-.......+|++++|-++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-kKTQAv-----e~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-KKTQAV-----EFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-ccccee-----eccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 78999999999999999998766331 122222 1111 12579999532 222234445689999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
+++++.-. ..+..+ ...|+|-+++|.|+....+.+.....+...... ++|++|+.++.|++++++.+.
T Consensus 75 nd~~s~f~--p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~----~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESRFP--PGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAGAE----PIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCccccCC--cccccc------cccceEEEEecccccchHhHHHHHHHHHHcCCc----ceEEEeccCcccHHHHHHHHH
Confidence 98764321 122222 346699999999999755544444444333332 588999999999999999876
Q ss_pred H
Q 029675 175 N 175 (189)
Q Consensus 175 ~ 175 (189)
.
T Consensus 143 ~ 143 (148)
T COG4917 143 S 143 (148)
T ss_pred h
Confidence 4
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=96.59 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=73.8
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcC--ceEEEEEEcCEEEEEEEcCCCCCchhchh---hhc----
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPLWR---HYF---- 82 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---~~~---- 82 (189)
..+.++|+++|.+|+||||++|++++.... +..++.+ .........+..+.++||||..+...... ..+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 356799999999999999999999988743 2222222 22233345788999999999765422211 111
Q ss_pred --cCCCEEEEEEECCC--cccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 83 --QNTQGLIFVVDSND--RDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 83 --~~~d~~i~v~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
...|+++||.+++. .... ..+...+...+...- -.+++++.|+.|...
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCC
Confidence 26999999966542 2212 222333444443221 256899999999653
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-13 Score=101.94 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=70.7
Q ss_pred cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--
Q 029675 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-- 136 (189)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-- 136 (189)
.+..+.++||+|...-... ....+|.+++|.++...+.++..... ++ ...-++|+||+|+......
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~------E~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IM------ELADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hh------hhhheEEeehhcccchhHHHH
Confidence 3578999999997633332 45679999999875545444443321 21 1223899999998754322
Q ss_pred --hHHHhhhCCcccc--CcceEEEEcccCCCCChHHHHHHHHHHHhhcc
Q 029675 137 --AEITDKLGLHSLR--QRHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 137 --~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
.++...+...... ....+++.+||+++.|++++++.+.+.+....
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~ 263 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALT 263 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 2333333321111 11236888999999999999999998765433
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=94.59 Aligned_cols=119 Identities=10% Similarity=0.086 Sum_probs=76.5
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCcccc----cCCcCceEEEEEEcCEEEEEEEcCCCCCchh---c-------h
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---L-------W 78 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------~ 78 (189)
.....++|+++|.+|+|||||+|++.+...... ..|...........+..+.+|||||-..... . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 345679999999999999999999999775321 2234444444556778999999999654421 1 1
Q ss_pred hhhcc--CCCEEEEEEECCCcc-cHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 79 RHYFQ--NTQGLIFVVDSNDRD-RVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 79 ~~~~~--~~d~~i~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
..++. ..|++++|..++... ... .+.+.+...+.... -.++++|.||+|...+
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCCC
Confidence 22332 578888887665321 222 23344444443221 2569999999997543
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=95.89 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=93.2
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc-----cCCcCceEEEEEEcCEEEEEEEcCCCCCchh-------ch----hhh
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP-------LW----RHY 81 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~----~~~ 81 (189)
++|+++|..|+||||++|.+++...... ..|...........+..+.++||||-.+... .. ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4899999999999999999999875422 2355666666778899999999999422111 11 123
Q ss_pred ccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----CccccCcceEEE
Q 029675 82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG----LHSLRQRHWYIQ 156 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 156 (189)
....|++++|+...... .-.....++..++....+ ..++|+.|..|.......++..+... ....+.++-.|.
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 45799999999987321 123333455556554332 45888899998766655433332110 111111221232
Q ss_pred EcccC------CCCChHHHHHHHHHHHhhcc
Q 029675 157 STCAT------SGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 157 ~~Sa~------~~~~i~~~~~~l~~~~~~~~ 181 (189)
..+.+ ....+.++++.+-+.+.+.-
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 23333 33457777777776666553
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-13 Score=98.23 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCCchhchhhhc--------cCCCEEEEEEECCCccc---HHHH-HHHHHHHhcCCCCCCCeEEEEEeCCC
Q 029675 62 SFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSNDRDR---VVEA-RDELHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s---~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
.+.++|||||.++...+.... ...-++++++|.....+ |-.. ...+.-..+ .+.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 799999999987766655444 45668889999864333 3222 112222222 4799999999999
Q ss_pred CCCCC---------C-----------HhHHHhhhCCccccCcce-EEEEcccCCCCChHHHHHHHHHHH
Q 029675 130 LPNAM---------N-----------AAEITDKLGLHSLRQRHW-YIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 130 ~~~~~---------~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
+.+.. + ...+...+.......... .++..|+.+++|+++++..+-+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 97621 0 122222222111122233 789999999999999998876653
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=95.01 Aligned_cols=142 Identities=12% Similarity=0.046 Sum_probs=84.4
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
.....|+++|.+|+|||||++.+.+..-. ......+. +......+..+.++||||.. ..+ ....+.+|++++|+|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEe
Confidence 45688999999999999999999865221 11111221 12233467789999999864 333 334578999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-HhHHHhhhCCccc--cCcceEEEEcccCCCCC
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEITDKLGLHSL--RQRHWYIQSTCATSGEG 165 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~ 165 (189)
........ ...+...+.. .+.| +++++||+|+.+... .+++...+..... ......++.+||+++..
T Consensus 113 a~~~~~~~--~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 113 ASFGFEME--TFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred cCcCCCHH--HHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 87543222 2223333332 3456 456999999864322 2333322211111 01234678899888643
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-12 Score=89.00 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=63.2
Q ss_pred EEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhH
Q 029675 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAE 138 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~ 138 (189)
....++++.|..-.....+. -+|.+|.|+|+.+.++... .....+ ...=++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~---~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR---KGGPGI------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh---hhHhHh------hhccEEEEEhhhccccccccHHH
Confidence 45667888884222222221 2688999999976544221 111111 1223899999999853 23333
Q ss_pred HHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
+.+..... ....+++++|+++|+|++++++++.+.+.-
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~ 197 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYALL 197 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 33322221 124578899999999999999999977653
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-12 Score=97.02 Aligned_cols=155 Identities=17% Similarity=0.076 Sum_probs=112.6
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc------cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
-|+-.|+-..|||||+..+.+.... ....|++..+...+.++..+.++|.||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4788999999999999999876533 1234777777778888889999999999999999888889999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
+.++. .+........++... .....++|+||+|..++...++...+...... -....++.+|+++|+||+++.+.
T Consensus 82 ~~deG--l~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEG--LMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccC--cchhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 99642 222222222222221 12335999999999987544444433322222 23345789999999999999999
Q ss_pred HHHHHh
Q 029675 173 LSNNIA 178 (189)
Q Consensus 173 l~~~~~ 178 (189)
+.+.+-
T Consensus 157 l~~L~~ 162 (447)
T COG3276 157 LIDLLE 162 (447)
T ss_pred HHHhhh
Confidence 998883
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-12 Score=107.92 Aligned_cols=112 Identities=20% Similarity=0.158 Sum_probs=78.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc------------cccc-------CCcCceEEEEEEc----------CEEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTI-------PTIGFNVETVEYK----------NISFTV 65 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~------------~~~~-------~t~~~~~~~~~~~----------~~~~~i 65 (189)
.+..+|+++|+.++|||||+++|+...- .+.. .|+......+.+. ++.+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 5567999999999999999999976321 0100 1111111222332 578999
Q ss_pred EEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
+||||+.+|.......++.+|++|+|+|+.+.-..+ ....|..... .+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999999888888999999999999987642222 2233444433 468999999999986
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-13 Score=87.82 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=77.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc-c-CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-I-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~-~-~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
+|++++|..|+|||+|+.++....+... . +|.+ +......+.+.++.+++||+..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 5899999999999999999977766532 2 3333 3333455677899999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
+.+++... |...+... ...+.|.++++||.|+.+.. .+...... .++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHHHH--------HHHHHhCCCcchhh
Confidence 88887655 44443332 22568899999999984321 12222221 35689999999985
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=109.10 Aligned_cols=113 Identities=19% Similarity=0.119 Sum_probs=80.3
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCc------------cccc-------CCcCceEEEEEE----------------
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTI-------PTIGFNVETVEY---------------- 58 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~------------~~~~-------~t~~~~~~~~~~---------------- 58 (189)
+.+-.+|+++|+.++|||||+++|+...- .+.. .|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 45678999999999999999999975331 0100 122211122222
Q ss_pred cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
.+..++++||||+.+|.......++.+|++|+|+|+.+.-..+. ...|..... .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 26788999999999999988888999999999999875432222 233444443 478999999999987
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-12 Score=100.97 Aligned_cols=157 Identities=21% Similarity=0.195 Sum_probs=104.5
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCC----------------------cc------c--cc--C--CcCceEEE
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGE----------------------IV------T--TI--P--TIGFNVET 55 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~----------------------~~------~--~~--~--t~~~~~~~ 55 (189)
.+..+...+.++++|+.++|||||+-+++..- |. + .+ . |-++....
T Consensus 170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~ 249 (603)
T KOG0458|consen 170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW 249 (603)
T ss_pred cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence 34556678999999999999999998886421 00 0 00 1 11122233
Q ss_pred EEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHH------HHHHHHHhcCCCCCCCeEEEEEeCCC
Q 029675 56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA------RDELHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
++-....+.+.|+||+..|-.........+|+.++|+|.+-. .|+.- ......+++.. .-..++|++||+|
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD 326 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL--GISQLIVAINKMD 326 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc--CcceEEEEeeccc
Confidence 444667899999999999999988888999999999998732 23221 11222233222 2456899999999
Q ss_pred CCCCC--CHhHHHhhhC-----CccccCcceEEEEcccCCCCChHHH
Q 029675 130 LPNAM--NAAEITDKLG-----LHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 130 ~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
..+.. ..+++...+. ...+....+.|++||..+|+|+-..
T Consensus 327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 98764 3444444332 3334456678999999999997543
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=92.39 Aligned_cols=160 Identities=21% Similarity=0.289 Sum_probs=102.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC----cccccCCcCceEEEEEE-cCEEEEEEEcCCCCCchh-----chhhhccCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----LWRHYFQNT 85 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~-----~~~~~~~~~ 85 (189)
...||+++|.+|+||||+=.-+..+. .....+|+++...++++ ++.-+.+||.+|++.+-. .....+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 35799999999999998743333222 22345677887777776 447899999999984432 455678899
Q ss_pred CEEEEEEECCCcc---cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCc---cccCcceEEEEcc
Q 029675 86 QGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---SLRQRHWYIQSTC 159 (189)
Q Consensus 86 d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~S 159 (189)
+++|+|||++..+ .+......+..+++.. +...+....+|.|+......+.+-+..... ......+.++.+|
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999997543 2233334444555433 667789999999998776544443322211 1123346677777
Q ss_pred cCCCCChHHHHHHHHHHHh
Q 029675 160 ATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~ 178 (189)
-.+ +.+-.++..+...+.
T Consensus 161 iwD-etl~KAWS~iv~~li 178 (295)
T KOG3886|consen 161 IWD-ETLYKAWSSIVYNLI 178 (295)
T ss_pred hhh-HHHHHHHHHHHHhhC
Confidence 665 334444444444433
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-12 Score=92.54 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=93.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcC------Ccc--cccC---------------------CcCceEEEEEE--------
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG------EIV--TTIP---------------------TIGFNVETVEY-------- 58 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~------~~~--~~~~---------------------t~~~~~~~~~~-------- 58 (189)
+.+.|.+.|+||+|||||++.|... +.. ...| ..+..+..+.-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 6799999999999999999988531 100 0001 11222222211
Q ss_pred ------------cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 029675 59 ------------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (189)
Q Consensus 59 ------------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 126 (189)
-++.+.++.|.|--..+.. ...-+|.+++|..+.-.+..+.++..+.++.. ++|+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~vVN 175 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEEEe
Confidence 2577888999874433332 34569999999999888888888887877754 89999
Q ss_pred CCCCCCCC-CHhHHHhhhCCccc--cCcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 127 KQDLPNAM-NAAEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 127 K~D~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
|.|..... ...++...+.+..- .....+++.|||.+++|++++++.+.+.-.
T Consensus 176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 99965432 23444444332211 123358999999999999999999887543
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-12 Score=92.85 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=108.5
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccC----CCE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQN----TQG 87 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~----~d~ 87 (189)
..-+|+|+|+.++||||||.+|.+.+........++.|..+.. +...+.+|-..|+.....+....+.. --.
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 3468999999999999999999988744433444444433332 23578999999988777766655543 247
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCC-----------------------------------------------------
Q 029675 88 LIFVVDSNDRDRVVEARDELHRMLNED----------------------------------------------------- 114 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----------------------------------------------------- 114 (189)
+|++.|.++|+.+-...+.|...+.+.
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 889999999976655544333321100
Q ss_pred --------CCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 115 --------ELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 115 --------~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
.+-.+|++||.||||.....+ ...++..+ ..+.-..+...+.+|+++..|++-+..+|++++
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~l-RkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHL-RKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHH-HHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 002467999999999854311 11112211 222334566788899999999999999999887
Q ss_pred hh
Q 029675 178 AS 179 (189)
Q Consensus 178 ~~ 179 (189)
+-
T Consensus 290 yG 291 (473)
T KOG3905|consen 290 YG 291 (473)
T ss_pred cC
Confidence 64
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.5e-12 Score=97.74 Aligned_cols=130 Identities=25% Similarity=0.422 Sum_probs=94.3
Q ss_pred CcCceEEEEEE-cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc----------cHHHHHHHHHHHhcCCCC
Q 029675 48 TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDEL 116 (189)
Q Consensus 48 t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~ 116 (189)
|+|+....+.. .+..+.++|++|+...++-|..++.+++++|||+++++.+ .+.+....|..+......
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 45777777888 8999999999999999999999999999999999986432 367777888899888777
Q ss_pred CCCeEEEEEeCCCCCCC--------------------CCHhHHHhhhC----CccccC---cceEEEEcccCCCCChHHH
Q 029675 117 RDAVLLVFANKQDLPNA--------------------MNAAEITDKLG----LHSLRQ---RHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 117 ~~~p~ivv~nK~D~~~~--------------------~~~~~~~~~~~----~~~~~~---~~~~~~~~Sa~~~~~i~~~ 169 (189)
.+.|+++++||.|+..+ ...+.+...+. ...... ..+.+..|+|.+-++++.+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 89999999999996421 11122221111 111111 4456667888888888888
Q ss_pred HHHHHHHH
Q 029675 170 LDWLSNNI 177 (189)
Q Consensus 170 ~~~l~~~~ 177 (189)
|+.+.+.|
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 88877653
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-12 Score=91.81 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=72.7
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCcccc
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLR 149 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 149 (189)
+++..+.+.+++++|.+++|+|+.++. ++..+..|+..... .++|+++|+||+|+.+..... +....+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 677888888999999999999999877 88888887765432 579999999999996542211 122222 2
Q ss_pred CcceEEEEcccCCCCChHHHHHHHHH
Q 029675 150 QRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
..++.++++||++|+|++++++.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 24567899999999999999988764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=92.48 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=82.3
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCccc-ccCC-----cCceEEEEEEcCE-EEEEEEcCCCCCchhchh-----h
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPT-----IGFNVETVEYKNI-SFTVWDVGGQDKIRPLWR-----H 80 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t-----~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~~~-----~ 80 (189)
..+.+++|+|+|.+|+|||||||.|.|-.-.+ .... +......+..... ++.+||.||......... .
T Consensus 31 ~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 31 IDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 45678999999999999999999997632211 0111 1122233444433 699999999543222222 2
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CC-------CCCHhHHHhh--------h
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL--PN-------AMNAAEITDK--------L 143 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~--~~-------~~~~~~~~~~--------~ 143 (189)
-+...|.+|++.+- .|....-++...+.. .++|+.+|-||.|. .+ ....+++.+. +
T Consensus 111 ~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 34578988887663 466666667666666 58999999999995 11 1112222221 1
Q ss_pred CCccccCcceEEEEcccCC--CCChHHHHHHHHHHHhhc
Q 029675 144 GLHSLRQRHWYIQSTCATS--GEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~~~~~~~ 180 (189)
..... ...++|-+|+.+ ..+...+.+.+.+.+-..
T Consensus 184 ~k~gv--~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 184 QKAGV--SEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HCTT---SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HHcCC--CcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 11112 223556677665 456778888777765443
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=102.81 Aligned_cols=112 Identities=21% Similarity=0.142 Sum_probs=77.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc------------cccc-------CCcCceEEEEEE----cCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTI-------PTIGFNVETVEY----KNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~------------~~~~-------~t~~~~~~~~~~----~~~~~~i~D~~g~ 71 (189)
.+..+|+++|+.++|||||+++|+...- .+.. -|+......+.+ .+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4557899999999999999999975221 0000 122222222222 4678999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
.+|.......++.+|++++|+|+...-.. .....|..... .+.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 99988888889999999999998754222 22233333333 245779999999975
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-11 Score=86.36 Aligned_cols=165 Identities=22% Similarity=0.295 Sum_probs=110.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc----cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhc---hhhhccCCCEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL---WRHYFQNTQGLIF 90 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~d~~i~ 90 (189)
-+|+++|...+||||+..-......+ -..+|....-.++...-+.|++||.|||..+-.. ....++.+.++|+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 56999999999999997544433222 1233333333334444578999999998754332 5567889999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC-C-------HhHHHhhhCCccccCcceEEEEccc
Q 029675 91 VVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM-N-------AAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
|+|+ .+.+.++...+...+.+. ..+++.+-|.+.|.|.-.+. . .+...+.+.-.....-++.|+-||-
T Consensus 108 vIDa--Qddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDA--QDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEec--hHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9998 444566655555554432 23678899999999964432 1 2222333333444456677888887
Q ss_pred CCCCChHHHHHHHHHHHhhccccCc
Q 029675 161 TSGEGLYEGLDWLSNNIASKVSSLT 185 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~~~~~ 185 (189)
.+ .+|-|+|..+++++..+++.+.
T Consensus 186 yD-HSIfEAFSkvVQkLipqLptLE 209 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIPQLPTLE 209 (347)
T ss_pred cc-hHHHHHHHHHHHHHhhhchhHH
Confidence 77 6799999999999998887654
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=98.44 Aligned_cols=158 Identities=22% Similarity=0.194 Sum_probs=102.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-----ccCCcCceEEEEE----------------EcCEEEEEEEcCCCCCc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVE----------------YKNISFTVWDVGGQDKI 74 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~~~~----------------~~~~~~~i~D~~g~~~~ 74 (189)
+.--++|+|+..+|||-|+..+.+..+-. -...++-.|.-.. +.---+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 45568999999999999999997644321 1112222221111 11124789999999999
Q ss_pred hhchhhhccCCCEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----C-C----------
Q 029675 75 RPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----M-N---------- 135 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~-~---------- 135 (189)
...+......||.+|+|+|+.. +.+++. +..+ +. .+.|+||.+||.|.--. . .
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lL-R~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLL-RM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHH----HHHH-Hh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 9999999999999999999964 333322 2222 22 58999999999995321 0 0
Q ss_pred --HhHHH-------hhhCCccc------c----CcceEEEEcccCCCCChHHHHHHHHHHHhhcc
Q 029675 136 --AAEIT-------DKLGLHSL------R----QRHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 136 --~~~~~-------~~~~~~~~------~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
..++. -+++...+ . ..-+.+++|||.+|+||.+++-+|+++.-.++
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 11111 11111111 1 12357889999999999999999988765544
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=87.53 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=65.1
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 139 (189)
++.+.++||+|.-... ......+|.++++......+.+... ...+ .++|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~---~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGI---KAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHH---HHHH------hhhccEEEEEcccccchhHHHHH
Confidence 5788999999854222 2356678888888654433222222 2222 35667999999998765332211
Q ss_pred Hhhh--CCccc----cCcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 140 TDKL--GLHSL----RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 140 ~~~~--~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
...+ ..... ......++.+||++++|++++++++.+...
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 1111 00000 011224789999999999999999988643
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=85.95 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=85.9
Q ss_pred hhccCCceEEEEcCCCCChHHHHHhHhcCCcc-------cccC----------CcCceEEEEE-----------------
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIP----------TIGFNVETVE----------------- 57 (189)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-------~~~~----------t~~~~~~~~~----------------- 57 (189)
..+.....|+++|..|+|||||+++++..... .... ..+.....+.
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHH
Confidence 44556788999999999999999998653100 0000 0111111110
Q ss_pred ---EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 58 ---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 58 ---~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
..+..+.+++|.|.-.... .+....+..+.|+|+.+.+.... . .... ...|.++++||+|+.+..
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~~------~~~a~iiv~NK~Dl~~~~ 164 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPGM------FKEADLIVINKADLAEAV 164 (207)
T ss_pred HhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHhH------HhhCCEEEEEHHHccccc
Confidence 0134677888888211111 11123566677888865432111 1 1111 246679999999997542
Q ss_pred --CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHH
Q 029675 135 --NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
...++....... ....+++++||++|+|++++++++.+.
T Consensus 165 ~~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 165 GFDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 233333332211 123568999999999999999999875
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=90.57 Aligned_cols=161 Identities=20% Similarity=0.147 Sum_probs=103.3
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC----cccc------cCCcCceEEEEEE---------cCEEEEEEEcCCCCCchh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE----IVTT------IPTIGFNVETVEY---------KNISFTVWDVGGQDKIRP 76 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~----~~~~------~~t~~~~~~~~~~---------~~~~~~i~D~~g~~~~~~ 76 (189)
..+++.++|+.++|||||..++..-. |... .-|.+.-+.++.. +...+.++|+||+...-+
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 35999999999999999999986422 2211 1133333333332 346789999999998888
Q ss_pred chhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhh--CCcccc
Q 029675 77 LWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKL--GLHSLR 149 (189)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~--~~~~~~ 149 (189)
......+-.|..++|+|+.... .-+.-.-.+-+++ -...++|+||.|+-.+.. .++..... .+....
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 7777778899999999996432 2111122233333 234688889998765422 22222211 111111
Q ss_pred C-cceEEEEcccCCC----CChHHHHHHHHHHHhhccc
Q 029675 150 Q-RHWYIQSTCATSG----EGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 150 ~-~~~~~~~~Sa~~~----~~i~~~~~~l~~~~~~~~~ 182 (189)
. .+.+++++|++.| +++.++.+.+..++.+...
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 1 3357889999999 8888888888888776543
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-10 Score=90.06 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=110.2
Q ss_pred hhhccCCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcC----ceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCC
Q 029675 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG----FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (189)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~----~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (189)
+...++.+++.++|+.++|||.+++.|.++.+.. +..+.. ++...+......+.+.|.+.. ......... ..|
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence 3456778999999999999999999999977663 222222 222333344456777777764 222222222 669
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCccccCcceEEEEccc
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
|++.++||++++.+|............. ...|+++|++|.|+... ..+.+++..+++. +.+..|+
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~ 566 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISS 566 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeecc
Confidence 9999999999999998888766666554 68999999999998643 3457777777765 2334666
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
+.... .++|..|+..+.-..
T Consensus 567 ~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 567 KTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCCCC-chHHHHHHHhhhCCC
Confidence 64233 888888887765443
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-11 Score=86.57 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=78.9
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhH
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAE 138 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~ 138 (189)
++.+.|+.|.|--..+. .....+|.+++|.-+.-.+..+..+..+.++.. ++|+||.|..... ...+
T Consensus 143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vINKaD~~~A~~a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVINKADRKGAEKAARE 210 (323)
T ss_pred CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEeccChhhHHHHHHH
Confidence 46688888887543333 234569999999998878888888888877754 8999999965432 2344
Q ss_pred HHhhhCCcc--cc--CcceEEEEcccCCCCChHHHHHHHHHHHhhccc
Q 029675 139 ITDKLGLHS--LR--QRHWYIQSTCATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 139 ~~~~~~~~~--~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
+...+.... .. ....+++.|||..|+|++++++.+.+...-...
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 444444332 22 234478899999999999999999887654433
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-10 Score=87.74 Aligned_cols=113 Identities=24% Similarity=0.246 Sum_probs=75.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC----Ccc-------------c-----ccCCcCceE---EEEEE-----cCEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG----EIV-------------T-----TIPTIGFNV---ETVEY-----KNISFT 64 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~----~~~-------------~-----~~~t~~~~~---~~~~~-----~~~~~~ 64 (189)
.-++-|.|+|+.++|||||+++|.+. ... + +..|++..+ .-+.. -..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45689999999999999999999887 222 1 112444433 22222 236899
Q ss_pred EEEcCCCC--------Cchh---------------------chhhhcc-CCCEEEEEE-ECC----CcccHHHHHHHHHH
Q 029675 65 VWDVGGQD--------KIRP---------------------LWRHYFQ-NTQGLIFVV-DSN----DRDRVVEARDELHR 109 (189)
Q Consensus 65 i~D~~g~~--------~~~~---------------------~~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~ 109 (189)
++||+|.. +-.. -....++ ++++.|+|. |.+ .++.+......+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999832 1111 0233445 899999999 764 23455666555555
Q ss_pred HhcCCCCCCCeEEEEEeCCCC
Q 029675 110 MLNEDELRDAVLLVFANKQDL 130 (189)
Q Consensus 110 ~~~~~~~~~~p~ivv~nK~D~ 130 (189)
.++. .++|+++++||.|-
T Consensus 175 eLk~---~~kPfiivlN~~dp 192 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHP 192 (492)
T ss_pred HHHh---cCCCEEEEEECcCC
Confidence 5555 68999999999994
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.3e-11 Score=81.13 Aligned_cols=64 Identities=23% Similarity=0.332 Sum_probs=43.3
Q ss_pred EEEEEEEcCCCC----CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 029675 61 ISFTVWDVGGQD----KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (189)
Q Consensus 61 ~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (189)
..+.++||||-. .....+..+++.+|++|+|.+.....+-.... .+.+.... ....+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcC---CCCeEEEEEcCC
Confidence 358899999953 34466788889999999999998754433333 34444443 234489999983
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=95.60 Aligned_cols=115 Identities=19% Similarity=0.145 Sum_probs=85.2
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC--------------cccc---cC----CcCceEEEEEEcC-EEEEEEEcCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTT---IP----TIGFNVETVEYKN-ISFTVWDVGGQ 71 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~--------------~~~~---~~----t~~~~~~~~~~~~-~~~~i~D~~g~ 71 (189)
..+-.+|.++|+.++|||||..+++-.. +.+. .. |+.....++.+.+ +.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4567899999999999999999996421 1111 11 2233334566774 99999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
-+|.......++-+|+++.|+|+...-..+ ....|.+... .+.|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhh----cCCCeEEEEECcccccc
Confidence 999999999999999999999997543222 2234555544 58999999999997654
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-11 Score=90.92 Aligned_cols=127 Identities=21% Similarity=0.298 Sum_probs=92.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc--CCc------c----c-----------cc--CCcCceEEEEEEcCEEEEEEEcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL--GEI------V----T-----------TI--PTIGFNVETVEYKNISFTVWDVG 69 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~--~~~------~----~-----------~~--~t~~~~~~~~~~~~~~~~i~D~~ 69 (189)
.++...++|-+|.+|||||..+|+- +.+ . . .. -++...+.++++.+..+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 4567789999999999999999853 111 0 0 00 12233456788899999999999
Q ss_pred CCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCc
Q 029675 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (189)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~ 146 (189)
|+++|..-....+..+|.+++|+|+... ++..-..+.++.+. .++|++=++||.|...... .+++.+.+++.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQ 164 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCcc
Confidence 9999988888888889999999999753 34433445555554 6899999999999765433 45566666644
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.3e-11 Score=87.46 Aligned_cols=161 Identities=17% Similarity=0.104 Sum_probs=105.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc---cc-cC--CcCceE----------------EE----EEE------cCEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TT-IP--TIGFNV----------------ET----VEY------KNIS 62 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~---~~-~~--t~~~~~----------------~~----~~~------~~~~ 62 (189)
+..++|.++|+...|||||...|.+--.. +. .. |+..-| +. -.. --..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 56799999999999999999998762211 00 00 000000 00 000 1146
Q ss_pred EEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHH--HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----H
Q 029675 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD--ELHRMLNEDELRDAVLLVFANKQDLPNAMN----A 136 (189)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~ 136 (189)
+.+.|.||++-......+...--|++++|+..+.+..-....+ .-.+++. -..++++-||.|+.+... +
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig-----ik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG-----IKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc-----cceEEEEecccceecHHHHHHHH
Confidence 8899999999887777766677899999999987543222222 2223333 345899999999987633 2
Q ss_pred hHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHHhhccc
Q 029675 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
+++.+...-. -..+.+++.+||..+.||+.+++.+.+.+-....
T Consensus 163 ~qIk~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 163 EQIKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 2232222211 1245678899999999999999999998866543
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=86.10 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=69.0
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccccc-----------CCcCceEEEEEE--c--CEEEEEEEcCCCCCc-------
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-----------PTIGFNVETVEY--K--NISFTVWDVGGQDKI------- 74 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~~~-----------~t~~~~~~~~~~--~--~~~~~i~D~~g~~~~------- 74 (189)
.++|+|+|.+|+|||||||.|.+....... ++..+....... . .+++.++||||.-..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999886643211 122233222222 2 368899999993211
Q ss_pred -----------hhc---------hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 75 -----------RPL---------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 75 -----------~~~---------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
... ....=...|+++|.++++.. ++....-.....+. ...++|-|+.|.|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 000 01111258999999998743 23444433444444 357789999999987654
Q ss_pred CHhHHHhh
Q 029675 135 NAAEITDK 142 (189)
Q Consensus 135 ~~~~~~~~ 142 (189)
+...+...
T Consensus 159 el~~~k~~ 166 (281)
T PF00735_consen 159 ELQAFKQR 166 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=83.73 Aligned_cols=144 Identities=19% Similarity=0.149 Sum_probs=90.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc-------CCc---c--ccc-------CCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL-------GEI---V--TTI-------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~-------~~~---~--~~~-------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
...++|..+|+.+.|||||...+.. ... . ..- -|+.....++.-.+..+...|+||+.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 4579999999999999999876642 111 1 111 13334344455567788999999999998
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH-----HhhhCCccccC
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI-----TDKLGLHSLRQ 150 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-----~~~~~~~~~~~ 150 (189)
+.........|+.|+|+++++....+.. ..++......-+.+++++||+|+.+..+..++ .+.+..-.+..
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTr----EHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTR----EHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcch----hhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 8877777889999999999874332222 11111111123468999999999975433222 22222323333
Q ss_pred cceEEEEcccCC
Q 029675 151 RHWYIQSTCATS 162 (189)
Q Consensus 151 ~~~~~~~~Sa~~ 162 (189)
...+++.-|+..
T Consensus 166 d~~Pii~gSal~ 177 (394)
T COG0050 166 DDTPIIRGSALK 177 (394)
T ss_pred CCcceeechhhh
Confidence 445666677654
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.3e-10 Score=87.98 Aligned_cols=164 Identities=14% Similarity=0.176 Sum_probs=107.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEc------CEEEEEEEcCCCCCchhchhhhccC----C
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK------NISFTVWDVGGQDKIRPLWRHYFQN----T 85 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~------~~~~~i~D~~g~~~~~~~~~~~~~~----~ 85 (189)
..-.|+|+|..++|||||+.+|.+.+ ...++.+..|...+.. ...+++|-..|...+..+....+.. -
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 45789999999999999999997654 3445666666555441 2478999999987777776655542 3
Q ss_pred CEEEEEEECCCcccHHHHHHHHHH-----------------------------Hhc---CC-----------------C-
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHR-----------------------------MLN---ED-----------------E- 115 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~-----------------------------~~~---~~-----------------~- 115 (189)
-++++|.|.+.|+.+-.....|.. +.. .. .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 578899999999865432221111 100 00 0
Q ss_pred ------------CCCCeEEEEEeCCCCCCCCC--------HhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHH
Q 029675 116 ------------LRDAVLLVFANKQDLPNAMN--------AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 116 ------------~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
.-++|++||.+|+|.....+ .-.+..+.-..+.-..+...+.||++...+++.+...|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 01378999999999753211 1112222222233345667788999999999999999888
Q ss_pred HHhhcc
Q 029675 176 NIASKV 181 (189)
Q Consensus 176 ~~~~~~ 181 (189)
.++..-
T Consensus 262 ~l~~~~ 267 (472)
T PF05783_consen 262 RLYGFP 267 (472)
T ss_pred HhccCC
Confidence 877653
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.8e-10 Score=88.89 Aligned_cols=115 Identities=11% Similarity=0.110 Sum_probs=73.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-c---cCCcCceEEEEEEcCEEEEEEEcCCCCCch-------hc---hhhh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-T---IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PL---WRHY 81 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~~~~ 81 (189)
..++|+++|.+|+||||++|++++..... . ..|+..........+..+.++||||-.... .. ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 34689999999999999999999976432 1 234433333334567889999999965431 11 1223
Q ss_pred cc--CCCEEEEEEECCCcccH-H--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 82 FQ--NTQGLIFVVDSNDRDRV-V--EARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 82 ~~--~~d~~i~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+. .+|++|+|..+...... + .+...+..++....+ ..+||+.|+.|...
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEEEEEeCCccCC
Confidence 23 48999999987532221 1 233444444443322 45899999999764
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-10 Score=90.35 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=82.0
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccccC----------------CcCceEE---------EEEEcCEEEEEEEc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----------------TIGFNVE---------TVEYKNISFTVWDV 68 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~----------------t~~~~~~---------~~~~~~~~~~i~D~ 68 (189)
+....++.++|+-++|||+|+..|..+..+...+ ..++.+. ..+.+.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 4566899999999999999999998765432111 1111111 12235678999999
Q ss_pred CCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 029675 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (189)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 130 (189)
||+-.|.......++.+|++++|+|+.+.-.+.. ...+...++ .+.|+++|+||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh----ccCcEEEEEehhHH
Confidence 9999999999999999999999999976544432 233444444 57999999999995
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-10 Score=85.65 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=82.3
Q ss_pred hhhccCCceEEEEcCCCCChHHHHHhHhcCCcc-------c-ccCC---------cCceEEEE-----------------
Q 029675 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-------T-TIPT---------IGFNVETV----------------- 56 (189)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-------~-~~~t---------~~~~~~~~----------------- 56 (189)
.+.....+-+.++|.+|+|||||++++++.-.. . ...| .+.....+
T Consensus 98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al 177 (290)
T PRK10463 98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAA 177 (290)
T ss_pred HHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHH
Confidence 345567899999999999999999887653110 0 0001 11111111
Q ss_pred ---EEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 57 ---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 57 ---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
...+..+.++++.|.--..... .. ..+.-+.++++...+. ... .+-.+ ...+-++++||+|+.+.
T Consensus 178 ~~L~~~~~d~liIEnvGnLvcPa~f-dl--ge~~~v~vlsV~eg~d--kpl-Kyp~~------f~~ADIVVLNKiDLl~~ 245 (290)
T PRK10463 178 PRLPLDDNGILFIENVGNLVCPASF-DL--GEKHKVAVLSVTEGED--KPL-KYPHM------FAAASLMLLNKVDLLPY 245 (290)
T ss_pred HHHhhcCCcEEEEECCCCccCCCcc-ch--hhceeEEEEECccccc--cch-hccch------hhcCcEEEEEhHHcCcc
Confidence 1123345566666641110000 01 1223346666653321 000 01111 23556999999999753
Q ss_pred C--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 134 M--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 134 ~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
. +.+.+....... .....++++|+++|+|++++.+++.++.
T Consensus 246 ~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 246 LNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred cHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 2 233333333221 1235689999999999999999998753
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-08 Score=72.79 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=42.9
Q ss_pred EEEEEEEcCCCCCc-------------hhchhhhccC-CCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 029675 61 ISFTVWDVGGQDKI-------------RPLWRHYFQN-TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (189)
Q Consensus 61 ~~~~i~D~~g~~~~-------------~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 126 (189)
..+.++||||-... +.+...|+++ .+++++|+|....-.-.... .+.+.+.. ...++++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l-~ia~~ld~---~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL-KLAKEVDP---QGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH-HHHHHHHH---cCCcEEEEEE
Confidence 47899999996421 2245667774 45888999875321111111 22233222 5789999999
Q ss_pred CCCCCCC
Q 029675 127 KQDLPNA 133 (189)
Q Consensus 127 K~D~~~~ 133 (189)
|.|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9998654
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=83.86 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=56.8
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cc--cCCcCceEEEEEEc-----------------CEEEEEEEcCCCCC-
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK-----------------NISFTVWDVGGQDK- 73 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~-----------------~~~~~i~D~~g~~~- 73 (189)
.+.++|+++|.||+|||||+|.|.+.... .. ..|.+.+...+... ...+.++|+||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 66789999999999999999999876543 22 22445555444443 33589999999432
Q ss_pred ------chhchhhhccCCCEEEEEEECC
Q 029675 74 ------IRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 74 ------~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112334567899999999974
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.4e-09 Score=79.27 Aligned_cols=121 Identities=19% Similarity=0.207 Sum_probs=81.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCccc----ccCCcCceEEEEEEc-------------------------------
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYK------------------------------- 59 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~------------------------------- 59 (189)
...--|+++|....||||||+-|+.+.++. ..||++.....+.++
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 345679999999999999999999988763 456666554433221
Q ss_pred ----------CEEEEEEEcCCCC-----------CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC
Q 029675 60 ----------NISFTVWDVGGQD-----------KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118 (189)
Q Consensus 60 ----------~~~~~i~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (189)
-.+++++||||-- .|.....=+...+|.+|++||+...+--.+....+..+.. ..
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Cc
Confidence 0247899999932 3334455566789999999998754422333333333333 34
Q ss_pred CeEEEEEeCCCCCCCCCHhHH
Q 029675 119 AVLLVFANKQDLPNAMNAAEI 139 (189)
Q Consensus 119 ~p~ivv~nK~D~~~~~~~~~~ 139 (189)
-.+-||+||.|..+.++.-.+
T Consensus 212 dkiRVVLNKADqVdtqqLmRV 232 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQQLMRV 232 (532)
T ss_pred ceeEEEeccccccCHHHHHHH
Confidence 558899999999887443333
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.8e-10 Score=87.18 Aligned_cols=159 Identities=19% Similarity=0.272 Sum_probs=111.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCce---EEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.++|+.++|..++|||+|+++++.+.+.....+.+-. ...+......+.+.|.+|... ..+....|++|+||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEE
Confidence 5689999999999999999999999988554443322 233455678888889888433 33557799999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcc-ccCcceEEEEcccCCCCChHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-LRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
.+.+..+|+........+........+|+++++++.-. .......+....+... .+...+.++++++..|.++...|.
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~i-S~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~ 182 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHI-SAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ 182 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchh-hcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence 99999999888776666654444456888888886432 2111111111111111 112335688999999999999999
Q ss_pred HHHHHHhhc
Q 029675 172 WLSNNIASK 180 (189)
Q Consensus 172 ~l~~~~~~~ 180 (189)
.+..++...
T Consensus 183 ~~~~k~i~~ 191 (749)
T KOG0705|consen 183 EVAQKIVQL 191 (749)
T ss_pred HHHHHHHHH
Confidence 998887665
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=80.34 Aligned_cols=76 Identities=24% Similarity=0.242 Sum_probs=52.3
Q ss_pred EEEEcCCCCChHHHHHhHhcCCcc-c--ccCCcCceEEEEEEcC-----------------EEEEEEEcCCCCCc----h
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKI----R 75 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~----~ 75 (189)
|+++|.|++|||||+|++.+.... . ...|++.....+.+.+ ..+.++|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999987753 2 2334455554444433 25999999994321 1
Q ss_pred h---chhhhccCCCEEEEEEECC
Q 029675 76 P---LWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 76 ~---~~~~~~~~~d~~i~v~d~~ 95 (189)
. .....++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 2334457899999999874
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.8e-08 Score=70.77 Aligned_cols=85 Identities=15% Similarity=0.254 Sum_probs=59.3
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cc-cCCcCceEEEEEEcCEEEEEEEcCCCC-------CchhchhhhccC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQD-------KIRPLWRHYFQN 84 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~ 84 (189)
+-.-+++++|-|.+|||||+..+....-. .+ ..|....-..+.+.+.++++.|.||-- ...+...+..+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 34568999999999999999988653321 22 122222223467788999999999832 223334556788
Q ss_pred CCEEEEEEECCCccc
Q 029675 85 TQGLIFVVDSNDRDR 99 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s 99 (189)
+|.+++|.|+...+.
T Consensus 140 aDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 140 ADLILMVLDATKSED 154 (364)
T ss_pred ccEEEEEecCCcchh
Confidence 999999999986543
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=70.96 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=81.9
Q ss_pred cCC-ceEEEEcCCCCChHHHHHhHhcC---Cccc-----ccCC----------cCceEEEE-------------------
Q 029675 15 KKE-MRILMVGLDAAGKTTILYKLKLG---EIVT-----TIPT----------IGFNVETV------------------- 56 (189)
Q Consensus 15 ~~~-~~i~viG~~~~GKssli~~l~~~---~~~~-----~~~t----------~~~~~~~~------------------- 56 (189)
++. ++|.|.|++|||||+|+.+++.. ++.- ..-| .+.....+
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~ 89 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEE 89 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHH
Confidence 444 89999999999999999887532 1100 0000 11111111
Q ss_pred ---EEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 57 ---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 57 ---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
......+.++...|.- --. -++.-..+.-|+|+|++..+.... .. ..... ..=++|+||.|+.+.
T Consensus 90 l~~~~~~~Dll~iEs~GNL-~~~--~sp~L~d~~~v~VidvteGe~~P~--K~------gP~i~-~aDllVInK~DLa~~ 157 (202)
T COG0378 90 LVLDFPDLDLLFIESVGNL-VCP--FSPDLGDHLRVVVIDVTEGEDIPR--KG------GPGIF-KADLLVINKTDLAPY 157 (202)
T ss_pred HhhcCCcCCEEEEecCcce-ecc--cCcchhhceEEEEEECCCCCCCcc--cC------CCcee-EeeEEEEehHHhHHH
Confidence 0112456666777711 111 111122448899999976432100 00 00001 134899999999875
Q ss_pred CCH--hHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 134 MNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 134 ~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
... +......... ..+.+++.+|+++|+|++++++++..+.
T Consensus 158 v~~dlevm~~da~~~---np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 158 VGADLEVMARDAKEV---NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred hCccHHHHHHHHHHh---CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 433 3322221111 1345788999999999999999987764
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-09 Score=73.91 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=38.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccc--cCCcCceEEEEEEcCEEEEEEEcCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGG 70 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g 70 (189)
..++++++|.||+|||||+|++.+...... .|.+......+... ..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcC
Confidence 358999999999999999999998775433 33222222333332 3689999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.8e-09 Score=80.30 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=54.4
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cc--cCCcCceEEEEEEcC-----------------EEEEEEEcCCCCCc---
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKI--- 74 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~--- 74 (189)
++|+++|.||+|||||+|++.+.... .. ..|++.....+...+ ..+.+.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999987732 22 234455444444332 35899999994321
Q ss_pred ----hhchhhhccCCCEEEEEEECC
Q 029675 75 ----RPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 75 ----~~~~~~~~~~~d~~i~v~d~~ 95 (189)
.......++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112334467899999999984
|
|
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.1e-09 Score=75.13 Aligned_cols=133 Identities=26% Similarity=0.402 Sum_probs=89.5
Q ss_pred CcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc----------cHHHHHHHHHHHhcCCCCC
Q 029675 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDELR 117 (189)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~ 117 (189)
|.|+....+.++.++|+.+|.+||.+.+.-|..++.+..++|+|...+... .+.+....+..+....-+.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 446666677788899999999999999999999999999999998865322 2344444555555554446
Q ss_pred CCeEEEEEeCCCCCCC------------------------------CCHhHHHh------h-hCCcccc---CcceEEEE
Q 029675 118 DAVLLVFANKQDLPNA------------------------------MNAAEITD------K-LGLHSLR---QRHWYIQS 157 (189)
Q Consensus 118 ~~p~ivv~nK~D~~~~------------------------------~~~~~~~~------~-~~~~~~~---~~~~~~~~ 157 (189)
.+.+|+.+||.|+..+ ..+.-+.. . +.++.+. ...|.+-.
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 7889999999997532 00000000 0 0011111 12344445
Q ss_pred cccCCCCChHHHHHHHHHHHhhc
Q 029675 158 TCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
|.|.+-++|..+|+...+.+.+.
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr~ 371 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQRM 371 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHHH
Confidence 77888899999999988777654
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-09 Score=71.94 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=38.6
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCce--EEEEEEcCEEEEEEEcCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGG 70 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~g 70 (189)
.+.++|+++|.||+|||||+|++.+.......++.+.. ...+.. +..+.++||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-MKRIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-CCCEEEEECcC
Confidence 35688999999999999999999987765433333322 222222 23588999998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-09 Score=71.94 Aligned_cols=95 Identities=17% Similarity=0.097 Sum_probs=62.2
Q ss_pred chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcce
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
++.+...+.+++|++++|+|+.++..... ..+...... .+.|+++++||+|+.+......+.... ...+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIK-----ESEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHH-----HhCCC
Confidence 35567778888999999999976542221 122222222 368999999999986432222211111 11223
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHh
Q 029675 154 YIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
.++.+||+++.|++++++.+.+.+.
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHh
Confidence 5788999999999999999987653
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.6e-09 Score=70.66 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=38.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccc--cCCcCceEEEEEEcCEEEEEEEcCCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (189)
+++++|.+|+|||||+|++.+...... .+..+.....+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999998876532 233333334444433 6899999995
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-09 Score=78.22 Aligned_cols=149 Identities=21% Similarity=0.238 Sum_probs=94.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc---cccCCcCceEEEEEEc-CEEEEEEEcCCCC---------Cchhchhhhc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQD---------KIRPLWRHYF 82 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~g~~---------~~~~~~~~~~ 82 (189)
..--|.++|-.|+|||||++.|...... ....|.+..-...... +..+.+.||-|-- .|+......
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeV- 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEV- 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHH-
Confidence 4456899999999999999999854422 2244555444434443 3467788999932 334433333
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe----EEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEc
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
..+|+++-|.|++.|.. +.........++....+..| ++=|-||.|.... +...+.. . -+.+
T Consensus 256 aeadlllHvvDiShP~a-e~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~----~~e~E~n-------~--~v~i 321 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNA-EEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED----EVEEEKN-------L--DVGI 321 (410)
T ss_pred hhcceEEEEeecCCccH-HHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc----cCccccC-------C--cccc
Confidence 46999999999998864 44444444555544434444 4555666665432 1111111 1 3469
Q ss_pred ccCCCCChHHHHHHHHHHHhh
Q 029675 159 CATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
||++|+|.+++++.+-..+..
T Consensus 322 saltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ccccCccHHHHHHHHHHHhhh
Confidence 999999999999988776654
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.8e-09 Score=78.78 Aligned_cols=90 Identities=19% Similarity=0.179 Sum_probs=62.6
Q ss_pred hhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEE
Q 029675 78 WRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
....+.++|.+++|+|+.++. ....+..++... .. .++|+++|+||+|+.+......+...+. ..++.++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeEE
Confidence 344578999999999998765 343445555444 22 5789999999999975433333333222 2334678
Q ss_pred EcccCCCCChHHHHHHHHHH
Q 029675 157 STCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~ 176 (189)
.+||+++.|++++++.+...
T Consensus 154 ~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 154 FISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEcCCCCCHHHHhhhhccc
Confidence 99999999999999988654
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-08 Score=75.09 Aligned_cols=123 Identities=20% Similarity=0.323 Sum_probs=76.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCccc-----------ccCCcCceEEEEEE--c--CEEEEEEEcCCCCCc-----
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEY--K--NISFTVWDVGGQDKI----- 74 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~~~--~--~~~~~i~D~~g~~~~----- 74 (189)
.-.|+|+++|+.|.|||||+|+|++..... ..+++.+....... + ...+.++||||--++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 456999999999999999999998864331 12344444433332 2 368899999992111
Q ss_pred --h-------hchhhhc--------------cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 75 --R-------PLWRHYF--------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 75 --~-------~~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
+ .....|+ ...|+++|.+.++. .++..+.-....-+.. .+-+|-|+.|.|.-
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeeeeccccC
Confidence 0 0111111 24899999999874 3445554444444442 34478888899987
Q ss_pred CCCCHhHHHhh
Q 029675 132 NAMNAAEITDK 142 (189)
Q Consensus 132 ~~~~~~~~~~~ 142 (189)
...+...+.+.
T Consensus 176 T~~El~~~K~~ 186 (373)
T COG5019 176 TDDELAEFKER 186 (373)
T ss_pred CHHHHHHHHHH
Confidence 66554444443
|
|
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-09 Score=76.35 Aligned_cols=134 Identities=25% Similarity=0.363 Sum_probs=90.2
Q ss_pred CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCC
Q 029675 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (189)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (189)
||+|+....++...+.|.+.|.+|+...+..|..++.+.-.+++++.++.. ...++....+..++.-.-.
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 566776667777888999999999999999999999998888887665432 2344445556566554444
Q ss_pred CCCeEEEEEeCCCCCCCC------------------CHhH----HHhhhCCccc--cCcceEEEEcccCCCCChHHHHHH
Q 029675 117 RDAVLLVFANKQDLPNAM------------------NAAE----ITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 117 ~~~p~ivv~nK~D~~~~~------------------~~~~----~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
.+.++|+.+||.|+..+. +.+. +...+..... ....+.. .+.|.+-+||.-+|..
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SH-fTcATDT~NIRfVFaa 343 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSH-FTCATDTENIRFVFAA 343 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeee-eeecccchhHHHHHHH
Confidence 689999999999986531 1111 1111111111 1112222 3678888999999999
Q ss_pred HHHHHhhcc
Q 029675 173 LSNNIASKV 181 (189)
Q Consensus 173 l~~~~~~~~ 181 (189)
+.+.+++..
T Consensus 344 VkDtiLq~~ 352 (359)
T KOG0085|consen 344 VKDTILQLN 352 (359)
T ss_pred HHHHHHHhh
Confidence 999887753
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.1e-09 Score=79.65 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=103.3
Q ss_pred hhccCCceEEEEcCCCCChHHHHHhHhcCC----------------------------cc------cccCCcCceEEEEE
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGE----------------------------IV------TTIPTIGFNVETVE 57 (189)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssli~~l~~~~----------------------------~~------~~~~t~~~~~~~~~ 57 (189)
.++...++++|+|+..+||||+-.+++... .. ....|.+.-...+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 345788999999999999999987774311 00 01123344444455
Q ss_pred EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc---ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
-....+.++|+||+..|-.........+|+.++|+++... -.|+.--+............-...|+++||+|.....
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 6678899999999999988888888899999999998432 2333332222222222222346689999999976432
Q ss_pred ----CHhHHH----hhhCCccc-cCcceEEEEcccCCCCChHHHHH
Q 029675 135 ----NAAEIT----DKLGLHSL-RQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 135 ----~~~~~~----~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
.+.+.. ..+....+ ......|+++|..+|.++++..+
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 122222 22221111 22567899999999999987664
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=72.38 Aligned_cols=97 Identities=19% Similarity=0.101 Sum_probs=62.6
Q ss_pred chhchhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhh---CCccc
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKL---GLHSL 148 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~---~~~~~ 148 (189)
++.++..+++.+|++++|+|+.++. ++.. .+ ... ..+.|+++|+||+|+.+... ...+.... .....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~---~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIP---RL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccch---hH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 5778888999999999999998653 2211 11 111 14689999999999864432 22222111 00000
Q ss_pred cCcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
......++.+||+++.|++++++.+.+.+.
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 000124788999999999999999988763
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.3e-08 Score=73.20 Aligned_cols=122 Identities=19% Similarity=0.294 Sum_probs=75.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccc--------cC--CcCceEEEEEE--c--CEEEEEEEcCCCCC-------c
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--------IP--TIGFNVETVEY--K--NISFTVWDVGGQDK-------I 74 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~--------~~--t~~~~~~~~~~--~--~~~~~i~D~~g~~~-------~ 74 (189)
-.|.++++|+.|.|||||||+|....+... .+ |..+....... + ..++++.||||--+ +
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 359999999999999999999987654422 11 33333333333 2 36788999999211 1
Q ss_pred hh------------------chhhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 75 RP------------------LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 75 ~~------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
+. ..+.-+. ..|+++|.+.+.. .++..+.-.+..-+. ....+|-|+.|.|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 10 0111122 5899999999874 234555444444444 356678888899987665
Q ss_pred CHhHHHhh
Q 029675 135 NAAEITDK 142 (189)
Q Consensus 135 ~~~~~~~~ 142 (189)
+...+...
T Consensus 175 El~~~K~~ 182 (366)
T KOG2655|consen 175 ELNQFKKR 182 (366)
T ss_pred HHHHHHHH
Confidence 54444443
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-08 Score=75.52 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=101.2
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCccc-----------------ccCCcCceEEEEEE------------------
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPTIGFNVETVEY------------------ 58 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~-----------------~~~t~~~~~~~~~~------------------ 58 (189)
....+.+.+.|+.++|||||.-.|..+...+ ..-+.++.+..+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3566899999999999999998887654321 00122222222111
Q ss_pred -----cCEEEEEEEcCCCCCchhc--hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 59 -----KNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 59 -----~~~~~~i~D~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
.+.-+.+.||.|++.|-+. ....-++.|-.++++.+++.- +.+-....-+..- ...|++++.||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~--~~~tkEHLgi~~a---~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV--TKMTKEHLGIALA---MELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc--chhhhHhhhhhhh---hcCCEEEEEEecccC
Confidence 2345789999999988665 344556899999999997643 3332323222222 579999999999998
Q ss_pred CCCCHhHHHhhh----C----Cc--------------cc-cCc-ceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 132 NAMNAAEITDKL----G----LH--------------SL-RQR-HWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 132 ~~~~~~~~~~~~----~----~~--------------~~-~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
++...+.+.+.. . +. -. ... -++++.+|+.+|+|.+-+.+.+...-.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~ 339 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPK 339 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCc
Confidence 765433322211 1 00 00 012 468999999999999877766554433
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-08 Score=67.70 Aligned_cols=55 Identities=25% Similarity=0.344 Sum_probs=40.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEE-EEEEcCEEEEEEEcCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG 70 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~g 70 (189)
...+++++|.+++|||||+|++.++......++.+.... .+-..+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 568999999999999999999998765554555554332 1111234799999999
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-08 Score=75.30 Aligned_cols=87 Identities=21% Similarity=0.244 Sum_probs=59.2
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
...++|.+++|+|+.+++......+.|...+.. .++|+++|+||+|+.+.. ...++.... ...++.++.+|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLALY-----RAIGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHHH-----HHCCCeEEEEe
Confidence 468999999999998876655554434333333 578999999999996321 111122221 12234688999
Q ss_pred cCCCCChHHHHHHHHH
Q 029675 160 ATSGEGLYEGLDWLSN 175 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~ 175 (189)
|+++.|++++++.+..
T Consensus 149 A~~g~gi~~L~~~l~g 164 (298)
T PRK00098 149 AKEGEGLDELKPLLAG 164 (298)
T ss_pred CCCCccHHHHHhhccC
Confidence 9999999999987643
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=5e-08 Score=74.89 Aligned_cols=89 Identities=19% Similarity=0.127 Sum_probs=63.7
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccC
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
..++|.+++|+++....++..+..|+.... . .++|+++|+||+|+.+......+..... .+...++.++.+||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-T---LGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-h---cCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 457999999999987778888877766443 2 5789999999999976432222221111 112234578899999
Q ss_pred CCCChHHHHHHHHHH
Q 029675 162 SGEGLYEGLDWLSNN 176 (189)
Q Consensus 162 ~~~~i~~~~~~l~~~ 176 (189)
++.|++++++.+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988764
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.5e-08 Score=73.49 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=62.9
Q ss_pred hhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEE
Q 029675 79 RHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (189)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
...+.++|.+++|+|+.++. ++..+..|+..... .++|+++|+||+|+.+.......... ....++.++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~-----~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVE-----ALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHH-----HHhCCCeEEE
Confidence 44578999999999999887 77777776655443 47899999999999754211111111 1113357889
Q ss_pred cccCCCCChHHHHHHHHH
Q 029675 158 TCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~ 175 (189)
+||+++.|+++++..+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999887764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.4e-08 Score=68.63 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=39.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc--cCCcCceEEEEEEcCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (189)
...++++++|.+|+|||||+|++.+..+... .+.+......+..+ ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 3457999999999999999999998776432 22222333333333 46899999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-08 Score=69.61 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=37.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc----------cccCCcCceEEEEEEcCEEEEEEEcCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV----------TTIPTIGFNVETVEYKNISFTVWDVGG 70 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~----------~~~~t~~~~~~~~~~~~~~~~i~D~~g 70 (189)
+..+++++|.+|+|||||+|+|.+.... +..|.+......+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 4578999999999999999999875421 22332222233333332 579999999
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.5e-08 Score=76.54 Aligned_cols=140 Identities=15% Similarity=0.107 Sum_probs=89.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
..|-++|+|+||+||||||.+|+......+...+.-.+..+..+...++++.+| .+..++. ....-+|.+++++|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~mi-DvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECP--SDLHQMI-DVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeCh--HHHHHHH-hHHHhhheeEEEeccc
Confidence 457888999999999999999875543333333333334466788899999999 3344433 3446699999999986
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCccccC--cceEEEEcccCC
Q 029675 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQ--RHWYIQSTCATS 162 (189)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~ 162 (189)
-. |+--...+..++.... -+.++-|+|+.|+.. ..........+...++.. ++..+|..|-..
T Consensus 145 fG--fEMETmEFLnil~~HG--mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 145 FG--FEMETMEFLNILISHG--MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred cC--ceehHHHHHHHHhhcC--CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 32 3222233455555432 345788999999864 445666666555554432 455566666443
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.2e-08 Score=78.98 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=78.0
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC------------ccc---ccCCcCceEEE--EE--EcCEEEEEEEcCCCCCc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IVT---TIPTIGFNVET--VE--YKNISFTVWDVGGQDKI 74 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~------------~~~---~~~t~~~~~~~--~~--~~~~~~~i~D~~g~~~~ 74 (189)
+..-.+++++.+.+.|||||++.|+... |.+ ...+.++.... +. .+++.++++|+||+-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 3455789999999999999999996432 221 12344443322 22 37899999999999999
Q ss_pred hhchhhhccCCCEEEEEEECCCc---ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
.....+..+-+|+++.++|+... .++.-+++.|. .+..+++|+||+|
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--------~~~~~~lvinkid 135 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--------EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--------ccCceEEEEehhh
Confidence 99999999999999999999753 23333333222 3455799999999
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-08 Score=73.44 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=92.1
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcCceE--EEEEEcCEEEEEEEcCC----------CCCchhch
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYKNISFTVWDVGG----------QDKIRPLW 78 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~~--~~~~~~~~~~~i~D~~g----------~~~~~~~~ 78 (189)
+..+..++++.|.+++|||||+|.+...... ...++.+..- ..+. -+-.+.+.|.|| .+++..+.
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~-v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH-VGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee-ccceEEEEecCCcccccCCccCcchHhHhH
Confidence 3577899999999999999999999876644 1222222211 1121 234788999999 23445556
Q ss_pred hhhccCCCE---EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhhC--Ccc
Q 029675 79 RHYFQNTQG---LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKLG--LHS 147 (189)
Q Consensus 79 ~~~~~~~d~---~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------~~~~~~~~~--~~~ 147 (189)
..|+...+- +++++|++- .++.......+++.+ .+.|+.+|.||||...... ...+...+. ...
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASV--PIQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHhhhhhheeeeeeeccC--CCCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 666654443 344445432 345555555555555 6899999999999754311 111111000 000
Q ss_pred ccCcceEEEEcccCCCCChHHHHHHHH
Q 029675 148 LRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
.-....+.+.+|+.++.|++++.-.+.
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehh
Confidence 011233455699999999988765443
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.5e-08 Score=74.53 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=42.0
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCce--EEEEEEcCEEEEEEEcCCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~g~~ 72 (189)
....++++|+|-||+|||||||+|.+.......+..|.+ ...+.... .+.++||||--
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~-~i~LlDtPGii 188 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD-GIYLLDTPGII 188 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC-CeEEecCCCcC
Confidence 345689999999999999999999998876443333333 33333333 48999999953
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.5e-08 Score=72.67 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=39.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccc--cCCcCceEEEEEEcCEEEEEEEcCCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (189)
+.++++++|.||+|||||+|+|.+...... .|.+......+... ..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 468999999999999999999998764432 33222222333332 26899999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-07 Score=68.88 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=87.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc-------CCccc----------ccCCcCceEEEEEEc--CEEEEEEEcCCCCCch
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL-------GEIVT----------TIPTIGFNVETVEYK--NISFTVWDVGGQDKIR 75 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~-------~~~~~----------~~~t~~~~~~~~~~~--~~~~~i~D~~g~~~~~ 75 (189)
...++|.-||+...|||||...+.. .++.. .-..+.++..++.+. ...+.=.|+||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4568999999999999999766632 11111 112344444555554 4556678999999999
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--------hHHHhhhCCcc
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--------AEITDKLGLHS 147 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--------~~~~~~~~~~~ 147 (189)
.........-|+.|+|+..+|..-.+.- + ...+.++. .-..+++.+||.|+.++.+. +++...++.
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTr-E-HlLLArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf-- 205 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTR-E-HLLLARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF-- 205 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchH-H-HHHHHHHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC--
Confidence 8888888889999999999875433221 1 11222221 12558999999999865432 223333333
Q ss_pred ccCcceEEEEcccC
Q 029675 148 LRQRHWYIQSTCAT 161 (189)
Q Consensus 148 ~~~~~~~~~~~Sa~ 161 (189)
.....+++.-||.
T Consensus 206 -~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 206 -DGDNTPVIRGSAL 218 (449)
T ss_pred -CCCCCCeeecchh
Confidence 3344566666644
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=7e-08 Score=72.51 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=40.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc--cCCcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
...++++++|.||+|||||+|+|.+...... .|.+......+... ..+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCcC
Confidence 3568999999999999999999998775433 33222222333332 368899999963
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.64 E-value=8e-07 Score=64.41 Aligned_cols=84 Identities=17% Similarity=0.104 Sum_probs=57.6
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC--Cccc----ccCCcCceEEEEEE---cCEEEEEEEcCCCCCchh------chh
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT----TIPTIGFNVETVEY---KNISFTVWDVGGQDKIRP------LWR 79 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~~------~~~ 79 (189)
.+..-|.|+|++++|||+|+|++.+. .|.. ...|.++-...... .+..+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45567899999999999999999998 5541 13355555444444 357899999999643322 223
Q ss_pred hhccC--CCEEEEEEECCCcc
Q 029675 80 HYFQN--TQGLIFVVDSNDRD 98 (189)
Q Consensus 80 ~~~~~--~d~~i~v~d~~~~~ 98 (189)
..+.. ++++||..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 33334 88899888876443
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-07 Score=74.71 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=80.3
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCC-----ccc------------ccC----CcCceEEEEEEcCEEEEEEEcCCCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----IVT------------TIP----TIGFNVETVEYKNISFTVWDVGGQDK 73 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~-----~~~------------~~~----t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (189)
++..+|.++-+-.+||||+.++.+... +.+ ... |+...-..+.++++++.++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 356789999999999999999886422 100 011 11122234556789999999999999
Q ss_pred chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
|-......++-.|+.++|++....-. ......|.+..+ .+.|.+..+||+|...
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred EEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 99988889999999999999864311 122234544443 5899999999999653
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.3e-07 Score=71.61 Aligned_cols=119 Identities=15% Similarity=0.311 Sum_probs=74.5
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcCce-----------------------------------
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN----------------------------------- 52 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~----------------------------------- 52 (189)
.+...+..-||++.|..++||||++|.++..+.. ...|++.+.
T Consensus 102 ~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~ 181 (749)
T KOG0448|consen 102 DEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALK 181 (749)
T ss_pred HHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcC
Confidence 3445678899999999999999999999764421 111111000
Q ss_pred ---------EEEEEE-c------CEEEEEEEcCCCC---CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 029675 53 ---------VETVEY-K------NISFTVWDVGGQD---KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 113 (189)
Q Consensus 53 ---------~~~~~~-~------~~~~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 113 (189)
...+=+ + .-.+.+.|.||-. ...+-...+...+|++|+|.+..+ .++.....+......
T Consensus 182 ~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 182 PDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSE 259 (749)
T ss_pred cccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhc
Confidence 000000 1 1257789999943 455556677789999999999854 344444434333333
Q ss_pred CCCCCCeEEEEEeCCCCCCC
Q 029675 114 DELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 114 ~~~~~~p~ivv~nK~D~~~~ 133 (189)
.++-++++.||+|....
T Consensus 260 ---~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 260 ---EKPNIFILNNKWDASAS 276 (749)
T ss_pred ---cCCcEEEEechhhhhcc
Confidence 35557788888898643
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-07 Score=63.04 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=57.9
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
.+..+|++++|+|+.++..- ....+...+... ..+.|+++|+||+|+.+......+...+... .....+.+||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEeec
Confidence 45789999999999876321 112233333221 1458999999999997543233333333221 1223568999
Q ss_pred CCCCChHHHHHHHHHHH
Q 029675 161 TSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~ 177 (189)
+.+.|++++++.+.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999987654
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.58 E-value=3e-07 Score=62.85 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=38.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG 70 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g 70 (189)
....+++++|.+|+|||||+|.+.+.... +..+ |..... +... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-CCEEEEECCC
Confidence 45789999999999999999999986632 2222 333322 2222 4689999998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-07 Score=62.81 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=54.0
Q ss_pred CEEEEEEECCCcccHHHHHHHHH-HHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCC
Q 029675 86 QGLIFVVDSNDRDRVVEARDELH-RMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (189)
|++++|+|+.++.+... .++. ..+.. .++|+++|+||+|+.+.....++...+... ....++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 78999999987654332 2233 23332 578999999999996542222222122111 12356789999999
Q ss_pred ChHHHHHHHHHHH
Q 029675 165 GLYEGLDWLSNNI 177 (189)
Q Consensus 165 ~i~~~~~~l~~~~ 177 (189)
|++++.+.+.+..
T Consensus 72 gi~~L~~~i~~~~ 84 (155)
T cd01849 72 GIEKKESAFTKQT 84 (155)
T ss_pred ChhhHHHHHHHHh
Confidence 9999999887654
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.3e-07 Score=68.94 Aligned_cols=151 Identities=22% Similarity=0.241 Sum_probs=92.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-----------------ccC-------CcCceE--EEEEE-----------
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TIP-------TIGFNV--ETVEY----------- 58 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-----------------~~~-------t~~~~~--~~~~~----------- 58 (189)
-+++++++|...+|||||+--|..++... ... +.+++- ..+++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 35899999999999999987775543210 001 111111 01111
Q ss_pred -cCEEEEEEEcCCCCCchhchhhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 029675 59 -KNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (189)
Q Consensus 59 -~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 135 (189)
..--+.++|.+|+.+|.......+. ..|...+|+++.....+..- ...-++.- -++|++++.+|+|+.+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr--EHLgl~~A---L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR--EHLGLIAA---LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH--HHHHHHHH---hCCCeEEEEEeeccccchh
Confidence 1235789999999999887655554 37889999998765444322 11122211 4899999999999987633
Q ss_pred HhH----HHhhhC---------------------CccccCcceEEEEcccCCCCChHHHHH
Q 029675 136 AAE----ITDKLG---------------------LHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 136 ~~~----~~~~~~---------------------~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
.+. +...+. ......+..+++.+|+.+|+|++-+..
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 222 221111 111123456889999999999875543
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.1e-07 Score=64.60 Aligned_cols=87 Identities=20% Similarity=0.097 Sum_probs=59.4
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcCceE-EEEEEcCEEEEEEEcCCCC-------CchhchhhhccCCCE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV-ETVEYKNISFTVWDVGGQD-------KIRPLWRHYFQNTQG 87 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~~-~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~~d~ 87 (189)
-++.++|-|.+||||++..+.+.... ++.-|+=..+ ...+++.-++++.|.||-- ..........+.|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 38899999999999999998865422 2222221111 2244677899999999832 223334566788999
Q ss_pred EEEEEECCCcccHHHHH
Q 029675 88 LIFVVDSNDRDRVVEAR 104 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~ 104 (189)
+++|.|+..|-+...+.
T Consensus 140 i~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKII 156 (358)
T ss_pred EEEEeeccCcccHHHHH
Confidence 99999998776554443
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.9e-08 Score=73.85 Aligned_cols=97 Identities=24% Similarity=0.301 Sum_probs=63.7
Q ss_pred CCCchhchhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccc
Q 029675 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSL 148 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~ 148 (189)
+++|+.+...+.+.++++++|+|+.+.. ++. ..+.+.. .+.|+++|+||+|+.+.. ..+++..... ..+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~---~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI---PELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCcc---HHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHH
Confidence 5678888888889999999999997643 222 2222322 267899999999986432 2233222110 001
Q ss_pred cCcce---EEEEcccCCCCChHHHHHHHHHH
Q 029675 149 RQRHW---YIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
+..++ .++.+||++|.|++++++.+.+.
T Consensus 121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 11111 37789999999999999998654
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.3e-07 Score=68.20 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=57.0
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-ccc--CCcCceEEEEE------------------EcCEEEEEEEcCCC----
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVE------------------YKNISFTVWDVGGQ---- 71 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~--~t~~~~~~~~~------------------~~~~~~~i~D~~g~---- 71 (189)
.+++.++|.||+|||||+|.+...... .+. .|++.+...+. .....+.++|.+|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999876632 222 24444433221 22457899999983
Q ss_pred ---CCchhchhhhccCCCEEEEEEECCC
Q 029675 72 ---DKIRPLWRHYFQNTQGLIFVVDSND 96 (189)
Q Consensus 72 ---~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (189)
+.......+-+|.+|+++-|++..+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3445556677789999999999863
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.3e-07 Score=68.53 Aligned_cols=78 Identities=18% Similarity=0.112 Sum_probs=56.2
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCc-c--cc-cCCcCceEEEEEEcC-----------------EEEEEEEcCCCCC---
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEI-V--TT-IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDK--- 73 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~-~--~~-~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~--- 73 (189)
+++.++|.|++|||||++.+.+... . .+ ..|+..+...+...+ ..+.+.|.||--.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999988765 3 22 224444444444422 4689999999432
Q ss_pred ----chhchhhhccCCCEEEEEEECC
Q 029675 74 ----IRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 74 ----~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
........++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 3334556678999999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.2e-07 Score=67.56 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=60.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-ccc--CCcCceEEEEEE-----------------cCEEEEEEEcCCC---
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEY-----------------KNISFTVWDVGGQ--- 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~--~t~~~~~~~~~~-----------------~~~~~~i~D~~g~--- 71 (189)
.+.+++.++|.|++|||||+|.+...... .+. .|++.+...+.. ....++++|++|-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 46789999999999999999999876643 333 366655554433 2357899999983
Q ss_pred ----CCchhchhhhccCCCEEEEEEECCC
Q 029675 72 ----DKIRPLWRHYFQNTQGLIFVVDSND 96 (189)
Q Consensus 72 ----~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (189)
+....-..+.++++|+++-|++..+
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2344446667789999999988753
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-07 Score=64.15 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=58.6
Q ss_pred hhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceE
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
.......+.++|++++|+|+.++..... ..+.... .+.|+++++||+|+.+.....++.+.+.. ....
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-----~~~~ 77 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-----KGEK 77 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-----cCCe
Confidence 3345566788999999999976543211 1122222 35789999999999644222122121111 1124
Q ss_pred EEEcccCCCCChHHHHHHHHHHH
Q 029675 155 IQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
++.+||+++.|++++.+.+.+.+
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHH
Confidence 67899999999999999988875
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.7e-08 Score=75.57 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=82.8
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC-----------------cccccC----CcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE-----------------IVTTIP----TIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~-----------------~~~~~~----t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
..+-.+|.++.+..+||||...|++.-. |..... |+...-..++++++.+.++||||+-
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 3456789999999999999999986411 111111 2222234577899999999999999
Q ss_pred CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+|+-....+++--|+++.|||.+-.-.-+. ...|.+.-+ .++|-+.++||+|...
T Consensus 114 df~leverclrvldgavav~dasagve~qt-ltvwrqadk----~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQT-LTVWRQADK----FKIPAHCFINKMDKLA 168 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccce-eeeehhccc----cCCchhhhhhhhhhhh
Confidence 999999999999999999999874322222 233433322 5899999999999754
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-06 Score=75.50 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=64.3
Q ss_pred EEEEcCCCCChHHHHHhHhcCCcccc-----cCC--cCceEEEEEEcCEEEEEEEcCCCC--------Cchhchhhhc--
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIVTT-----IPT--IGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYF-- 82 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~~~-----~~t--~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~-- 82 (189)
.+|+|++|+||||++.+- +-.++-. ..+ .+-...+--+-..+-.++||+|.. .....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 589999999999999876 4344311 111 110000000122356699999932 1223344443
Q ss_pred -------cCCCEEEEEEECCCcc-----cH----HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 83 -------QNTQGLIFVVDSNDRD-----RV----VEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 83 -------~~~d~~i~v~d~~~~~-----s~----~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
+..+++|+++|+.+.- .. ..++..+.++..... ...|+.|++||+|+...
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhcC
Confidence 3599999999986421 11 122233333333322 58999999999998743
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.41 E-value=7e-07 Score=66.79 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=60.7
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEE
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
......+..+|++++|+|+..+.+... ..+...+ .+.|+++|+||+|+.+......+.+.+.. .+..+
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~v 80 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKA 80 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeE
Confidence 335566788999999999976543222 2233333 25789999999999654222333222211 12356
Q ss_pred EEcccCCCCChHHHHHHHHHHHhh
Q 029675 156 QSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
+.+|++++.|++++.+.+.+.+.+
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHHH
Confidence 789999999999999988877654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.5e-06 Score=64.38 Aligned_cols=145 Identities=21% Similarity=0.250 Sum_probs=77.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhc----CC--cc----c-ccC-----------CcCceEEEE-----------------
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL----GE--IV----T-TIP-----------TIGFNVETV----------------- 56 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~----~~--~~----~-~~~-----------t~~~~~~~~----------------- 56 (189)
+...|+++|++|+||||++.++.. .. +. . ... ..+..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 457899999999999998777643 11 10 0 000 011111100
Q ss_pred EEcCEEEEEEEcCCCCCchhchhhh------ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 029675 57 EYKNISFTVWDVGGQDKIRPLWRHY------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (189)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 130 (189)
...+..+.++||+|........... ....|.+++|.|+.....-......+...+ .+--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecC
Confidence 1124569999999976533221111 125889999999864322111122222221 234788999998
Q ss_pred CCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 131 PNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 131 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
...- ..-.+....+.+ +.| ++ +|++++++...=.+.+
T Consensus 292 ~~~~G~~ls~~~~~~~P------i~~--i~--~Gq~v~Dl~~~~~~~~ 329 (336)
T PRK14974 292 DAKGGAALSIAYVIGKP------ILF--LG--VGQGYDDLIPFDPDWF 329 (336)
T ss_pred CCCccHHHHHHHHHCcC------EEE--Ee--CCCChhhcccCCHHHH
Confidence 6432 222233333332 234 33 7888887765433333
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-05 Score=64.55 Aligned_cols=92 Identities=14% Similarity=0.224 Sum_probs=60.2
Q ss_pred EEEEEEcCCC-------------CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 029675 62 SFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (189)
Q Consensus 62 ~~~i~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (189)
.+.+.|.||- +...++...+..+.+++|+|+---. .+.-+.....++...+-.+...|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 6889999992 2345568889999999999986322 22222223333443333578899999999
Q ss_pred CCCCC--CCHhHHHhhhCCccccCcceEEE
Q 029675 129 DLPNA--MNAAEITDKLGLHSLRQRHWYIQ 156 (189)
Q Consensus 129 D~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
|+... .++..+.+.+.-..+.-.-..||
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYf 519 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYF 519 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhccee
Confidence 99754 46788888776555533333343
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.3e-07 Score=68.55 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=35.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccc--c---------CCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTT--I---------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~--~---------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
-++|+|.+|+|||||+|+|.+.....+ . .|+......+..+ ..++||||-..+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 379999999999999999998653311 1 1223333333222 3599999975554
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.7e-06 Score=60.31 Aligned_cols=123 Identities=18% Similarity=0.285 Sum_probs=71.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc----------ccCCcCceEEE--EEEcC--EEEEEEEcCCCCCc-------h
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT----------TIPTIGFNVET--VEYKN--ISFTVWDVGGQDKI-------R 75 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~----------~~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~-------~ 75 (189)
.|+|+|+|.+|.||||++|++....... ...|+.+...+ +..++ .+++++||||--+. +
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 6999999999999999999997654321 11233333322 22333 57889999993211 0
Q ss_pred h-------chhhhc------------c--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 76 P-------LWRHYF------------Q--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 76 ~-------~~~~~~------------~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
. ....|+ . ..|+++|.+.++.. ++..+.-.+..-+.+ -.-++-|+-|.|-..-+
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecccccHH
Confidence 0 011111 1 47888888887742 344443333333332 23367778899966555
Q ss_pred CHhHHHhhhC
Q 029675 135 NAAEITDKLG 144 (189)
Q Consensus 135 ~~~~~~~~~~ 144 (189)
+..++.+...
T Consensus 201 Er~~FkqrI~ 210 (336)
T KOG1547|consen 201 ERSAFKQRIR 210 (336)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.9e-06 Score=62.19 Aligned_cols=140 Identities=20% Similarity=0.254 Sum_probs=75.3
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcC------Ccc----cc-c-----------CCcCceEEEE-----------------
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG------EIV----TT-I-----------PTIGFNVETV----------------- 56 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~------~~~----~~-~-----------~t~~~~~~~~----------------- 56 (189)
+...++++|++|+||||++..+... .+. +. . ...+..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999888531 100 00 0 0011111111
Q ss_pred EEcCEEEEEEEcCCCCCchhc----hhhh--------ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 029675 57 EYKNISFTVWDVGGQDKIRPL----WRHY--------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (189)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (189)
...++.+.++||||....... ...+ -..++..++|+|++.. ...+.+ ....... -.+.-++
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEE
Confidence 114567999999997543222 1111 1247889999999743 222222 2222211 1345789
Q ss_pred EeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 125 ANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 125 ~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
.||.|....- ..-.+....+.+ +.| ++ +|++++++...
T Consensus 266 lTKlD~t~~~G~~l~~~~~~~~P------i~~--v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADELGIP------IKF--IG--VGEGIDDLQPF 304 (318)
T ss_pred EECCCCCCCccHHHHHHHHHCCC------EEE--Ee--CCCChhhCccC
Confidence 9999965332 223333333333 233 33 77888766543
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=58.56 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=47.9
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcc
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
..+..+|++++|+|+.++.+... ..+...+.... .++|+++++||+|+.+.....++...+. ..+..++.+|
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~ii~iS 78 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVVVFFS 78 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeEEEEE
Confidence 45678999999999987654321 12333332211 4789999999999965432223333222 1224577899
Q ss_pred cCCCCC
Q 029675 160 ATSGEG 165 (189)
Q Consensus 160 a~~~~~ 165 (189)
|.++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 988764
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.30 E-value=8e-06 Score=60.88 Aligned_cols=144 Identities=18% Similarity=0.164 Sum_probs=77.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcC------Ccc----c-cc-----------CCcCceEEEE-----------------
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG------EIV----T-TI-----------PTIGFNVETV----------------- 56 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~------~~~----~-~~-----------~t~~~~~~~~----------------- 56 (189)
+...++++|++|+||||.+..+... ... + +. .-.+..+...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 3467889999999999998877421 110 0 00 0111111110
Q ss_pred EEcCEEEEEEEcCCCCCchhchhh-------h-----ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 029675 57 EYKNISFTVWDVGGQDKIRPLWRH-------Y-----FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (189)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~-------~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (189)
...++.+.++||||.......... . -..+|.+++|+|+... .+... ......+. -.+.-++
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~----~~~~g~I 223 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEA----VGLTGII 223 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhh----CCCCEEE
Confidence 013578999999997654333211 1 1248999999999732 22222 22222221 1245888
Q ss_pred EeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHH
Q 029675 125 ANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 125 ~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
.||.|..... ..-.+....+.+ +.| ++ +|++++++...=.+.
T Consensus 224 lTKlDe~~~~G~~l~~~~~~~~P------i~~--~~--~Gq~~~dl~~~~~~~ 266 (272)
T TIGR00064 224 LTKLDGTAKGGIILSIAYELKLP------IKF--IG--VGEKIDDLAPFDADW 266 (272)
T ss_pred EEccCCCCCccHHHHHHHHHCcC------EEE--Ee--CCCChHhCccCCHHH
Confidence 9999975432 223333333332 233 33 777777665443333
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.1e-07 Score=60.84 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~ 41 (189)
-.++++|++|+|||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 678999999999999999999874
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.4e-06 Score=64.27 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=88.1
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-------------------cccCCcCceEEEEE--------------------
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-------------------TTIPTIGFNVETVE-------------------- 57 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-------------------~~~~t~~~~~~~~~-------------------- 57 (189)
+.+++++|...+|||||+--|.+++.. ....+.+.++.-++
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 479999999999999998777553311 00112222221111
Q ss_pred --EcC-EEEEEEEcCCCCCchhchhhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 58 --YKN-ISFTVWDVGGQDKIRPLWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 58 --~~~-~~~~i~D~~g~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
.+. --+.++|.+|++.|....... -+..|...+++-.+-. +-.+.....-+... -..|+++|.+|+|++.
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALa---L~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALA---LHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhh---hcCcEEEEEEeeccCc
Confidence 111 247899999999987764333 2357777777766421 11111111111111 4789999999999987
Q ss_pred CCCHhHHHh----hhC---------------------CccccCcceEEEEcccCCCCChHHHHHH
Q 029675 133 AMNAAEITD----KLG---------------------LHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 133 ~~~~~~~~~----~~~---------------------~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
....++-.. .+. ..+....-|++|.+|-.+|+|++.+...
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 643333222 111 1222234578899999999999766543
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.2e-06 Score=65.65 Aligned_cols=56 Identities=14% Similarity=0.305 Sum_probs=37.3
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC-----c--ccccCCcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE-----I--VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~-----~--~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
+..+++++|.+|+|||||+|+|.... . .+..|.+......+...+ ...++||||-.
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCcc
Confidence 34689999999999999999998543 1 123343333333344322 24799999964
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.6e-06 Score=65.62 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~ 41 (189)
.++|+|++|+|||||+|.|.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 48999999999999999999765
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=66.89 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=38.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCc-------ccccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
..+++++|.+|+|||||+|++.+... .+..|.+......+... ..+.++||||-...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGIINS 217 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-CCCEEEECCCCCCh
Confidence 46999999999999999999987532 12333333333344432 24679999996533
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.1e-06 Score=55.71 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=36.5
Q ss_pred EEEEEEEcCCCCCchhchhh--------hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 029675 61 ISFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 130 (189)
....++|+||-..-...... ..-..+.+++++|+.+..........+...+... + ++++||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d---~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---D---RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---C---EEEEecccC
Confidence 45678999997543333221 2235899999999864322211112233333322 2 789999996
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=2e-06 Score=64.70 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=64.1
Q ss_pred cCCCC-CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCc
Q 029675 68 VGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (189)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 146 (189)
.|||. .........+..+|++++|+|+..+.+... ..+...+. +.|+++|+||+|+.+....+.+...+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence 45543 223335566788999999999976543221 22333332 578999999999965422222322221
Q ss_pred cccCcceEEEEcccCCCCChHHHHHHHHHHHhhc
Q 029675 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
..+..++.+|++++.|++++.+.+.+.+.+.
T Consensus 78 ---~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 78 ---EQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred ---HcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 1123567899999999999999888776543
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.2e-06 Score=64.46 Aligned_cols=109 Identities=21% Similarity=0.145 Sum_probs=62.8
Q ss_pred CceEEEEcCCCCChHHHHHhHh------cCCcc-----cccC-----------CcCceEEEEE-----------------
Q 029675 17 EMRILMVGLDAAGKTTILYKLK------LGEIV-----TTIP-----------TIGFNVETVE----------------- 57 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~------~~~~~-----~~~~-----------t~~~~~~~~~----------------- 57 (189)
...|+++|.+|+||||++.+|. +.... .+.+ ..++.+....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 5679999999999999998885 22211 1110 1122222111
Q ss_pred EcCEEEEEEEcCCCCCchhchhh----h--ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 58 YKNISFTVWDVGGQDKIRPLWRH----Y--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
..++.+.++||||.......... + ...++.+++|+|+.-...-......+.+. -.+.-+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence 02568999999997544322111 1 22578999999986432222222223221 23567889999975
Q ss_pred C
Q 029675 132 N 132 (189)
Q Consensus 132 ~ 132 (189)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-06 Score=68.49 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=43.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcccccCCcCce--EEEEEEcCEEEEEEEcCCC
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~g~ 71 (189)
.+.|.+||-||+||||+||.|+|.+..+...|.|-. +.++-.. -.+.++|+||-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-PSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-CCceecCCCCc
Confidence 489999999999999999999999988776666643 4444433 37899999993
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=54.31 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=37.5
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
++.+.++||+|..... ..++..+|.+++|..++-.+.+.-.+- ..+.. -=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA---GIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh---hHhhh------cCEEEEeCCC
Confidence 4678999999865332 347788999999999874333333222 22221 1288899987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.20 E-value=4e-06 Score=61.57 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-----------ccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
-.++++|.+|+|||||+|.|.+..... ...|+......+ .+ -.++||||-..+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 478999999999999999998764321 112333333333 22 379999996543
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.5e-05 Score=60.52 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=54.7
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccC
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
..++|.+++|+++..+-....+..++..... .+.+.++|+||+|+.+... +........ ..++.++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~~-~~~~~~~~~----~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDAE-EKIAEVEAL----APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCHH-HHHHHHHHh----CCCCcEEEEECC
Confidence 5789999999999743333333333333332 4677789999999975411 111111111 234567889999
Q ss_pred CCCChHHHHHHHH
Q 029675 162 SGEGLYEGLDWLS 174 (189)
Q Consensus 162 ~~~~i~~~~~~l~ 174 (189)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999888874
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.7e-06 Score=62.35 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=70.7
Q ss_pred EEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 029675 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139 (189)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 139 (189)
.+.+.|+||++-..........--|++++++..+.++.- +.-.-.-.++.+ -+.++++-||.|+..+....+.
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~-----LkhiiilQNKiDli~e~~A~eq 200 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK-----LKHIIILQNKIDLIKESQALEQ 200 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh-----hceEEEEechhhhhhHHHHHHH
Confidence 578999999986655544444446777887777643311 111111112221 2458999999999876543332
Q ss_pred HhhhCCccc---cCcceEEEEcccCCCCChHHHHHHHHHHHhhcc
Q 029675 140 TDKLGLHSL---RQRHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 140 ~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
.+++. .+. -..+.+++++||.-..||+-+.+.+++++--..
T Consensus 201 ~e~I~-kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 201 HEQIQ-KFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred HHHHH-HHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 22221 111 124557889999999999999999999875443
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.9e-06 Score=62.94 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=56.0
Q ss_pred CchhchhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccC
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQ 150 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~ 150 (189)
.|...........+.+++|+|+.+.. ++. ..+.... .+.|+++|+||+|+.+.. ..+++..... ...+.
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~---~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k~ 128 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNGSWI---PGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAKE 128 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCCchh---HHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHHh
Confidence 45554444433344999999997633 322 2233332 267899999999996532 2222221110 00111
Q ss_pred cce---EEEEcccCCCCChHHHHHHHHHH
Q 029675 151 RHW---YIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 151 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
.++ .++.+||+++.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 111 46789999999999999998765
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=57.12 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=59.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCC------cc-----ccc-----------CCcCceEEEE-----------------EE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGE------IV-----TTI-----------PTIGFNVETV-----------------EY 58 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~------~~-----~~~-----------~t~~~~~~~~-----------------~~ 58 (189)
..|+++|++|+||||.+-+|.... +. .+. ...++.+... ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 458999999999999998874311 00 000 0112221111 11
Q ss_pred cCEEEEEEEcCCCCCchhch----hhhc--cCCCEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 59 KNISFTVWDVGGQDKIRPLW----RHYF--QNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~----~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
++..+.++||||........ ..+. ...+-+++|.+++.. +....... +...+. +-=++.||.|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~-~~~~~~-------~~~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA-FYEAFG-------IDGLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH-HHHHSS-------TCEEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH-Hhhccc-------CceEEEEeecCC
Confidence 34679999999976554321 1111 158899999998743 22222211 222211 125679999976
Q ss_pred CC
Q 029675 132 NA 133 (189)
Q Consensus 132 ~~ 133 (189)
..
T Consensus 154 ~~ 155 (196)
T PF00448_consen 154 AR 155 (196)
T ss_dssp ST
T ss_pred CC
Confidence 43
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-05 Score=59.09 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=71.3
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccccc-----CCcCceEEEEEE----cCEEEEEEEcCCC-------CCchhc--
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY----KNISFTVWDVGGQ-------DKIRPL-- 77 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~~----~~~~~~i~D~~g~-------~~~~~~-- 77 (189)
=.|+|+.+|..|.|||||+++|.+-.+...+ |+......+++. -..++.++||.|. +.|...
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 3599999999999999999999998876543 333333333333 2357899999982 122111
Q ss_pred ------------------hhhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 78 ------------------WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 78 ------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
....++ ..|+++|.+.++. .++..+......-+. .+..+|-++-|.|-....
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHH
Confidence 111122 4778888888773 356665554444444 244466667788866543
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.1e-05 Score=59.20 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=35.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc--c---------CCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT--I---------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~--~---------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
..++++|++|+|||||+|.|.+...... . .|... ..+.... ...++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~--~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHR--ELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceE--EEEEcCC-CCEEEECCCCCccC
Confidence 5799999999999999999987653311 1 11111 2222221 23689999986554
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1e-05 Score=60.29 Aligned_cols=54 Identities=15% Similarity=0.088 Sum_probs=34.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-----------cccCCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-----------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-----------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
-.+++|.+|+|||||+|+|.++... ..+.|+......+.. .=.++||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~---gG~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG---GGWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC---CCEEEeCCCCCccC
Confidence 6799999999999999999874321 112233332333321 23689999976554
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00018 Score=55.79 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=63.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccC-----Cc------------------CceEEEE-----------EEcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP-----TI------------------GFNVETV-----------EYKN 60 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~-----t~------------------~~~~~~~-----------~~~~ 60 (189)
+.-.|+++||.|+||||-+.+|...... .... |+ ++...-+ ...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 4788999999999999998877543221 0011 11 1111110 1135
Q ss_pred EEEEEEEcCCCCCchhch----hhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 61 ISFTVWDVGGQDKIRPLW----RHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
..+.++||.|...+.... ..++. ...-+.+|++++.. ...+...+.++..- ..-=+++||.|-...
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEcccccCc
Confidence 679999999987665542 22222 34556678887643 34444444444321 122567899997644
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=2e-05 Score=59.62 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~ 42 (189)
...++++|++|+|||||+|.|.+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC
Confidence 45789999999999999999987653
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=57.18 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=64.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCc-------c---c---ccC-----------CcCceEEEEE-----------EcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEI-------V---T---TIP-----------TIGFNVETVE-----------YKN 60 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~-------~---~---~~~-----------t~~~~~~~~~-----------~~~ 60 (189)
+.-.++++|++|+||||++.+|..... . + +.. ..++.+.... ..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 456889999999999999988864211 0 0 000 0122222111 135
Q ss_pred EEEEEEEcCCCCCchhch---hhhc---cCCCEEEEEEECCC-cccHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCCCC
Q 029675 61 ISFTVWDVGGQDKIRPLW---RHYF---QNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELR-DAVLLVFANKQDLPN 132 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~---~~~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~ 132 (189)
..+.++||+|........ ...+ ..+.-.++|++.+. .+........+.......... ..+-=++.||.|-..
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 678999999976443321 1111 23456689999874 444444444444432211000 012357789999764
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00015 Score=50.38 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=38.8
Q ss_pred CEEEEEEEcCCCCCchhch----hhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
+..+.++|+||........ ... ....+.+++|+|..... ...+......... + ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 4568899999975332211 111 13499999999986432 2223333333221 2 35677899997643
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00018 Score=54.90 Aligned_cols=141 Identities=21% Similarity=0.189 Sum_probs=76.6
Q ss_pred EEEEcCCCCChHHHHHhHhcCCc-----------c----c---ccC---------CcCceEEEEEE-------------c
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEI-----------V----T---TIP---------TIGFNVETVEY-------------K 59 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~-----------~----~---~~~---------t~~~~~~~~~~-------------~ 59 (189)
.++.|-=|||||||++.++.+.- . . ... +.|+-..+++. +
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 46778899999999999976431 1 0 011 12222222211 2
Q ss_pred CEEEEEEEcCCCCCchhchhhhcc--------CCCEEEEEEECCCcccHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQ--------NTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDL 130 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 130 (189)
.....++.+.|-..-......+.. ..|+++-|+|+..-..... ..+.+...+.-. =++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccC
Confidence 245678888885544333222222 3788999999875332222 333344443332 2899999999
Q ss_pred CCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
.+....+.+....... .+...++.++. .+....+++
T Consensus 158 v~~~~l~~l~~~l~~l---np~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 158 VDAEELEALEARLRKL---NPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CCHHHHHHHHHHHHHh---CCCCeEEEccc-cCCCHHHhh
Confidence 9875544444433322 23346666666 333443333
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00063 Score=47.30 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCChHHHHHhHhc
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~ 39 (189)
.+|+++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998643
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.7e-05 Score=58.72 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=66.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC------c--cc---cc-----------CCcCceEEEEE--------------Ec
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE------I--VT---TI-----------PTIGFNVETVE--------------YK 59 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~------~--~~---~~-----------~t~~~~~~~~~--------------~~ 59 (189)
+...|+++|+.|+||||++..|...- . .+ +. ...++.+.... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34789999999999999998885311 0 00 00 01122211110 01
Q ss_pred CEEEEEEEcCCCCCchhc----hhhhc--cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
+..+.++||+|....... ....+ ...+.+++|+|++-. ...+......+.. -.+-=+++||.|-...
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 357899999997653322 22222 246788999987522 1233333333321 1234678999997643
Q ss_pred C-CHhHHHhhhCC
Q 029675 134 M-NAAEITDKLGL 145 (189)
Q Consensus 134 ~-~~~~~~~~~~~ 145 (189)
. ..-.+....++
T Consensus 393 ~G~iLni~~~~~l 405 (436)
T PRK11889 393 SGELLKIPAVSSA 405 (436)
T ss_pred ccHHHHHHHHHCc
Confidence 2 23334444443
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00025 Score=48.04 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=21.5
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
....||.+.|+||+||||++-++.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 3468999999999999999988763
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00036 Score=43.10 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=45.4
Q ss_pred EEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhc-hhhhccCCCEEEEEEECCC
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSND 96 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~ 96 (189)
+++.|..|+||||+...+...--. .+.....++ .+.++|+++....... .......+|.++++++...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~ 70 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA 70 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch
Confidence 678899999999998877532211 122222222 7999999987654432 1345567999999999864
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.2e-05 Score=54.08 Aligned_cols=108 Identities=20% Similarity=0.261 Sum_probs=63.0
Q ss_pred EEEEcCCCCChHHHHHhHhc-----CC-------ccc------ccCCcCceEEEEEE---------------------c-
Q 029675 20 ILMVGLDAAGKTTILYKLKL-----GE-------IVT------TIPTIGFNVETVEY---------------------K- 59 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~-----~~-------~~~------~~~t~~~~~~~~~~---------------------~- 59 (189)
+++.|-.|||||||+++++. .+ +.. .....+.....+.. .
T Consensus 3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~ 82 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence 58899999999999999983 11 110 00111222222211 1
Q ss_pred -CEEEEEEEcCCCCCchhc------hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 60 -NISFTVWDVGGQDKIRPL------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 60 -~~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
.....++.+.|...-... ... .-..+.+|.|+|+.+-.........+...+...+ ++++||+|+.+
T Consensus 83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~ 155 (178)
T PF02492_consen 83 ERPDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVS 155 (178)
T ss_dssp GC-SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHH
T ss_pred CCcCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCC
Confidence 346778888886544443 111 1248899999999664333444455555555432 89999999976
Q ss_pred CC
Q 029675 133 AM 134 (189)
Q Consensus 133 ~~ 134 (189)
..
T Consensus 156 ~~ 157 (178)
T PF02492_consen 156 DE 157 (178)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.78 E-value=4e-05 Score=42.50 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=27.5
Q ss_pred cCCCEEEEEEECCCccc--HHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 029675 83 QNTQGLIFVVDSNDRDR--VVEARDELHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
+-.++++|++|++..+. .+.....+..+...- .++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 44889999999997654 455555555554432 4899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00014 Score=57.70 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=73.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC------------ccccc---CCcCceEE--------EE------------EEcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE------------IVTTI---PTIGFNVE--------TV------------EYKN 60 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~------------~~~~~---~t~~~~~~--------~~------------~~~~ 60 (189)
+..++-++.+...|||||.++|.... |..+. ...++.+. ++ +..+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 44788999999999999999996421 22111 11111111 11 1134
Q ss_pred EEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
..++++|.||+-+|.+.....++-.|+.+.|+|-.+.--.+. ...+.+.+.+ .+.-+++.||.|..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHh----hccceEEeehhhHH
Confidence 678999999999999999999999999999999754322211 1234444443 33347889999953
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00028 Score=56.91 Aligned_cols=110 Identities=21% Similarity=0.289 Sum_probs=60.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcC--------Cc--ccc---c-----------CCcCceEEEEE-----------EcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG--------EI--VTT---I-----------PTIGFNVETVE-----------YKN 60 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~--------~~--~~~---~-----------~t~~~~~~~~~-----------~~~ 60 (189)
..-.|+|+|+.|+||||++..|... .+ .+. . ...++.+.... ..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 4568999999999999999887531 11 110 1 01112122111 135
Q ss_pred EEEEEEEcCCCCCchhchhh---hc--cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 61 ISFTVWDVGGQDKIRPLWRH---YF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
..+.++||+|.......... .+ ......++|++... +...+...+..+.. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 67899999997543322110 01 01235677777653 23343333333322 235679999999753
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.9e-05 Score=59.55 Aligned_cols=56 Identities=20% Similarity=0.405 Sum_probs=41.4
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcCceEEEEEEcCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (189)
.+.+++.|+|-|++||||+||+|.....- ...|+.......+.. +-.+.+.|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-dk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-DKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-cCCceeccCCce
Confidence 46799999999999999999999888764 344444333333433 337899999993
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=57.64 Aligned_cols=111 Identities=21% Similarity=0.249 Sum_probs=60.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC------Ccc-----cccC-----------CcCceEEEEE---------------
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG------EIV-----TTIP-----------TIGFNVETVE--------------- 57 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~------~~~-----~~~~-----------t~~~~~~~~~--------------- 57 (189)
.+...|+++|.+|+||||++..|... ... ...+ ..+..+....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 34678999999999999998877421 100 0111 0111111100
Q ss_pred EcCEEEEEEEcCCCCCchhch------hhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 58 YKNISFTVWDVGGQDKIRPLW------RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
.....+.++||||........ ......+|.+++|+|.+... ........+... -...-+|.||.|..
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCC
Confidence 023478999999976543221 11233689999999986532 222222222111 11235678999965
Q ss_pred C
Q 029675 132 N 132 (189)
Q Consensus 132 ~ 132 (189)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 3
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00027 Score=54.83 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=60.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC------c--c---cccC-----------CcCceEEEEE--------------Ec
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE------I--V---TTIP-----------TIGFNVETVE--------------YK 59 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~------~--~---~~~~-----------t~~~~~~~~~--------------~~ 59 (189)
+.-.++++|+.|+||||++.++.... . . .+.+ ..++.+.... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45678999999999999998885311 0 0 0110 1122221110 02
Q ss_pred CEEEEEEEcCCCCCchhch----hhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPLW----RHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+..+.++||||........ ..+.. ..+.+++|.+... ....+...+..+ . .-.+--++.||.|-..
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f-~----~l~i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKL-A----EIPIDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhc-C----cCCCCEEEEEcccCCC
Confidence 4689999999985443321 22222 3567777777632 233333333332 1 1233477799999754
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0011 Score=43.88 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=27.3
Q ss_pred HHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCC
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~ 41 (189)
+..+...........+++.|++|+|||++++.+...-
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444456689999999999999999887554
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00027 Score=56.05 Aligned_cols=109 Identities=25% Similarity=0.256 Sum_probs=58.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhc----C--C-cc-----cccC-----------CcCceEEEE----------------
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL----G--E-IV-----TTIP-----------TIGFNVETV---------------- 56 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~----~--~-~~-----~~~~-----------t~~~~~~~~---------------- 56 (189)
...-|+++|++|+||||++..|.. . . .. .+.+ ..++.+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 357899999999999997666532 1 1 10 1111 112222111
Q ss_pred -EEcCEEEEEEEcCCCCCchhch----hhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 029675 57 -EYKNISFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 57 -~~~~~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
...++.+.++||||........ ..+ .-.++.+++|+|.... +........+.... ...-+|.||.|
T Consensus 179 a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD 251 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLD 251 (433)
T ss_pred HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCcc
Confidence 1124679999999965432211 111 1257888999998642 23333333332211 12356779999
Q ss_pred CC
Q 029675 130 LP 131 (189)
Q Consensus 130 ~~ 131 (189)
..
T Consensus 252 ~~ 253 (433)
T PRK10867 252 GD 253 (433)
T ss_pred Cc
Confidence 54
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.1e-05 Score=58.37 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=59.3
Q ss_pred HHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCce-EEEEEEcCEEEEEEEcCCCCCc--hhchhhh
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-VETVEYKNISFTVWDVGGQDKI--RPLWRHY 81 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~-~~~~~~~~~~~~i~D~~g~~~~--~~~~~~~ 81 (189)
|++|-.-...++.+-|.+||-|++||||+||+|...++-..-|..+.. +..+----..+=++|+||--.- .......
T Consensus 295 lRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~iv 374 (572)
T KOG2423|consen 295 LRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIV 374 (572)
T ss_pred HHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHH
Confidence 444444455778899999999999999999999988876554433321 1111111235778999994322 2223333
Q ss_pred ccCCCEEEEEEECCCcccH
Q 029675 82 FQNTQGLIFVVDSNDRDRV 100 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~ 100 (189)
-.+++-|=++.+++.+
T Consensus 375 ---LkGvVRVenv~~pe~y 390 (572)
T KOG2423|consen 375 ---LKGVVRVENVKNPEDY 390 (572)
T ss_pred ---hhceeeeeecCCHHHH
Confidence 3467778888877644
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=8.9e-05 Score=55.30 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=37.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc-----cc--ccCCcCceEEE-EEE-cCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-----VT--TIPTIGFNVET-VEY-KNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~-----~~--~~~t~~~~~~~-~~~-~~~~~~i~D~~g~ 71 (189)
...++++|+|-||+|||||+|.+..... .. ..|.....+.. +.+ ..-.+.+.||||-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 3569999999999999999998865332 12 22333222222 333 2335889999994
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00034 Score=54.95 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=60.5
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCC-------c--cc--c-c-----------CCcCceEEEE----------EEcCEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE-------I--VT--T-I-----------PTIGFNVETV----------EYKNISF 63 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~-------~--~~--~-~-----------~t~~~~~~~~----------~~~~~~~ 63 (189)
..-++++|++|+||||++.+|.... . .+ . . ...++..... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568999999999999998886421 0 00 0 0 0112211111 1135678
Q ss_pred EEEEcCCCCCchhc----hhhhcc-----CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 64 TVWDVGGQDKIRPL----WRHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 64 ~i~D~~g~~~~~~~----~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
.++||+|....... +..+++ ...-.++|+|++-. ...+.+....+ .. -.+-=++.||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f-~~----~~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAY-ES----LNYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHh-cC----CCCCEEEEEcccCCC
Confidence 99999997533221 222222 24578899998743 23333333333 21 233467899999753
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00014 Score=57.32 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=61.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-------cc--cC---------------CcCceEEEE-----------EEcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-------TT--IP---------------TIGFNVETV-----------EYKN 60 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-------~~--~~---------------t~~~~~~~~-----------~~~~ 60 (189)
..-.++++|+.|+||||++..|.+.... .. .. ..++..... ...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 3468999999999999999887642100 00 00 011111110 1134
Q ss_pred EEEEEEEcCCCCCchhc----hhhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 61 ISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
..+.++||+|....... ...+ ....+-.++|+|.+-. ...+.+....+.. -.+-=+++||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCC
Confidence 57899999997653222 1111 1235568899998732 2333333333321 223467899999764
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00031 Score=53.63 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=37.8
Q ss_pred EEEEEEEcCCCCCchhchhhhcc--------CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 61 ISFTVWDVGGQDKIRPLWRHYFQ--------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
....++.+.|-..-..+...+.. ..++++.|+|+.+-.............+... =++++||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 34678888887655544433321 2588999999864221111111122222221 288999999876
Q ss_pred C
Q 029675 133 A 133 (189)
Q Consensus 133 ~ 133 (189)
+
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 4
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00034 Score=55.37 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=36.9
Q ss_pred CEEEEEEEcCCCCCchhchhh------hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPLWRH------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
++.+.++||||.......... ..-.++.+++|+|.... +........+.... ...=++.||.|..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCc
Confidence 457899999996543222111 12258899999998643 23333333332211 1235668999954
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00032 Score=52.48 Aligned_cols=89 Identities=25% Similarity=0.216 Sum_probs=58.5
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
.+.|=.++|+.+.+|+-=....+.+.-.... .++..++++||.|+.+..+... ..........++..+.+|+++
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v~~~s~~~ 151 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPVLFVSAKN 151 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeEEEecCcC
Confidence 3477788888888776333333333333333 4666788899999987754443 111222334567889999999
Q ss_pred CCChHHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNNI 177 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~ 177 (189)
+.+++++.+.+...+
T Consensus 152 ~~~~~~l~~~l~~~~ 166 (301)
T COG1162 152 GDGLEELAELLAGKI 166 (301)
T ss_pred cccHHHHHHHhcCCe
Confidence 999999998876553
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0015 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCChHHHHHhHhc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~ 39 (189)
-.+=|.|+||..+||||||.||+.
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHH
Confidence 457799999999999999999965
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00068 Score=59.47 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=62.7
Q ss_pred EEEEcCCCCChHHHHHhHhcCCcc--cc-----cCCcCceEEEEEEcCEEEEEEEcCCCC--------Cchhchhhh---
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIV--TT-----IPTIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHY--- 81 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~--~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~--- 81 (189)
-+|||++|+||||++.. .+.+|+ .. ....+..... -+-.-+-.++||+|.. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 48999999999999864 233333 11 0111100001 1223467889999842 223334433
Q ss_pred ------ccCCCEEEEEEECCCccc--HHH-------HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 82 ------FQNTQGLIFVVDSNDRDR--VVE-------ARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 82 ------~~~~d~~i~v~d~~~~~s--~~~-------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
.+-.+++|+.+|+.+.-+ ... ++..+.++..... ...|+.+++||.|+...
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEeccccccc
Confidence 246899999999864221 111 1222333322222 57999999999998753
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00012 Score=58.61 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=19.9
Q ss_pred CceEEEEcCCCCChHHHHHhHhc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~ 39 (189)
.--++++|+.|+||||++.+|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999988864
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.2e-05 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
|
... |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00011 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.9
Q ss_pred CceEEEEcCCCCChHHHHHhHhc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~ 39 (189)
++-++|+|+.|+||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 45679999999999999998854
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00023 Score=59.82 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=60.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-------------cccC-----------CcCceEEEE-----------EEcCEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-------------TTIP-----------TIGFNVETV-----------EYKNIS 62 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-------------~~~~-----------t~~~~~~~~-----------~~~~~~ 62 (189)
--++++|+.|+||||.+.+|...... .+.. ..++.+... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 46899999999999999888642210 0000 011111110 113457
Q ss_pred EEEEEcCCCCCchhc----hhhh--ccCCCEEEEEEECCC-cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 63 FTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 63 ~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+.++||+|....... .... ....+-.++|+|.+. .+.+.++...+..... -.+-=+|+||.|-..
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~-----~~i~glIlTKLDEt~ 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG-----EDVDGCIITKLDEAT 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc-----CCCCEEEEeccCCCC
Confidence 899999995543222 1111 234677899999873 3344444333332211 012357799999764
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00031 Score=54.06 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=56.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC--------------Ccc-----c---ccCCcCceE-----------------EE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG--------------EIV-----T---TIPTIGFNV-----------------ET 55 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~--------------~~~-----~---~~~t~~~~~-----------------~~ 55 (189)
.+.--|+++|-.|+||||.+-+|... .|. . .-....+.+ ..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 45567899999999999998887531 110 0 000011111 11
Q ss_pred EEEcCEEEEEEEcCCCCC-----chhch-hhhccCCCEEEEEEECCCcccHHHHHHHHHHHh
Q 029675 56 VEYKNISFTVWDVGGQDK-----IRPLW-RHYFQNTQGLIFVVDSNDRDRVVEARDELHRML 111 (189)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~-----~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 111 (189)
+..++..+.|.||+|.-. |+.+. -.-.-+.|-+|+|+|.+-..+-......+.+..
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 233568899999999532 22221 112235999999999985544444444455443
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00042 Score=54.15 Aligned_cols=99 Identities=25% Similarity=0.265 Sum_probs=58.2
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcC------Cc-----ccccC-----------CcCceEEEE---------------
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLG------EI-----VTTIP-----------TIGFNVETV--------------- 56 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~------~~-----~~~~~-----------t~~~~~~~~--------------- 56 (189)
...+..|+++|-.|+||||.+-+|... +. ..+.| .+++.++..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 345688999999999999998776431 10 01111 122222221
Q ss_pred --EEcCEEEEEEEcCCCCCchhchh------hhccCCCEEEEEEECCCcccHHHHHHHHHHHhc
Q 029675 57 --EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 112 (189)
Q Consensus 57 --~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 112 (189)
....+.+.|+||+|.-......- ...-++|-+++|+|+.-.+.--+....|.+.+.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~ 240 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG 240 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC
Confidence 11346899999999654433211 122369999999999755434444445555443
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00039 Score=51.76 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=62.5
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC----c----ccc--------------cCCcCceEEEEE--------------Ec
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE----I----VTT--------------IPTIGFNVETVE--------------YK 59 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~----~----~~~--------------~~t~~~~~~~~~--------------~~ 59 (189)
+.-+++++|++|+||||++..+...- . ... ....++.+.... ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 33699999999999999988774321 0 000 001122211110 12
Q ss_pred CEEEEEEEcCCCCCchhc----hhhhc--cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
+..+.++||||....... +..++ ...+-+++|+|++-. .+.+......+.. -.+-=++.||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 468899999997643222 22222 246778999998632 2333333333322 2334788999997643
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0001 Score=50.98 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
+|+|+|++|+|||||...+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00035 Score=53.87 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=44.6
Q ss_pred EEEEEEEcCCCCCchhchhhhc-------cCCCEEEEEEECCCccc--H--------------------HHHHHHHHHHh
Q 029675 61 ISFTVWDVGGQDKIRPLWRHYF-------QNTQGLIFVVDSNDRDR--V--------------------VEARDELHRML 111 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~--------------------~~~~~~~~~~~ 111 (189)
....++.+.|-.....+...+. -..|+++.|+|+.+-.. + ..+...+...+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4567889999766554443331 14788999999863210 0 01112223333
Q ss_pred cCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 029675 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (189)
Q Consensus 112 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 143 (189)
... =++++||+|+.+....+.+...+
T Consensus 173 ~~A------D~IvlnK~Dl~~~~~l~~~~~~l 198 (341)
T TIGR02475 173 ACA------DLVILNKADLLDAAGLARVRAEI 198 (341)
T ss_pred HhC------CEEEEeccccCCHHHHHHHHHHH
Confidence 321 28999999998875555555444
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00093 Score=53.06 Aligned_cols=67 Identities=9% Similarity=0.137 Sum_probs=38.2
Q ss_pred CEEEEEEEcCCCCCchh----chhhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRP----LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~----~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+..+.++||+|...... ....++. ...-+++|++.+-. ...+.+.+..+-.. . +--++.||.|-..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEecccccc
Confidence 46799999999765431 1222323 34577888888532 23333333333211 1 2368899999754
Q ss_pred C
Q 029675 133 A 133 (189)
Q Consensus 133 ~ 133 (189)
.
T Consensus 372 ~ 372 (424)
T PRK05703 372 S 372 (424)
T ss_pred c
Confidence 3
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00011 Score=49.11 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHhHh
Q 029675 20 ILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~ 38 (189)
|+++|+||+|||||+..+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999987
|
... |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00086 Score=42.70 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=54.3
Q ss_pred EEEc-CCCCChHHHHHhHhcCCcccccCCcCceEEEEEE---cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCC
Q 029675 21 LMVG-LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (189)
Q Consensus 21 ~viG-~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (189)
+++| ..|+||||+...|...--... +....-++. .+..+.++|+|+..... ....+..+|.++++.+.+.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDL 76 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCCh
Confidence 4444 488999998766532111000 000000100 11179999999875443 3346678999999998763
Q ss_pred cccHHHHHHHHHHHhcCCCCC-CCeEEEEEeC
Q 029675 97 RDRVVEARDELHRMLNEDELR-DAVLLVFANK 127 (189)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~-~~p~ivv~nK 127 (189)
.+.......+..+... ... ...+.+++|+
T Consensus 77 -~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 77 -PSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred -HHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 3455555444433332 212 4456777775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00014 Score=52.15 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=37.8
Q ss_pred CEEEEEEEcCCCCCchhc------hhhhccCCCEEEEEEECC------CcccHHHHH-HHHHHHhcCCCCCCCeEEEEEe
Q 029675 60 NISFTVWDVGGQDKIRPL------WRHYFQNTQGLIFVVDSN------DRDRVVEAR-DELHRMLNEDELRDAVLLVFAN 126 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~------~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~n 126 (189)
.....++|+|||-++-.. .-..+++-+.-+.++++. +|..|-... ..+..++. -..|-+=|+.
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvlS 171 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVLS 171 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhhh
Confidence 356889999998543221 222333455555555543 343333222 22222322 4677888899
Q ss_pred CCCCCC
Q 029675 127 KQDLPN 132 (189)
Q Consensus 127 K~D~~~ 132 (189)
|+|+-.
T Consensus 172 K~Dl~~ 177 (290)
T KOG1533|consen 172 KADLLK 177 (290)
T ss_pred HhHHHH
Confidence 999753
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00012 Score=51.19 Aligned_cols=23 Identities=48% Similarity=0.648 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~ 40 (189)
.+|+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999765
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00033 Score=48.53 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=34.2
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
..-+.|+|.+|+|||||+.+++..- ...+..+..+...+..+.+ |.+|.+.++
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l-----~~~g~~vg~Ik~~~~~~~~-d~~g~Ds~~ 58 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPAL-----CARGIRPGLIKHTHHDMDV-DKPGKDSYE 58 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHH-----hhcCCeEEEEEEcCCCccc-CCCCcHHHH
Confidence 3468999999999999999988542 1223334555554444444 777755444
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00013 Score=50.69 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
+|+|+|++|+|||||...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998864
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00011 Score=50.53 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
|
|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00014 Score=49.83 Aligned_cols=51 Identities=33% Similarity=0.520 Sum_probs=34.2
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
.+.++|.+|+|||||+.++... ....+.....++.....+.+ |.+|.+.++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~-----l~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA-----LSARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-----HHHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 5789999999999999999842 22334444556555544544 777755444
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.001 Score=42.03 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=47.7
Q ss_pred EEEEc-CCCCChHHHHHhHhcCCcccccCCcCceEEEEEE-cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 20 ILMVG-LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 20 i~viG-~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
|++.| ..|+||||+...+...--. .+....-++. ..+.+.++|+|+...... ...+..+|.++++.+.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGLLT--RNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccCC-H
Confidence 56777 4799999997665421110 1111111111 116799999998754433 36677899999999875 3
Q ss_pred ccHHHHHHHH
Q 029675 98 DRVVEARDEL 107 (189)
Q Consensus 98 ~s~~~~~~~~ 107 (189)
.++......+
T Consensus 74 ~s~~~~~~~~ 83 (104)
T cd02042 74 LDLDGLEKLL 83 (104)
T ss_pred HHHHHHHHHH
Confidence 3455554443
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00096 Score=44.65 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=58.4
Q ss_pred EEEcCCCCChHHHHHhHhc----CCc----ccccCC-cCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 21 LMVGLDAAGKTTILYKLKL----GEI----VTTIPT-IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 21 ~viG~~~~GKssli~~l~~----~~~----~~~~~t-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
..-|..|+|||++.-.+.. ... .+..+. ... .+.+.++|+|+... ......+..+|.++++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~--------~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv 73 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL--------DYDYIIIDTGAGIS--DNVLDFFLAADEVIVV 73 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC--------CCCEEEEECCCCCC--HHHHHHHHhCCeEEEE
Confidence 3456789999998655532 110 011110 111 16799999997543 3335678889999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
.+.+ ..++......+..+.... ...++.++.|+.+..
T Consensus 74 ~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 74 TTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred cCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 9986 334444444343333221 345678999998743
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0031 Score=49.45 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=62.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcC---------C-c--c---ccc-----------CCcCceEEEEE-----------Ec
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLG---------E-I--V---TTI-----------PTIGFNVETVE-----------YK 59 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~---------~-~--~---~~~-----------~t~~~~~~~~~-----------~~ 59 (189)
...|+++|+.|+||||.+.++... . + . ++. ...++.+.... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 468999999999999998877531 1 0 0 000 01122221111 14
Q ss_pred CEEEEEEEcCCCCCchhc----hhhhccC---CCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPL----WRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
++.+.++||+|......+ ...++.. .+-.++|+|++.. ...+...+..+.. -.+-=+++||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 578999999997643321 2222222 2368899998753 3344444444422 123467899999754
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00022 Score=41.62 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHhHhcC
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~ 40 (189)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00036 Score=48.30 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.1
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
+|.+.|++|+|||||+.+++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00026 Score=40.21 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.0
Q ss_pred eEEEEcCCCCChHHHHHhHh
Q 029675 19 RILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~ 38 (189)
..++.|+.|+|||||++.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999998774
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0002 Score=50.91 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~ 41 (189)
+.=.++++|++|+|||||++++.+-+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 44568999999999999999987544
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00031 Score=50.33 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.4
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhc
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
+..+...|++.|++|||||||++.+..
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999988865
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0093 Score=48.62 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=46.0
Q ss_pred CCEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCCCCC-Hh----HHHhhhCCccccCcceEE
Q 029675 85 TQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDA-VLLVFANKQDLPNAMN-AA----EITDKLGLHSLRQRHWYI 155 (189)
Q Consensus 85 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~~~ 155 (189)
..-+|+|=|.=+ .+. ......+.+++.. ... |+|+|++-+|...... .. .+...+........++..
T Consensus 132 ~~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~---~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~ 207 (519)
T PF03215_consen 132 NKKVILVEDLPNVFHRDT-SRFREALRQYLRS---SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITR 207 (519)
T ss_pred CceEEEeeccccccchhH-HHHHHHHHHHHHc---CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceE
Confidence 345666666521 222 4445555555554 344 9999999665432211 11 111222222223344556
Q ss_pred EEcccCCCCChHHHHHHHHHHH
Q 029675 156 QSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
+....-...-+...+..++.+-
T Consensus 208 I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 208 IKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred EEecCCCHHHHHHHHHHHHHHH
Confidence 6666666666666666666654
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00064 Score=49.07 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=26.5
Q ss_pred HHHHhhhccCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 7 ~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
+....+....-.+|++.|+||+|||+|..++...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555556679999999999999999888653
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0033 Score=47.23 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=66.2
Q ss_pred HHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCC------------
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD------------ 72 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~------------ 72 (189)
+..++......+--+++++|++|.|||+++.+|.........+. .....+....+|...
T Consensus 49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHHHHH
Confidence 45566666666778999999999999999999986543221111 112355566666421
Q ss_pred ------------CchhchhhhccCCCEEEEEEECC-C--cccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 029675 73 ------------KIRPLWRHYFQNTQGLIFVVDSN-D--RDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (189)
Q Consensus 73 ------------~~~~~~~~~~~~~d~~i~v~d~~-~--~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 127 (189)
.........++....=++++|=- + ..+.......+..+-.-.+.-.+|++.+|++
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 11222345667788888888842 2 1223333322222211122257999999875
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00038 Score=48.86 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhc
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~ 39 (189)
.+|+|+|.+|+||||+..+|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.013 Score=40.56 Aligned_cols=66 Identities=9% Similarity=-0.014 Sum_probs=43.1
Q ss_pred EEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
.+.++|+|+..... ....+..+|.+|++.+... .++......+..+.. . ......++.|+.|....
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~-~--~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEA-L--GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHH-c--CCceEEEEEeCCccccc
Confidence 69999999865443 3455678999999998863 345554443333322 1 23457789999986543
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.005 Score=44.49 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=40.0
Q ss_pred EEEEEEEcC-CCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 61 ISFTVWDVG-GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 61 ~~~~i~D~~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
..+.+.||. |-+.|. +...+.+|.+|.|.|++- .++..+ ..+.++..... =.++.+|.||.|..
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~ta-eri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTA-ERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHH-HHHHHHHHHhC--CceEEEEEeeccch
Confidence 456666665 333333 345578999999999873 333333 23444444421 27899999999965
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00048 Score=45.76 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~ 42 (189)
.=.++|+|+.|+|||||++.+.+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 45689999999999999998887653
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00044 Score=46.29 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
.+..-+|+|.|.||+|||||..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 36678999999999999999999863
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00054 Score=49.98 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.4
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
...++++|+|++|+|||+|+-.++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 56799999999999999998877643
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00045 Score=50.16 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
-+.++|++|||||||++-+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988763
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00058 Score=49.20 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCChHHHHHhHh
Q 029675 18 MRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~ 38 (189)
.+|+|+|+|||||||+...|.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00051 Score=44.88 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHhHhcC
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~ 40 (189)
|+|.|.+|+||||++..|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988654
|
... |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0005 Score=49.23 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=22.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
+.+..-|+++|++|+|||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 34557799999999999999998864
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00065 Score=44.66 Aligned_cols=27 Identities=33% Similarity=0.249 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV 43 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~ 43 (189)
.-.++++|++|+|||+++..+...-..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 357899999999999999998765543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00059 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~ 39 (189)
.+-|++.|.+|+|||||..+|..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46788999999999999999874
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0005 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhc
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~ 39 (189)
=-++++|++|||||||+|-+-+
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3579999999999999998764
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0011 Score=46.14 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=25.9
Q ss_pred HHhhhccCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 9 ~~~~~~~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
..+........|+|.|++|+|||||.+.|...
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34455677788999999999999999998753
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00056 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
.++++|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
|
|
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00064 Score=48.68 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=22.3
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
.+..-|+++|++|+|||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45677899999999999999999754
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00088 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCC
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~ 41 (189)
.-+++++|.+|+|||||+|.+.+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhc
Confidence 3589999999999999999998754
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00056 Score=45.70 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHhHhcC
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~ 40 (189)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00062 Score=45.63 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
.|+|+|+.|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
|
|
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00072 Score=46.26 Aligned_cols=51 Identities=31% Similarity=0.423 Sum_probs=36.1
Q ss_pred EEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchh
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (189)
+.++|..|+|||||+.+++. .....+..+..++..+.. --.|++|-+.++.
T Consensus 5 l~ivG~k~SGKTTLie~lv~-----~L~~~G~rVa~iKH~hh~-~~~D~~GkDs~r~ 55 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVR-----KLKARGYRVATVKHAHHD-FDLDKPGKDTYRH 55 (161)
T ss_pred EEEEecCCCChhhHHHHHHH-----HHHhCCcEEEEEEecCCC-CCCCCCCCccchh
Confidence 67999999999999999863 223444556666665555 3458888776654
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00053 Score=47.84 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
.++++|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999988653
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00061 Score=47.60 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
+|+++|.||+||||+...+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988864
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00079 Score=50.63 Aligned_cols=25 Identities=36% Similarity=0.303 Sum_probs=21.5
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHh
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~ 38 (189)
....+-|+|.|++|||||||++.+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999997664
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0026 Score=48.25 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=63.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC--------------Ccc----cccC----CcCceEEE--------------E--
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG--------------EIV----TTIP----TIGFNVET--------------V-- 56 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~--------------~~~----~~~~----t~~~~~~~--------------~-- 56 (189)
.+.+-|+++|-.|+||||-|-+|... .|. ++.. -.+..+.. +
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 45899999999999999998877431 110 0000 11111111 0
Q ss_pred -EEcCEEEEEEEcCCCCCchhch-------hhhcc-----CCCEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEE
Q 029675 57 -EYKNISFTVWDVGGQDKIRPLW-------RHYFQ-----NTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLL 122 (189)
Q Consensus 57 -~~~~~~~~i~D~~g~~~~~~~~-------~~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i 122 (189)
.-+++.+.++||+|........ ..... ..|-++++.|..-. +++.. ...+...... -=
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q-Ak~F~eav~l-------~G 288 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ-AKIFNEAVGL-------DG 288 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH-HHHHHHhcCC-------ce
Confidence 0146789999999965433321 11222 24458889898744 34433 3445555443 25
Q ss_pred EEEeCCCCC
Q 029675 123 VFANKQDLP 131 (189)
Q Consensus 123 vv~nK~D~~ 131 (189)
+++||.|..
T Consensus 289 iIlTKlDgt 297 (340)
T COG0552 289 IILTKLDGT 297 (340)
T ss_pred EEEEecccC
Confidence 778999954
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00045 Score=51.53 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=22.3
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
+..-.|++.|++|+||||+++.++.
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCccccchHHHHHhh
Confidence 3478999999999999999999874
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00062 Score=44.68 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHhHhcC
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~ 40 (189)
|++.|++|+|||+++..+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988754
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG4273 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0032 Score=45.86 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=63.4
Q ss_pred ceEEEEcCCCC--ChHHHHHhHhcCCcccccC---CcCceEEEEEEcC--EEEEEEEcCC-CCCchhchhhhccCCCEEE
Q 029675 18 MRILMVGLDAA--GKTTILYKLKLGEIVTTIP---TIGFNVETVEYKN--ISFTVWDVGG-QDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 18 ~~i~viG~~~~--GKssli~~l~~~~~~~~~~---t~~~~~~~~~~~~--~~~~i~D~~g-~~~~~~~~~~~~~~~d~~i 89 (189)
-.++|+|.+|+ ||-++.++|....|..... .+.+.-.+++.+- ..+.++-.+- ++.+.. ........-+++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lp-n~~~a~pl~a~v 83 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLP-NAEIAEPLQAFV 83 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccC-CcccccceeeEE
Confidence 45789999998 9999999998877653221 1122222332211 1222332222 122222 222334567899
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCC
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPN 132 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~ 132 (189)
+|||++....+..+..|+-.. .... -..+.++||.|..+
T Consensus 84 mvfdlse~s~l~alqdwl~ht----dinsfdillcignkvdrvp 123 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHT----DINSFDILLCIGNKVDRVP 123 (418)
T ss_pred EEEeccchhhhHHHHhhcccc----ccccchhheeccccccccc
Confidence 999999888777766665322 1111 23577899999764
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0036 Score=47.86 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=24.1
Q ss_pred HHhhhccCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 9 ~~~~~~~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
+..... ...+|+|.|++|+|||||++.|+..
T Consensus 137 L~~~v~-~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 137 IRSAID-SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred HHHHHH-cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 333343 3468999999999999999998754
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0006 Score=48.43 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHhHhcC
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~ 40 (189)
|+++|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988653
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00088 Score=50.83 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=26.2
Q ss_pred HHHHhhhccCCceEEEEcCCCCChHHHHHhHhc
Q 029675 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 7 ~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
.++........+-|+|.|++||||||+.+.|..
T Consensus 76 ~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 76 QFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444556789999999999999999988764
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0012 Score=47.99 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
.+.+-+++.|++|+|||||++.+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999988753
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00065 Score=47.63 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCChHHHHHhHh
Q 029675 18 MRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~ 38 (189)
-.|+++|++||||||++..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999887
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00068 Score=47.27 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=17.1
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhc
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
.....-.++|.|++|+|||+|++++..
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445567899999999999999998753
|
|
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00086 Score=47.05 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhc
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~ 39 (189)
.+|+++|+||+||||+..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988853
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0008 Score=46.63 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
+|+++|++|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987754
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00081 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~ 39 (189)
.=.++++|++|+|||||+|-+.+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHh
Confidence 34689999999999999998866
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00079 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
.|+++|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999864
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00085 Score=48.41 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999998876
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.001 Score=44.32 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
.|+++|++|+|||+|+..+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999987753
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00076 Score=48.80 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHhHhc
Q 029675 20 ILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~ 39 (189)
|++.|++|||||||++.|.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999998875
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00099 Score=46.87 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
+|+++|+||+||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0013 Score=46.28 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
..-.++++|++|+|||||++.+.+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999988754
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00098 Score=42.36 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.3
Q ss_pred CceEEEEcCCCCChHHHHHhHh
Q 029675 17 EMRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~ 38 (189)
.-.++++|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3568999999999999999875
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00084 Score=47.36 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
+|+++|+||+||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988653
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00095 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHhHhcC
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~ 40 (189)
|+++|++|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987653
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.001 Score=46.85 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCC
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~ 41 (189)
..-|+++|++|+|||||+++|+...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4558999999999999999997653
|
|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.002 Score=46.74 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.2
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhc
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
...+.+-|+|.|.+|+|||||.+.|..
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 355789999999999999999988853
|
|
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0012 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~ 39 (189)
...+|+++|+|||||||+...|..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998854
|
|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0011 Score=45.61 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHhHh
Q 029675 19 RILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~ 38 (189)
+|++.|.||+||||+..+|.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 78999999999999999887
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0013 Score=46.88 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
+.--|+++|++|+|||||++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4467899999999999999988764
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0013 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
+...+|+|+|++|+|||||++.+++.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcc
Confidence 46789999999999999999999854
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0011 Score=46.44 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHhHhc
Q 029675 20 ILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~ 39 (189)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998864
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 189 | ||||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 1e-104 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 1e-91 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 6e-91 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 5e-89 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 2e-86 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 5e-86 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 4e-85 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 1e-84 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 3e-84 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 8e-83 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 2e-82 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 3e-80 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 7e-80 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 6e-77 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 2e-74 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 2e-74 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 7e-74 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 2e-73 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 1e-70 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 2e-70 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 2e-70 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 2e-70 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 5e-68 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 1e-57 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 2e-55 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 2e-54 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 2e-50 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 3e-48 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 4e-48 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 5e-48 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 4e-47 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 2e-45 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 3e-45 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 3e-45 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-44 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-44 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 2e-43 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 2e-40 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 4e-39 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 5e-39 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 3e-38 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 3e-37 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 2e-35 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 5e-28 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-27 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 5e-27 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-26 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 2e-24 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 5e-24 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 3e-20 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 3e-20 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 3e-20 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 5e-20 | ||
| 1svk_A | 353 | Structure Of The K180p Mutant Of Gi Alpha Subunit B | 7e-09 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 1e-08 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 1e-08 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 2e-08 | ||
| 3onw_A | 328 | Structure Of A G-Alpha-I1 Mutant With Enhanced Affi | 8e-08 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 9e-08 | ||
| 2xns_A | 327 | Crystal Structure Of Human G Alpha I1 Bound To A De | 9e-08 | ||
| 3d7m_A | 354 | Crystal Structure Of The G Protein Fast-Exchange Do | 9e-08 | ||
| 1kjy_A | 325 | Crystal Structure Of Human G[alpha]i1 Bound To The | 9e-08 | ||
| 3ffb_A | 360 | Crystal Structure Of A Fast Activating G Protein Mu | 9e-08 | ||
| 2ik8_A | 324 | Crystal Structure Of The Heterodimeric Complex Of H | 9e-08 | ||
| 2g83_A | 313 | Structure Of Activated G-alpha-i1 Bound To A Nucleo | 9e-08 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 9e-08 | ||
| 3qe0_A | 325 | A Galpha-I1 P-Loop Mutation Prevents Transition To | 9e-08 | ||
| 2gtp_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 9e-08 | ||
| 3qi2_A | 328 | A Galpha P-Loop Mutation Prevents Transition To The | 9e-08 | ||
| 1gp2_A | 353 | G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi | 9e-08 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 1e-07 | ||
| 1y3a_A | 329 | Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe | 1e-07 | ||
| 2zjy_A | 356 | Structure Of The K349p Mutant Of Gi Alpha 1 Subunit | 1e-07 | ||
| 4g5q_A | 330 | Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | 1e-07 | ||
| 1bh2_A | 315 | A326s Mutant Of An Inhibitory Alpha Subunit Length | 1e-07 | ||
| 1as0_A | 353 | Gtp-Gamma-S Bound G42v Gia1 Length = 353 | 1e-07 | ||
| 1fqj_A | 325 | Crystal Structure Of The Heterotrimeric Complex Of | 1e-07 | ||
| 4g5o_A | 330 | Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length | 1e-07 | ||
| 2ihb_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 1e-07 | ||
| 4g5r_A | 330 | Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | 1e-07 | ||
| 2ode_A | 350 | Crystal Structure Of The Heterodimeric Complex Of H | 1e-07 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 2e-07 | ||
| 3v00_C | 356 | Studies Of A Constitutively Active G-Alpha Subunit | 2e-07 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 2e-07 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 3e-07 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 3e-07 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 3e-07 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 3e-07 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 3e-07 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 3e-07 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 3e-07 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 3e-07 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 3e-07 | ||
| 3ums_A | 354 | Crystal Structure Of The G202a Mutant Of Human G-Al | 4e-07 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 4e-07 | ||
| 1gg2_A | 353 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 4e-07 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 5e-07 | ||
| 3umr_A | 354 | Crystal Structure Of The G202d Mutant Of Human G-Al | 6e-07 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 8e-07 | ||
| 1gil_A | 353 | Structure Of Active Conformations Of Gia1 And The M | 8e-07 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 9e-07 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 1e-06 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 1e-06 | ||
| 3c7k_A | 333 | Molecular Architecture Of Galphao And The Structura | 2e-06 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 2e-06 | ||
| 1got_A | 350 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-06 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 2e-06 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 3e-06 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 3e-06 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 4e-06 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 4e-06 | ||
| 4dvg_A | 188 | Crystal Structure Of E. Histolytica Formin1 Bound T | 5e-06 | ||
| 3ref_B | 194 | Crystal Structure Of Ehrho1 Bound To Gdp And Magnes | 6e-06 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 8e-06 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 8e-06 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 9e-06 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 9e-06 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 1e-05 | ||
| 1tnd_A | 324 | The 2.2 Angstroms Crystal Structure Of Transducin-A | 2e-05 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 2e-05 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 2e-05 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 2e-05 | ||
| 3ah8_A | 355 | Structure Of Heterotrimeric G Protein Galpha-Q Beta | 3e-05 | ||
| 2bcj_Q | 353 | Crystal Structure Of G Protein-coupled Receptor Kin | 3e-05 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 3e-05 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 3e-05 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 3e-05 | ||
| 4ekc_A | 347 | Structure Of Human Regulator Of G Protein Signaling | 3e-05 | ||
| 3ohm_A | 327 | Crystal Structure Of Activated G Alpha Q Bound To I | 3e-05 | ||
| 4gnk_A | 353 | Crystal Structure Of Galphaq In Complex With Full-l | 3e-05 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 4e-05 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 4e-05 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 4e-05 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 4e-05 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 5e-05 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 5e-05 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 5e-05 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 6e-05 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 6e-05 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 6e-05 | ||
| 1zcb_A | 362 | Crystal Structure Of G Alpha 13 In Complex With Gdp | 6e-05 | ||
| 3cx7_A | 338 | Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co | 7e-05 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 7e-05 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 9e-05 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 1e-04 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 1e-04 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 1e-04 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 2e-04 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 2e-04 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 2e-04 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 2e-04 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 2e-04 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 2e-04 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 2e-04 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 2e-04 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 3e-04 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 3e-04 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 3e-04 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 4e-04 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 4e-04 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 5e-04 | ||
| 3sn6_A | 380 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 5e-04 | ||
| 2fh5_B | 214 | The Structure Of The Mammalian Srp Receptor Length | 5e-04 | ||
| 1cul_C | 380 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 5e-04 | ||
| 1cjk_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 5e-04 | ||
| 1azs_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 6e-04 | ||
| 1cs4_C | 394 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 6e-04 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 6e-04 | ||
| 3cx6_A | 338 | Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co | 6e-04 |
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327 | Back alignment and structure |
|
| >pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354 | Back alignment and structure |
|
| >pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325 | Back alignment and structure |
|
| >pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324 | Back alignment and structure |
|
| >pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325 | Back alignment and structure |
|
| >pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323 | Back alignment and structure |
|
| >pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328 | Back alignment and structure |
|
| >pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329 | Back alignment and structure |
|
| >pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356 | Back alignment and structure |
|
| >pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315 | Back alignment and structure |
|
| >pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353 | Back alignment and structure |
|
| >pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325 | Back alignment and structure |
|
| >pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323 | Back alignment and structure |
|
| >pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188 | Back alignment and structure |
|
| >pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355 | Back alignment and structure |
|
| >pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347 | Back alignment and structure |
|
| >pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327 | Back alignment and structure |
|
| >pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362 | Back alignment and structure |
|
| >pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380 | Back alignment and structure |
|
| >pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214 | Back alignment and structure |
|
| >pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380 | Back alignment and structure |
|
| >pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402 | Back alignment and structure |
|
| >pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402 | Back alignment and structure |
|
| >pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp Length = 338 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 357 bits (919), Expect = e-128
Identities = 95/183 (51%), Positives = 135/183 (73%), Gaps = 3/183 (1%)
Query: 1 MGLTFTKL---FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE 57
MG L L A +++R+LM+GLD AGKT+ILY+L LG++VTT+PT+G N+ET++
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62
Query: 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117
YKNISF VWD+GGQ +RP WR YF +T +I+VVDS DRDR+ A+ EL+ +L+EDELR
Sbjct: 63 YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122
Query: 118 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
++LL+FANKQDLP+A + AEI ++LG+ S+ R W I + + +G+GL EG+DWL +
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
Query: 178 ASK 180
+
Sbjct: 183 REQ 185
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 354 bits (911), Expect = e-127
Identities = 53/186 (28%), Positives = 103/186 (55%), Gaps = 6/186 (3%)
Query: 1 MGLTFT-----KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE 54
MG + +K+EM + +VGL +GKTT + + G+ IPT+GFN+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 60
Query: 55 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114
+ N++ +WD+GGQ + R +W Y + ++++VD+ D++++ +++ELH +L++
Sbjct: 61 KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 120
Query: 115 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174
+L+ +LV NK+DLP A++ E+ +K+ L +++ R S + + L WL
Sbjct: 121 QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180
Query: 175 NNIASK 180
+ S+
Sbjct: 181 QHSKSR 186
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 354 bits (910), Expect = e-127
Identities = 85/183 (46%), Positives = 127/183 (69%), Gaps = 1/183 (0%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG+ FT+++ RLF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
F +WD+GGQ+ +R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LL+FANKQD+ M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+ + + +
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179
Query: 181 VSS 183
+
Sbjct: 180 LEH 182
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 353 bits (908), Expect = e-127
Identities = 87/181 (48%), Positives = 122/181 (67%), Gaps = 1/181 (0%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL T L ++E+R+LM+GLD AGKTTIL K ++ T PT+GFN++T+E++
Sbjct: 3 MGL-LTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG 61
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
+WDVGGQ +R WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LL+FANKQDLP A++ I + L L S+R HW IQ A +GE L G+DWL ++I+S+
Sbjct: 122 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
Query: 181 V 181
V
Sbjct: 182 V 182
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 353 bits (907), Expect = e-126
Identities = 143/180 (79%), Positives = 158/180 (87%), Gaps = 4/180 (2%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
G LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 17 RG----SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 72
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAV
Sbjct: 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQD+PNAM +E+TDKLGL LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 351 bits (902), Expect = e-126
Identities = 102/181 (56%), Positives = 136/181 (75%), Gaps = 1/181 (0%)
Query: 1 MGLTFTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
MG F+ +F +L+ + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YK
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119
N+ VWD+GGQ IRP WR Y+ +T +IFVVDS D+DR+ A ELH ML E+EL+DA
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
LLVFANKQD P A++A+E++ +L L L+ R W I ++ A GEG+ EGLDWL + I
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180
Query: 180 K 180
+
Sbjct: 181 E 181
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 349 bits (898), Expect = e-125
Identities = 96/169 (56%), Positives = 125/169 (73%)
Query: 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 71
+EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
IRP WR Y+ NT +I+VVDS DRDR+ ++ EL ML E+ELR A+L+VFANKQD+
Sbjct: 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
AM ++E+ + LGL +L+ R W I T AT G GL E ++WL + S+
Sbjct: 122 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 345 bits (888), Expect = e-124
Identities = 83/176 (47%), Positives = 116/176 (65%), Gaps = 2/176 (1%)
Query: 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
KL S +E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ +
Sbjct: 6 LRKLKS--APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLN 63
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
VWD+GGQ KIRP WR YF+NT LI+V+DS DR R E EL +L E++L +L+F
Sbjct: 64 VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
ANKQDL A A+EI + L LH++R R W IQS A +GEG+ +G++W+ N+ +K
Sbjct: 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 345 bits (887), Expect = e-123
Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 9/185 (4%)
Query: 1 MGLTFTKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
G F + + L K ++L +GLD AGKTT+L+ LK + T PT E +
Sbjct: 7 FGW-FRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG 65
Query: 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119
NI FT +D+GG + R LW+ YF G++F+VD+ D +R EAR EL + N EL+D
Sbjct: 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV 125
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDW 172
++ NK D PNA++ AE+ LGL + QR + G E W
Sbjct: 126 PFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQW 185
Query: 173 LSNNI 177
LS I
Sbjct: 186 LSQYI 190
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 337 bits (867), Expect = e-120
Identities = 82/181 (45%), Positives = 119/181 (65%), Gaps = 4/181 (2%)
Query: 1 MGLTFTKLF--SRLF--AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV 56
MG + S L +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI 60
Query: 57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 116
N F +WD+GGQ+ +R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++L
Sbjct: 61 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 120
Query: 117 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
R A LL+FANKQD+ M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+ +
Sbjct: 121 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180
Query: 177 I 177
+
Sbjct: 181 L 181
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 336 bits (865), Expect = e-120
Identities = 149/163 (91%), Positives = 157/163 (96%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAA
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
EITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-119
Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 20/197 (10%)
Query: 1 MGLTFTKLFSRL--------FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN 52
M F ++S KK +++ +GLD AGKTT+L+ LK + +PT+
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 53 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 112
E + ++FT +D+GG + R +W++Y G++F+VD D +R++E+++EL ++
Sbjct: 61 SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 113 EDELRDAVLLVFANKQDLPNAMNAAEITDKLG------------LHSLRQRHWYIQSTCA 160
++ + + +L+ NK D P A++ + + G L L R +
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180
Query: 161 TSGEGLYEGLDWLSNNI 177
+G EG W++ I
Sbjct: 181 LKRQGYGEGFRWMAQYI 197
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 333 bits (855), Expect = e-118
Identities = 75/188 (39%), Positives = 118/188 (62%), Gaps = 8/188 (4%)
Query: 1 MGLTFTKLF--SRLFA--KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVE 54
MG + S L KE+ +L +GLD +GKTTI+ KLK +PTIGF++E
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE 60
Query: 55 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114
+ ++SFTV+D+ GQ + R LW HY++ Q +IFV+DS+DR R+V A++EL +LN
Sbjct: 61 KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120
Query: 115 EL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172
++ R +L FANK DL +A+ + +++ L L +++ + W+I ++ A GEGL EG+DW
Sbjct: 121 DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDW 180
Query: 173 LSNNIASK 180
L + I +
Sbjct: 181 LQDQIQTV 188
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 326 bits (838), Expect = e-114
Identities = 154/180 (85%), Positives = 162/180 (90%)
Query: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 149 AQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 208
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 268
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct: 269 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 250 bits (640), Expect = 1e-85
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---ISFTVWDVGGQ 71
+ +L VGL +GKT + +L G+ T +I + + N S T+ D+ G
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH 64
Query: 72 DKIRP-LWRHYFQNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDEL--RDAVLLVFANK 127
+ +R L + + + ++FVVDS R V + + L+++L + LL+ NK
Sbjct: 65 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124
Query: 128 QDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
QD+ A +A I +L R +S ++ + L
Sbjct: 125 QDIAMAKSAKLIQQQLEKELNTLRVT--RSAAPSTLDSSSTAPAQLGKK 171
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 231 bits (592), Expect = 2e-78
Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 26/197 (13%)
Query: 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLK-------LGEIVT----TIPTIGFN---- 52
+ + +I+ G +GKTT L + GE+V+ T+ F+
Sbjct: 5 TINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPL 64
Query: 53 -VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML 111
+ V+ F ++ V GQ + + G++FV DS +R+ + + M
Sbjct: 65 DIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMR 123
Query: 112 NE-----DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
L D +++ NK+DLP+A+ + + + + AT G+G+
Sbjct: 124 ENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG----KFPVLEAVATEGKGV 179
Query: 167 YEGLDWLSNNIASKVSS 183
+E L +S + ++V+
Sbjct: 180 FETLKEVSRLVLARVAG 196
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 1e-72
Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 11/170 (6%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+ I++ G +GKT++L L + T+ + + +Y T+ D G K+
Sbjct: 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKL 68
Query: 75 RPLWRHYFQN----TQGLIFVVDS-NDRDRVVEARDELHRMLNEDELRDAV---LLVFAN 126
R Y + +GLIF+VDS D ++ + L +L+ E +L+ N
Sbjct: 69 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128
Query: 127 KQDLPNAMNAAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174
K +L A ++I D L + + +R + + L
Sbjct: 129 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLD 178
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 9e-72
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
S + I++ G +GKT++L L + T+ + + +Y T+ D
Sbjct: 41 SGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFP 99
Query: 70 GQDKIRPLWRHYFQN----TQGLIFVVDS-NDRDRVVEARDELHRMLNEDELRDAV---L 121
G K+R Y + +GLIF+VDS D ++ + L +L+ E +
Sbjct: 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 159
Query: 122 LVFANKQDLPNAMNAAEITDKLG--LHSLRQR 151
L+ NK +L A ++I D L + + +R
Sbjct: 160 LIACNKSELFTARPPSKIKDALESEIQKVIER 191
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 3e-60
Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 5/127 (3%)
Query: 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNED- 114
+ + G + + P + + G I+V ++ R + + M +
Sbjct: 99 FSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF 158
Query: 115 -ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
+L++ Q M + +L L+ L W +Q T A + G G++W+
Sbjct: 159 GSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWI 217
Query: 174 SNNIASK 180
+ SK
Sbjct: 218 LEEVESK 224
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 171 bits (433), Expect = 4e-53
Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 5/118 (4%)
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNED--ELRDAVLL 122
G + + P + + G I+V ++ R + + M + +L+
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
+ Q M + +L L+ L W +Q T A + G G++W+ + SK
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 1e-49
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 20/164 (12%)
Query: 10 SRLFAKKEMRILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYK-NISFT 64
+ F + RIL++GL +GK++I +K+ E + T + + ++F
Sbjct: 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQ 72
Query: 65 VWDVGGQDKIRPLW---RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDA 119
+WD GQ F+ T LI+V+D+ D EA LH +++ D
Sbjct: 73 IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM--EALTRLHITVSKAYKVNPDM 130
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
VF +K D ++D + + R H A +G
Sbjct: 131 NFEVFIHKVDG--------LSDDHKIETQRDIHQRANDDLADAG 166
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 5e-37
Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 18/186 (9%)
Query: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDK 73
++L++G +GK+++ + TI + + N++ +WD GGQD
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64
Query: 74 -----IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFAN 126
H FQ Q LI V D + ++ + + L + DA + V +
Sbjct: 65 FMENYFTKQKDHIFQMVQVLIHVFDVESTEV-LKDIEIFAKALKQLRKYSPDAKIFVLLH 123
Query: 127 KQDLPNAMNAAEITDKLG--LHSLRQRHWYIQSTC-ATSG--EGLYEGLDWLSNNIASKV 181
K DL E+ + L + TS E LY+ + ++ +
Sbjct: 124 KMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPNM 183
Query: 182 SSLTSS 187
S+ S+
Sbjct: 184 SNHQSN 189
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 86.7 bits (214), Expect = 8e-21
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 12/120 (10%)
Query: 20 ILMVGLDAAGKTTIL----YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+L++G+ GK++I + ++ + + T ++E I V ++ GQ
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYF 60
Query: 76 PLW---RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDL 130
F++ L++V+DS D A L ++ + V +K D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYI--NAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 6e-11
Identities = 31/192 (16%), Positives = 72/192 (37%), Gaps = 30/192 (15%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGE---IVTTIPTIG--FNVETVEYKN-----ISFTVW 66
M++++VG +GKTT+L +L + + T+G ++ ++ + VW
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVF 124
D G+++ H+ + V D + V D + L + R + +++
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEV---DAMKPWLFNIKARASSSPVILV 118
Query: 125 ANKQDLPN--------AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
D+ + + E+ +K G ++R H+ + L + L
Sbjct: 119 GTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHF---VNATEESDALAK----LRKT 171
Query: 177 IASKVSSLTSSE 188
I ++ + +
Sbjct: 172 IINESLNFKIRD 183
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-09
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGG 70
++++++G A GK++I+ + + PTIG F + V + F +WD G
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q++ L Y++N Q + V D ++AR + L+E +D ++ + NK D
Sbjct: 62 QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDX 120
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165
++ + G ++ T A +GE
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 2e-09
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 42 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV 101
+ + T G + ++F ++DVGGQ R W F + +IFVV S+ + V+
Sbjct: 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257
Query: 102 EARDELHRM----------LNEDELRDAVLLVFANKQDL 130
++ +R+ N LR +++F NKQDL
Sbjct: 258 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-09
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVE--YKNISFTVWDVGGQDKI 74
+++VG GKTT + + GE + T+G + I F VWD GQ+K
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
L Y+ Q I + D R V +L R+ + +++ NK D+
Sbjct: 78 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIK 132
Query: 132 N 132
+
Sbjct: 133 D 133
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 4e-09
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
PT G + E KN+ F + DVGGQ R W F + ++F+V S++ D+V+
Sbjct: 184 ARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLME 243
Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL 130
+ +R+ +N + +++F NK DL
Sbjct: 244 DRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 4e-09
Identities = 41/215 (19%), Positives = 69/215 (32%), Gaps = 57/215 (26%)
Query: 5 FTKLF-SRLFAKKEMR-----------ILMVGLDAAGKTT-ILYKLKLGEIVTTIPTIGF 51
F K SRL ++R +L+ G+ +GKT L ++ + F
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD---F 182
Query: 52 NVETVEYKNISFTVW-DVGGQDK----IRPLWRHYFQNTQGLIFVVD--SNDRDRVVEAR 104
+ F W ++ + + L + +Q D SN + R+ +
Sbjct: 183 KI---------F--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 105 DELHRMLNEDELRDAVLLVFANKQDLPNAMNA-------------AEITDKLGLHSLRQR 151
EL R+L + LLV N Q+ A NA ++TD L +
Sbjct: 232 AELRRLLKSKPYENC-LLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLS--AATTT 287
Query: 152 HWYIQSTCATSGEGLY--EGLDWLSNNIASKVSSL 184
H + L E L + + L
Sbjct: 288 HISLDH----HSMTLTPDEVKSLLLKYLDCRPQDL 318
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 7e-09
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 42 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV 101
+ T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 174 LRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVL 233
Query: 102 EARDELHRML----------NEDELRDAVLLVFANKQDL 130
+E++RM N D +++F NK+DL
Sbjct: 234 AEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-08
Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 18/140 (12%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG---FNVETVEY--KNISFTVWDVGGQDK 73
I ++G GKTT + ++ G T+G V ++ I F VWD GQ+K
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
L Y+ G I D R + E ++ +A ++V ANK D+
Sbjct: 74 KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDI 129
Query: 131 PN-----AMNAAEITDKLGL 145
N E+
Sbjct: 130 KNRQKISKKLVMEVLKGKNY 149
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 2e-08
Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 25/182 (13%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGE-------------IVTTIPTIGFNVETVEYKNIS 62
+E+++ ++G AGKT++L +L + P I E K
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
F WD GGQ+ + + + + + ++DS + + + V++
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGK----SPVIV 155
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVS 182
V NK D + I K +G+G+ ++ ++ S V
Sbjct: 156 V-MNKIDENPSY---NIEQKKINERFPAIENRFHRISCKNGDGVES----IAKSLKSAVL 207
Query: 183 SL 184
Sbjct: 208 HP 209
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-08
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ 71
E ++++VG GK+ + +L V PTI + ++ + + D GQ
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 79
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + Y + +G + V N+ + R+++ R+ + D D +++ NK
Sbjct: 80 EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSD---DVPMVLVGNKC 136
Query: 129 DLPN 132
DLP
Sbjct: 137 DLPT 140
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 3e-08
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGGQ 71
+E +++++G GK+ + + G + PTI F + +E + + D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + Y +N QG I V ++ + RD++ R+ +++ V+LV NK
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKV--PVILV-GNKV 118
Query: 129 DLPN 132
DL +
Sbjct: 119 DLES 122
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-08
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
E ++++VG D GK+ + +L V PTI + ++ + + D
Sbjct: 1 GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
GQ++ + Y + +G + V N+ + + R+++ R+ + +++ ++LV N
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDV--PMVLV-GN 117
Query: 127 KQDLPN 132
K DLP+
Sbjct: 118 KCDLPS 123
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-08
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+ +++G GK+ +L + TIG F V K I +WD GQ+
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
R + R Y++ G + V D R + + ++ + + + V+++ NK D
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSD 137
Query: 130 LPN 132
L +
Sbjct: 138 LES 140
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 5e-08
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGG 70
+ ++++VG GK+ + + V+ PTI + I + D G
Sbjct: 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 66
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
Q++ + Y + G + V NDR + V + ++ R+ + D D +++ NK
Sbjct: 67 QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD---DFPVVLVGNK 123
Query: 128 QDLPN 132
DL +
Sbjct: 124 ADLES 128
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-08
Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++ +G + GKT+++ + T TIG F +T+ + + +WD G ++
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
R L Y +++ + V D + + + D++ D ++++ NK DL
Sbjct: 79 RSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLA 134
Query: 132 N 132
+
Sbjct: 135 D 135
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 7e-08
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+IL++G GK+ +L + + + I TIG F ++TV+ K + +WD GQ++
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G+I V D D + + ++ N+ +A LL+ NK D+
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDM 120
Query: 131 PN 132
Sbjct: 121 ET 122
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+IL++G + GKT+ L++ + T+G F V+T+ K I +WD G ++
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G I + D + + V + ++ + +A +L+ NK D+
Sbjct: 70 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDM 125
Query: 131 PN 132
+
Sbjct: 126 ED 127
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++L++G + GKT+ L++ + T+G F V+TV K I +WD GQ++
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G + + D ++ V + ++ + +A +++ NK DL
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD----NAQVILVGNKCDL 139
Query: 131 PN 132
+
Sbjct: 140 ED 141
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 1e-07
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 10/124 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGGQ 71
++++VG GK+ + + V PTI ++ E N V D GQ
Sbjct: 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ 76
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + Y + G + V D+ + V + R+ + + ++LV ANK
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMILV-ANKV 133
Query: 129 DLPN 132
DL +
Sbjct: 134 DLMH 137
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+++++G GKT +L + E + TIG F+ TV + +WD G +
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D EL+ V+++ NK D
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVGNKSD 141
Query: 130 LPN 132
L
Sbjct: 142 LSQ 144
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-07
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG F +++ K I +WD GQ+
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D + V EL + + V+++ NK D
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSD 121
Query: 130 LPN 132
L +
Sbjct: 122 LRH 124
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 1e-07
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 33/151 (21%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
+PT G + +++ F + DVGGQ R W H F+N ++F+V ++ D+V+
Sbjct: 150 VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209
Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL--------------------PNA 133
D +RM + +++ +++F NK+DL
Sbjct: 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRD 269
Query: 134 MNAAE--ITDK-LGLHSLRQRHWYIQSTCAT 161
AA I + L+ + Y TCAT
Sbjct: 270 AQAAREFILKMFVDLNPDSDKIIYSHFTCAT 300
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-07
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
+L++G + GKT+ L++ + T+G F V+TV K + +WD GQ++
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
R + Y++ G I + D + + V + ++ + +A +++ NK D+
Sbjct: 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKCDME 141
Query: 132 N 132
Sbjct: 142 E 142
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-07
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNISFT--VWDVG 69
+ R+++ G GK++++ + G T IPTI + + + T + D
Sbjct: 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTT 64
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
G + + R I V + + + + ++ E D +++ N
Sbjct: 65 GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE--DIPVMLVGN 122
Query: 127 KQDLP 131
K D
Sbjct: 123 KCDET 127
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
M+IL++G GK+ +L + + + I TIG F ++TV+ K + +WD GQ+
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G+I V D D + + ++ N+ +A LL+ NK D
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSD 136
Query: 130 LPN 132
+
Sbjct: 137 MET 139
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GKT +L++ T I TIG F + T+E K I +WD GQ+
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G++ V D + D + + + D ++ NK D
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCD 124
Query: 130 LPN 132
+ +
Sbjct: 125 VND 127
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G+I V D D+ + V + E+ R +E + L+ NK D
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCD 149
Query: 130 LPN 132
L
Sbjct: 150 LTT 152
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+ +++G GK+ +L++ + + TIG F +E + I +WD GQ+
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + R Y++ G + V D R + + + + N + V+++ NK D
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKAD 131
Query: 130 LPN 132
L
Sbjct: 132 LEA 134
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQ 71
++++VG GKT +L + K G T I T+G F + ++ + +WD GQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ R + Y+++ L+ + D ++ D + E+H D L++ NK
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKV 126
Query: 129 DLPN 132
D +
Sbjct: 127 DSAH 130
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-07
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G GKT+++ + + I T+G F + + K ++ +WD GQ++
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
L Y++++ G I V D D D + + EL +ML + L + NK DL
Sbjct: 69 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLE 124
Query: 132 N 132
Sbjct: 125 K 125
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+IL++G GK+++L + TIG F V+T+ +WD GQ++
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R L Y++ QG+I V D R ++ +EL + D V ++ NK D
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN---DIVNMLVGNKIDK 133
Query: 131 PN 132
N
Sbjct: 134 EN 135
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+I++ G A GK++ L +L E T+G F ++T+ + +WD GQ++
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + + YF+ G++ + D + E D + +E +++ NK D+
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADI 145
Query: 131 PNAMNAAE 138
+
Sbjct: 146 RDTAATEG 153
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+ L++G GK+ +L++ + + TIG F V K + +WD GQ+
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + R Y++ G + V D R + + + + + + V+++ NK+D
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKKD 141
Query: 130 LPN 132
L
Sbjct: 142 LDP 144
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 3e-07
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G+I V D D+ + V + E+ R +E + L+ NK D
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCD 132
Query: 130 LPN 132
L
Sbjct: 133 LTT 135
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-07
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GKT ++ + G TIG F ++TVE + + +WD GQ+
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + + Y+++ LI D + E E+ + + + ++ NK D
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKID 142
Query: 130 LPN 132
L
Sbjct: 143 LAE 145
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-07
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GK+ +L + E + + TIG F T+E K I +WD GQ+
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D + + EL ++ + + + NK D
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD----NVAVGLIGNKSD 129
Query: 130 LPN 132
L +
Sbjct: 130 LAH 132
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 3e-07
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVG 69
K +I ++G + GK+++ + G+ V + PTI F + + + + D
Sbjct: 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTA 62
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
GQD+ + Y + G I V + + +L M+ + ++ ++LV N
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI--PIMLV-GN 119
Query: 127 KQDLPN 132
K+DL
Sbjct: 120 KKDLHM 125
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G GK++++ + + TIG F + +E ++ +WD GQ++
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
R L +++ + + +D + + E + E ++ NK D+
Sbjct: 70 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129
Query: 132 N 132
Sbjct: 130 E 130
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-07
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG F +++ K I +WD G +
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D EL + + V+++ NK D
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSD 145
Query: 130 LPN 132
L +
Sbjct: 146 LRH 148
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-07
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GKT + Y+ G T TIG F V+ + I +WD GQ+
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 73 KIRP-LWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
+ R + +HY++N ++FV D + + +E + L + D ++ NK
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN---DIPRILVGNKC 137
Query: 129 DLPN 132
DL +
Sbjct: 138 DLRS 141
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-07
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++++++G GKT+++ + T+G F ++TVE K I +WD GQ+
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ + Y+++ +G+I V D + D + + + + +E DA LL+ NK D
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLD 142
Query: 130 LPN 132
Sbjct: 143 CET 145
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-07
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+ +L + I TIG F ++TVE K + +WD GQ+
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ + G+I V D D+ + V E+ R + L+ NK D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCD 124
Query: 130 LPN 132
L +
Sbjct: 125 LKD 127
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-07
Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++ +G + GKT+++ + T TIG F +T+ + + +WD GQ++
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
R L Y +++ + V D + + + D++ D ++++ NK DL
Sbjct: 77 RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTDLS 132
Query: 132 N 132
+
Sbjct: 133 D 133
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-07
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY---KNISFTVWDVGGQDK 73
++++G GKT+++++ + TIG F + V K + VWD GQ++
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ L +++ + V D + + + RDE N + ++ NK D
Sbjct: 71 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130
Query: 131 PNA 133
+
Sbjct: 131 EES 133
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FN-VETVEYKNISFTVWDVGGQ 71
E ++++VG GK+ + +L V PTI + ++ + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + Y + +G + V N+ + + + R+++ R+ + D++ ++LV NK
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV--PMVLV-GNKS 118
Query: 129 DLPN 132
DL
Sbjct: 119 DLAA 122
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 4e-07
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNI 61
+ + + F + ++ ++VG A GKT +L IPT+ N V+ K +
Sbjct: 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 78
Query: 62 SFTVWDVGGQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118
+ +WD GQ D++RPL + T + R + + +
Sbjct: 79 NLGLWDTAGQEDYDRLRPL---SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT 135
Query: 119 AVLLVFANKQDLPNAMNAAEITDKLGLH 146
++LV K DL + + E + L
Sbjct: 136 PIILV-GTKLDLRDDKDTIEKLKEKKLT 162
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-07
Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+ L++G GK+ +L++ + + TIG F + + K + +WD GQ+
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + R Y++ G + V D R + + + + ++ + V+++ NK+D
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKD 126
Query: 130 LPN 132
L
Sbjct: 127 LDA 129
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 5e-07
Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 9/124 (7%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGGQ 71
+ R+ + G GK++++ + G + IPT+ + + T + D G
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
+ + R I V R + + +++ + + E +++ NK
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE--SIPIMLVGNKC 119
Query: 129 DLPN 132
D
Sbjct: 120 DESP 123
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 5e-07
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G A GK++++ + G+ TIG F +TV + F +WD GQ++
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
L Y++ Q I V D + + A+ EL R + + V+ + NK DL
Sbjct: 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLA 124
Query: 132 N 132
N
Sbjct: 125 N 125
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 6e-07
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
+ ++G GK++I+ + PTIG F +TV + F +WD GQ++
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
L Y++ + + V D +D + EL E + V+ + NK DL
Sbjct: 86 HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAIAGNKCDLS 141
Query: 132 N 132
+
Sbjct: 142 D 142
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 6e-07
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGG 70
+E+++ ++G GK++I+++ PTIG F +TV+Y + F +WD G
Sbjct: 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
++ R L Y++ + I V D + + EL + V+ + NK
Sbjct: 65 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNK 120
Query: 128 QDLPN 132
DL +
Sbjct: 121 CDLTD 125
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 7e-07
Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVE-TVEYKNISFTVWDVGG 70
+ E+R+ ++G +GK++++++ G T + E V+ + + + G
Sbjct: 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV-FAN 126
+ + +IFV D V +L + E A+ LV +
Sbjct: 64 APDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 127 KQDLPN 132
+ +
Sbjct: 119 RISASS 124
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 7e-07
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G GKT+++ + + TIG F + V + ++ +WD GQ++
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ L +++ + V D + RDE + + + +V NK DL
Sbjct: 71 QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130
Query: 132 N 132
N
Sbjct: 131 N 131
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 8e-07
Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 9/124 (7%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
E+ + ++G AGK+ + K ++ P + ETV+++ + V D
Sbjct: 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA 77
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
D R R Y + V + R D + L E + LL+ N
Sbjct: 78 DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLL-GN 135
Query: 127 KQDL 130
K D+
Sbjct: 136 KLDM 139
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 8e-07
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+++L + + I TIG F + TVE + + +WD GQ+
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDL 130
+ R + Y++ T G+I V D E+ + R L+E D ++ NK D
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSA----ESFVNVKRWLHEINQNCDDVCRILVGNKNDD 125
Query: 131 PN 132
P
Sbjct: 126 PE 127
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 9e-07
Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNISFT--VWDVGG 70
+E +++++G GK+ + + G V PTI + + VE + D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAG 60
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
++ + Y +N QG V + + + + R+++ R+ + +++ ++LV NK
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDV--PMILV-GNK 117
Query: 128 QDLPN 132
DL +
Sbjct: 118 CDLED 122
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-06
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++++VG + GKT ++ + K G TIG F ++T+E K + +WD GQ+
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + + Y+++ G I D R V +++ + + V L+ NK D
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKSD 145
Query: 130 LPN 132
L
Sbjct: 146 LSE 148
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-06
Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ 71
E+++ + G GK+ ++ + + PT+ T++ + +S + D GQ
Sbjct: 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ 86
Query: 72 DKIRPLWR-HYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
+ + R + + +G + V D DR + V+ ++ L + + ++LV NK
Sbjct: 87 E--DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV--TLILV-GNK 141
Query: 128 QDLPN 132
DL +
Sbjct: 142 ADLDH 146
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-06
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGG 70
KK ++I++VG A GKT +L GEI T +PT+ N ++Y + +WD G
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 71 Q---DKIRPLWRHYFQNTQGLI--FVVDSND 96
Q D++RPL + ++ ++ F V++
Sbjct: 81 QEEYDRLRPL---SYADSDVVLLCFAVNNRT 108
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-06
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGG 70
+ +++++G GKT++ ++ GE PT+ ++ + V + D G
Sbjct: 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAG 81
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
QD+ L + G + V + +LH + + V+LV NK
Sbjct: 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV--PVVLV-GNK 138
Query: 128 QDL 130
DL
Sbjct: 139 ADL 141
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-06
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY---KNISFTVWDVGGQD 72
+I+++G A+GKT++ TIG F + + N++ +WD+GGQ
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ Y QG++ V D + + + + + ++ E E + V LV NK D
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV-GNKID 126
Query: 130 LPN 132
L +
Sbjct: 127 LEH 129
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-06
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNISFTVW 66
+++MVG GK+ + + E V PT Y + + +
Sbjct: 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 71
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV 123
D GQ+ + +YF++ +G + V + + R+++ R+ ++ + LLV
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLV 129
Query: 124 FANKQDLPN 132
NK DL +
Sbjct: 130 -GNKSDLED 137
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 21/129 (16%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
A + ++ + VG A GKT +L T +PT+ N V ++ +WD
Sbjct: 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTA 64
Query: 70 GQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-----VL 121
GQ +++RPL ++ I + + EL+ ++
Sbjct: 65 GQEDYNRLRPL---SYRGADVFILAFSLISKASYENVSKKWIP-----ELKHYAPGVPIV 116
Query: 122 LVFANKQDL 130
LV K DL
Sbjct: 117 LV-GTKLDL 124
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNISFTVW 66
+++MVG GK+ + + E V PT Y + + +
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 57
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV 123
D GQ+ + +YF++ +G + V + + R+++ R+ ++ + LLV
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLV 115
Query: 124 FANKQDLPN 132
NK DL +
Sbjct: 116 -GNKSDLED 123
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-06
Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 20/129 (15%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNISFTVW 66
+++MVG GK+ + + E V PT Y + + +
Sbjct: 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 67
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV 123
D GQ+ + +YF++ +G + V + + R+++ R+ ++ + L+
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE---NVPFLL 124
Query: 124 FANKQDLPN 132
NK DL +
Sbjct: 125 VGNKSDLED 133
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 3e-06
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G AGK++++ + + + TIG F +T+ + F +WD GQ++
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
L Y++ I V D ++ A+ EL N + V+ + NK DL
Sbjct: 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDLL 130
Query: 132 N 132
+
Sbjct: 131 D 131
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-06
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVG 69
K ++ + VG A GKT +L + T IPT+ N V + ++ +WD
Sbjct: 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTA 65
Query: 70 GQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
GQ ++RPL ++ + + + L ++LV
Sbjct: 66 GQEDYSRLRPL---SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLV-GT 121
Query: 127 KQDLPN 132
K DL +
Sbjct: 122 KLDLRD 127
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 4e-06
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--------KNISFTVWDVGG 70
++L++G GK+ + E G Y + S V+D+
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-----HTYDRSIVVDGEEASLMVYDIWE 58
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
QD R L H + V D+ ++ E R +L R D++ ++LV NK
Sbjct: 59 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDV--PIILV-GNK 115
Query: 128 QDL 130
DL
Sbjct: 116 SDL 118
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 5e-06
Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 12/123 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++++VG GK+T+ + + + ++ V+D+ Q
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 74 IRPLWR-HYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ H Q + V DR +V E L +L V+LV NK D
Sbjct: 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL--PVILV-GNKSD 120
Query: 130 LPN 132
L
Sbjct: 121 LAR 123
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 6e-06
Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
+++VG A GK++++ + G TIG F ++ +++ +WD GQ++
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ + Y++ Q + V + DR + + R+++ + D + NK DL
Sbjct: 68 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLL 122
Query: 132 N 132
+
Sbjct: 123 D 123
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-06
Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 14 AKKEMRI--LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWD 67
+ + ++ ++VG GKT +L+ +PT+ N ++ + I ++WD
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 68 VGGQ---DKIRPLWRHYFQNTQGLI--FVVDSND 96
G D +RPL + ++ ++ F + +
Sbjct: 62 TSGSPYYDNVRPL---SYPDSDAVLICFDISRPE 92
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-05
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 14/127 (11%)
Query: 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFT--VWDVG 69
F E+++ +VG ++GK+ ++++ G V P G + + S+ + D G
Sbjct: 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEG 75
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
G +++ + ++FV D V L N E+ ++LV
Sbjct: 76 GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEV--PMVLV-GT 127
Query: 127 KQDLPNA 133
+ + A
Sbjct: 128 QDAISAA 134
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-05
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 37 LKLGEIVTTIPTIGFNVETV-EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95
L T + I F+ + + ++DVGGQ R W H F+ +IF +
Sbjct: 158 LYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217
Query: 96 DRDRVVEARDELHRM----------LNEDELRDAVLLVFANKQDL 130
+ D+ + ++ +RM L + ++F NK D+
Sbjct: 218 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-05
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 10 SRLFAKKEMRI--LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISF 63
L+ + +R ++VG A GKT +L E +PT+ N V+ K +
Sbjct: 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVEL 75
Query: 64 TVWDVGGQ---DKIRPLWRHYFQNTQGLIFVVDSNDRD 98
+WD GQ D++RPL + +T ++ + D
Sbjct: 76 ALWDTAGQEDYDRLRPL---SYPDTDVILMCFSVDSPD 110
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ--- 71
+I++VG GKT +L+ +PT+ N ++ + I ++WD G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 72 DKIRPLWRHYFQNTQGLI--FVVDSND 96
D +RPL + ++ ++ F + +
Sbjct: 90 DNVRPL---SYPDSDAVLICFDISRPE 113
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ---D 72
+++VG GKT +L L T +PT+ N E + + ++WD G D
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89
Query: 73 KIRPLWRHYFQNTQGLI--FVVDSND 96
+RPL + ++ ++ F + +
Sbjct: 90 NVRPL---CYSDSDAVLLCFDISRPE 112
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-05
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 21/132 (15%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY------------KNISF 63
+ L +G GKT++LY+ G+ I T+G F + V Y + I
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAV 120
+WD G ++ R L +F++ G + + D + V +L + +
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE---NPD 129
Query: 121 LLVFANKQDLPN 132
+++ NK DL +
Sbjct: 130 IVLCGNKSDLED 141
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-05
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 21/141 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ-- 71
++ ++VG A GKT +L +PT+ + TV K ++D GQ
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 72 -DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-----AVLLVFA 125
D++RPL + T + + ++E EL++ LL+
Sbjct: 79 YDRLRPL---SYPMTDVFLICFSVVNPASFQNVKEEWVP-----ELKEYAPNVPFLLI-G 129
Query: 126 NKQDLPNAMNAAEITDKLGLH 146
+ DL + + +
Sbjct: 130 TQIDLRDDPKTLARLNDMKEK 150
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-05
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 29/149 (19%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
+ ++ ++VG A GKT+++ T IPT N V +V+ + + + D
Sbjct: 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTA 76
Query: 70 GQ---DKIRPLWRHYFQNTQGLI--FVVDSNDRDRVVEARDELHRMLN--EDELRDA--- 119
GQ DK+RPL + NT + F V S + E+R
Sbjct: 77 GQDEFDKLRPL---CYTNTDIFLLCFSVVS---------PSSFQNVSEKWVPEIRCHCPK 124
Query: 120 --VLLVFANKQDLPNAMNAAEITDKLGLH 146
++LV + DL + DK
Sbjct: 125 APIILV-GTQSDLREDVKVLIELDKCKEK 152
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-05
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ 71
+ +++++VG GKT++L G + PT+ + ++ K + +WD GQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 72 ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
D++RPL ++ + L+ D + + + +N + +++V K
Sbjct: 93 DDYDRLRPL---FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVV-GCKT 148
Query: 129 DL 130
DL
Sbjct: 149 DL 150
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-05
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ---D 72
+++VG A GKT +L + +PT+ N V+ K + +WD GQ D
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD 87
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
++RPL + +T ++ + D + ++ + ++LV NK+DL
Sbjct: 88 RLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLRQ 143
Query: 133 AMNAAEITDKLGLH 146
+ K+
Sbjct: 144 DEHTRRELAKMKQE 157
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-05
Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 21/145 (14%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVG 69
+ + ++ ++VG A GKT +L F V+ K ++ +WD
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 70 GQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-----VL 121
GQ D++RPL + T + R + + E+R ++
Sbjct: 62 GQEDYDRLRPL---SYPQTDVSLICFSLVSPASFENVRAKWYP-----EVRHHCPNTPII 113
Query: 122 LVFANKQDLPNAMNAAEITDKLGLH 146
LV K DL + + E + L
Sbjct: 114 LV-GTKLDLRDDKDTIEKLKEKKLT 137
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-05
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEYKN------------IS 62
+++L +G GKTT LY+ + I T+G F + V Y +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDA 119
+WD GQ++ R L +F++ G + + D + V +L + +
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE---NP 142
Query: 120 VLLVFANKQDLPN 132
+++ NK DLP+
Sbjct: 143 DIVLIGNKADLPD 155
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 19 RILMVGLDAAGKTTIL--YKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVW--DVG 69
++ +VG GK+ ++ + K + + T G V V +S ++ D
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
G D + Y+ I V D + + + L + E +LV AN
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV-AN 140
Query: 127 KQDLPN 132
K DLP
Sbjct: 141 KTDLPP 146
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 4e-04
Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGG- 70
+ +++ G GK+T+L L + + + P T G NV E + + D G
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224
Query: 71 -----QDKIRPLWRHYFQN----TQGLIFVVD-SNDRDRVVEARDELHRMLNEDELRDAV 120
++ + +I++ D S +E + L ++ E +D
Sbjct: 225 LDRPISERNEIE-KQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG-EFKDLP 282
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
LV NK D+ + N + ++++ A G G+
Sbjct: 283 FLVVINKIDVADEENIKRLEKF-----VKEKGLNPIKISALKGTGIDL 325
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 189 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-51 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 2e-46 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 2e-41 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 5e-39 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-38 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-38 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 5e-35 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 7e-34 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 4e-33 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 6e-31 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 1e-30 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-29 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 2e-26 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 9e-26 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 3e-25 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 5e-25 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 4e-24 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 9e-24 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 1e-22 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 1e-21 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 6e-21 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 3e-20 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 2e-19 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 5e-18 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 7e-18 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 1e-17 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 9e-17 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 2e-16 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 3e-15 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 6e-14 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 2e-13 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 2e-12 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 2e-12 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 4e-12 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 1e-11 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 1e-11 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 4e-11 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 2e-10 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 3e-10 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 4e-09 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 4e-09 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 8e-09 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 9e-09 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 1e-08 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 4e-08 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 9e-08 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 2e-07 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 3e-07 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 2e-06 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 2e-06 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 3e-06 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 7e-06 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 2e-05 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 2e-05 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 8e-05 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 1e-04 | |
| d1ls1a2 | 207 | c.37.1.10 (A:89-295) GTPase domain of the signal s | 3e-04 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 4e-04 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 0.001 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 0.002 | |
| d1okkd2 | 207 | c.37.1.10 (D:97-303) GTPase domain of the signal r | 0.003 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 0.004 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 161 bits (407), Expect = 2e-51
Identities = 122/171 (71%), Positives = 147/171 (85%)
Query: 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
K+ S++F KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VW
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
DVGGQDKIRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
KQDLP+AM EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 148 bits (374), Expect = 2e-46
Identities = 101/180 (56%), Positives = 134/180 (74%), Gaps = 1/180 (0%)
Query: 2 GLTFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
G F+ +F +L+ KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YKN
Sbjct: 1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
+ VWD+GGQ IRP WR Y+ +T +IFVVDS D+DR+ A ELH ML E+EL+DA
Sbjct: 61 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
LLVFANKQD P A++A+E++ +L L L+ R W I ++ A GEG+ EGLDWL + I +
Sbjct: 121 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 135 bits (341), Expect = 2e-41
Identities = 84/176 (47%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Query: 2 GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
G+ FT+++ RLF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N
Sbjct: 1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 59
Query: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121
F +WD+GGQ+ +R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A L
Sbjct: 60 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 119
Query: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
L+FANKQD+ M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+ + +
Sbjct: 120 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 129 bits (323), Expect = 5e-39
Identities = 149/160 (93%), Positives = 155/160 (96%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAA
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
EITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 128 bits (322), Expect = 1e-38
Identities = 81/165 (49%), Positives = 115/165 (69%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+E+R+LM+GLD AGKTTIL K ++ T PT+GFN++T+E++ +WDVGGQ +R
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A LL+FANKQDLP A++
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
I + L L S+R HW IQ A +GE L G+DWL ++I+S+
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 127 bits (319), Expect = 4e-38
Identities = 80/172 (46%), Positives = 115/172 (66%), Gaps = 2/172 (1%)
Query: 8 LFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV 65
+ +L + +E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ + V
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNV 64
Query: 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125
WD+GGQ KIRP WR YF+NT LI+V+DS DR R E EL +L E++L +L+FA
Sbjct: 65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124
Query: 126 NKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
NKQDL A A+EI + L LH++R R W IQS A +GEG+ +G++W+ N+
Sbjct: 125 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 119 bits (299), Expect = 5e-35
Identities = 49/185 (26%), Positives = 95/185 (51%), Gaps = 13/185 (7%)
Query: 6 TKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
+ + L KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT
Sbjct: 1 SSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 60
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
+D+GG + R +W++Y G++F+VD D +R++E+++EL ++ ++ + + +L+
Sbjct: 61 TFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 120
Query: 125 ANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDW 172
NK D P A++ + + GL+ L R + +G EG W
Sbjct: 121 GNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRW 180
Query: 173 LSNNI 177
++ I
Sbjct: 181 MAQYI 185
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 116 bits (290), Expect = 7e-34
Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
++L +GLD AGKTT+L+ LK + T PT E + NI FT +D+GG + R LW
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
+ YF G++F+VD+ D +R EAR EL + N EL+D ++ NK D PNA++ AE
Sbjct: 62 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121
Query: 139 ITDKLGLHSL-------RQRHWYIQSTCATSGEGLYEGLDWLS 174
+ LGL + QR + G E WLS
Sbjct: 122 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 116 bits (290), Expect = 4e-33
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+ R+L++G +GK+TI+ ++++ +V T G + ++F ++DVGGQ
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRILHVV---LTSGIFETKFQVDKVNFHMFDVGGQRDE 60
Query: 75 RPLWRHYFQNTQGLIFVV----------DSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
R W F + +IFVV + N +R+ EA + + N LR +++F
Sbjct: 61 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120
Query: 125 ANKQDLP 131
NKQDL
Sbjct: 121 LNKQDLL 127
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 109 bits (273), Expect = 6e-31
Identities = 38/195 (19%), Positives = 83/195 (42%), Gaps = 34/195 (17%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+E+++L++G +GK+T + ++++ + +PT G + +++ F + DVGGQ R
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVV----------EARDELHRMLNEDELRDAVLLVFA 125
W H F+N ++F+V ++ D+V+ E++ ++ +++ +++F
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 126 NKQDLPNAMNAAEITDK-----------------------LGLHSLRQRHWYIQSTCATS 162
NK+DL + L+ + Y TCAT
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179
Query: 163 GEGLYEGLDWLSNNI 177
E + + + I
Sbjct: 180 TENIRFVFAAVKDTI 194
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 107 bits (268), Expect = 1e-30
Identities = 49/163 (30%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ +WD+GGQ +
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R +W Y + ++++VD+ D++++ +++ELH +L++ +L+ +LV NK+DLP A+
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ E+ +K+ L +++ R S + + L WL +
Sbjct: 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 104 bits (259), Expect = 3e-29
Identities = 96/166 (57%), Positives = 125/166 (75%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG I
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 62
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
RP WR Y+ NT +I+VVDS DRDR+ ++ EL ML E+ELR A+L+VFANKQD+ AM
Sbjct: 63 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
++E+ + LGL +L+ R W I T AT G GL E ++WL + S+
Sbjct: 123 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.8 bits (240), Expect = 2e-26
Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 10/169 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
M+IL++G GK+ +L + + + I TIG + + + K + +WD GQ+
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G+I V D D + + +LLV NK D+
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV-GNKSDMET 121
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181
+ A+ G ++ + A + + + E L+ I K+
Sbjct: 122 RVVTADQ----GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 96.2 bits (238), Expect = 9e-26
Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 37/195 (18%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+E+++L++G +GK+TI+ ++K+ G +K++ F ++DVGGQ R
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEAR----------DELHRMLNEDELRDAVLLVFA 125
W H F+ +IF V +D D V+ + N D +++F
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 126 N-KQDLPNAMNAAEITDKLGLH----------------------SLRQRHWYIQSTCATS 162
N K + + +T + + Y TCAT
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATD 176
Query: 163 GEGLYEGLDWLSNNI 177
+ + D +++ I
Sbjct: 177 TKNVQFVFDAVTDVI 191
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.1 bits (233), Expect = 3e-25
Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GKT +L++ T I TIG F + T+E K I +WD GQ+
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G++ V D + R+ + + +++
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181
+ E G T A + + L+ +I +K+
Sbjct: 127 RQVSKER----GEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.2 bits (233), Expect = 5e-25
Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 36/183 (19%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+ ++IL++G +GK+T L ++++ PT G + E KN+ F + DVGGQ R
Sbjct: 1 RLVKILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVV----------EARDELHRMLNEDELRDAVLLVFA 125
W F + ++F+V S++ D+V+ E+ + ++N + +++F
Sbjct: 59 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 118
Query: 126 NKQ-DLPNAMNAAEITDKLG-----------------------LHSLRQRHWYIQSTCAT 161
NK L + I D +QR Y T A
Sbjct: 119 NKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAI 178
Query: 162 SGE 164
+ E
Sbjct: 179 NTE 181
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 92.0 bits (227), Expect = 4e-24
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 13/181 (7%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN----ISFTVWDVGGQDKIR 75
+L VGL +GKT + +L G+ T +I + + N + G +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAV--LLVFANKQDLPN 132
L + + + ++FVVDS R V + + L+++L + LL+ NKQD+
Sbjct: 63 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL------YEGLDWLSNNIASKVSSLTS 186
A +A I +L R + +G ++ + + KV L
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLEC 182
Query: 187 S 187
S
Sbjct: 183 S 183
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.3 bits (223), Expect = 9e-24
Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 9/166 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEYKNISFTVWDVGGQ 71
++IL++G GK+++L + + +V+ +WD GQ
Sbjct: 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R L Y++ QG+I V D RD V+ + L+ + D V ++ NK D
Sbjct: 67 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-- 124
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
E+ GL R+ A + +G+ + L I
Sbjct: 125 --KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.6 bits (216), Expect = 1e-22
Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 9/177 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
++L++G GK+ +L + I TIG + + ++ K + +WD GQ+
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ + G+I V D D++ + L + LLV
Sbjct: 67 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVSSLTSSES 189
+ ++ T A + + ++ I +S +E+
Sbjct: 127 RVVEYDVAK----EFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 179
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.6 bits (208), Expect = 1e-21
Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 9/171 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-----IGFNVETVEYKNISFTVWDVGGQD 72
+ L++G GK+ +L++ + G + V K + +WD GQ+
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + R Y++ G + V D R+ + L ++L K +
Sbjct: 66 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVSS 183
+ ++ T A +GE + E + I +K+ S
Sbjct: 126 REVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCARKILNKIES 172
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.0 bits (204), Expect = 6e-21
Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 18/179 (10%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--------------FNVETVEYKNIS 62
+++L +G GKTT LY+ + I T+G N + + +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
+WD GQ++ R L +F++ G + + D + + R+ + ++ + ++
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181
+ NK DLP+ E + T A +G+ + + ++ L + I ++
Sbjct: 126 LIGNKADLPDQREVNERQ---ARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 181
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.1 bits (199), Expect = 3e-20
Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 9/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-----VEYKNISFTVWDVGGQD 72
+IL++G + GKT+ L++ + K I +WD GQ+
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G I + D + + +D ++ VLLV
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
+ ++E + A + + + L + I K
Sbjct: 126 RVVSSERGR----QLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.1 bits (194), Expect = 2e-19
Identities = 28/166 (16%), Positives = 66/166 (39%), Gaps = 10/166 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET----VEYKNISFTVWDVGGQ 71
++++VG GKT +L + K G + T I T+G + V+ + +WD GQ
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R + Y+++ L+ + D ++ + L + + A++L+
Sbjct: 67 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS-- 124
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + G ++ T A +G + ++ +
Sbjct: 125 --AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.3 bits (184), Expect = 5e-18
Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 9/171 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG V+ K I +WD GQ+
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G + V D L + + + + V+++ NK DL +
Sbjct: 65 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH 123
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVSS 183
+ + + T A + E + I VS
Sbjct: 124 LRA---VPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 171
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.7 bits (182), Expect = 7e-18
Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 6/168 (3%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNI----SFTVWDVGGQD 72
++++++G A GK++I+ + + PTIG T F +WD GQ+
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ L Y++N Q + V D ++AR + + + +D ++ + NK D+
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQ 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
++ + G ++ T A +GE + + + I K
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.7 bits (182), Expect = 1e-17
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 9/133 (6%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
I++ G +GKT++L L + T+ + + +Y T+ D G K+R
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKL 63
Query: 79 RHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA---VLLVFANKQDL 130
Y + + V + D ++ + L +L+ E +L+ NK +L
Sbjct: 64 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 123
Query: 131 PNAMNAAEITDKL 143
A ++I D L
Sbjct: 124 FTARPPSKIKDAL 136
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.8 bits (175), Expect = 9e-17
Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 9/165 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-----IGFNVETVEYKNISFTVWDVGGQD 72
+ +++G GK+ +L++ + + P G + V + I +WD GQ+
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + R Y++ G + V D R + V+++ NK DL
Sbjct: 65 RFRAVTRSYYRGAAGALMVYDITRRST-YNHLSSWLTDARNLTNPNTVIILIGNKADLEA 123
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ +T + + A +GE + + + I
Sbjct: 124 QRD---VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (172), Expect = 2e-16
Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 9/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY--KNISFTVWDVGGQD 72
+I+++G GKT ++ + G + F ++TVE + + +WD GQ+
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + + Y+++ LI D + + L + + +LV
Sbjct: 66 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
+ + + Y T A + + + L+ + S+
Sbjct: 126 REV----SQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.6 bits (164), Expect = 3e-15
Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 9/170 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ +++G GK+ +L + +T G + ++ K I +WD GQ+
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
R + R Y++ G + V D R+ + + V+++ NK DL +
Sbjct: 64 SFRSITRSYYRGAAGALLVYDITRRET-FNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVS 182
+ + G R+ T A + + E + I K+
Sbjct: 123 RRDVKR---EEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQ 169
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.2 bits (155), Expect = 6e-14
Identities = 23/166 (13%), Positives = 57/166 (34%), Gaps = 7/166 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQ 71
+E +++++G GK+ + + G + + V+ + D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y +N QG I V ++ + + +++ +++ NK DL
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ ++ G + T A S + E + +
Sbjct: 122 SERE---VSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.1 bits (152), Expect = 2e-13
Identities = 22/166 (13%), Positives = 58/166 (34%), Gaps = 9/166 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-----VEYKNISFTVWDVGGQ 71
+ +++++G A GK++++ + G+ + ++ + F +WD GQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ L Y++ Q I V D + + A++ + + + + L
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-- 123
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
N + + T A + + E ++ +
Sbjct: 124 --ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.4 bits (145), Expect = 2e-12
Identities = 22/171 (12%), Positives = 57/171 (33%), Gaps = 15/171 (8%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
+++++G GK++++ + + T V+ ++ +WD GQ++
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67
Query: 74 IRPLWRHYFQNTQGLI---FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R L +++ + + V DS + + E + E ++ NK D+
Sbjct: 68 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQ--STCATSGEGLYEGLDWLSNNIAS 179
+ E + + T A + + + +
Sbjct: 128 SERQVSTEEAQA-----WCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.0 bits (144), Expect = 2e-12
Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 9/171 (5%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEYKNISFTVWDV 68
A +E+++ ++G GK++I+++ I + + + F +WD
Sbjct: 1 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
G ++ R L Y++ + I V D + ++ + + V +
Sbjct: 61 AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120
Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
H T A + + E +S I S
Sbjct: 121 LTDVREVMERDAKDYA----DSIHAIFVETSAKNAININELFIEISRRIPS 167
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.2 bits (142), Expect = 4e-12
Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 9/165 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQD 72
+++++G GKT+++ + + T + K ++ +WD GQ+
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ L Y++++ G I V D D D + ++ + + + +V
Sbjct: 64 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + T A +G+ E L +
Sbjct: 124 RHVSIQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 58.0 bits (139), Expect = 1e-11
Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKI 74
+++MVG GK+ + + E V + ++ + + + D GQ+
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
+ +YF++ +G + V + + D ++L E + L+ NK DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
+ K + Q + T A + + + L I ++
Sbjct: 126 QVSVEEAK---NRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.2 bits (139), Expect = 1e-11
Identities = 24/165 (14%), Positives = 58/165 (35%), Gaps = 5/165 (3%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNISFTVWDVGGQD 72
++++++G GKT+++ + + TIG V+ + ++ +WD GQ+
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + L +++ + V D + L + RD F + +
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
N T + + + T A + + ++ N
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.6 bits (135), Expect = 4e-11
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGG 70
+ +I+++G GKT + Y+ G T TIG + ++ + I +WD G
Sbjct: 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60
Query: 71 QDKIRPLWR-HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
Q++ R HY++N ++FV D + + D ++ NK D
Sbjct: 61 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120
Query: 130 LPNAMN 135
L +A+
Sbjct: 121 LRSAIQ 126
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.7 bits (130), Expect = 2e-10
Identities = 26/165 (15%), Positives = 61/165 (36%), Gaps = 10/165 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQD 72
+++++VG A GK++++ + G V +++ +WD GQ+
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + + Y++ Q + V + DR+ +++ E D + NK DL +
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDLLD 120
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
I ++ ++ T + E +L+
Sbjct: 121 DSC---IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.2 bits (129), Expect = 3e-10
Identities = 27/164 (16%), Positives = 66/164 (40%), Gaps = 9/164 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
+++ +G + GKT+++ + T +E + I +WD GQ++
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
R L Y +++ + V D + + + + + E ++LV NK DL +
Sbjct: 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTDLADK 120
Query: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+++ + G ++ + T A +G + + ++ +
Sbjct: 121 R---QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 4e-09
Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 12/164 (7%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYK----NISFTVWDVGGQDK 73
++++VG GKTT + + GE + T+G V + + I F VWD GQ+K
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
L Y+ Q ++ + RV + +++ NK D+ +
Sbjct: 65 FGGLRDGYYIQAQ--CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
A+ R+++ A S + WL+ +
Sbjct: 123 KVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.2 bits (121), Expect = 4e-09
Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 10/169 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG-----FNVETVEYKNISFTVWDVGGQ 71
++++++G GKT+++++ + TIG V K + VWD GQ
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE---LHRMLNEDELRDAVLLVFANKQ 128
++ + L +++ + V D + + N + ++ NK
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
D + L T A + + + ++ +
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSA 170
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 8e-09
Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 8/166 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG---FNVETVEYKNISFTVWDVGGQ 71
E ++++VG GK+ + +L V PTI ++ + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y + +G + V N+ + ++ + D +++ NK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + YI+ T A + +G+ + L I
Sbjct: 122 ARTVESRQAQD---LARSYGIPYIE-TSAKTRQGVEDAFYTLVREI 163
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 9e-09
Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 7/167 (4%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGG 70
+ ++++VG GK+ + + V+ + + +V+ + D G
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q++ + Y + G + V NDR E ++L + D +++ NK DL
Sbjct: 64 QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ ++ H A + E + L +
Sbjct: 124 ESQR---QVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 1e-08
Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 15/178 (8%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVG 69
+ + ++ ++VG A GKT +L + T+ V+ K ++ +WD
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
GQ+ L + T + R + + + + +++ K D
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLD 120
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQS----------TCATSGEGLYEGLDWLSNNI 177
L + + E + L + + A + GL D +
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (114), Expect = 4e-08
Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 6/166 (3%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE---TVEYKNISFTVWDVGGQ 71
+E +++++G GK+ + + G + PTI + V+ + + D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y +N QG V + + +D ++L + D +++ NK DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + + + A S + E L I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFL--ESSAKSKINVNEIFYDLVRQI 165
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 9e-08
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 17/173 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY---KNISFTVWDVGGQ 71
+ ++ ++VG A GKT +L + +PT+ N + + ++D GQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ L + T + +++ + L+ + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLR 120
Query: 132 NAMNAAEITDKLGLHSLRQ-----------RHWYIQSTCATSGEGLYEGLDWL 173
+ + E K + Y++ A + +GL D
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVE-CSALTQKGLKNVFDEA 172
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (110), Expect = 2e-07
Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 15/170 (8%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN---VETVEYKNISFTVWDVGGQDK 73
++++VG A GKT +L + +PT+ N V+ K + +WD G +
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
L + +T ++ + D + ++ + + +++ NK+DL N
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 121
Query: 134 MNAAEITDKLGLHSLRQRHWYIQS----------TCATSGEGLYEGLDWL 173
+ K+ ++ + A + +G+ E +
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 3e-07
Identities = 23/173 (13%), Positives = 60/173 (34%), Gaps = 8/173 (4%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ R+ + G GK++++ + G + T+ V + + + + D G
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML-NEDELRDAVLLVFANKQDLP 131
+ + R I V R + E + ++ + ++ +++ NK
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK--CD 119
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVSSL 184
+ + + + + + +++ T A + E L N + SL
Sbjct: 120 ESPSREVQSSEAEALARTWKCAFME-TSAKLNHNVKELFQELLNLEKRRTVSL 171
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.9 bits (102), Expect = 2e-06
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 6/165 (3%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQD 72
++++VG GK+ + + V TI ++ + V D GQ+
Sbjct: 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + Y + G + V D+ +L + +++ ANK DL
Sbjct: 64 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM- 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
D+ + + YI+++ + + L I
Sbjct: 123 -HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.9 bits (102), Expect = 2e-06
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
+I++VG GKT +L+ V T+ ++ + I ++WD G
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + ++ ++ D + + + + + E +LLV K DL
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV-GCKSDLRT 120
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 3e-06
Identities = 15/165 (9%), Positives = 36/165 (21%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
++L++G GK+ + E G + + V +
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
V + R + + + + + E
Sbjct: 63 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 122
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVSS 183
++ G T A + + + I + S
Sbjct: 123 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDS 167
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 7e-06
Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 7/166 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQ 71
K +I ++G + GK+++ + G+ V + I + TV + + D GQ
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
D+ + Y + G I V + ++L+ +++ NK+DL
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
++ + +++ + A + + +
Sbjct: 123 MERV--ISYEEGKALAESWNAAFLE-SSAKENQTAVDVFRRIILEA 165
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-05
Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 7/167 (4%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGG 70
+++ R+++VG GK+ + + VT + ++ + + D G
Sbjct: 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAG 62
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q++ + Y + +G + V DR E ++L + + +++ NK DL
Sbjct: 63 QEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL 122
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + RQ A + + L I
Sbjct: 123 DHQRQVTQEEGQ---QLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 40.8 bits (94), Expect = 2e-05
Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 22/176 (12%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQ 71
+ +VG AGK+++L + T P +G + FT+ D+ G
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV---EVSEEERFTLADIPGI 59
Query: 72 DKIRPLWRHYFQNT-------QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
+ + + L++V+D+ D + L LV
Sbjct: 60 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 119
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
NK DL + D L + + A +G GL + L + S
Sbjct: 120 LNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAGLPALKEALHALVRST 170
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 8e-05
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 15/174 (8%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
++ ++VG A GKT +L V T+ TV K ++D GQ+
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
L + T + + ++E L E + L+ + DL +
Sbjct: 70 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD 128
Query: 134 MNAAEITDKLGLH--------SLRQRHWYIQ--STCATSGEGLYEGLDWLSNNI 177
+ + L + A + +GL D I
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 1e-04
Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 8/153 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG----EIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
E+++ + G GK+ ++ + E T+ + + T++ + +S + D GQ+
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + +G + V D DR E + + + ++ L++ NK DL +
Sbjct: 62 DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165
+ ++ + G + A +GEG
Sbjct: 121 SRQ---VSTEEGEKLATELACAFYECSACTGEG 150
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Score = 37.8 bits (87), Expect = 3e-04
Identities = 30/143 (20%), Positives = 43/143 (30%), Gaps = 13/143 (9%)
Query: 20 ILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNVETVEY--------KNISFTVW 66
+VGL +GKTT KL G + E V
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 72
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
D + IR + + +VD+ R ++ E L E D VLLV
Sbjct: 73 DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 132
Query: 127 KQDLPNAMNAAEITDKLGLHSLR 149
A +K+G+ L
Sbjct: 133 MTGQEALSVARAFDEKVGVTGLV 155
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 36.9 bits (84), Expect = 4e-04
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 12/162 (7%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
+R+++VG GK+T+L +L + G + + + I F + D G
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF--ANKQDLP 131
+ L + ++ V++A L + R NK D+
Sbjct: 61 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
+N EI +KLG ++ A GEGL + + +
Sbjct: 121 EKINEEEIKNKLG------TDRHMVKISALKGEGLEKLEESI 156
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 35.8 bits (81), Expect = 0.001
Identities = 24/181 (13%), Positives = 51/181 (28%), Gaps = 25/181 (13%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR---- 75
I+ G GK+T++Y+L G+ V G + +E + + + D+ G +
Sbjct: 3 IIFAGRSNVGKSTLIYRL-TGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61
Query: 76 -------------PLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL----HRMLNEDELRD 118
+ L+ + + D
Sbjct: 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121
Query: 119 AVLLVFANKQDLPNAMNAA--EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
+V NK D + + +K + L + A G+ + + +
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSEIDKVFIPISAKFGDNIERLKNRIFEV 180
Query: 177 I 177
I
Sbjct: 181 I 181
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.3 bits (80), Expect = 0.002
Identities = 16/162 (9%), Positives = 50/162 (30%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
E+R+ ++G +GK++++++ G T + + + + +
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
+ + +F ++ + + V L + L + + + +
Sbjct: 64 DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSP 123
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + TCAT G + ++ +
Sbjct: 124 RVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Score = 34.7 bits (79), Expect = 0.003
Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 19/148 (12%)
Query: 20 ILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNV-------ETVEYKNISFTVWD 67
+L+VG++ GKTT + KL LG+ V F E + +I
Sbjct: 9 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGP 68
Query: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDS------NDRDRVVEARDELHRMLNED-ELRDAV 120
G +G + + + E + + D E V
Sbjct: 69 EGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEV 128
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSL 148
LV A + + +GL +
Sbjct: 129 WLVLDAVTGQNGLEQAKKFHEAVGLTGV 156
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 34.1 bits (77), Expect = 0.004
Identities = 24/175 (13%), Positives = 53/175 (30%), Gaps = 16/175 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETVEYKNISFTVWDVGGQ 71
+ +VG + GK+T+L + + T +P +G SF + D+ G
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMV---ETDDGRSFVMADLPGL 59
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ I + + + + + + P
Sbjct: 60 IEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119
Query: 132 NAMNAA---EITDKLGLHSLRQRHWY---IQSTCATSGEGLYEGLDWLSNNIASK 180
+ A L + +++ + A + EGL E L ++N + +
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 174
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 189 | |||
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.98 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.98 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.97 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.97 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.97 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.97 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.96 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.96 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.96 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.94 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.93 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.92 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.91 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.91 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.9 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.9 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.9 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.9 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.89 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.89 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.89 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.88 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.87 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.87 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.86 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.85 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.84 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.83 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.81 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.8 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.78 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.78 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.76 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.76 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.75 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.72 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.68 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.64 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.59 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.57 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.52 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.46 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.16 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.16 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.15 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.14 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.08 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.96 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.41 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.34 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.28 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.26 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.14 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.11 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.07 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.01 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.97 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.97 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.9 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.64 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.61 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.52 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.51 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.42 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.41 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.37 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.36 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.34 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.32 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.29 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.25 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.25 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.21 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.2 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.19 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.16 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.14 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.12 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.11 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.09 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.03 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.02 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.01 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 97.0 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.0 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.99 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.98 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 96.94 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 96.91 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 96.89 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 96.85 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.85 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.85 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.85 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.84 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.82 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.81 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.81 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 96.81 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.79 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.77 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 96.76 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.75 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.73 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 96.73 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.71 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.7 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.7 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.69 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.69 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 96.68 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 96.68 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.68 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.68 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 96.67 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.65 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.63 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.61 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 96.61 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.6 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 96.6 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.6 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.6 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.58 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.56 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.54 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.54 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.53 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.52 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 96.49 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.48 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.48 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.47 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.46 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.45 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.45 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.42 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.42 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.4 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.36 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.35 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.34 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.34 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.31 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.3 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.26 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.23 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.04 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.97 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.87 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.87 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.83 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.8 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.76 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.64 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.48 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.48 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.43 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.41 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.35 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.34 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.27 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.18 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.17 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.17 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.15 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.07 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.02 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.0 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.96 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 94.94 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.92 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.8 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.79 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.79 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.76 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.76 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.65 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.64 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.63 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.6 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.51 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.33 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.32 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.31 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.2 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.09 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.07 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.04 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.8 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 93.78 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 93.74 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 93.63 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.63 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 93.6 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.41 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.21 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.09 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.96 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.67 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.4 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 92.04 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.88 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.68 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 89.99 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 89.97 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.41 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 88.6 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 87.64 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 87.12 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 86.56 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 85.91 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 85.2 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 84.42 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 83.63 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 82.88 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.86 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.99 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.87 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 80.01 |
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=2.8e-38 Score=200.85 Aligned_cols=179 Identities=56% Similarity=0.992 Sum_probs=163.7
Q ss_pred CCHHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHH
Q ss_conf 30189999755-02577669999189987689987674198323568767137899983979999975899886010652
Q 029675 2 GLTFTKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (189)
|..|+.+++.+ ...+.+||+++|.+++|||||++++.++.+....||.+.........+..+.+||+||++.++..+..
T Consensus 1 ~~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (182)
T d1moza_ 1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC 80 (182)
T ss_dssp CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGG
T ss_pred CHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHHH
T ss_conf 92389999987078966899999999998899998873387776433065479999638899999955642001145776
Q ss_pred HCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 12587889999989995419999999999863888899849999858998798998689856199643686359997046
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
++..++++++|+|++++.++.....++...+......+.|+++++||+|+.+....+++...++...+...++.+++|||
T Consensus 81 ~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA 160 (182)
T d1moza_ 81 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 160 (182)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred HHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 51344068888641122110258999999877531477626999996256666678999999999987617988999779
Q ss_pred CCCCCHHHHHHHHHHHHHHC
Q ss_conf 78989699999999998512
Q 029675 161 TSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~ 180 (189)
++|+||+++|+++.+.+.++
T Consensus 161 ~~g~gv~e~~~~l~~~i~~~ 180 (182)
T d1moza_ 161 IKGEGITEGLDWLIDVIKEE 180 (182)
T ss_dssp GGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHC
T ss_conf 89979999999999999975
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=8.7e-37 Score=193.66 Aligned_cols=169 Identities=72% Similarity=1.258 Sum_probs=155.1
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEE
Q ss_conf 97550257766999918998768998767419832356876713789998397999997589988601065212587889
Q 029675 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 9 ~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (189)
++++...+.++|+++|++++|||||++++.++.+....+|.+............+.+||+||+..++..+..+++.++++
T Consensus 4 ~~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 83 (173)
T d1e0sa_ 4 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 83 (173)
T ss_dssp HHHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred HHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCEE
T ss_conf 54540797479999999998789999998448888743213256777503524447862798610146777651266248
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 99998999541999999999986388889984999985899879899868985619964368635999704678989699
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
++|+|+++.+++.....++............|+++++||+|+.+.....++...+++..+...++.+++|||++|+||++
T Consensus 84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e 163 (173)
T d1e0sa_ 84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 163 (173)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 99984154221789999999875301466651311210135610034899999999999876798899802888969999
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q 029675 169 GLDWLSNNI 177 (189)
Q Consensus 169 ~~~~i~~~~ 177 (189)
+|++|.+++
T Consensus 164 ~~~~l~~~~ 172 (173)
T d1e0sa_ 164 GLTWLTSNY 172 (173)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
T ss_conf 999999855
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=2.3e-36 Score=191.64 Aligned_cols=165 Identities=49% Similarity=0.905 Sum_probs=151.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECC
Q ss_conf 77669999189987689987674198323568767137899983979999975899886010652125878899999899
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
+.+||+++|++++|||||+++|.+..+.+..||.+.....+..++..+.+||+||++.++..+..++..++++++|+|.+
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 80 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 80 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 92799999999989999999980899873023575304301134543036633760554157776412100240222012
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 95419999999999863888899849999858998798998689856199643686359997046789896999999999
Q 029675 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (189)
+..++.....+|...+......+.|+++++||+|+.+.....+....+....+....+.+++|||++|+|++++|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 160 (165)
T d1ksha_ 81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160 (165)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 32227888876665432101579966999741452012678999999986564337988999978889798999999999
Q ss_pred HHHHC
Q ss_conf 98512
Q 029675 176 NIASK 180 (189)
Q Consensus 176 ~~~~~ 180 (189)
++..+
T Consensus 161 ~i~~r 165 (165)
T d1ksha_ 161 DISSR 165 (165)
T ss_dssp HHHTC
T ss_pred HHHCC
T ss_conf 98757
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=7.9e-37 Score=193.86 Aligned_cols=166 Identities=48% Similarity=0.846 Sum_probs=151.4
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 50257766999918998768998767419832356876713789998397999997589988601065212587889999
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 12 ~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
.++.+.+||+++|++++|||||++++.++.+....++.+.....+...++.+.+||++|++.++..+..++..+|++++|
T Consensus 11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 90 (176)
T d1fzqa_ 11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (176)
T ss_dssp SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 78998779999999998999999999648777520233105898504885676763254210014778876415526886
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 98999541999999999986388889984999985899879899868985619964368635999704678989699999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
||+++..++.....++..+.......++|+++++||+|+.+.....++.+.+.........+.+++|||++|+|++++|+
T Consensus 91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~ 170 (176)
T d1fzqa_ 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 170 (176)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf 20456542444445544334430369985999997405454242899999987877773698899986998989999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q 029675 172 WLSNNI 177 (189)
Q Consensus 172 ~i~~~~ 177 (189)
++++++
T Consensus 171 ~l~~~i 176 (176)
T d1fzqa_ 171 WVCKNV 176 (176)
T ss_dssp HHHHTC
T ss_pred HHHHCC
T ss_conf 999619
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=8.4e-36 Score=188.91 Aligned_cols=162 Identities=30% Similarity=0.679 Sum_probs=149.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEEC
Q ss_conf 7766999918998768998767419832-356876713789998397999997589988601065212587889999989
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
+.+||+++|++++|||||+++|.++.+. ...||.+..+..++.++..+.+||+||++.+...+..++..++++++|+|+
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 80 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA 80 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCC
T ss_conf 93799999999989899999997197887405641024424542268888840100012112222222233101101332
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 99541999999999986388889984999985899879899868985619964368635999704678989699999999
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 174 (189)
++++++.....++..+.......+.|+++++||.|+.+.....++.+.++...+....+.++++||++|+|++++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~ 160 (164)
T d1zd9a1 81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 12211100246666655442146985899985256301256788999999998885799899985857949999999999
Q ss_pred HHH
Q ss_conf 998
Q 029675 175 NNI 177 (189)
Q Consensus 175 ~~~ 177 (189)
+.+
T Consensus 161 ~~~ 163 (164)
T d1zd9a1 161 QHS 163 (164)
T ss_dssp HTC
T ss_pred HCC
T ss_conf 826
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-35 Score=187.94 Aligned_cols=166 Identities=17% Similarity=0.244 Sum_probs=131.8
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCCCEE-EEEEEC--CEEEEEEECCCCCCCHHCHHHHCCCCCE
Q ss_conf 5025776699991899876899876741983235-68767137-899983--9799999758998860106521258788
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (189)
Q Consensus 12 ~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (189)
+++.+.+||+++|++++|||||+++|+++.+... .+|..... ..+..+ .+.+.+||++|++.+...+..+++.+++
T Consensus 1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 80 (173)
T d2fn4a1 1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 80 (173)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHHCCCEE
T ss_conf 99887279999997996989999999739997100344111002575039833001012124553223452112012003
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 99999899954199999999998638888998499998589987989--9868985619964368635999704678989
Q 029675 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
+++|||+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++.... .+..++.|++|||++|.|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sak~g~g 155 (173)
T d2fn4a1 81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF-----GASHHVAYFEASAKLRLN 155 (173)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECBTTTTBS
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHCCCCCHHHHHHH-----HHHCCCEEEEEECCCCCC
T ss_conf 456401144566202231247999872567886599998406022113540245678-----876198899983899959
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 69999999999851236
Q 029675 166 LYEGLDWLSNNIASKVS 182 (189)
Q Consensus 166 i~~~~~~i~~~~~~~~~ 182 (189)
|+++|+.+++.+.++.+
T Consensus 156 v~e~f~~l~~~i~k~~~ 172 (173)
T d2fn4a1 156 VDEAFEQLVRAVRKYQE 172 (173)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999746
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-35 Score=188.20 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=129.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEE-EEEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEEC
Q ss_conf 6699991899876899876741983235687671378-9998--397999997589988601065212587889999989
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
+||+++|++++|||||++++.+..+....++.+..+. .+.. ..+.+.+||++|++.+..++..+++.+|++++|||+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 81 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV 81 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCCCCEEEEECCCCCCCCEECCCCHHHHHHHCEECCC
T ss_conf 69999898993999999998188567758815665300100123332103420111222000023101111101000134
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 9954199999999998638888998499998589987989--98689856199643686359997046789896999999
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
++++++..+..|+..+........+|+++++||+|+.+.. ...+... ..+..++.|++|||++|.||+++|..
T Consensus 82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~~~~v~~~f~~ 156 (168)
T d2gjsa1 82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-----CAVVFDCKFIETSAALHHNVQALFEG 156 (168)
T ss_dssp TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCHHHHCCHHHHHHHH-----HHHHCCCEEEEEECCCCCCHHHHHHH
T ss_conf 2222211212121100002455531379850365526651106999999-----99865988999727999499999999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999851236
Q 029675 173 LSNNIASKVS 182 (189)
Q Consensus 173 i~~~~~~~~~ 182 (189)
+++.+..+.+
T Consensus 157 l~~~i~~~~~ 166 (168)
T d2gjsa1 157 VVRQIRLRRD 166 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999988861
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.4e-34 Score=181.91 Aligned_cols=158 Identities=19% Similarity=0.376 Sum_probs=126.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEE--EEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 766999918998768998767419832-356876713789--998--397999997589988601065212587889999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
-+||+++|++|+|||||++++.++.+. ...++.+..... +.. ..+.+++||+||++.+..++..+++.+|++|+|
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv 84 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 84 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 98999999999198999999973988865145555310468998624369999998998554588999997438778999
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 9899954199999999998638888998499998589987989--98689856199643686359997046789896999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||+++++++.....|+....... ....|+++++||+|+.+.. ..++.... .+..++.+++|||++|.||+++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~g~gv~e~ 158 (169)
T d3raba_ 85 YDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQL-----ADHLGFEFFEASAKDNINVKQT 158 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHC-CSCCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECBTTTTBSHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHCCC-CCCCEEEEEEEECCCCCCCCCCHHHHHHH-----HHHCCCEEEEECCCCCCCHHHH
T ss_conf 97811043431234433210236-77524889973114222332110366779-----9875988999569999599999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999998512
Q 029675 170 LDWLSNNIASK 180 (189)
Q Consensus 170 ~~~i~~~~~~~ 180 (189)
|+++++.+.++
T Consensus 159 f~~l~~~i~ek 169 (169)
T d3raba_ 159 FERLVDVICEK 169 (169)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHC
T ss_conf 99999999619
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=100.00 E-value=1.8e-32 Score=172.87 Aligned_cols=176 Identities=48% Similarity=0.898 Sum_probs=157.6
Q ss_pred CCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHH
Q ss_conf 30189999755025776699991899876899876741983235687671378999839799999758998860106521
Q 029675 2 GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (189)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 81 (189)
|-.|+++. .....+.+||+++|.+|+|||||++++.++++....++.+.........+..+.+||+++.+..+..+..+
T Consensus 1 ~~~~~~~~-~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 79 (177)
T d1zj6a1 1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 79 (177)
T ss_dssp CHHHHHHH-HHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHH
T ss_pred CHHHHHHH-HHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCHHHH
T ss_conf 93189999-77289857999999999898999999966888730243333579984053699995155310122111133
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 25878899999899954199999999998638888998499998589987989986898561996436863599970467
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
+..++++++|+|.++..++.....++..........+.|+++++||+|+......+++.+.+.........+.++++||+
T Consensus 80 ~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 159 (177)
T d1zj6a1 80 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 159 (177)
T ss_dssp HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 21541566521445642145542001344320355533799999705631217699999999997667469889999698
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 89896999999999985
Q 029675 162 SGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 162 ~~~~i~~~~~~i~~~~~ 178 (189)
+|+|++++++++.+++.
T Consensus 160 tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 160 TGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp TTBTHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 89799999999999737
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=6.6e-35 Score=184.59 Aligned_cols=160 Identities=19% Similarity=0.302 Sum_probs=129.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEE-EEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 7766999918998768998767419832-356876713789-998--397999997589988601065212587889999
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
.-+||+++|++++|||||++++.++.+. .+.||.+..+.. +.. ..+.+.+||++|++.+..++..+++++|++++|
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
T ss_conf 52699999989958899999997299986547753431011113454332222334456531234543114233166898
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 9899954199999999998638888998499998589987989--98689856199643686359997046789896999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||.++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++.... .+..++.|++|||++|.||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~g~gv~e~ 157 (168)
T d1u8za_ 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR-----ADQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHH-----HHHCCCEEEEECCCCCCCHHHH
T ss_conf 52541134555899999999961889981899953642122335307889999-----9976976999868999299999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999998512
Q 029675 170 LDWLSNNIASK 180 (189)
Q Consensus 170 ~~~i~~~~~~~ 180 (189)
|.++++.+.+|
T Consensus 158 f~~l~~~i~~r 168 (168)
T d1u8za_ 158 FFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHCC
T ss_conf 99999999776
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-33 Score=178.51 Aligned_cols=167 Identities=16% Similarity=0.166 Sum_probs=128.4
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEE-EEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCE
Q ss_conf 502577669999189987689987674198323-56876713789-998--39799999758998860106521258788
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (189)
Q Consensus 12 ~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (189)
.|....+||+++|++++|||||+++|+++.|.. +.||++..... +.. ..+.+.+||++|++.+...+..+++.+|+
T Consensus 4 ~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~ 83 (185)
T d2atxa1 4 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 83 (185)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHCCCCCCE
T ss_conf 99871899999999998999999999649998767771343246898507955875204665420000112313442111
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHC---------CCCCCC-CCEEEEE
Q ss_conf 999998999541999999999986388889984999985899879899868985619---------964368-6359997
Q 029675 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQ-RHWYIQS 157 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~ 157 (189)
+++|||++++++|+....||........ .+.|+++++||+|+.+............ ...++. ..+.|+|
T Consensus 84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~-~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E 162 (185)
T d2atxa1 84 FLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 162 (185)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 2111246357888878899999999607-888706764244332211123443002355203999999999819977999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0467898969999999999851
Q 029675 158 TCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~ 179 (189)
|||++|.||+++|+.++++++.
T Consensus 163 ~SAk~~~gv~e~F~~li~~il~ 184 (185)
T d2atxa1 163 CSALTQKGLKTVFDEAIIAILT 184 (185)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred ECCCCCCCHHHHHHHHHHHHCC
T ss_conf 4589882989999999998759
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.2e-34 Score=179.89 Aligned_cols=158 Identities=22% Similarity=0.356 Sum_probs=131.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEEE----CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 766999918998768998767419832-356876713789998----397999997589988601065212587889999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++++|||||+++++++.+. .+.||++.++..... ..+.+.+||++|+..+..++..++++++++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHCCCCCCHHHC
T ss_conf 68999999999088999999984988854465300110001122223332221112346533000020011332110001
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 98999541999999999986388889984999985899879899868985619964368635999704678989699999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
||++++++++.+..|+..+.... .++|+++++||+|+.......+.. ......++.|++|||++|.||+++|.
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~-----~~~~~~~~~~~e~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFL 155 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSH-----HHHSSCSSEEEEEBTTTTBTTTHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHCC--CCCCEEEECCHHHHHHHHHHHHHH-----HHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf 13221101002677788876404--797235344655455513336888-----99987598799996898979999999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999985123
Q 029675 172 WLSNNIASKV 181 (189)
Q Consensus 172 ~i~~~~~~~~ 181 (189)
++++.+....
T Consensus 156 ~l~~~l~~~~ 165 (170)
T d1i2ma_ 156 WLARKLIGDP 165 (170)
T ss_dssp HHHHHHHTCT
T ss_pred HHHHHHCCCC
T ss_conf 9999972678
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-33 Score=178.85 Aligned_cols=162 Identities=17% Similarity=0.264 Sum_probs=125.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEE-EEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEE
Q ss_conf 7669999189987689987674198323-56876713789-998--3979999975899886010652125878899999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+.||+++|++++|||||++++.++.+.. +.||.+..... ... ....+.+||++|++.+...+..+++.+|++|+||
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCHHCCCCHHHCCCCHHHHHHC
T ss_conf 47999999899388999999971999887288224411221003542024502456764000003022103100443420
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCC---------CCCCC-CCEEEEECCCCC
Q ss_conf 89995419999999999863888899849999858998798998689856199---------64368-635999704678
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL---------HSLRQ-RHWYIQSTCATS 162 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~Sa~~ 162 (189)
|++++++|.....||........ .+.|+++++||+|+.+.....+....... ...+. ....|+||||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 21025788878887799999738-99756886632566421567899887510335599999999981996799935899
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 98969999999999851
Q 029675 163 GEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (189)
|.||+++|+.+++.+++
T Consensus 161 ~~gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 161 KDGVREVFEMATRAALQ 177 (177)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 96999999999999839
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.5e-34 Score=180.56 Aligned_cols=161 Identities=18% Similarity=0.256 Sum_probs=129.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEEE-E--ECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEE
Q ss_conf 577669999189987689987674198323-568767137899-9--839799999758998860106521258788999
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETV-E--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~-~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 90 (189)
++.+||+++|++++|||||++++..+.|.. +.||.+..+... . ...+.+.+||++|++.+...+..+++.+|++++
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 80 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 95659999998998999999999709898755875021110368862268874000246752234454311223553588
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 99899954199999999998638888998499998589987989--9868985619964368635999704678989699
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++++.+..|+..+.......+.|+++++||+|+.... ..++...... +..++.|++|||++|.||++
T Consensus 81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gv~e 156 (167)
T d1c1ya_ 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHH----HHCCCEEEEECCCCCCCHHH
T ss_conf 52104346667679999999885178897099999843755431465257899999----84897799973899919899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999851
Q 029675 169 GLDWLSNNIAS 179 (189)
Q Consensus 169 ~~~~i~~~~~~ 179 (189)
+|.++++++.+
T Consensus 157 ~F~~l~~~i~k 167 (167)
T d1c1ya_ 157 IFYDLVRQINR 167 (167)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHCC
T ss_conf 99999997049
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-34 Score=182.39 Aligned_cols=163 Identities=17% Similarity=0.234 Sum_probs=128.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEE-EE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 7766999918998768998767419832-3568767137899-98--397999997589988601065212587889999
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV-EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
+.+||+++|++++|||||+++|+++.+. .+.||.+..+... .. ..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 80 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 80 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 97189999989979899999997099987637613310112100022000001112356521110124343320389997
Q ss_pred EECCCCCCHHHHHHHHHHHHCC-CCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 9899954199999999998638-888998499998589987989--9868985619964368635999704678989699
Q 029675 92 VDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
||+++++++..+..|+..+... ......|+++|+||+|+.+.. ..++... ..+..++.|++|||++|.||++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~-----~~~~~~~~~~e~Sak~~~~v~e 155 (171)
T d2erxa1 81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-----LARTWKCAFMETSAKLNHNVKE 155 (171)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBSHHH
T ss_pred EECCCCCCHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHH-----HHHHCCCEEEEECCCCCCCHHH
T ss_conf 20222110010210234333340467898689996066532234554899999-----9998498699983899939999
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999998512366
Q 029675 169 GLDWLSNNIASKVSS 183 (189)
Q Consensus 169 ~~~~i~~~~~~~~~~ 183 (189)
+|..+++.+.++..+
T Consensus 156 ~f~~l~~~~~~~~~~ 170 (171)
T d2erxa1 156 LFQELLNLEKRRTVS 170 (171)
T ss_dssp HHHHHHHTCCSSCEE
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999986179
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-34 Score=181.41 Aligned_cols=159 Identities=16% Similarity=0.189 Sum_probs=129.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEE-EEEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEE
Q ss_conf 577669999189987689987674198323-5687671378-9998--39799999758998860106521258788999
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 90 (189)
.+.+||+++|++|+|||||+++|.++.+.. ..||.+..+. .+.. ..+.+.+||++|.+.+..++..++..+|++++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 86338999998992989999999719888544754211310388317679876301124642222343212232221100
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCC--CCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 9989995419999999999863888899849999858998798--99868985619964368635999704678989699
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||+++++++..+..|+..+.......+.|+++++||+|+... ...++.... .+..++.|++|||++|.||++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~-----a~~~~~~~~e~Sak~~~~v~~ 156 (167)
T d1xtqa1 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL-----AESWNAAFLESSAKENQTAVD 156 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECCTTCHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHH-----HHHCCCEEEEEECCCCCCHHH
T ss_conf 102210233455553101221000134544045053335332221158999999-----998398899983699979999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999985
Q 029675 169 GLDWLSNNIA 178 (189)
Q Consensus 169 ~~~~i~~~~~ 178 (189)
+|..++..+.
T Consensus 157 ~f~~li~~~~ 166 (167)
T d1xtqa1 157 VFRRIILEAE 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
T ss_conf 9999999836
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.9e-34 Score=179.13 Aligned_cols=159 Identities=19% Similarity=0.336 Sum_probs=126.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEE--EEEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 766999918998768998767419832-35687671378--9998--397999997589988601065212587889999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++++|||||++++.++.+. ...++.+..+. .+.. ..+.+.+|||||++.+..++..+++.++++++|
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v 84 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 84 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999999198999999972999876466554237899999999999999998998543588999997432668884
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 9899954199999999998638888998499998589987989--98689856199643686359997046789896999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|.+++.++.....|+..+..... ...|+++++||+|+.+.. ..++.... .+..++.+++|||++|.||+++
T Consensus 85 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ilvgnK~D~~~~~~v~~~~~~~~-----~~~~~~~~~~~SAktg~gV~e~ 158 (171)
T d2ew1a1 85 YDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAERREVSQQRAEEF-----SEAQDMYYLETSAKESDNVEKL 158 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCCEEECCTTTCTTHHHH
T ss_pred EECCCCHHHHHHHHHHHHHCCCCC-CCCCEEEEEEECCCCCCCCHHHHHHHHH-----HHHCCCEEEEECCCCCCCHHHH
T ss_conf 221432001124566554201334-6356899996214220000235677789-----9867978999746999898999
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999985123
Q 029675 170 LDWLSNNIASKV 181 (189)
Q Consensus 170 ~~~i~~~~~~~~ 181 (189)
|..++++++...
T Consensus 159 f~~l~~~l~~~~ 170 (171)
T d2ew1a1 159 FLDLACRLISEA 170 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999706
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.1e-34 Score=179.34 Aligned_cols=158 Identities=20% Similarity=0.331 Sum_probs=127.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEEEEE----CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEE
Q ss_conf 77669999189987689987674198323-56876713789998----39799999758998860106521258788999
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|++++|||||++++.++.+.. +.||.+........ ....+.+||++|++.+...+..+++++|++++
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEEEECCCCCCCEEEEECCCCCCEECCCCHHHCCCCCEEEE
T ss_conf 00799999999939899999998299886445420010000110137853125440268860451035000038966699
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 99899954199999999998638888998499998589987989--9868985619964368635999704678989699
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||+++++++..+..|+..+..... ...|+++++||+|+.... ..++... ..+..++.|++|||++|.||++
T Consensus 82 v~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~~ilvgnK~Dl~~~~~v~~~e~~~-----~a~~~~~~~~e~Sak~~~~v~e 155 (167)
T d1z08a1 82 VYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEKERHVSIQEAES-----YAESVGAKHYHTSAKQNKGIEE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHG-GGSEEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEEEBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCC-CCCCEEEECCCCCCCCCCCCCHHHHHH-----HHHHCCCEEEEEECCCCCCHHH
T ss_conf 9809955677755433220011112-332124523210201012322589999-----9998598399970699969899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999851
Q 029675 169 GLDWLSNNIAS 179 (189)
Q Consensus 169 ~~~~i~~~~~~ 179 (189)
+|..+++++++
T Consensus 156 ~F~~l~~~i~~ 166 (167)
T d1z08a1 156 LFLDLCKRMIE 166 (167)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
T ss_conf 99999999961
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=100.00 E-value=4.4e-32 Score=170.97 Aligned_cols=160 Identities=93% Similarity=1.424 Sum_probs=145.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECCCC
Q ss_conf 66999918998768998767419832356876713789998397999997589988601065212587889999989995
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
+||+++|++|+|||||+++|.++++....++............+.+.+||++|...+...+..++..++++++++|..++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~ 80 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEEEEEECCH
T ss_conf 98999999998989999999659888622111467999730169998862788400015666642053268999874273
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 41999999999986388889984999985899879899868985619964368635999704678989699999999998
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (189)
.++.....++............|+++++||.|+.+.....++........++..++.+++|||++|+||+++|+++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 77777777778887764045754999751024434442899999999998863798899967988979899999999519
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.6e-34 Score=180.53 Aligned_cols=156 Identities=18% Similarity=0.326 Sum_probs=126.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEEE----CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 766999918998768998767419832-356876713789998----397999997589988601065212587889999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++|+|||||+++|.++.+. .+.||.+........ ..+.+.+||++|++.+...+..+++.++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 49999999899598999999982988864354321221101011068403565421378632103245463068669999
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 9899954199999999998638888998499998589987989--98689856199643686359997046789896999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||++++++++.+..|+..+.... .+.|+++|+||+|+.+.. ..++... ..+..++.|++|||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~g~~v~e~ 154 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEG-----LAKRLKLRFYRTSVKEDLNVSEV 154 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHH-----HHHHHTCEEEECBTTTTBSSHHH
T ss_pred EECCCHHHHHHCCCCCCCCCCCC--CCCEEEEEECCCCCCCCEEEEEHHHHH-----HHHHCCCEEEEECCCCCCCHHHH
T ss_conf 94232244430223433222238--983277763257753444564026677-----99875987999606999699999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999851
Q 029675 170 LDWLSNNIAS 179 (189)
Q Consensus 170 ~~~i~~~~~~ 179 (189)
|+.+++++++
T Consensus 155 f~~l~~~~lq 164 (164)
T d1z2aa1 155 FKYLAEKHLQ 164 (164)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHC
T ss_conf 9999999719
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.8e-33 Score=174.58 Aligned_cols=167 Identities=15% Similarity=0.168 Sum_probs=128.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEE-EE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 7766999918998768998767419832-3568767137899-98--397999997589988601065212587889999
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV-EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
+.+||+++|++++|||||+++|+++.|. .+.||.+...... .. ....+.+||++|++.+...+..+++.+|++++|
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 81 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 81 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEECC
T ss_conf 75699999999969999999997199998758831021002575079424650244442032324454223201023114
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHH---------HCCCCCCC-CCEEEEECCCC
Q ss_conf 989995419999999999863888899849999858998798998689856---------19964368-63599970467
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK---------LGLHSLRQ-RHWYIQSTCAT 161 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~Sa~ 161 (189)
||++++++|+.+..||........ .+.|+++++||+|+.+.....+.... .+..++.. ....|+||||+
T Consensus 82 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 160 (191)
T d2ngra_ 82 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL 160 (191)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 114518899999999999875217-9973687740544443200466654301244339999999997299869998388
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 8989699999999998512366
Q 029675 162 SGEGLYEGLDWLSNNIASKVSS 183 (189)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~~ 183 (189)
+|.||+++|+.+++.+++..+.
T Consensus 161 ~~~~V~e~f~~l~~~~~~~~~~ 182 (191)
T d2ngra_ 161 TQKGLKNVFDEAILAALEPPEP 182 (191)
T ss_dssp TCTTHHHHHHHHHHHHTSCCST
T ss_pred CCCCHHHHHHHHHHHHHCCCCC
T ss_conf 8969999999999998618677
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-33 Score=178.47 Aligned_cols=160 Identities=17% Similarity=0.201 Sum_probs=128.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEE-EEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 7766999918998768998767419832-356876713789-998--397999997589988601065212587889999
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
..+||+++|++++|||||++++.++.+. ...||.+..+.. +.. ..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv 82 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV 82 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEE
T ss_conf 85799999989959899999997098885457631201011112355322012201246423221124453003389983
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCC-CHHH
Q ss_conf 9899954199999999998638888998499998589987989--986898561996436863599970467898-9699
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE-GLYE 168 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~ 168 (189)
||+++++++..+..|+..+.+.......|+++++||+|+.... ..++..+. ++..++.|++|||+++. ||++
T Consensus 83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~-----~~~~~~~~~e~Sak~~~~nV~~ 157 (169)
T d1x1ra1 83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM-----ATKYNIPYIETSAKDPPLNVDK 157 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHH-----HHHHTCCEEEEBCSSSCBSHHH
T ss_pred CCCCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHCEEEHHHHHHH-----HHHCCCEEEEECCCCCCCCHHH
T ss_conf 21010023432202467787631456763899843654666230003167789-----9975987999907988839999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999998512
Q 029675 169 GLDWLSNNIASK 180 (189)
Q Consensus 169 ~~~~i~~~~~~~ 180 (189)
+|..+++.+.++
T Consensus 158 ~F~~l~~~i~~~ 169 (169)
T d1x1ra1 158 TFHDLVRVIRQQ 169 (169)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999739
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-33 Score=177.25 Aligned_cols=158 Identities=20% Similarity=0.331 Sum_probs=126.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEEE----CCEEEEEEECCCCCCCHHCHHHHCCCCCEEE
Q ss_conf 57766999918998768998767419832-356876713789998----3979999975899886010652125878899
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (189)
.+.+||+++|.+++|||||+++|.++.+. .+.+|.+........ ....+.+||++|++.+...+..+++.+++++
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEE
T ss_conf 74538999998994999999999739888644653001211221112333210035304774124577799875305458
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCC--CCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHH
Q ss_conf 99989995419999999999863888899849999858998798--9986898561996436863599970467898969
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
+|||+.+++++..+..|+........ .+.|+++|+||+|+.+. ...++... +.+..++.|++|||++|.||+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~SAk~~~nV~ 155 (167)
T d1z0ja1 82 IVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDLTDVREVMERDAKD-----YADSIHAIFVETSAKNAININ 155 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECBTTTTBSHH
T ss_pred EEEEECHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCHHCCCCCHHHHHHHH-----HHHHCCCEEEEEECCCCCCHH
T ss_conf 98630102455567776555440368-862389962311010023204899999-----999849999999359997989
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999985
Q 029675 168 EGLDWLSNNIA 178 (189)
Q Consensus 168 ~~~~~i~~~~~ 178 (189)
++|..+++++.
T Consensus 156 e~f~~l~~~i~ 166 (167)
T d1z0ja1 156 ELFIEISRRIP 166 (167)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHCC
T ss_conf 99999997079
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-33 Score=177.02 Aligned_cols=155 Identities=18% Similarity=0.368 Sum_probs=126.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEEE----CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEE
Q ss_conf 66999918998768998767419832-356876713789998----3979999975899886010652125878899999
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
|||+++|++++|||||+++|.++++. .+.++.+........ ..+.+.+||++|++.+...+..++..++++++||
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHCCCEEEEEE
T ss_conf 98999998990989999999849998763662231000001105997235654256885110004388861664499960
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 899954199999999998638888998499998589987989--986898561996436863599970467898969999
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++.++..+..|+..+..... .+.|+++++||+|+.+.. ..++... ..+..++.|++|||++|.||+++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~SAk~g~~v~e~f 154 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQLF 154 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHHHHHH-----HHHHCCCEEEEECCCCCCCHHHHH
T ss_conf 65543132666766899998508-996499973103404544566889999-----999749879996289996999999
Q ss_pred HHHHHHHH
Q ss_conf 99999985
Q 029675 171 DWLSNNIA 178 (189)
Q Consensus 171 ~~i~~~~~ 178 (189)
.++++++.
T Consensus 155 ~~i~~~l~ 162 (164)
T d1yzqa1 155 RRVAAALP 162 (164)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHHC
T ss_conf 99999617
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-33 Score=177.77 Aligned_cols=161 Identities=22% Similarity=0.375 Sum_probs=129.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEEEE--E--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 7669999189987689987674198323-5687671378999--8--397999997589988601065212587889999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE--Y--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++++|||||++++.++.+.. ..+|.+....... . ....+.+||+||++.+..++..+++.++++++|
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 84 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 99999999999099999999970988865553310102567997167101588997898333146578886527799999
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--HHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 98999541999999999986388889984999985899879899--8689856199643686359997046789896999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|.++++++..+..|+..+..... .++|+++++||+|+..... ..... .+ .+..++.|++|||++|.|++++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~e~Sak~~~gi~e~ 158 (174)
T d2bmea1 85 YDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEAS-RF----AQENELMFLETSALTGENVEEA 158 (174)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHH-HH----HHHTTCEEEECCTTTCTTHHHH
T ss_pred EECCCCHHHHHHHHHHCCCCCCCC-CCEEEEEEEECCCCCCHHCHHHHHHH-HH----HHHCCCEEEEEECCCCCCHHHH
T ss_conf 955540567777653011112468-73189999703443210000145789-99----9857988999407989699999
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999998512366
Q 029675 170 LDWLSNNIASKVSS 183 (189)
Q Consensus 170 ~~~i~~~~~~~~~~ 183 (189)
|.++++.+.++.++
T Consensus 159 f~~l~~~i~~~~~~ 172 (174)
T d2bmea1 159 FVQCARKILNKIES 172 (174)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999988756
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-33 Score=177.39 Aligned_cols=162 Identities=19% Similarity=0.255 Sum_probs=129.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEE-EEEEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEE
Q ss_conf 577669999189987689987674198323-568767137-89998--39799999758998860106521258788999
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 90 (189)
++++||+++|++++|||||+++++++.+.. ..||.+... ..+.. ..+.+.+||++|...+...+..+++.+|++++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (171)
T d2erya1 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (171)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 76328999999997999999999739988545766452000001001212111221125653225454433424516899
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 99899954199999999998638888998499998589987989--9868985619964368635999704678989699
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||.++++++..+..|+..+.........|+++++||+|+.+.. ..++.... .+..++.|++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~~~~i~e 157 (171)
T d2erya1 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL-----ARQLKVTYMEASAKIRMNVDQ 157 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHH-----HHHTTCEEEECBTTTTBSHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCHHHHHHHH-----HHHCCCEEEEECCCCCCCHHH
T ss_conf 604543443146788768887630357887799983020665313227888999-----998298799973899939999
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999985123
Q 029675 169 GLDWLSNNIASKV 181 (189)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (189)
+|..+++.+.++.
T Consensus 158 ~f~~l~~~i~k~~ 170 (171)
T d2erya1 158 AFHELVRVIRKFQ 170 (171)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999863
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-34 Score=179.93 Aligned_cols=159 Identities=16% Similarity=0.252 Sum_probs=126.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEE-EEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEE
Q ss_conf 577669999189987689987674198323-56876713789-998--39799999758998860106521258788999
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 90 (189)
.+.+||+++|++++|||||+++++++.+.. ..+|.+..+.. +.. ....+.+||++|++.+...+..+++.++++++
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 80 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCEEE
T ss_conf 95659999998993999999999719998766886113553354047615762134577751234442777615351156
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 99899954199999999998638888998499998589987989--9868985619964368635999704678989699
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||+++++++.....|+..+.......+.|+++|+||+|+.... ..++.... .+..++.|++|||++|.||++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sak~g~~i~e 155 (167)
T d1kaoa_ 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL-----AEEWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTSCEEEECTTCHHHHHH
T ss_pred EEEECCHHHHHHHHCHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCHHHHHHHH-----HHHCCCEEEEECCCCCCCHHH
T ss_conf 642135666540000046665530489998899997225032023269999999-----997498599988899958999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999985
Q 029675 169 GLDWLSNNIA 178 (189)
Q Consensus 169 ~~~~i~~~~~ 178 (189)
+|..+++++.
T Consensus 156 ~f~~i~~~i~ 165 (167)
T d1kaoa_ 156 LFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
T ss_conf 9999999870
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.7e-33 Score=175.24 Aligned_cols=161 Identities=20% Similarity=0.355 Sum_probs=128.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEE--EEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEE
Q ss_conf 7766999918998768998767419832-356876713789--998--39799999758998860106521258788999
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|.+++|||||+++|.++.+. ...+|.+..... +.. ..+.+.+||+||++.+..++..++++++++|+
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~ 84 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 84 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 78899999999909899999996198888728854325789999996578999999899854357899998325878999
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--HHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 998999541999999999986388889984999985899879899--868985619964368635999704678989699
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||+++++++..+..++..+.... ....|+++++||+|+.+... .++..... ...++.|++|||++|.||++
T Consensus 85 v~d~t~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~gi~e 158 (194)
T d2bcgy1 85 VYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVED 158 (194)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHCC-CCCCEEEEEEECCCCCCCCCHHHHHHHHHH-----HCCCCCEEEEECCCCCCHHH
T ss_conf 996762344566766445566404-677539999721453102321588875433-----21476469986475766999
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999851236
Q 029675 169 GLDWLSNNIASKVS 182 (189)
Q Consensus 169 ~~~~i~~~~~~~~~ 182 (189)
+|+.+++.+.+...
T Consensus 159 ~f~~l~~~i~~~~~ 172 (194)
T d2bcgy1 159 AFLTMARQIKESMS 172 (194)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999998754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-34 Score=180.99 Aligned_cols=162 Identities=21% Similarity=0.426 Sum_probs=128.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEE--EEE------------CCEEEEEEECCCCCCCHHCHHHH
Q ss_conf 7669999189987689987674198323-56876713789--998------------39799999758998860106521
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY------------KNISFTVWDVGGQDKIRPLWRHY 81 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~------------~~~~~~i~D~~G~~~~~~~~~~~ 81 (189)
.+||+++|++++|||||+++|+++.+.. ..++.+..+.. +.. ...++.+||++|++.++.++..+
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~ 84 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 84 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 98999999999198999999961999986478654036678999901000013466635886255578645668899999
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 25878899999899954199999999998638888998499998589987989--9868985619964368635999704
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
++.++++|+|||++++.++..+..|+..+.........|+++++||+|+.+.. ..++.... .+..++.|++||
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~-----~~~~~~~~~e~S 159 (186)
T d2f7sa1 85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL-----ADKYGIPYFETS 159 (186)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCCEEEEB
T ss_pred HHCCCEEEEEEECCCCCCCEEEEECCCHHHHHCCCCCCEEEEEEEECCCHHHHCCHHHHHHHH-----HHHCCCEEEEEE
T ss_conf 726988999996323454114542112012213677842999963124102210048999999-----998498899995
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 678989699999999998512366
Q 029675 160 ATSGEGLYEGLDWLSNNIASKVSS 183 (189)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~~~ 183 (189)
|++|.||+++|+++++.+.++.+.
T Consensus 160 ak~~~~i~e~f~~l~~~i~~k~~~ 183 (186)
T d2f7sa1 160 AATGQNVEKAVETLLDLIMKRMEQ 183 (186)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 899979899999999999998875
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-33 Score=176.56 Aligned_cols=158 Identities=20% Similarity=0.355 Sum_probs=127.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEEE----CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEE
Q ss_conf 7766999918998768998767419832-356876713789998----39799999758998860106521258788999
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 90 (189)
-.+||+++|++++|||||+++|.++.+. ...+|.+........ ....+.+||++|++.+...+..+++.++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 58899999999949899999998598885434420220000000002147877741578731100547998608665899
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 99899954199999999998638888998499998589987989--9868985619964368635999704678989699
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|+|..+.+++.....|+..+..... .+.|+++++||+|+.+.. ..++... ..+..++.|++|||++|.||++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~v~~e~~~~-----~~~~~~~~~~e~SAk~g~~V~e 158 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQS-----YADDNSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCHHHHHH-----HHHHCCCEEEEEECCCCCCHHH
T ss_conf 7325046677878887643320368-984598632412432234561777777-----8986697899964899978999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999851
Q 029675 169 GLDWLSNNIAS 179 (189)
Q Consensus 169 ~~~~i~~~~~~ 179 (189)
+|..+++++.+
T Consensus 159 ~f~~l~~~i~~ 169 (170)
T d1r2qa_ 159 IFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHHHHH
T ss_conf 99999997754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-33 Score=175.86 Aligned_cols=156 Identities=21% Similarity=0.352 Sum_probs=123.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEE--EEEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 7669999189987689987674198323-5687671378--9998--397999997589988601065212587889999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++++|||||++++.++.+.. ..++....+. .... ..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 88999999999498999999972998875654434321257999899999888715677336778888872378589997
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--HHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 98999541999999999986388889984999985899879899--8689856199643686359997046789896999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|+++.+++..+..|+..+... .....|+++++||+|+.+... .++.... .+..++.+++|||++|.||+++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Saktg~~v~e~ 157 (166)
T d1z0fa1 84 YDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQF-----AEENGLLFLEASAKTGENVEDA 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHHHH
T ss_pred ECCCCHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHCCCHHHHHHHH-----HHHCCCEEEEEECCCCCCHHHH
T ss_conf 4067567777788889999861-456523999803656532102279999999-----9985998999868999799999
Q ss_pred HHHHHHHHH
Q ss_conf 999999985
Q 029675 170 LDWLSNNIA 178 (189)
Q Consensus 170 ~~~i~~~~~ 178 (189)
|..+++.+.
T Consensus 158 f~~i~~~i~ 166 (166)
T d1z0fa1 158 FLEAAKKIY 166 (166)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
T ss_conf 999999869
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-33 Score=176.50 Aligned_cols=161 Identities=21% Similarity=0.347 Sum_probs=126.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEE--EEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 7669999189987689987674198323-56876713789--998--397999997589988601065212587889999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++|+|||||++++.++++.. +.++....... ... ....+.+||++|++.+...+..++..+|++++|
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 82 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 48999999999399999999962999987566411011013321301688787641468632246778874046789999
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 9899954199999999998638888998499998589987989--98689856199643686359997046789896999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||+++++++..+..|+..+..... .++|+++++||+|+.... ..++.... .+..++.|++|||++|.||+++
T Consensus 83 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~-----a~~~~~~~~e~Sa~tg~~V~e~ 156 (173)
T d2a5ja1 83 YDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEGEAF-----AREHGLIFMETSAKTACNVEEA 156 (173)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEECTTTCTTHHHH
T ss_pred EEECCHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHHHHHHH-----HHHCCCEEEEECCCCCCCHHHH
T ss_conf 752584887767888999998579-9985999952775255444589988878-----9875987999448999799999
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999998512366
Q 029675 170 LDWLSNNIASKVSS 183 (189)
Q Consensus 170 ~~~i~~~~~~~~~~ 183 (189)
|..+++.+.++.++
T Consensus 157 f~~i~~~i~~~~~~ 170 (173)
T d2a5ja1 157 FINTAKEIYRKIQQ 170 (173)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999973
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4e-33 Score=176.00 Aligned_cols=161 Identities=20% Similarity=0.412 Sum_probs=127.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEE--EEEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 766999918998768998767419832-35687671378--9998--397999997589988601065212587889999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++++|||||++++.++.+. .+.||.+..+. .+.. ..+.+.+||++|++.+...+..++..+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 79999999999198999999972999865465301012023221111232234555687166788888887346507999
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 98999541999999999986388889984999985899879899868985619964368635999704678989699999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
||.+++.++.....|+........ ...|+++++||+|+.+......+........++..++.|++|||++|.||+++|.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~ 161 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHCCCCC-CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
T ss_conf 807844430345520211013333-3320232100234101100135469999999998699899934899958999999
Q ss_pred HHHHHHH
Q ss_conf 9999985
Q 029675 172 WLSNNIA 178 (189)
Q Consensus 172 ~i~~~~~ 178 (189)
.+++++.
T Consensus 162 ~i~~~i~ 168 (170)
T d1ek0a_ 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHHC
T ss_conf 9999755
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-33 Score=176.21 Aligned_cols=159 Identities=17% Similarity=0.242 Sum_probs=123.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEE-E--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEE
Q ss_conf 766999918998768998767419832-35687671378999-8--3979999975899886010652125878899999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE-Y--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~-~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.+||+++|++++|||||+++++++.|. .+.||.+..+.... . ..+.+.+||++|++.+. ....+++.++++++||
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCC-CCHHHHCCCCCCEEEC
T ss_conf 679999998997899999999739898763773100111211246632178885111222234-4315433641000102
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCC--CCHHHHHHHHCCCCCCCCCEEEEECCCCCCC-CHHHH
Q ss_conf 89995419999999999863888899849999858998798--9986898561996436863599970467898-96999
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGE-GLYEG 169 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~ 169 (189)
|+++++++..+..|+..........+.|+++++||+|+.+. ...++..+. .+..++.|++|||++|. ||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~-----a~~~~~~~~e~Saktg~gnV~e~ 155 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL-----ATELACAFYECSACTGEGNITEI 155 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTSEEEECCTTTCTTCHHHH
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCHHHHHHH-----HHHHCCEEEEECCCCCCCCHHHH
T ss_conf 5688653244554001121111346752266514102555325769999999-----99809959997554188199999
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999985123
Q 029675 170 LDWLSNNIASKV 181 (189)
Q Consensus 170 ~~~i~~~~~~~~ 181 (189)
|..+++.+.++.
T Consensus 156 F~~l~~~i~~~r 167 (168)
T d2atva1 156 FYELCREVRRRR 167 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999845
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.3e-32 Score=172.32 Aligned_cols=165 Identities=17% Similarity=0.211 Sum_probs=126.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEE-EEEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEE
Q ss_conf 57766999918998768998767419832-35687671378-9998--39799999758998860106521258788999
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 90 (189)
.+.+||+++|++|+|||||+++|+++.|. .+.||.+.... .+.. ....+.+||++|++.+...+..+++.+|++++
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECEEEEEECCCCCEEEEEECCCCCCCCHHHHHHCCCCCCEEEE
T ss_conf 60699999999997999999999749898544663110001100036863489860354300100102212344551445
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHH-HHHHHHCC--------CCCCC-CCEEEEECCC
Q ss_conf 99899954199999999998638888998499998589987989986-89856199--------64368-6359997046
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGL--------HSLRQ-RHWYIQSTCA 160 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~--------~~~~~-~~~~~~~~Sa 160 (189)
|||++++++|+.+..+|........ .+.|+++|+||+|+.+..... +....... ..++. ..+.|+||||
T Consensus 83 v~d~~~~~sf~~i~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA 161 (183)
T d1mh1a_ 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (183)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 2035347889989999999999738-998689984022221210015665111356303689999999819966999288
Q ss_pred CCCCCHHHHHHHHHHHHHHC
Q ss_conf 78989699999999998512
Q 029675 161 TSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~ 180 (189)
++|.||+++|..+++.++..
T Consensus 162 k~~~~V~e~F~~l~~~il~p 181 (183)
T d1mh1a_ 162 LTQRGLKTVFDEAIRAVLCP 181 (183)
T ss_dssp TTCTTHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHCCC
T ss_conf 88819999999999997479
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.3e-32 Score=172.35 Aligned_cols=160 Identities=18% Similarity=0.273 Sum_probs=127.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEEE-EE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 77669999189987689987674198323-568767137899-98--397999997589988601065212587889999
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETV-EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
+.+||+++|++++|||||+++|+++.+.. ..++.+..+... .. ..+.+.+||++|.+.+...+..+++.++++++|
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEECEEEEEEEEECCCCCCCCCCHHHHHHCCCCCCEE
T ss_conf 76699999979989999999998098898657741001011023101000233341157532233216653102333301
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 98999541999999999986388889984999985899879899868985619964368635999704678989699999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+|++++.++.....|+..+.......++|+++++||+|+.......+....+ .+..++.|++|||++|+||+++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~e~Sak~g~gi~e~f~ 157 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDL----ARSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHH----HHHHTCCEEECCTTTCTTHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHH----HHHHCCEEEEECCCCCCCHHHHHH
T ss_conf 1124335077888999999986378997099996145545444457788999----998098499985899948999999
Q ss_pred HHHHHHHH
Q ss_conf 99999851
Q 029675 172 WLSNNIAS 179 (189)
Q Consensus 172 ~i~~~~~~ 179 (189)
.+++.+.+
T Consensus 158 ~i~~~i~~ 165 (166)
T d1ctqa_ 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
T ss_conf 99999975
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=2.6e-33 Score=176.92 Aligned_cols=161 Identities=20% Similarity=0.373 Sum_probs=128.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEE--EEEEEC--CEEEEEEECCCCCCCHHCHHHHCCCCCEEEE
Q ss_conf 7766999918998768998767419832-3568767137--899983--9799999758998860106521258788999
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 90 (189)
+-+||+++|.+++|||||+++|+++.+. +..+|.+..+ ..+..+ .+.+.+||+||++.+..++..+++.++++|+
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~ 84 (173)
T d2fu5c1 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 84 (173)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 89999999999949999999997098887547645412789999999999999999899856458899985269989999
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCH--HHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 9989995419999999999863888899849999858998798998--68985619964368635999704678989699
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++.++..+..|+..+.... ..+.|+++++||+|....... ++.... ....++.|++|||++|+||++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~D~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~g~gv~e 158 (173)
T d2fu5c1 85 VYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKL-----ALDYGIKFMETSAKANINVEN 158 (173)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHH-----HHHHTCEEEECCC---CCHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCCHHHCCCHHHHHHHH-----HHHCCCEEEEEECCCCCCHHH
T ss_conf 998987144899988887765330-47852999982145200013079999877-----875598899995799989899
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999851236
Q 029675 169 GLDWLSNNIASKVS 182 (189)
Q Consensus 169 ~~~~i~~~~~~~~~ 182 (189)
+|+++++.+.++.+
T Consensus 159 ~f~~l~~~i~~k~~ 172 (173)
T d2fu5c1 159 AFFTLARDIKAKMD 172 (173)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998648
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.8e-32 Score=172.79 Aligned_cols=162 Identities=19% Similarity=0.338 Sum_probs=127.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCE--EEEEEEC--CEEEEEEECCCCCCCHHCHHHHCCCCCEEEE
Q ss_conf 77669999189987689987674198323-56876713--7899983--9799999758998860106521258788999
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|++++|||||++++.++.+.. ..++.+.. ...+..+ ...+.+||++|++.+...+..+++.++++++
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~ 82 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 82 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 78899999999909899999998299887656553210355799999988899842568737788888977540675899
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 99899954199999999998638888998499998589987989--9868985619964368635999704678989699
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||.++++++.....|+..+..... .++|+++|+||+|+.+.. ..+...... ......+++|||++|.|+++
T Consensus 83 v~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~g~~i~e 156 (175)
T d2f9la1 83 VYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNNLSFIETSALDSTNVEE 156 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCC-CCCCEEEEEEEECCCCCCCCHHHHHHHHH-----CCCCCEEEEEECCCCCCHHH
T ss_conf 9978886540347889999998458-99839999765154002433699987764-----04686699996499969999
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999998512366
Q 029675 169 GLDWLSNNIASKVSS 183 (189)
Q Consensus 169 ~~~~i~~~~~~~~~~ 183 (189)
+|+.+++.+.+....
T Consensus 157 ~f~~l~~~i~~~~~~ 171 (175)
T d2f9la1 157 AFKNILTEIYRIVSQ 171 (175)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999997503
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.1e-32 Score=171.69 Aligned_cols=158 Identities=18% Similarity=0.385 Sum_probs=125.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCEEEE--EEEC--CEEEEEEECCCCCCCHHCHHHHCCCCCEEE
Q ss_conf 77669999189987689987674198323--56876713789--9983--979999975899886010652125878899
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVET--VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~~--~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (189)
..+||+++|++++|||||+++++++++.. ..++++..... +... .+.+.+|||||++.+..++..+++++|+++
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i 84 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 68899999999929999999997199886541202300367778885483899999989983666888898614786558
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--HHHHHHHHCCCCCCCCCEEEEECCCCCCCCHH
Q ss_conf 9998999541999999999986388889984999985899879899--86898561996436863599970467898969
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
+|||+++++++.....++........ ...|+++++||+|+.+... .++.... .+..++.|++|||++|.||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~g~gi~ 158 (170)
T d2g6ba1 85 LLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKL-----AKEYGLPFMETSAKTGLNVD 158 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHH-----HHHHTCCEEECCTTTCTTHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCC-CCCEEEEEEEEECHHHCCCCCHHHHHHH-----HHHCCCEEEEEECCCCCCHH
T ss_conf 98628755550345555455443158-7735999973303032066569999999-----99849879998489896999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999851
Q 029675 168 EGLDWLSNNIAS 179 (189)
Q Consensus 168 ~~~~~i~~~~~~ 179 (189)
++|.++++.+.+
T Consensus 159 e~f~~l~~~i~k 170 (170)
T d2g6ba1 159 LAFTAIAKELKR 170 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999997389
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=8.5e-32 Score=169.59 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=123.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEE-EEEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEE
Q ss_conf 7669999189987689987674198323-5687671378-9998--3979999975899886010652125878899999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+.||+++|++++|||||+++++++.|.. +.||.+.... .+.. ..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHEEE
T ss_conf 66999999999598999999972999986587201011221025644776213332211112335541000123443023
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--------------CHHHHHHHHCCCCCCC-CCEEEEE
Q ss_conf 899954199999999998638888998499998589987989--------------9868985619964368-6359997
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQ-RHWYIQS 157 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~ 157 (189)
|++++++|+....+|........ .+.|+++|+||+|+.... ..++... ..+. ....|+|
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~-----~a~~~~~~~y~E 155 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-----MAKQIGAATYIE 155 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTCSEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHCCCEEEE
T ss_conf 03467779999887888874048-851699987403443342146777665417561999999-----999839975999
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHHC
Q ss_conf 0467898-9699999999998512
Q 029675 158 TCATSGE-GLYEGLDWLSNNIASK 180 (189)
Q Consensus 158 ~Sa~~~~-~i~~~~~~i~~~~~~~ 180 (189)
|||++|. +++++|+.+++.++.+
T Consensus 156 ~SAk~~~n~i~~~F~~~~~~~l~k 179 (179)
T d1m7ba_ 156 CSALQSENSVRDIFHVATLACVNK 179 (179)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 707989849999999999999559
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.1e-31 Score=165.82 Aligned_cols=161 Identities=24% Similarity=0.395 Sum_probs=129.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEE--EEEEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 7669999189987689987674198323-568767137--89998--397999997589988601065212587889999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|.+++|||||+++|.++++.. ..++.+... ..+.. ....+.+||+||++.+..++..++..+|++++|
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 86 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV 86 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 22899999899088999999971998875044221000367999951234899998998465588999997628889999
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC-CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 9899954199999999998638888998499998589987989-986898561996436863599970467898969999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
||++++.++.....|+..+.........|+++++||.|..... ...+..+ ..+..++.+++|||++|+||+++|
T Consensus 87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~-----~~~~~~~~~~e~Sa~tg~gv~e~f 161 (177)
T d1x3sa1 87 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK-----FARKHSMLFIEASAKTCDGVQCAF 161 (177)
T ss_dssp EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EECCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHH-----HHHHCCCEEEEEECCCCCCHHHHH
T ss_conf 989786122110222101102455443035787402333332334899999-----999779889998489997999999
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999851236
Q 029675 171 DWLSNNIASKVS 182 (189)
Q Consensus 171 ~~i~~~~~~~~~ 182 (189)
+++++.+.+...
T Consensus 162 ~~l~~~l~~~p~ 173 (177)
T d1x3sa1 162 EELVEKIIQTPG 173 (177)
T ss_dssp HHHHHHHHTSGG
T ss_pred HHHHHHHCCCCC
T ss_conf 999999735954
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=3.4e-31 Score=166.71 Aligned_cols=162 Identities=17% Similarity=0.280 Sum_probs=128.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEEE----CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEE
Q ss_conf 66999918998768998767419832-356876713789998----3979999975899886010652125878899999
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|.+++|||||+++++++.+. .+.||.+........ ....+.+||++|.......+..++..++++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99999999991989999999719898873884341231001330893477776403786411121122246755899830
Q ss_pred ECCCCCCHHHHHHHHHHHHCC---CCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 899954199999999998638---88899849999858998798998689856199643686359997046789896999
Q 029675 93 DSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
|.+++.++..+..|+..+... ....+.|+++++||+|+.+.....+....+. .....+.|++|||++|.||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~e~Sak~~~gI~e~ 159 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC---YSKNNIPYFETSAKEAINVEQA 159 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH---HHTTSCCEEECBTTTTBSHHHH
T ss_pred CCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH---HHHCCCEEEEECCCCCCCHHHH
T ss_conf 2541133210025678999873323356777899987503331201489999999---9865976999748989699999
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999851236
Q 029675 170 LDWLSNNIASKVS 182 (189)
Q Consensus 170 ~~~i~~~~~~~~~ 182 (189)
|+++++.+.++..
T Consensus 160 f~~l~~~i~~~~~ 172 (184)
T d1vg8a_ 160 FQTIARNALKQET 172 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999985505
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.8e-32 Score=169.77 Aligned_cols=161 Identities=15% Similarity=0.147 Sum_probs=123.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCCEEE--EEEE--CCEEEEEEECCCCCCC-HHCHHHHCCCCCEE
Q ss_conf 7766999918998768998767419832--35687671378--9998--3979999975899886-01065212587889
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKI-RPLWRHYFQNTQGL 88 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~--~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~~ 88 (189)
..+||+++|++++|||||++++.+..+. ...+|++.+.. .+.. ....+.+||+++..+. +.++..+++.+|++
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~ 81 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 78799999989929999999997286775665662553100000004885155556214431222212233333344203
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCCH
Q ss_conf 9999899954199999999998638888998499998589987989--98689856199643686359997046789896
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
|+|||++++.++..+..|+..+.......++|+++++||+|+.+.. ..++... ..+..++.|++|||++|.||
T Consensus 82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sak~g~~i 156 (172)
T d2g3ya1 82 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-----CAVVFDCKFIETSAAVQHNV 156 (172)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBSH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHH-----HHHHCCCEEEEEECCCCCCH
T ss_conf 3431122000122123555554300246771299984044533334542778899-----99876985999828999699
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999985123
Q 029675 167 YEGLDWLSNNIASKV 181 (189)
Q Consensus 167 ~~~~~~i~~~~~~~~ 181 (189)
+++|..+++.+..+.
T Consensus 157 ~~~f~~l~~~i~~rr 171 (172)
T d2g3ya1 157 KELFEGIVRQVRLRR 171 (172)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999999732
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-31 Score=168.37 Aligned_cols=160 Identities=23% Similarity=0.427 Sum_probs=128.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEE--EEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 766999918998768998767419832-356876713789--998--397999997589988601065212587889999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
-+||+++|.+++|||||+++++++.+. ...||.+..+.. +.. ..+.+.+||+||++.+..++..++++++++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 79999999999678999999986889876377423037899999889899999998999555689999997349899999
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 98999541999999999986388889984999985899879899868985619964368635999704678989699999
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
||.++++++.....++........ ...|++++++|.|+.+.....+....+. ...++.+++|||++|+||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~i~~~~k~d~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~e~f~ 156 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIFF 156 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHCCCC-CCCEEEEECCHHHHHHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHH
T ss_conf 989976579999754400010146-7650465211002332111599999999----86697699987999979999999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999985123
Q 029675 172 WLSNNIASKV 181 (189)
Q Consensus 172 ~i~~~~~~~~ 181 (189)
++++.+.++.
T Consensus 157 ~l~~~i~~k~ 166 (166)
T d1g16a_ 157 TLAKLIQEKI 166 (166)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHCC
T ss_conf 9999999619
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=9.6e-31 Score=164.51 Aligned_cols=158 Identities=16% Similarity=0.283 Sum_probs=124.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEEEEE-----CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEE
Q ss_conf 7669999189987689987674198323-56876713789998-----39799999758998860106521258788999
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 90 (189)
-+||+++|++++|||||+++|.++++.. ..+|.+........ ....+.+||++|++.+...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 38999999999698999999970988876376545310123464057631201221038720124677887521554899
Q ss_pred EEECCCCCCHHHHHHHHHHHHC---CCCCCCCEEEEEEECCCCCCCC---CHHH---HHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 9989995419999999999863---8888998499998589987989---9868---98561996436863599970467
Q 029675 91 VVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQDLPNAM---NAAE---ITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~p~ivv~nK~Dl~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
|||.+++.++..+..|+.++.. .....+.|+++++||+|+.+.. ..++ +....+ .+.|++|||+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-------~~~~~e~SA~ 154 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG-------DIPLFLTSAK 154 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT-------SCCEEEEBTT
T ss_pred EEECCCCCCCCHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHCC-------CCEEEEEECC
T ss_conf 850012333211332011566664101356686799812422012212015777889999809-------9769999189
Q ss_pred CCCCHHHHHHHHHHHHHHCC
Q ss_conf 89896999999999985123
Q 029675 162 SGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (189)
+|.||+++|+++++.++++.
T Consensus 155 ~g~gv~e~f~~l~~~~l~~~ 174 (175)
T d1ky3a_ 155 NAINVDTAFEEIARSALQQN 174 (175)
T ss_dssp TTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC
T ss_conf 99499999999999998641
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.97 E-value=1.3e-29 Score=158.97 Aligned_cols=166 Identities=58% Similarity=1.017 Sum_probs=149.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEEC
Q ss_conf 57766999918998768998767419832356876713789998397999997589988601065212587889999989
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
.+.+||+++|.+|+|||||++++.++.+....++.+........+...+.+|+.++...............+++++++|+
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 82 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 86329999999998999999999679876034132135654036866888750454111222001232101332113444
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 99541999999999986388889984999985899879899868985619964368635999704678989699999999
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 174 (189)
.+..++.....++............|+++++||.|+.+.....++...+.........+.+++|||++|.||+++|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~ 162 (169)
T d1upta_ 83 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 162 (169)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHCCHHHHCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 30100010000114666653035541799986055411011789999987788763898899975888979899999999
Q ss_pred HHHHHC
Q ss_conf 998512
Q 029675 175 NNIASK 180 (189)
Q Consensus 175 ~~~~~~ 180 (189)
+.+.++
T Consensus 163 ~~l~~k 168 (169)
T d1upta_ 163 ETLKSR 168 (169)
T ss_dssp HHHHTC
T ss_pred HHHHHC
T ss_conf 999957
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.6e-30 Score=160.82 Aligned_cols=160 Identities=14% Similarity=0.292 Sum_probs=124.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEE--EEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEE
Q ss_conf 77669999189987689987674198323-56876713789--998--39799999758998860106521258788999
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 90 (189)
.-+||+++|.+++|||||++++.++.+.. +.+|++..... ... ....+.+||++|.......+...+..++++++
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 84 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 84 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEECCCCCCEEHHHHHHHHHCCCEEEE
T ss_conf 34799999999979999999998497887656632321444555425840157652036860003455666506615789
Q ss_pred EEECCCCCCHHHHHHHHHHHHC---CCCCCCCEEEEEEECCCCCCC-CCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCH
Q ss_conf 9989995419999999999863---888899849999858998798-998689856199643686359997046789896
Q 029675 91 VVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
++|.+++.++.....|+..+.. .....+.|+++|+||+|+.+. ...++....... ...+.|++|||++|.||
T Consensus 85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~----~~~~~~~e~Sak~~~gI 160 (174)
T d1wmsa_ 85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETSAKDATNV 160 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECCTTTCTTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHH----CCCCEEEEECCCCCCCH
T ss_conf 98640246642246689999998510257772099941324054322769999999997----49975999768999499
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999851
Q 029675 167 YEGLDWLSNNIAS 179 (189)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (189)
+++|+.+++.++.
T Consensus 161 ~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 161 AAAFEEAVRRVLA 173 (174)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999950
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.2e-30 Score=161.41 Aligned_cols=159 Identities=12% Similarity=0.157 Sum_probs=120.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEE-EEEE--CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEE
Q ss_conf 5776699991899876899876741983235687671378-9998--397999997589988601065212587889999
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 91 (189)
...+||+++|++++|||||+++++++.+....++....+. .+.. ..+.+.+||++|+..+. +++.+|++|+|
T Consensus 3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV 77 (175)
T d2bmja1 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV 77 (175)
T ss_dssp CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCCCCCCC-----CCCCCCEEEEE
T ss_conf 8837999999899789999999971978776775540477874048568999985045321001-----35566536888
Q ss_pred EECCCCCCHHHHHHHHHHHHC--CCCCCCCEEEEEEECCCCCCCC----CHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 989995419999999999863--8888998499998589987989----9868985619964368635999704678989
Q 029675 92 VDSNDRDRVVEARDELHRMLN--EDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~--~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
||++++++|+.+..|...+.. .....+.|+++|+||.|+.... ...+...... +..++.|++|||++|.|
T Consensus 78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~----~~~~~~~~e~SAk~~~~ 153 (175)
T d2bmja1 78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA----DMKRCSYYETCATYGLN 153 (175)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH----TSTTEEEEEEBTTTTBT
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHCCHHHHHHHHHHH----HHCCCEEEEECCCCCCC
T ss_conf 61012112441578888899986403678617887530474044302105999999999----81997499907899969
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 69999999999851236
Q 029675 166 LYEGLDWLSNNIASKVS 182 (189)
Q Consensus 166 i~~~~~~i~~~~~~~~~ 182 (189)
|+++|..+++.+....+
T Consensus 154 v~~~F~~l~~~i~~~~~ 170 (175)
T d2bmja1 154 VDRVFQEVAQKVVTLRK 170 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999998620
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=9.1e-31 Score=164.62 Aligned_cols=154 Identities=21% Similarity=0.350 Sum_probs=117.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEE--EEE--CCEEEEEEECCCCCCCHH-CHHHHCCCCCEEE
Q ss_conf 77669999189987689987674198323-56876713789--998--397999997589988601-0652125878899
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRP-LWRHYFQNTQGLI 89 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i 89 (189)
|.+||+++|++++|||||++++.++.+.. ..++.+..... ... ....+.+||++|...... .+..+++++|+++
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCHHHCCCCCEEEECCCCCEE
T ss_conf 98999999999929899999997399988647642422001344564022179998505731103212103642788249
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCC---CC
Q ss_conf 999899954199999999998638888998499998589987989--9868985619964368635999704678---98
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATS---GE 164 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~ 164 (189)
+|||+++++++..+..|+..+.......++|+++++||+|+.+.. ..++..+. .+..++.|++|||++ +.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~SAkt~~~~~ 155 (165)
T d1z06a1 81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF-----ADTHSMPLFETSAKNPNDND 155 (165)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCCEEECCSSSGGGGS
T ss_pred EEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCHHHHHHHHH-----HHHCCCEEEEEECCCCCCCC
T ss_conf 9998523566665542127877632589971999921355001012169999999-----99879989998034297380
Q ss_pred CHHHHHHHHH
Q ss_conf 9699999999
Q 029675 165 GLYEGLDWLS 174 (189)
Q Consensus 165 ~i~~~~~~i~ 174 (189)
||+++|.+++
T Consensus 156 ~V~e~F~~lA 165 (165)
T d1z06a1 156 HVEAIFMTLA 165 (165)
T ss_dssp CHHHHHHHHC
T ss_pred CHHHHHHHHC
T ss_conf 7999999869
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.6e-28 Score=152.80 Aligned_cols=157 Identities=39% Similarity=0.640 Sum_probs=139.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECCCCC
Q ss_conf 69999189987689987674198323568767137899983979999975899886010652125878899999899954
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (189)
||+++|++|+|||||++++.++.+....||.+.........+....+||++|...+...+..+...++++++++|.++..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 81 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 81 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEEECEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHEEEEEEECCCCCHH
T ss_conf 89999999999999999995899871502462768995058756788740321134666765400004642300033402
Q ss_pred CHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCC-------CCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 19999999999863888899849999858998798998689856199643-------68635999704678989699999
Q 029675 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-------RQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
.+.....++..........+.|+++++||.|+.......++...+.+... ....+.+++|||++|+|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~ 161 (166)
T d2qtvb1 82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161 (166)
T ss_dssp GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 10345678776320010378549998413364123789999998633234688864244797899933788989999999
Q ss_pred HHHH
Q ss_conf 9999
Q 029675 172 WLSN 175 (189)
Q Consensus 172 ~i~~ 175 (189)
||.+
T Consensus 162 ~l~~ 165 (166)
T d2qtvb1 162 WLSQ 165 (166)
T ss_dssp HHTT
T ss_pred HHHC
T ss_conf 9848
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.96 E-value=3.4e-28 Score=152.18 Aligned_cols=164 Identities=29% Similarity=0.606 Sum_probs=141.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEE
Q ss_conf 25776699991899876899876741983235687671378999839799999758998860106521258788999998
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
..+..||+++|.+|+|||||+++|.++.+....++.+.....+...+..+..||++++......+.......+++++++|
T Consensus 10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 89 (186)
T d1f6ba_ 10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVD 89 (186)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 47777899999999898999999967887522402334325897436211223444004565677654023220112453
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCC------------CCCCCEEEEECCCC
Q ss_conf 999541999999999986388889984999985899879899868985619964------------36863599970467
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRQRHWYIQSTCAT 161 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~ 161 (189)
..+...+......+..........+.|+++++||.|+.......++........ .....+.+++|||+
T Consensus 90 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 169 (186)
T d1f6ba_ 90 CADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 169 (186)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 15742037789999875101235787469987324751218899999997204421333234677751378779998588
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 8989699999999998
Q 029675 162 SGEGLYEGLDWLSNNI 177 (189)
Q Consensus 162 ~~~~i~~~~~~i~~~~ 177 (189)
+|+|++++|+|+.+++
T Consensus 170 tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 170 KRQGYGEGFRWMAQYI 185 (186)
T ss_dssp TTBSHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 8989999999999842
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.7e-28 Score=153.70 Aligned_cols=164 Identities=24% Similarity=0.440 Sum_probs=132.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECC
Q ss_conf 77669999189987689987674198323568767137899983979999975899886010652125878899999899
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
+.+||+++|..++|||||+++|..+.+ .+.||+|....++......+++||++|++.++..+..+++.++++++|++.+
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 79 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 905999999999988999999967999-9981662799998402014442034664211343320023432046764035
Q ss_pred CCC----------CHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC------------------CHHH----HH-HH
Q ss_conf 954----------199999999998638888998499998589987989------------------9868----98-56
Q 029675 96 DRD----------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------------------NAAE----IT-DK 142 (189)
Q Consensus 96 ~~~----------s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------------~~~~----~~-~~ 142 (189)
+.. .+.+....|..++......+.|+++++||.|+.... .... +. ..
T Consensus 80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 159 (200)
T d2bcjq2 80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF 159 (200)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 23321344313001599999999997114206851798613011566514414777746310387335999999999999
Q ss_pred HCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 19964368635999704678989699999999998512
Q 029675 143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (189)
..........+.+++|||++|+||+++|+.+.+.+.++
T Consensus 160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~ 197 (200)
T d2bcjq2 160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197 (200)
T ss_dssp HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 97453679961787748981781999999999999997
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=2.5e-26 Score=143.21 Aligned_cols=161 Identities=27% Similarity=0.456 Sum_probs=125.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECC
Q ss_conf 77669999189987689987674198323568767137899983979999975899886010652125878899999899
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
+.+||+++|..|+|||||+++|..+.+ ||.+.....+......+++||++|++.++..+..+++.++++++|+|.+
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~ 76 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS 76 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC----CCCCEEEEEEEEEEEEEEEECCCCCCCCCCCHHHCCCCCCEEEEEEEEC
T ss_conf 916999999999888999998840897----9724799999743312210024665100111110146775366687503
Q ss_pred CCCCH----------HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCC-----------------CCHHHH----HHHH-
Q ss_conf 95419----------999999999863888899849999858998798-----------------998689----8561-
Q 029675 96 DRDRV----------VEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEI----TDKL- 143 (189)
Q Consensus 96 ~~~s~----------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------------~~~~~~----~~~~- 143 (189)
+.+++ .+...+|..++........|+++++||.|+... ....+. ...+
T Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 156 (195)
T d1svsa1 77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE 156 (195)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 42117777643678999999999996112027987899815321455413534887876640586438999999999999
Q ss_pred CCC-CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 996-4368635999704678989699999999998512
Q 029675 144 GLH-SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 144 ~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (189)
... ......+++++|||+++.||+++|+.+.+.++.+
T Consensus 157 ~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp TTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 97315678950558888688783999999999999756
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=2.7e-26 Score=143.06 Aligned_cols=162 Identities=26% Similarity=0.443 Sum_probs=128.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEEC
Q ss_conf 7766999918998768998767419832-356876713789998397999997589988601065212587889999989
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
|.+||+++|.+++|||||++++. +. ...||+|....++..+...+++||++|++.++..+..+++.+++++++++.
T Consensus 1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~ 77 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSS 77 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEET
T ss_pred CEEEEEEECCCCCCHHHHHHHHH---CCCCCCCEEEEEEEEEEEEEEEEEEECCCCEEEECCCCCCCCCCCCEEEEEEEC
T ss_conf 95899999899999899999884---689888724149999960144566513531144114233201000036799984
Q ss_pred CCCC----------CHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCC------------------CCHHHHH----HH
Q ss_conf 9954----------19999999999863888899849999858998798------------------9986898----56
Q 029675 95 NDRD----------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------------MNAAEIT----DK 142 (189)
Q Consensus 95 ~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------------~~~~~~~----~~ 142 (189)
.+.. .+.....++..++......+.|+++++||+|+... ....... ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 157 (200)
T d1zcba2 78 SEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVEC 157 (200)
T ss_dssp TCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHCHHHCCCEEEEEECCCHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 77010231010011446788999999617654696399982311456650245078774721368962699999999999
Q ss_pred HC-C-CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 19-9-64368635999704678989699999999998512
Q 029675 143 LG-L-HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 143 ~~-~-~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (189)
+. . .......+++++|||+++.||+++|+.+.+.+.++
T Consensus 158 f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~ 197 (200)
T d1zcba2 158 FRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 197 (200)
T ss_dssp HHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 9985558788846777825467589999999999999998
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=5.4e-26 Score=141.59 Aligned_cols=163 Identities=26% Similarity=0.403 Sum_probs=128.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEEC
Q ss_conf 57766999918998768998767419832356876713789998397999997589988601065212587889999989
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
++.+||+++|..|+|||||++++..+. ..||+|+....+..++..+++||++|++.++..|..+++.++++++|+|.
T Consensus 4 k~~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~ 80 (221)
T d1azta2 4 RATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVAS 80 (221)
T ss_dssp HHSEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEET
T ss_pred HHCCEEEEECCCCCCHHHHHHHHHCCC---CCCCCCEEEEEEEECCEEEEEEECCCCCEECCCHHHHCCCCCCEEEEEEC
T ss_conf 234779999899998899999895098---27888867899997769999986376512201123422566513799972
Q ss_pred CCC----------CCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCC------CCHH---------------------
Q ss_conf 995----------419999999999863888899849999858998798------9986---------------------
Q 029675 95 NDR----------DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------MNAA--------------------- 137 (189)
Q Consensus 95 ~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~~~--------------------- 137 (189)
++. ....+....|..++......++|+++++||+|+... ....
T Consensus 81 s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~ 160 (221)
T d1azta2 81 SSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGE 160 (221)
T ss_dssp TGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEECHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 54101322321057789989999998617543798389982046665653216742177748443566774212356787
Q ss_pred -------------HHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf -------------8985619964368635999704678989699999999998512
Q 029675 138 -------------EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 138 -------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (189)
.+.+...........+....|||+++.+|+.+|+.+.+.++..
T Consensus 161 ~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~ 216 (221)
T d1azta2 161 DPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM 216 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHHHH
T ss_conf 25699999999999999853478878731456662256299999999999999998
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=8.9e-25 Score=135.71 Aligned_cols=154 Identities=16% Similarity=0.045 Sum_probs=107.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC--CCC--CCCCCEEEEEEECCEEEEEEECCCCCCCHHC--------HHHHCCCC
Q ss_conf 66999918998768998767419832--356--8767137899983979999975899886010--------65212587
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT 85 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~ 85 (189)
-.|+++|.+|+|||||+++|++.... +.. .|...........+..+.+|||||....... ....+..+
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a 85 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 85 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHCCCCCCCCCCCC
T ss_conf 69999999999999999999688850331557732211211133200135530344311112222000011112222332
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 88999998999541999999999986388889984999985899879899868985619964368635999704678989
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
|++++|+|+.++.. ....++...+.... .+.|+++|+||+|+.... ++........ .....++++||++|.|
T Consensus 86 d~il~v~D~~~~~~--~~~~~i~~~l~~~~-~~~piilv~NK~Dl~~~~--~~~~~~~~~~---~~~~~~~~iSA~~~~g 157 (178)
T d1wf3a1 86 NAVVWVVDLRHPPT--PEDELVARALKPLV-GKVPILLVGNKLDAAKYP--EEAMKAYHEL---LPEAEPRMLSALDERQ 157 (178)
T ss_dssp SEEEEEEETTSCCC--HHHHHHHHHHGGGT-TTSCEEEEEECGGGCSSH--HHHHHHHHHT---STTSEEEECCTTCHHH
T ss_pred CCEEEEECHHHHHC--CCCCCHHHHEECCC-CCHHHHHHHCCCCCCCCH--HHHHHHHHHH---CCCCCEEEEECCCCCC
T ss_conf 00356551266301--32112012100123-220222200016000188--9999999862---1468659996678979
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 69999999999851
Q 029675 166 LYEGLDWLSNNIAS 179 (189)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (189)
++++++.+.+.+-+
T Consensus 158 i~~L~~~i~~~lpe 171 (178)
T d1wf3a1 158 VAELKADLLALMPE 171 (178)
T ss_dssp HHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999984889
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4.6e-24 Score=132.29 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=107.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC--CCCC--CCCCEEEEEEECCEEEEEEECCCCCCCHH--------CHHHHCCC
Q ss_conf 766999918998768998767419832--3568--76713789998397999997589988601--------06521258
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQN 84 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 84 (189)
.++|+++|.+|+|||||+|+|++.... ...+ +.......+...+..+.++|+||...... ....++..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98999989999989999999968886675124664220476532026823541365321224652024789999999874
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCC
Q ss_conf 78899999899954199999999998638888998499998589987989986898561996436863599970467898
Q 029675 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (189)
+|++++++|..+..++.....+...+... . .+.|+++++||+|+.+... ...+.....++++||++|.
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~-~~~~iilv~NK~Dl~~~~~----------~~~~~~~~~~~~iSAk~~~ 148 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFIARL-P-AKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTGE 148 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHS-C-TTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTCT
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHHHHC-C-CCCCEEECCCHHHHHHHHH----------HHHHHCCCCEEEEECCCCC
T ss_conf 13320110256542034555444555420-1-4101020465444335588----------7987279967999788898
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 9699999999998
Q 029675 165 GLYEGLDWLSNNI 177 (189)
Q Consensus 165 ~i~~~~~~i~~~~ 177 (189)
|++++++++.+.+
T Consensus 149 gi~~L~~~l~~~l 161 (161)
T d2gj8a1 149 GVDVLRNHLKQSM 161 (161)
T ss_dssp THHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHC
T ss_conf 9999999998139
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.91 E-value=1.6e-24 Score=134.44 Aligned_cols=162 Identities=16% Similarity=0.179 Sum_probs=113.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---CC-------CCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCC
Q ss_conf 25776699991899876899876741983235---68-------767137899983979999975899886010652125
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IP-------TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~---~~-------t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 83 (189)
..+.++|+++|++++|||||+|+|++...... .+ +.......+...+..+.++|+||+..+.......+.
T Consensus 2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~ 81 (179)
T d1wb1a4 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD 81 (179)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 98987999990778709999999997439562022330012133022230000137852110125322321000123443
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHH---HHHCCCCCCCCCEEEEECCC
Q ss_conf 878899999899954199999999998638888998499998589987989986898---56199643686359997046
Q 029675 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT---DKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Sa 160 (189)
.+|++++|+|+.+....+. ...+. .+.. .++|+++++||+|+.+........ .............+++++||
T Consensus 82 ~~d~~ilv~d~~~g~~~~~-~~~~~-~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA 156 (179)
T d1wb1a4 82 IIDLALIVVDAKEGPKTQT-GEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 156 (179)
T ss_dssp SCCEEEEEEETTTCSCHHH-HHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred HCCCCCCCCCCCCCCCHHH-HHHHH-HHHH---CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 0243212122222110234-54455-5552---59762011232344577888889999999998750578873899876
Q ss_pred CCCCCHHHHHHHHHHHHHHC
Q ss_conf 78989699999999998512
Q 029675 161 TSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~ 180 (189)
++|+|++++++.+.+.+-+.
T Consensus 157 ~~g~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 157 KTGFGVDELKNLIITTLNNA 176 (179)
T ss_dssp TTCTTHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHCCCCC
T ss_conf 67829999999999618862
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=1.6e-23 Score=129.68 Aligned_cols=156 Identities=23% Similarity=0.249 Sum_probs=103.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-C--CCCCCCCEEEEEEE-CCEEEEEEECCCCCC-------CHHCHHHHCCCCCE
Q ss_conf 6999918998768998767419832-3--56876713789998-397999997589988-------60106521258788
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNISFTVWDVGGQDK-------IRPLWRHYFQNTQG 87 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d~ 87 (189)
+|+++|.+|+|||||+|+|++.... . ...|+...+..... .+..+.+|||||... ........+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEECEEEECCCCEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89998999998999999996899715346897166656415523787489828880652751777999999998775345
Q ss_pred EEEEEECCCCC--CHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 99999899954--1999999999986388889984999985899879899868985619964368635999704678989
Q 029675 88 LIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 88 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
+++++|..... .+.....++..... ...++|+++++||+|+......+++.+.+.. .+..++.+||++|.|
T Consensus 83 ~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~iSA~tg~g 155 (180)
T d1udxa2 83 LLYVLDAADEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEEEAVKALADALAR-----EGLAVLPVSALTGAG 155 (180)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----TTSCEEECCTTTCTT
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECCCCCC
T ss_conf 665300124653210133444311220--0010211011556655527789999999975-----698389997678889
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 6999999999985123
Q 029675 166 LYEGLDWLSNNIASKV 181 (189)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (189)
++++++.+.+.+....
T Consensus 156 id~L~~~i~~~l~~~~ 171 (180)
T d1udxa2 156 LPALKEALHALVRSTP 171 (180)
T ss_dssp HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999876269
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=5.3e-23 Score=127.18 Aligned_cols=159 Identities=26% Similarity=0.356 Sum_probs=116.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEE---CCEEEEEEECCCCCCCH-HCHHHHCCCCCEEEEEEE
Q ss_conf 66999918998768998767419832356876713789998---39799999758998860-106521258788999998
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIR-PLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~d 93 (189)
.+|+++|++++|||||+++|.++.+....+|.+.....+.. ....+.+||++|++.++ ..+..++..++++++|+|
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D 80 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD 80 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 98999999998989999999809987642870278999999645435444420211234330156665543055634777
Q ss_pred CCCCCC-HHHHHHHHHHHHCC--CCCCCCEEEEEEECCCCCCCCCHHHHHHHHC------------------------CC
Q ss_conf 999541-99999999998638--8889984999985899879899868985619------------------------96
Q 029675 94 SNDRDR-VVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG------------------------LH 146 (189)
Q Consensus 94 ~~~~~s-~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------------------------~~ 146 (189)
+++..+ +.....++..++.. .....+|+++++||+|+.+....+++.+.+. ..
T Consensus 81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
T d2fh5b1 81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQ 160 (207)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHH
T ss_conf 66653459999999999997688751589479999885467888999999999987515531014542120042556666
Q ss_pred C--------C--CCCCEEEEECCCCCCCC------HHHHHHHHHHH
Q ss_conf 4--------3--68635999704678989------69999999999
Q 029675 147 S--------L--RQRHWYIQSTCATSGEG------LYEGLDWLSNN 176 (189)
Q Consensus 147 ~--------~--~~~~~~~~~~Sa~~~~~------i~~~~~~i~~~ 176 (189)
. + ...+..++++|++++.+ ++.+-+|+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 161 LGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp SSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 0452214457756577379996614787653432299999999972
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=1.2e-23 Score=130.32 Aligned_cols=155 Identities=19% Similarity=0.160 Sum_probs=106.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--C--CCCCCCCEEEEEEECCEEEEEEECCCCCCC---------HHCHHHHCCCC
Q ss_conf 6999918998768998767419832--3--568767137899983979999975899886---------01065212587
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQNT 85 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~~~~--~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~~ 85 (189)
.|+++|.+|+|||||+++|++.... + ...|.......+......+.++|++|.... .......+..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 89999999998999999996777530314476353132221221221111124542132101223322220000235557
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 88999998999541999999999986388889984999985899879899868985619964368635999704678989
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
|+++++.+........ ...+...+.. .++|+++++||+|+.+....+...+..... ...++++||++|.|
T Consensus 82 d~i~~~~~~~~~~~~~--~~~~~~~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~i~iSAk~g~g 151 (171)
T d1mkya1 82 DLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREFEREVKPELYSLG-----FGEPIPVSAEHNIN 151 (171)
T ss_dssp SEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGGGS-----SCSCEECBTTTTBS
T ss_pred CEEEEEECCCCCCCCC--CCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-----CCCEEEEECCCCCC
T ss_conf 1899960112112222--1111222222---221100131023345565667889998618-----99769996678989
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 699999999998512366
Q 029675 166 LYEGLDWLSNNIASKVSS 183 (189)
Q Consensus 166 i~~~~~~i~~~~~~~~~~ 183 (189)
++++++++.+.+.++...
T Consensus 152 id~L~~~i~~~l~e~~~~ 169 (171)
T d1mkya1 152 LDTMLETIIKKLEEKGLD 169 (171)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCCCCC
T ss_conf 999999999869777888
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=2.1e-23 Score=129.08 Aligned_cols=163 Identities=17% Similarity=0.119 Sum_probs=109.1
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCC--CCCCCEEEEEEECCEEEEEEECCCCCC------------CH
Q ss_conf 50257766999918998768998767419832--356--876713789998397999997589988------------60
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDK------------IR 75 (189)
Q Consensus 12 ~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~------------~~ 75 (189)
+...+.++|+++|.+++|||||+|+|++.... +.. .+.......+...+..+.++|+||... ..
T Consensus 3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 82 (186)
T d1mkya2 3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSN 82 (186)
T ss_dssp CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 88788888999999999999999999778762242256543332001220499234652368851012212222100011
Q ss_pred HCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCE
Q ss_conf 10652125878899999899954199999999998638888998499998589987989--9868985619964368635
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHW 153 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 153 (189)
......++.+|++++|+|+..+.. .....+..++.. .+.|+++++||+|+.... ...++.+.+..........
T Consensus 83 ~~~~~~~~~~dvii~v~d~~~~~~--~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (186)
T d1mkya2 83 YRVVDSIEKADVVVIVLDATQGIT--RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS 157 (186)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHHHHCCCEEEEEECCCCCCH--HHHHHHHHHHHH---CCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 778989860999999603456502--668899999997---088605300100011010110256899999885116898
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99970467898969999999999851
Q 029675 154 YIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (189)
+++++||++|.|++++++.+...+..
T Consensus 158 ~i~~vSa~~g~gv~~L~~~i~~~~~~ 183 (186)
T d1mkya2 158 PLIFTSADKGWNIDRMIDAMNLAYAS 183 (186)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 08998678998999999999999970
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=1.5e-22 Score=125.02 Aligned_cols=146 Identities=25% Similarity=0.321 Sum_probs=107.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC--CCC--CCCCCEEEEEEECCEEEEEEECCCCCCC---------HHCHHHHCCC
Q ss_conf 66999918998768998767419832--356--8767137899983979999975899886---------0106521258
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQN 84 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~ 84 (189)
+||+++|.+++|||||+|+|++.... +.. .+.......+...+..+.+||+||.... .......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999999589963553035632111047997589058861666612577007788999999999986
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCC
Q ss_conf 78899999899954199999999998638888998499998589987989986898561996436863599970467898
Q 029675 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (189)
+|++++|+|++++....... .+ ... ...++++++||.|+.+....+++...+... .+++++||++|.
T Consensus 81 ad~ii~v~d~~~~~~~~~~~-~~-~~~-----~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~------~~~~~vSA~~g~ 147 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGE 147 (160)
T ss_dssp CSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTCS------TTEEEEEGGGTC
T ss_pred CCEEEEEEECCCCCCHHHHH-HH-HHC-----CCCCCEEEEEECCCCCHHHHHHHHHHHCCC------CCEEEEECCCCC
T ss_conf 99999997478886256666-53-312-----243100234301343303469999984799------967999788998
Q ss_pred CHHHHHHHHHHH
Q ss_conf 969999999999
Q 029675 165 GLYEGLDWLSNN 176 (189)
Q Consensus 165 ~i~~~~~~i~~~ 176 (189)
|++++++.+.++
T Consensus 148 gi~~L~~~I~ke 159 (160)
T d1xzpa2 148 GLEKLEESIYRE 159 (160)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC
T ss_conf 999999999763
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=4.6e-23 Score=127.44 Aligned_cols=156 Identities=19% Similarity=0.275 Sum_probs=100.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEEECCEEEEEEECCCCCCC---------------HHCHHHHC
Q ss_conf 6999918998768998767419832-3568767137899983979999975899886---------------01065212
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKI---------------RPLWRHYF 82 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~---------------~~~~~~~~ 82 (189)
.|+++|.+|+|||||+|+|.+.... +..|.+......+...+ +.++|+||.... ........
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 79 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCEEECCCCCCCCC--CEECCCCCCEECCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689853527897720454244223--11003677500121111122221024566665301
Q ss_pred CCCCEEEEEEECCCCCCHHHH---------HHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--HHHHHHHHCCCCCCCC
Q ss_conf 587889999989995419999---------99999986388889984999985899879899--8689856199643686
Q 029675 83 QNTQGLIFVVDSNDRDRVVEA---------RDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQR 151 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~---------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~ 151 (189)
+.+|++++|+|...+...... ...+...+.. .+.|+++|+||+|+....+ ...+...+... ....
T Consensus 80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~-~~~~ 155 (184)
T d2cxxa1 80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEI 155 (184)
T ss_dssp GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGGH
T ss_pred CCCCHHEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHH---CCCCEEEEEEEEEHHHHHHHHHHHHHHHHCCC-CCCC
T ss_conf 1133002664223551011134331320778999999998---49988998764322435788999999984565-1126
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 35999704678989699999999998512
Q 029675 152 HWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (189)
...++++||++|.|++++++.+.+.+.+|
T Consensus 156 ~~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 156 DKVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp HHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 87389997788989999999999875699
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.89 E-value=1.2e-22 Score=125.50 Aligned_cols=159 Identities=20% Similarity=0.179 Sum_probs=103.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC---CCCCCEEE------------------EEEECCEEEEEEECCCCCCCHHC
Q ss_conf 6999918998768998767419832356---87671378------------------99983979999975899886010
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVE------------------TVEYKNISFTVWDVGGQDKIRPL 77 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~~~~~~~---~t~~~~~~------------------~~~~~~~~~~i~D~~G~~~~~~~ 77 (189)
.|+++|++++|||||+++|++....... .+...... .+...+..+.++||||+..|...
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~ 86 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL 86 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCHHEECCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCC
T ss_conf 79999699854999999998236600145745453153123210122344433210011011134223464110000011
Q ss_pred HHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHH---HHHH-------------
Q ss_conf 652125878899999899954199999999998638888998499998589987989986---8985-------------
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---EITD------------- 141 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~------------- 141 (189)
....+..+|++|+|+|+.+.-.. ........+.. .++|+++++||+|+.+..... .+..
T Consensus 87 ~~~~~~~~D~~ilVvda~~g~~~--~~~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 161 (227)
T d1g7sa4 87 RKRGGALADLAILIVDINEGFKP--QTQEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (227)
T ss_dssp BCSSSBSCSEEEEEEETTTCCCH--HHHHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred CHHCCCCCCEEEEEEECCCCCCC--CHHHHHHHHHC---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 10001246458999861237632--02577777643---79759999989307881455446788875420308889899
Q ss_pred ---------HH---CC-------CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf ---------61---99-------6436863599970467898969999999999851236
Q 029675 142 ---------KL---GL-------HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 142 ---------~~---~~-------~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (189)
.+ .. .........++++||.+|.|++++++.+.....+.+.
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~ 221 (227)
T d1g7sa4 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR 221 (227)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999866566651231001577749993489898999999999999999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=1.2e-22 Score=125.37 Aligned_cols=162 Identities=12% Similarity=0.044 Sum_probs=100.6
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCC---CCCCCCCCEEEEEEECCEEEEEEECCCCCCC-------------
Q ss_conf 550257766999918998768998767419832---3568767137899983979999975899886-------------
Q 029675 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQDKI------------- 74 (189)
Q Consensus 11 ~~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~------------- 74 (189)
+.|.....+|+++|.+|+|||||+|+|.+.... ...++.......... ...+.+.|+++....
T Consensus 17 ~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 95 (195)
T d1svia_ 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCC-CCCCEEEEEEEECCCCCCCCCCCHHHHH
T ss_conf 799889989999899998799999985298746886034651230121124-5431378887513321122211103667
Q ss_pred HHCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf 01065212587889999989995419999999999863888899849999858998798998689856199643686359
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
..........++++++|+|+..+.. .....+...+.. .++|+++++||+|+.+.....+..+.............
T Consensus 96 ~~~~~~~~~~~~~vi~viD~~~~~~--~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (195)
T d1svia_ 96 IETYITTREELKAVVQIVDLRHAPS--NDDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHCCCCCHHHHHHHHHCCCCCC--CCCCCCCCCCCC---CCCCCEECHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 7654311211012222120145642--122211000002---55751100012032588889999999999864169997
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 997046789896999999999985
Q 029675 155 IQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (189)
++.+||++|.|++++++++.+.+-
T Consensus 171 ~~~~SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 171 LILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899968899899999999999829
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.87 E-value=2e-22 Score=124.34 Aligned_cols=159 Identities=17% Similarity=0.058 Sum_probs=102.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC------CCCCCCCEEE----------------------------EEEECC
Q ss_conf 577669999189987689987674198323------5687671378----------------------------999839
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVE----------------------------TVEYKN 60 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~~------~~~t~~~~~~----------------------------~~~~~~ 60 (189)
+..++|+++|+.++|||||+++|++..... ...+...... ......
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCE
T ss_conf 99708999972488699999999704121228898760221036134335656654332025411342344331025643
Q ss_pred EEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHH-
Q ss_conf 7999997589988601065212587889999989995419999999999863888899849999858998798998689-
Q 029675 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI- 139 (189)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~- 139 (189)
..+.++|+||+.+|.......+..+|++|+|+|+.+.-.-......+.. +... ...|++|+.||+|+.+.......
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~-~~~~--~i~~iIV~vNK~Dl~~~~~~~~~~ 162 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVA-LGII--GVKNLIIVQNKVDVVSKEEALSQY 162 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHH-HHHT--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHH-HHHC--CCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 7889842613888876401425026644200000140133267899999-9981--983265414567876514789999
Q ss_pred ---HHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf ---856199643686359997046789896999999999985
Q 029675 140 ---TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 140 ---~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (189)
...+.. .....++++++||++|.||+++++.+...+-
T Consensus 163 ~~~~~~l~~--~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip 202 (205)
T d2qn6a3 163 RQIKQFTKG--TWAENVPIIPVSALHKINIDSLIEGIEEYIK 202 (205)
T ss_dssp HHHHHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHCC--CCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999998531--1689886999767888784999998885289
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.87 E-value=1.5e-22 Score=125.01 Aligned_cols=158 Identities=20% Similarity=0.109 Sum_probs=102.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC----C--CCCCCCEEEE-----------------------EEECCEEEEE
Q ss_conf 577669999189987689987674198323----5--6876713789-----------------------9983979999
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT----T--IPTIGFNVET-----------------------VEYKNISFTV 65 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~~----~--~~t~~~~~~~-----------------------~~~~~~~~~i 65 (189)
+..++|+++|+.++|||||+++|++..... . ..|....+.. .......+.+
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEE
T ss_conf 99579999934588499999999703446668999717653334212223135302103422566554102057504765
Q ss_pred EECCCCCCCHHCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHH----HHH
Q ss_conf 9758998860106521258788999998999541999999999986388889984999985899879899868----985
Q 029675 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITD 141 (189)
Q Consensus 66 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~ 141 (189)
+|+||+..|.......+..+|++++|+|+.+........+.+...... ..++++++.||+|+.+.....+ +.+
T Consensus 83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~ 159 (195)
T d1kk1a3 83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 159 (195)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 243103556677653322223310000113566653167999999982---37552345412330246888879999999
Q ss_pred HHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 619964368635999704678989699999999998
Q 029675 142 KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (189)
.+... ....++++++||++|+|++++++.+.+.+
T Consensus 160 ~~~~~--~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 160 FIEGT--VAENAPIIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp HHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHCCC--CCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 96300--47988699987788979899999989778
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.86 E-value=1.2e-21 Score=120.62 Aligned_cols=156 Identities=22% Similarity=0.230 Sum_probs=101.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CC-CCCCCCEEEEEEEC-CEEEEEEECCCCC----CCHHC---HHHHCCCCCE
Q ss_conf 6999918998768998767419832--35-68767137899983-9799999758998----86010---6521258788
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYK-NISFTVWDVGGQD----KIRPL---WRHYFQNTQG 87 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~----~~~~~---~~~~~~~~d~ 87 (189)
+|+++|.+|+|||||+|+|.+.... .. ..|........... ...+.+|||||.. ..... ....+..++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 82 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEECCCCCEEEEEECEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 69998999987999999996899735558984475654505731896899814787556760778999999999998554
Q ss_pred EEEEEECCCCCCHHHH--H--HHHHHHHCCCCCCCCEEEEEEECCCCCCCCCH-HHHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 9999989995419999--9--99999863888899849999858998798998-68985619964368635999704678
Q 029675 88 LIFVVDSNDRDRVVEA--R--DELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~--~--~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
++++++....+..... . .............++|+++++||+|+.+.... +.+...+. .+.+++.+||++
T Consensus 83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------~~~~v~~iSA~~ 156 (185)
T d1lnza2 83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFPISAVT 156 (185)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCCCSSCC
T ss_pred HHHEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHC------CCCCEEEEECCC
T ss_conf 55201210343310233322332101000111037860231012432768999999999732------699489997888
Q ss_pred CCCHHHHHHHHHHHHHHC
Q ss_conf 989699999999998512
Q 029675 163 GEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (189)
|.|++++++.+.+.+.+.
T Consensus 157 g~Gi~~L~~~i~~~L~~~ 174 (185)
T d1lnza2 157 REGLRELLFEVANQLENT 174 (185)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHHHC
T ss_conf 989999999999961237
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.85 E-value=1.6e-21 Score=120.08 Aligned_cols=157 Identities=17% Similarity=0.071 Sum_probs=105.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-------C---------C-CC--CCCCCCEEEEEEECCEEEEEEECCCCCCCHH
Q ss_conf 77669999189987689987674198-------3---------2-35--6876713789998397999997589988601
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE-------I---------V-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~-------~---------~-~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (189)
..++|+++|++++|||||+++|++.. + . +. .-|.+.....+.+....+.++|+||+.+|..
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~ 81 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECEEEEEEECCCCHHHHHH
T ss_conf 97189999588980999999999999873761255654104656550788417723699981215687523731677899
Q ss_pred CHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC-HHHH----HHHHCCCCCCCC
Q ss_conf 06521258788999998999541999999999986388889984999985899879899-8689----856199643686
Q 029675 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEI----TDKLGLHSLRQR 151 (189)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~----~~~~~~~~~~~~ 151 (189)
.....+..+|++++|+|+.+...-+. .+.+...... ...|++++.||+|+.+... .+.+ ...+....+...
T Consensus 82 ~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 157 (196)
T d1d2ea3 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (196)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHH-HHHHHHHHHH---CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99998754376799998688876348-9999999985---5884899985565666087899999999999997199955
Q ss_pred CEEEEECCCCCC----------CCHHHHHHHHHHH
Q ss_conf 359997046789----------8969999999999
Q 029675 152 HWYIQSTCATSG----------EGLYEGLDWLSNN 176 (189)
Q Consensus 152 ~~~~~~~Sa~~~----------~~i~~~~~~i~~~ 176 (189)
..+++.+|+++| .++.++++.+.+.
T Consensus 158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~ 192 (196)
T d1d2ea3 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (196)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 58799989452646568444637889999999851
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.84 E-value=6e-20 Score=112.43 Aligned_cols=151 Identities=16% Similarity=0.102 Sum_probs=103.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCCC--CC----------------------------------CCCCCCCCEEEEE
Q ss_conf 02577669999189987689987674198--32----------------------------------3568767137899
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------------------------TTIPTIGFNVETV 56 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~~~--~~----------------------------------~~~~t~~~~~~~~ 56 (189)
-....++|+++|+.++|||||+.+|+... +. ....+.......+
T Consensus 5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 84 (222)
T d1zunb3 5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 84 (222)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCCCCCEEEEEEE
T ss_conf 13775559999378989899999999986983567889999889862865441221001464134431587731557898
Q ss_pred EECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-CEEEEEEECCCCCCCCC
Q ss_conf 98397999997589988601065212587889999989995419999999999863888899-84999985899879899
Q 029675 57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPNAMN 135 (189)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~~ 135 (189)
...+..+.++|+||+..|-.........+|++++|+|+.+.-.-+.. ....++.. .+ +.++++.||+|+.+..+
T Consensus 85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~--e~~~~~~~---~gv~~iiv~vNK~D~~~~~~ 159 (222)
T d1zunb3 85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASL---LGIKHIVVAINKMDLNGFDE 159 (222)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHH---TTCCEEEEEEECTTTTTSCH
T ss_pred ECCCEEEEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHH--HHHHHHHH---CCCCEEEEEEECCCCCCCCC
T ss_conf 41523799981663255433321466557668987204567663338--99999998---39987999987001455520
Q ss_pred H--H----HHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 8--6----8985619964368635999704678989699
Q 029675 136 A--A----EITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 136 ~--~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
. . ++...+....+....+.++++||.+|.|+.+
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 160 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred EEHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC
T ss_conf 000356777765567520489960899977546746875
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=2.1e-19 Score=109.84 Aligned_cols=114 Identities=22% Similarity=0.151 Sum_probs=88.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC--C------------CCC-------CCCCCCCEEEEEEECCEEEEEEECCCCCC
Q ss_conf 57766999918998768998767419--8------------323-------56876713789998397999997589988
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG--E------------IVT-------TIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~--~------------~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (189)
.+..+|+++|+.++|||||+.+++.. . ... ...|+......+.+++.+++++||||+.+
T Consensus 4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d 83 (276)
T d2bv3a2 4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD 83 (276)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS
T ss_pred HHCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHH
T ss_conf 02029999958989989999999996485340233651846985658887518860011234315983899952786022
Q ss_pred CHHCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 601065212587889999989995419999999999863888899849999858998798
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (189)
|.......++-+|++|+|+|..+.-..+. ...|..... .++|.++++||.|....
T Consensus 84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T-~~~w~~a~~----~~lP~i~fINKmDr~~a 138 (276)
T d2bv3a2 84 FTIEVERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQAEK----YKVPRIAFANKMDKTGA 138 (276)
T ss_dssp CSTTHHHHHHHCCEEEEEEETTTSSCHHH-HHHHHHHHT----TTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHHHEEEECCCCCCCCHHH-HHHHHHHHH----CCCCEEEEEECCCCCCC
T ss_conf 69999999996300577322567744669-999999998----59997999864456543
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=6e-20 Score=112.42 Aligned_cols=142 Identities=17% Similarity=0.114 Sum_probs=96.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC--------C-----CCC-------CCCCCCEEEEEEECCEEEEEEECCCCCCCH
Q ss_conf 77669999189987689987674198--------3-----235-------687671378999839799999758998860
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE--------I-----VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~--------~-----~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (189)
..++|+++|++++|||||+++|+... + ... .-|++.....+.+.+..+.++||||+.+|.
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~ 81 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 81 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHCCCEEEEEEEEEEEECCEEEEEEECCCCHHHH
T ss_conf 97199999478984999999999985230477411354311345577558757984379997088189998289826549
Q ss_pred HCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCE-EEEEEECCCCCCCCC-HHHH----HHHHCCCCCC
Q ss_conf 106521258788999998999541999999999986388889984-999985899879899-8689----8561996436
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEI----TDKLGLHSLR 149 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~~~----~~~~~~~~~~ 149 (189)
......+..+|++|+|+|+.+.-..+.. ..|..... .++| +++++||+|+.+..+ .+++ ...+....+.
T Consensus 82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~-~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 156 (204)
T d2c78a3 82 KNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 156 (204)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH----CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999878999999989999847899-99999998----599938999985366798899999999999998744999
Q ss_pred CCCEEEEECCCCC
Q ss_conf 8635999704678
Q 029675 150 QRHWYIQSTCATS 162 (189)
Q Consensus 150 ~~~~~~~~~Sa~~ 162 (189)
.....++..|+..
T Consensus 157 ~~~i~~i~~sa~~ 169 (204)
T d2c78a3 157 GDEVPVIRGSALL 169 (204)
T ss_dssp TTTSCEEECCHHH
T ss_pred CCCCEEEEEECHH
T ss_conf 6542340023224
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.80 E-value=1.7e-18 Score=105.39 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=84.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC--C------------CC-------CCCCCCCEEEEEEECCEEEEEEECCCCCCCHH
Q ss_conf 669999189987689987674198--3------------23-------56876713789998397999997589988601
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGE--I------------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~~--~------------~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (189)
.+|+++|+.++|||||+.+++... . .. ...|+......+.+++.++.++||||+.+|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCHHCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCHHHHHH
T ss_conf 09999948898099999999997097553066222211356269888738768751022223432106880681554335
Q ss_pred CHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 0652125878899999899954199999999998638888998499998589987
Q 029675 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (189)
.....++-+|++++|+|..+.-..+.. ..|..... .++|.++++||+|..
T Consensus 83 e~~~al~~~D~avlvvda~~Gv~~~t~-~~~~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 83 EIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCHHH-HHHHHHHH----CCCCCCCCCCCCCCC
T ss_conf 565431246733898423577421157-88776554----044310133320222
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=2.4e-19 Score=109.50 Aligned_cols=160 Identities=21% Similarity=0.286 Sum_probs=103.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHH----CCCCCEEEEE
Q ss_conf 776699991899876899876741983235687671378999839799999758998860106521----2587889999
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY----FQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d~~i~v 91 (189)
..-.|+++|.+|+|||||+|+|+++++... .|.......+...+..+.+||+||+......+..+ ...++.++++
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~-tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 80 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCE-EEECCEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 988999999999889999999967999982-7762428999858848999852555321367999998876412456248
Q ss_pred EECCC-CCCHHHHHHHHHHHH---CCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHC-----------------------
Q ss_conf 98999-541999999999986---388889984999985899879899868985619-----------------------
Q 029675 92 VDSND-RDRVVEARDELHRML---NEDELRDAVLLVFANKQDLPNAMNAAEITDKLG----------------------- 144 (189)
Q Consensus 92 ~d~~~-~~s~~~~~~~~~~~~---~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----------------------- 144 (189)
+|... ..++.....++.... ......++|+++++||+|+.+......+...+.
T Consensus 81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (209)
T d1nrjb_ 81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINE 160 (209)
T ss_dssp EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCH
T ss_conf 99734623399999999999999999874369869999800345567689999999998878899873887256523420
Q ss_pred ----------------CCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf ----------------9643-68635999704678989699999999998
Q 029675 145 ----------------LHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 145 ----------------~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (189)
..+. ......+.+.|++. .+++++.+|+.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~i~ekl 209 (209)
T d1nrjb_ 161 EDYAENTLDVLQSTDGFKFANLEASVVAFEGSINK-RKISQWREWIDEKL 209 (209)
T ss_dssp -------CTTC----CCCGGGSSSCEEEEECBTTT-TBCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEEECC-CCHHHHHHHHHHHC
T ss_conf 03388998764135455533476774499986222-01899999999769
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=5.1e-19 Score=107.92 Aligned_cols=151 Identities=16% Similarity=0.126 Sum_probs=102.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCC--C--------------------C-----C-------CCCCCCCCEEEEEEEC
Q ss_conf 257766999918998768998767419--8--------------------3-----2-------3568767137899983
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLG--E--------------------I-----V-------TTIPTIGFNVETVEYK 59 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~~--~--------------------~-----~-------~~~~t~~~~~~~~~~~ 59 (189)
++..++|+++|+.++|||||+.+|+.. . + . +...|++.....+.+.
T Consensus 3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~ 82 (239)
T d1f60a3 3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 82 (239)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCEECCCCCEEEECCC
T ss_conf 89854799994789989999999999818966889999999999836876420000353024322400124420476249
Q ss_pred CEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECCCCCC-----HH-HHHHHHHHHHCCCCCCC-CEEEEEEECCCCCC
Q ss_conf 9799999758998860106521258788999998999541-----99-99999999863888899-84999985899879
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR-----VV-EARDELHRMLNEDELRD-AVLLVFANKQDLPN 132 (189)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-----~~-~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~ 132 (189)
++++.++|+||+.+|..........+|++|+|+|+..... .+ ....-+ .+... .+ +++++++||+|..+
T Consensus 83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~~~~~---~gv~~iiv~iNKmD~~~ 158 (239)
T d1f60a3 83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT---LGVRQLIVAVNKMDSVK 158 (239)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH---TTCCEEEEEEECGGGGT
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHHHH-HHHHH---CCCCEEEEEEECCCCCC
T ss_conf 989999989896888999999999758899999899885414557317699999-99998---49980899998887888
Q ss_pred CCC--HHHH----HHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 899--8689----85619964368635999704678989699
Q 029675 133 AMN--AAEI----TDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 133 ~~~--~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
... ..++ ...+.........+.++++|+..|.|+.+
T Consensus 159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEE
T ss_conf 888999999998999997418998817999988547776552
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.76 E-value=3.5e-19 Score=108.71 Aligned_cols=151 Identities=18% Similarity=0.209 Sum_probs=98.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC---------------------------CC-------CCCCCCCCEEEEEEECCE
Q ss_conf 77669999189987689987674198---------------------------32-------356876713789998397
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE---------------------------IV-------TTIPTIGFNVETVEYKNI 61 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~---------------------------~~-------~~~~t~~~~~~~~~~~~~ 61 (189)
..++|+++|+.++|||||+.+|+... .. ....|.......++..+.
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 81 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCC
T ss_conf 95189999447999999999999985983288999999988751766555420145733441477652421799951881
Q ss_pred EEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECCCCCCHHH---HHHH--HHHHHCCCCCCCCEEEEEEECCCCCCCC-C
Q ss_conf 99999758998860106521258788999998999541999---9999--9998638888998499998589987989-9
Q 029675 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE---ARDE--LHRMLNEDELRDAVLLVFANKQDLPNAM-N 135 (189)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~---~~~~--~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~ 135 (189)
.+.++||||+.+|........+-+|++++|+|+.+...-+. ..+. ...+.... ...+++++.||.|+.... .
T Consensus 82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~~ 159 (224)
T d1jnya3 82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPYD 159 (224)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTTC
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCCCCCC
T ss_conf 2687518984878999999997506579987415575454224442249999999980--99834899980357775311
Q ss_pred H---HHH----HHHHCCCCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 8---689----85619964368635999704678989699
Q 029675 136 A---AEI----TDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 136 ~---~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
. +.+ ...+...........++++||..|.|+.+
T Consensus 160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 7888877999876787618985667099977457888135
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=7.3e-18 Score=102.36 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=95.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CC-CCCCCCE-EEEEEECCEEEEEEECCCCCCCHH---------CHHHHCCCC
Q ss_conf 6999918998768998767419832--35-6876713-789998397999997589988601---------065212587
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFN-VETVEYKNISFTVWDVGGQDKIRP---------LWRHYFQNT 85 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~~~~--~~-~~t~~~~-~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~~~ 85 (189)
.|+++|.+|+|||||+|+|++.... +. ..|.... ..........+..+|++|...... ........+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV 86 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEEEEEEEEECCCCEEEEECCCCCEECCHHHHHHHHHHCCCCCHHHC
T ss_conf 99999799998999999995898634326887137888755505873147604887301102344444321022102114
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 88999998999541999999999986388889984999985899879899868985619964368635999704678989
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
++++++.|..+... ....++..+.. ...|.++++||.|+.... ..+...............++++||++|.|
T Consensus 87 ~~~l~~~d~~~~~~--~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~--~~~~~~~~~~~~~~~~~~~~~vSA~~g~g 158 (179)
T d1egaa1 87 ELVIFVVEGTRWTP--DDEMVLNKLRE----GKAPVILAVNKVDNVQEK--ADLLPHLQFLASQMNFLDIVPISAETGLN 158 (179)
T ss_dssp EEEEEEEETTCCCH--HHHHHHHHHHS----SSSCEEEEEESTTTCCCH--HHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred CEEEEEEECCCCCH--HHHHHHHHHHH----CCCCEEEEEEEEECCCHH--HHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 44679874576622--67899877541----357515555434412102--45666766666423899789982768989
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 699999999998512
Q 029675 166 LYEGLDWLSNNIASK 180 (189)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (189)
++++++.+.+.+.+.
T Consensus 159 i~~L~~~i~~~lpe~ 173 (179)
T d1egaa1 159 VDTIAAIVRKHLPEA 173 (179)
T ss_dssp HHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999748888
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.75 E-value=2.2e-18 Score=104.85 Aligned_cols=160 Identities=17% Similarity=0.200 Sum_probs=101.8
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCC--CC--------------------------------CCCCCCCCEEE
Q ss_conf 975502577669999189987689987674198--32--------------------------------35687671378
Q 029675 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVE 54 (189)
Q Consensus 9 ~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~--~~--------------------------------~~~~t~~~~~~ 54 (189)
+.....++.++|+++|+.++|||||+.+|+... +. ....+......
T Consensus 16 ~~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~ 95 (245)
T d1r5ba3 16 LKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRA 95 (245)
T ss_dssp HHHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CC
T ss_pred HHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 88755998249999952798999999999998499458899999988774277542113443023311246865544422
Q ss_pred EEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECCCCCCH-----H-HHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 9998397999997589988601065212587889999989995419-----9-999999998638888998499998589
Q 029675 55 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV-----V-EARDELHRMLNEDELRDAVLLVFANKQ 128 (189)
Q Consensus 55 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-----~-~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (189)
.+.+.+..+.+.|+||+..|..........+|++++|+|+.+...- . .....+ .++... .-.+++++.||.
T Consensus 96 ~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-~l~~~~--~i~~iiv~iNKm 172 (245)
T d1r5ba3 96 YFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLARTQ--GINHLVVVINKM 172 (245)
T ss_dssp EEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHHT--TCSSEEEEEECT
T ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHH-HHHHHC--CCCEEEEEEECC
T ss_conf 12113310355425555442366652144303004678747776677653320229999-999985--999599999768
Q ss_pred CCCCCCC----HHHHHHHHCCC-----CC-CCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 9879899----86898561996-----43-68635999704678989699999
Q 029675 129 DLPNAMN----AAEITDKLGLH-----SL-RQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 129 Dl~~~~~----~~~~~~~~~~~-----~~-~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
|+..... ..++...+... .. ....++++++||++|+||.++++
T Consensus 173 D~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 173 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHH
T ss_conf 87753121788999999999999998375765688799946667879512100
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2.9e-17 Score=99.48 Aligned_cols=164 Identities=12% Similarity=0.059 Sum_probs=93.6
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCEE-EEEEECCEEEEEEECCCC-CCC---------
Q ss_conf 9755025776699991899876899876741983235---68767137-899983979999975899-886---------
Q 029675 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNV-ETVEYKNISFTVWDVGGQ-DKI--------- 74 (189)
Q Consensus 9 ~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~---~~t~~~~~-~~~~~~~~~~~i~D~~G~-~~~--------- 74 (189)
+.+.|..+.++|+++|.+|+|||||+|++.+.+.... .++..... ......+......+.++. ...
T Consensus 8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T d1puia_ 8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR 87 (188)
T ss_dssp GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCEEECCCEECCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 56799766978999889999899999998589854754566650231110111465420342001221102445444445
Q ss_pred -HHCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCC-CCCCC
Q ss_conf -0106521258788999998999541999999999986388889984999985899879899868985619964-36863
Q 029675 75 -RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-LRQRH 152 (189)
Q Consensus 75 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~ 152 (189)
.............++.+.+...... .....++..... ...++++++||.|+.+..........+.... .....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~ 162 (188)
T d1puia_ 88 ALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 162 (188)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHHEEEEEEEECCCCCCH-HHHHHHHHHHHH----CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 55655654200358998401223312-677788887640----3322201113331158888999999999999860899
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 5999704678989699999999998
Q 029675 153 WYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (189)
..++.+||++|.|++++++.|.+.+
T Consensus 163 ~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 163 VQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8189996799988999999999970
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.68 E-value=1.9e-17 Score=100.31 Aligned_cols=156 Identities=9% Similarity=0.080 Sum_probs=89.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCC-------CCCCCCCEEEEEEE-CCEEEEEEECCCCCCCHHC-----HHH
Q ss_conf 2577669999189987689987674198323-------56876713789998-3979999975899886010-----652
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-------TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL-----WRH 80 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~~~~~~-------~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~-----~~~ 80 (189)
....++|+++|.+|+|||||+|.|.|..... ..+|+. ....+.. ....+.+|||||....... ...
T Consensus 53 ~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~-~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~ 131 (400)
T d1tq4a_ 53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM 131 (400)
T ss_dssp HHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCE-EEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 36771799989999978999999958886777567899988704-45531106897079983798543334499999874
Q ss_pred HCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC---------CCCHHHHHH--------HH
Q ss_conf 1258788999998999541999999999986388889984999985899879---------899868985--------61
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN---------AMNAAEITD--------KL 143 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~---------~~~~~~~~~--------~~ 143 (189)
.+..+|.++++.|.. +......+...+.. .++|+++|.||+|... ....+...+ .+
T Consensus 132 ~~~~~d~~l~~~~~~----~~~~d~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l 204 (400)
T d1tq4a_ 132 KFYEYDFFIIISATR----FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 204 (400)
T ss_dssp TGGGCSEEEEEESSC----CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHCCEEEEEECCCC----CCHHHHHHHHHHHH---CCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 332265999965888----87889999999997---69987999708632101354322011227889999999999999
Q ss_pred CCCCCCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHH
Q ss_conf 9964368635999704678--98969999999999851
Q 029675 144 GLHSLRQRHWYIQSTCATS--GEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~~~~~~ 179 (189)
...... ..+++.+|..+ ..++.++.+.+.+.+-+
T Consensus 205 ~~~~~~--~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 205 RENGIA--EPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp HHTTCS--SCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHCCCC--CCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 874899--897797337764515899999999998399
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=1.1e-15 Score=91.86 Aligned_cols=112 Identities=19% Similarity=0.128 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC--C----------CCCC-------CCCCCCEEEEEEE----------------C
Q ss_conf 57766999918998768998767419--8----------3235-------6876713789998----------------3
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG--E----------IVTT-------IPTIGFNVETVEY----------------K 59 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~--~----------~~~~-------~~t~~~~~~~~~~----------------~ 59 (189)
.+-.+|+++|+.++|||||+.+|+.. . +... ..|+......+.+ +
T Consensus 15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (341)
T d1n0ua2 15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 94 (341)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCCCCCCCCHHCCCCCC
T ss_conf 16748999968888699999999997798663556323224464567756836967878999426765542010023566
Q ss_pred CEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 979999975899886010652125878899999899954199999999998638888998499998589987
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 131 (189)
++.+.++||||+.+|.......++-+|++++|+|+.+.-..+.. ..|..... .+.|+++++||+|..
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~----~~~p~i~viNKiDr~ 161 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG----ERIKPVVVINKVDRA 161 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH-HHHHHHHH----CCCCEEEEEECCCCC
T ss_conf 53799973787388999999887523724999865668204699-99999987----699869998772655
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=2.4e-15 Score=90.25 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=93.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC------CCCC--CCCCCCCCE-------------------EEEEEE---------
Q ss_conf 5776699991899876899876741------9832--356876713-------------------789998---------
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL------GEIV--TTIPTIGFN-------------------VETVEY--------- 58 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~------~~~~--~~~~t~~~~-------------------~~~~~~--------- 58 (189)
.+.++|.+.|+||+|||||+++|.. .++. ..-|+.... .+....
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 98328974389999899999999999975698332203777610006515541367887405654101565553444420
Q ss_pred -------------CCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf -------------3979999975899886010652125878899999899954199999999998638888998499998
Q 029675 59 -------------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (189)
Q Consensus 59 -------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~ 125 (189)
.+..+.+++|.|.-.... .+...+|.+++|.++...+..+.....+.++.. ++|+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~aD---------i~Vv 199 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEVAD---------LIVI 199 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHHCS---------EEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCH---HHHHCCCEEEEEECCCCCHHHHHHCHHHHCCCC---------EEEE
T ss_conf 3320578999886499827875032112102---344035438997368872555542201420155---------7999
Q ss_pred ECCCCCCCCCHH----HHHHHHCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 589987989986----89856199--64368635999704678989699999999998512
Q 029675 126 NKQDLPNAMNAA----EITDKLGL--HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 126 nK~Dl~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (189)
||.|........ ++...+.. ........+++.|||.+|+|++++++.+.+.....
T Consensus 200 NKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l 260 (327)
T d2p67a1 200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTAL 260 (327)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 8622554577899999999986322557777765048998418999899999999999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.57 E-value=2.9e-14 Score=85.00 Aligned_cols=117 Identities=9% Similarity=0.062 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC----CCCCCCCEEEEEEECCEEEEEEECCCCCCCHHC-------HH--HH
Q ss_conf 577669999189987689987674198323----568767137899983979999975899886010-------65--21
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL-------WR--HY 81 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~--~~ 81 (189)
...++|+++|.+|+|||||+|++++..... ...|...........+..+.++||||-.+.... .. ..
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~ 109 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 109 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 78748999899998699999998589841335889760467898898633889997521346775248999999999985
Q ss_pred CCCCCEEEEEEECCCCC-C--HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 25878899999899954-1--9999999999863888899849999858998798
Q 029675 82 FQNTQGLIFVVDSNDRD-R--VVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~-s--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (189)
....+++++|++.+... + -......+...+... .-.+++++.||+|....
T Consensus 110 ~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~~ 162 (257)
T d1h65a_ 110 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPP 162 (257)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCG
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHH--HHHCEEEEEECCCCCCC
T ss_conf 689876999997888778999999999999873265--66388999988644776
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.52 E-value=3.7e-14 Score=84.51 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=98.5
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCC------CC--CCCCC-------------------CCCCEEEEE---------
Q ss_conf 0257766999918998768998767419------83--23568-------------------767137899---------
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIP-------------------TIGFNVETV--------- 56 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~~------~~--~~~~~-------------------t~~~~~~~~--------- 56 (189)
...+.++|.+.|+||+|||||+++|... +. ...-| ..+...+.-
T Consensus 47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~g 126 (323)
T d2qm8a1 47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG 126 (323)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 06981598611799888999999999987636875134434655478775064101337887503440112665345331
Q ss_pred -------------EECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf -------------9839799999758998860106521258788999998999541999999999986388889984999
Q 029675 57 -------------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123 (189)
Q Consensus 57 -------------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iv 123 (189)
+..++.+.++.|.|.-..+.... ..+|.+++|..+...+..+.....+.++. -++
T Consensus 127 g~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~---~~~D~~v~v~~p~~GD~iQ~~k~gilE~a---------Di~ 194 (323)
T d2qm8a1 127 GVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA---DLTDFFLVLMLPGAGDELQGIKKGIFELA---------DMI 194 (323)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH---TTSSEEEEEECSCC------CCTTHHHHC---------SEE
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHH---CCCCEEEEEEECCCHHHHHHHHHHHHHHH---------HEE
T ss_conf 106778999976414899858986323332146653---36654899861432455656323476540---------204
Q ss_pred EEECCCCCCCCCHH-----HHHHHHCCCCC--CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 98589987989986-----89856199643--68635999704678989699999999998512
Q 029675 124 FANKQDLPNAMNAA-----EITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 124 v~nK~Dl~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (189)
++||.|+.+..... ++...+..... .....+++.|||++++|++++++.+.+.....
T Consensus 195 vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~ 258 (323)
T d2qm8a1 195 AVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL 258 (323)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 6754245430689999999999986345554457877369998217998799999999999999
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.46 E-value=1.5e-14 Score=86.34 Aligned_cols=155 Identities=14% Similarity=0.067 Sum_probs=86.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC----C-CC--CCCCCC-------CCEEEE-----------------------------
Q ss_conf 6999918998768998767419----8-32--356876-------713789-----------------------------
Q 029675 19 RILMVGLDAAGKTTILYKLKLG----E-IV--TTIPTI-------GFNVET----------------------------- 55 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~----~-~~--~~~~t~-------~~~~~~----------------------------- 55 (189)
-|+++|++|||||||++++... + .. +..|.. ..+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKF 81 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988438768999667664457886453099998878776764036775122028677668
Q ss_pred --------EEECCEEEEEEECCCCCCCHHCHHH---H--CCCCCEEEEEEECCCCCCHHHHH-HHHHH--HHCCCCCCCC
Q ss_conf --------9983979999975899886010652---1--25878899999899954199999-99999--8638888998
Q 029675 56 --------VEYKNISFTVWDVGGQDKIRPLWRH---Y--FQNTQGLIFVVDSNDRDRVVEAR-DELHR--MLNEDELRDA 119 (189)
Q Consensus 56 --------~~~~~~~~~i~D~~G~~~~~~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~-~~~~~--~~~~~~~~~~ 119 (189)
.......+.+.|+||+......... . ....+.+++++|+......+... ..+.. ...+ -..
T Consensus 82 ~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~ 158 (244)
T d1yrba1 82 NEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGA 158 (244)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTS
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCC
T ss_conf 99999998412565436543665314788999999998632476589996365566750476699999999987---078
Q ss_pred EEEEEEECCCCCCCCCHHHHHHH----------HCCC---------------CCCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 49999858998798998689856----------1996---------------4368635999704678989699999999
Q 029675 120 VLLVFANKQDLPNAMNAAEITDK----------LGLH---------------SLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 120 p~ivv~nK~Dl~~~~~~~~~~~~----------~~~~---------------~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 174 (189)
|.++++||.|+........+... .... .......+++++||++|+|+++++..+.
T Consensus 159 ~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~ 238 (244)
T d1yrba1 159 TTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAY 238 (244)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 74266532014357788899998888999999985336789999999987788637998189987999999999999999
Q ss_pred HH
Q ss_conf 99
Q 029675 175 NN 176 (189)
Q Consensus 175 ~~ 176 (189)
+.
T Consensus 239 e~ 240 (244)
T d1yrba1 239 EH 240 (244)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.16 E-value=1.9e-10 Score=66.64 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=67.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCC---------------------------------------------
Q ss_conf 66999918998768998767419832--3568767---------------------------------------------
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--------------------------------------------- 50 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~~~~--~~~~t~~--------------------------------------------- 50 (189)
-+|+|+|..++|||||+|.|++..+. ...+++.
T Consensus 25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (306)
T d1jwyb_ 25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (306)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 85999818989799999999689978878975406888999945776667653065667762688622378999999999
Q ss_pred ---------------CEEEEEEEC-CEEEEEEECCCCCCC-------------HHCHHHHCCCCCEEEEEEECC-CCCCH
Q ss_conf ---------------137899983-979999975899886-------------010652125878899999899-95419
Q 029675 51 ---------------FNVETVEYK-NISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSN-DRDRV 100 (189)
Q Consensus 51 ---------------~~~~~~~~~-~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~-~~~s~ 100 (189)
.....+... -..+.++|+||-... ..+...+..+++.+++++... ....-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~ 184 (306)
T d1jwyb_ 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184 (306)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred HHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99874277776566506998247898880686588864436688403589999999999982777516876325631003
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 999999999863888899849999858998798
Q 029675 101 VEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 133 (189)
.....+. ..+.. ....+++|.||+|..+.
T Consensus 185 ~~~~~~~-~~~~~---~~~r~i~Vitk~D~~~~ 213 (306)
T d1jwyb_ 185 SDALQLA-KEVDP---EGKRTIGVITKLDLMDK 213 (306)
T ss_dssp CSHHHHH-HHHCS---SCSSEEEEEECTTSSCS
T ss_pred CHHHHHH-HHHCC---CCCEEEEEEECCCCCCC
T ss_conf 4999999-97386---78858999820444531
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.16 E-value=6.9e-11 Score=68.72 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=51.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-CCCC--CC----CCEEEEEE--------------------ECCEEEEEEECCC
Q ss_conf 66999918998768998767419832-3568--76----71378999--------------------8397999997589
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TI----GFNVETVE--------------------YKNISFTVWDVGG 70 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~~~~-~~~~--t~----~~~~~~~~--------------------~~~~~~~i~D~~G 70 (189)
.+|+++|.|++|||||+|.+++.... ...| |. |+.....+ .....+.++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CCEEEECCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 91768899999899999999788970326997755586262327787046564003686533234555665079998897
Q ss_pred CC-------CCHHCHHHHCCCCCEEEEEEECCC
Q ss_conf 98-------860106521258788999998999
Q 029675 71 QD-------KIRPLWRHYFQNTQGLIFVVDSND 96 (189)
Q Consensus 71 ~~-------~~~~~~~~~~~~~d~~i~v~d~~~ 96 (189)
-- .........++.+|++++|+|..+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred CCCCHHCCCCHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 444300010058999974305527899851556
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.15 E-value=1.7e-10 Score=66.85 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=60.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCC--CCCCCCEEEEEEEC-----------------CEEEEEEECCCCC
Q ss_conf 25776699991899876899876741983--235--68767137899983-----------------9799999758998
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI--VTT--IPTIGFNVETVEYK-----------------NISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~~~~--~~~--~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~ 72 (189)
.+..++|.++|.|++|||||++.+++... ... ..|++.+...+..+ ...+.+.|.||.-
T Consensus 7 ~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv 86 (296)
T d1ni3a1 7 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 86 (296)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCCEECCCCEEEECCCCC
T ss_conf 78873799978999989999999977898774789966703876899606634001431056774442543144135445
Q ss_pred -------CCHHCHHHHCCCCCEEEEEEECCC
Q ss_conf -------860106521258788999998999
Q 029675 73 -------KIRPLWRHYFQNTQGLIFVVDSND 96 (189)
Q Consensus 73 -------~~~~~~~~~~~~~d~~i~v~d~~~ 96 (189)
+........++.+|+++.|+|..+
T Consensus 87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCCCCCCCCHHHHHHHHHCCCEEEEEEECCC
T ss_conf 6640135508999998612462699985147
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=4.7e-10 Score=64.70 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=67.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-C-CCCCCCCCE-E-----------------------------------------
Q ss_conf 6699991899876899876741983-2-356876713-7-----------------------------------------
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIGFN-V----------------------------------------- 53 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~~~-~-~~~~t~~~~-~----------------------------------------- 53 (189)
-+|+|+|..++|||||+|.|++..+ + ...+++... .
T Consensus 27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (299)
T d2akab1 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEECCHHHHHHHHHHHHHHHHCC
T ss_conf 86999768989799999999689868878974035788999723565226898689971478899999999999885077
Q ss_pred ----------EEEEEC-CEEEEEEECCCCCCC-------------HHCHHHHCCCCCEEEEEE-ECCCCCCHHHHHHHHH
Q ss_conf ----------899983-979999975899886-------------010652125878899999-8999541999999999
Q 029675 54 ----------ETVEYK-NISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVV-DSNDRDRVVEARDELH 108 (189)
Q Consensus 54 ----------~~~~~~-~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~ 108 (189)
..+... ...+.++|+||.... ..+...+....+.+++++ +.....+-.....+..
T Consensus 107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~ 186 (299)
T d2akab1 107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK 186 (299)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 76767760799974799887257716874334667763147999999999986275603566403454211259999999
Q ss_pred HHHCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 98638888998499998589987989
Q 029675 109 RMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 109 ~~~~~~~~~~~p~ivv~nK~Dl~~~~ 134 (189)
. +.. ...++++|.||.|..+..
T Consensus 187 ~-~~~---~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 187 E-VDP---QGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp H-HCT---TCSSEEEEEECGGGSCTT
T ss_pred H-HCC---CCCCEEEEEECCCCCCCH
T ss_conf 7-386---778136677026655313
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.08 E-value=1.4e-10 Score=67.22 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=55.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CC--CCCCCCEEEEEEEC-----------------CEEEEEEECCCCC----
Q ss_conf 766999918998768998767419832-35--68767137899983-----------------9799999758998----
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK-----------------NISFTVWDVGGQD---- 72 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~---- 72 (189)
.++|.++|.|++|||||++++++.... .. ..|...+...+..+ ...+.+.|.||--
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 83488889999988999999977997413699888778458996435868989774388845521689997263178853
Q ss_pred ---CCHHCHHHHCCCCCEEEEEEECC
Q ss_conf ---86010652125878899999899
Q 029675 73 ---KIRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 73 ---~~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
.........++.+|+++.|+|..
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEECC
T ss_conf 57876589999998506258885146
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.96 E-value=2.6e-10 Score=65.90 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=42.8
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC--EEEEEEECCEEEEEEECCCCC
Q ss_conf 55025776699991899876899876741983235687671--378999839799999758998
Q 029675 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 11 ~~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~ 72 (189)
.....+.++++++|.||+|||||+|++.+.......++.|. ....+.. +-.+.++||||-.
T Consensus 106 ~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~-~~~~~l~DTPGi~ 168 (273)
T d1puja_ 106 KGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 168 (273)
T ss_dssp TTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEC-CCCEEEECCCCCC
T ss_conf 06777752789986675443555425426615887895322455348987-9975995389744
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.41 E-value=1.6e-07 Score=52.45 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=16.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7669999189987689987674198
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
....+++|.+|+|||||+|.|.++.
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 9808997889877888877305355
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.34 E-value=1.6e-07 Score=52.49 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=64.6
Q ss_pred CHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 06521258788999998999541999999999986388889984999985899879899868985619964368635999
Q 029675 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (189)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
.....+..+|+++.|+|+..|-+..+ ..+..++. ++|.++|+||+|+.+.....++...+.... ..++
T Consensus 8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~-----~~~i 75 (273)
T d1puja_ 8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFENQG-----IRSL 75 (273)
T ss_dssp HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHHTTT-----CCEE
T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCC--HHHHHHHC-----CCCEEEEEECCCCCCHHHHHHHHHHHHHCC-----CCCC
T ss_conf 99999976999999988889989889--89999986-----998599998736886677999999998469-----8651
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 704678989699999999998512
Q 029675 157 STCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (189)
.+|+.++.+.......+.+.+.+.
T Consensus 76 ~isa~~~~~~~~~~~~~~~~l~~~ 99 (273)
T d1puja_ 76 SINSVNGQGLNQIVPASKEILQEK 99 (273)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 221125777532310333222211
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=3.2e-06 Score=46.20 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=67.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-------CCCCCCCE----------EEEEEE-----------------------
Q ss_conf 69999189987689987674198323-------56876713----------789998-----------------------
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVT-------TIPTIGFN----------VETVEY----------------------- 58 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~~~~~-------~~~t~~~~----------~~~~~~----------------------- 58 (189)
-.++.|--|||||||+++++...-.. .....+++ ...+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~~~~~~ 84 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLD 84 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEECCCCCEECCCHHHHHHHHHHHHHHH
T ss_conf 89986488899999999998567898379997366411223343025665248843884000000367777889999986
Q ss_pred ---CCEEEEEEECCCCCCCHHCHHHH--------CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEC
Q ss_conf ---39799999758998860106521--------2587889999989995419999999999863888899849999858
Q 029675 59 ---KNISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (189)
Q Consensus 59 ---~~~~~~i~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 127 (189)
......++.+.|..........+ ....+.++.|+|+............+...+... =++++||
T Consensus 85 ~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A------D~ivlNK 158 (222)
T d1nija1 85 KGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTK 158 (222)
T ss_dssp HTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTC------SEEEEEC
T ss_pred HCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCC
T ss_conf 0467765367862242104689999885201444211134021333554444433467899999868------8302446
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 9987989986898561996436863599970467898969999
Q 029675 128 QDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 128 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
+|+.++. +.+.+..... .+...+++++ .....++.++
T Consensus 159 ~Dl~~~~--~~~~~~l~~l---NP~a~Ii~~~-~g~v~~~~ll 195 (222)
T d1nija1 159 TDVAGEA--EKLHERLARI---NARAPVYTVT-HGDIDLGLLF 195 (222)
T ss_dssp TTTCSCT--HHHHHHHHHH---CSSSCEEECC-SSCCCGGGGS
T ss_pred CCCCCHH--HHHHHHHHHH---HCCCEEEEEE-CCCCCHHHHH
T ss_conf 4553379--9999999997---0798499832-7856899950
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.26 E-value=3.4e-07 Score=50.87 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=58.3
Q ss_pred HCCCCCEEEEEEECCCCC-CHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 125878899999899954-1999999999986388889984999985899879899868985619964368635999704
Q 029675 81 YFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
...+.|.+++|+++.+|+ +...+..++..... .+++.++++||+|+.+......+...... ....+.++.+|
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~---~~~~~~v~~vS 79 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEI---YSGLYPIVKTS 79 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH---HTTTSCEEECC
T ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCCCCCHHHHHHHHHHHCC---CCCCEEEEEEC
T ss_conf 756688899998678999998999999999998----69977999967666787999999975403---46613688841
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 678989699999999
Q 029675 160 ATSGEGLYEGLDWLS 174 (189)
Q Consensus 160 a~~~~~i~~~~~~i~ 174 (189)
++++.|++++...+.
T Consensus 80 a~~~~g~~~L~~~l~ 94 (225)
T d1u0la2 80 AKTGMGIEELKEYLK 94 (225)
T ss_dssp TTTCTTHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHC
T ss_conf 544155766999956
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.14 E-value=3.2e-07 Score=51.02 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=35.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC-----------CCCCCCCEEEEEEECCEEEEEEECCCCCCCH
Q ss_conf 77669999189987689987674198323-----------5687671378999839799999758998860
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (189)
+.-..+++|++|+|||||+|+|.++.... ...|+.... +...+ =.++||||-..+.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l--~~~~g--g~iiDTPG~r~~~ 162 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTSG--GLVADTPGFSSLE 162 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEETT--EEEESSCSCSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCCCCCCEEEEEEEE--EECCC--CEEEECCCCCCCC
T ss_conf 3564999877873487898751517676403555335897124434788--86279--7899787666665
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.11 E-value=1.2e-05 Score=43.36 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=68.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCC------CC-----CCCC-----------CCCCEEEEE---------------
Q ss_conf 2577669999189987689987674198------32-----3568-----------767137899---------------
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------IV-----TTIP-----------TIGFNVETV--------------- 56 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~~~------~~-----~~~~-----------t~~~~~~~~--------------- 56 (189)
+.+..-|+++|++|+||||.+-+|.... .. ++.+ ..++.+...
T Consensus 3 ~~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~ 82 (207)
T d1okkd2 3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQ 82 (207)
T ss_dssp CCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 99977999989999988999999999999779907999813666540266764054568238961677427889999899
Q ss_pred --EECCEEEEEEECCCCCCCHHCH----HHHC--------CCCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf --9839799999758998860106----5212--------58788999998999-5419999999999863888899849
Q 029675 57 --EYKNISFTVWDVGGQDKIRPLW----RHYF--------QNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRDAVL 121 (189)
Q Consensus 57 --~~~~~~~~i~D~~G~~~~~~~~----~~~~--------~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ 121 (189)
...+..+.++||+|........ ..+. ...+-.++|+|... .+....+...+..+ . +-
T Consensus 83 ~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~-------~~ 154 (207)
T d1okkd2 83 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-G-------LT 154 (207)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-C-------CS
T ss_pred HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCC-C-------CC
T ss_conf 999879999971752223112778888777777765325678735999962004716789999750213-8-------86
Q ss_pred EEEEECCCCCCCC-CHHHHHHHHCCC
Q ss_conf 9998589987989-986898561996
Q 029675 122 LVFANKQDLPNAM-NAAEITDKLGLH 146 (189)
Q Consensus 122 ivv~nK~Dl~~~~-~~~~~~~~~~~~ 146 (189)
-+++||.|..... ..-.+....+..
T Consensus 155 ~lI~TKlDet~~~G~~l~~~~~~~~P 180 (207)
T d1okkd2 155 GVIVTKLDGTAKGGVLIPIVRTLKVP 180 (207)
T ss_dssp EEEEECTTSSCCCTTHHHHHHHHCCC
T ss_pred EEEEECCCCCCCCCHHHHHHHHHCCC
T ss_conf 48983368888734999999998979
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=4.2e-06 Score=45.63 Aligned_cols=128 Identities=18% Similarity=0.135 Sum_probs=67.7
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHCCCCC-----------CCCC-----------CCCCEEEEEE------------
Q ss_conf 50257766999918998768998767419832-----------3568-----------7671378999------------
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-----------TTIP-----------TIGFNVETVE------------ 57 (189)
Q Consensus 12 ~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~-----------~~~~-----------t~~~~~~~~~------------ 57 (189)
.++.+..-|+++|++|+||||.+-+|...-.. ++.+ ..+..+....
T Consensus 6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~ 85 (213)
T d1vmaa2 6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 85 (213)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 79999989999899999889999999999997799069996013342046788877643276410367777689987887
Q ss_pred -----ECCEEEEEEECCCCCCCHHCHHH----H---C-----CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCE
Q ss_conf -----83979999975899886010652----1---2-----58788999998999541999999999986388889984
Q 029675 58 -----YKNISFTVWDVGGQDKIRPLWRH----Y---F-----QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120 (189)
Q Consensus 58 -----~~~~~~~i~D~~G~~~~~~~~~~----~---~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 120 (189)
..+..+.++||+|.......... + . ...+-.++|++.... ...+.+........ .+
T Consensus 86 ~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~ 158 (213)
T d1vmaa2 86 VAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-----NV 158 (213)
T ss_dssp HHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-----CC
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC--CCHHHHHHHHCCCC-----CC
T ss_conf 899987699989982455330168888998888766420256665025786212348--43355656540122-----78
Q ss_pred EEEEEECCCCCCCC-CHHHHHHHHCCC
Q ss_conf 99998589987989-986898561996
Q 029675 121 LLVFANKQDLPNAM-NAAEITDKLGLH 146 (189)
Q Consensus 121 ~ivv~nK~Dl~~~~-~~~~~~~~~~~~ 146 (189)
--+++||.|..... ..-.+....++.
T Consensus 159 ~~lI~TKlDe~~~~G~~l~~~~~~~~P 185 (213)
T d1vmaa2 159 TGIILTKLDGTAKGGITLAIARELGIP 185 (213)
T ss_dssp CEEEEECGGGCSCTTHHHHHHHHHCCC
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHCCC
T ss_conf 658984246787623999999997979
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.01 E-value=3.8e-07 Score=50.67 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=56.1
Q ss_pred HCCCCCEEEEEEECCCCC-CHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 125878899999899954-1999999999986388889984999985899879899868985619964368635999704
Q 029675 81 YFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
...+.|.+++|+++.+|+ +...+..++..... .+++.++++||+|+.+..+.++....+.. .....++.++.+|
T Consensus 7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~-~y~~~g~~v~~~S 81 (231)
T d1t9ha2 7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAE-DYRNIGYDVYLTS 81 (231)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHH-HHHHHTCCEEECC
T ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCCCCCCHHHHHHHHHHHH-HHHHCCCCCEEEE
T ss_conf 756568899998788999998999999999998----69977999956011364888889999999-9764455504662
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 67898969999999
Q 029675 160 ATSGEGLYEGLDWL 173 (189)
Q Consensus 160 a~~~~~i~~~~~~i 173 (189)
++++.|++++...+
T Consensus 82 a~~~~gl~~L~~~l 95 (231)
T d1t9ha2 82 SKDQDSLADIIPHF 95 (231)
T ss_dssp HHHHTTCTTTGGGG
T ss_pred CCCHHHHHHHHHHH
T ss_conf 48716799999864
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.97 E-value=7.3e-06 Score=44.46 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=61.0
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHCCC------CC-----CCCC-----------CCCCEEEEE-------------
Q ss_conf 502577669999189987689987674198------32-----3568-----------767137899-------------
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGE------IV-----TTIP-----------TIGFNVETV------------- 56 (189)
Q Consensus 12 ~~~~~~~~i~iiG~~~~GKssli~~l~~~~------~~-----~~~~-----------t~~~~~~~~------------- 56 (189)
.+.+...-|+++|++|+||||.+-+|...- .. ++.. ..++.+...
T Consensus 7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a 86 (211)
T d1j8yf2 7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG 86 (211)
T ss_dssp SCSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHH
T ss_conf 89999989999899999989999999999997799369997202355156789874014684223024410244789999
Q ss_pred ----EECCEEEEEEECCCCCCCHH--C----HHHH--CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf ----98397999997589988601--0----6521--2587889999989995419999999999863888899849999
Q 029675 57 ----EYKNISFTVWDVGGQDKIRP--L----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (189)
Q Consensus 57 ----~~~~~~~~i~D~~G~~~~~~--~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (189)
...+..+.++||+|...+.. . ...+ ....+-.++|++...... ........... .+. --++
T Consensus 87 ~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~----~~~-~~lI 159 (211)
T d1j8yf2 87 VEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQA----SKI-GTII 159 (211)
T ss_dssp HHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHH----CTT-EEEE
T ss_pred HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC--HHHHHHHHHCC----CCC-CEEE
T ss_conf 9874026773699853776763136678999999986259766899984356840--67787665303----675-5378
Q ss_pred EECCCCCCC
Q ss_conf 858998798
Q 029675 125 ANKQDLPNA 133 (189)
Q Consensus 125 ~nK~Dl~~~ 133 (189)
.||.|....
T Consensus 160 ~TKlDet~~ 168 (211)
T d1j8yf2 160 ITKMDGTAK 168 (211)
T ss_dssp EECTTSCSC
T ss_pred EECCCCCCC
T ss_conf 860368886
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.97 E-value=5.6e-06 Score=45.00 Aligned_cols=124 Identities=21% Similarity=0.217 Sum_probs=64.9
Q ss_pred CCCCE-EEEECCCCCCHHHHHHHHHCC------CCC-----CCCC-----------CCCCEEEEEE--------------
Q ss_conf 57766-999918998768998767419------832-----3568-----------7671378999--------------
Q 029675 15 KKEMR-ILMVGLDAAGKTTILYKLKLG------EIV-----TTIP-----------TIGFNVETVE-------------- 57 (189)
Q Consensus 15 ~~~~~-i~iiG~~~~GKssli~~l~~~------~~~-----~~~~-----------t~~~~~~~~~-------------- 57 (189)
.+.-+ |+++|++|+||||.+-+|... +.. ++.+ ..++.+....
T Consensus 7 ~~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~ 86 (207)
T d1ls1a2 7 LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 86 (207)
T ss_dssp CCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 89986899989999988999999999999779927999544346408888999998628863111244203678888988
Q ss_pred ---ECCEEEEEEECCCCCCCHHCHHHH------CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf ---839799999758998860106521------25878899999899954199999999998638888998499998589
Q 029675 58 ---YKNISFTVWDVGGQDKIRPLWRHY------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (189)
Q Consensus 58 ---~~~~~~~i~D~~G~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (189)
..+..+.++||+|........... ...++-.++|.+......-......+...+. +-=+++||.
T Consensus 87 ~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~-------~~~~I~TKl 159 (207)
T d1ls1a2 87 KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------VTGLVLTKL 159 (207)
T ss_dssp HHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC-------CCEEEEECG
T ss_pred HHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCC-------CCEEEEEEC
T ss_conf 8763367640334544200003668899999863187369998434556168999999986479-------970588603
Q ss_pred CCCCCC-CHHHHHHHHCC
Q ss_conf 987989-98689856199
Q 029675 129 DLPNAM-NAAEITDKLGL 145 (189)
Q Consensus 129 Dl~~~~-~~~~~~~~~~~ 145 (189)
|..... ..-.+....+.
T Consensus 160 De~~~~G~~l~~~~~~~~ 177 (207)
T d1ls1a2 160 DGDARGGAALSARHVTGK 177 (207)
T ss_dssp GGCSSCHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHCC
T ss_conf 765653189999999798
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=2e-06 Score=47.20 Aligned_cols=125 Identities=19% Similarity=0.168 Sum_probs=64.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC-----C------CCC-----------CCCCCEEEEEE---------------
Q ss_conf 5776699991899876899876741983-----2------356-----------87671378999---------------
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-----V------TTI-----------PTIGFNVETVE--------------- 57 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~-----~------~~~-----------~t~~~~~~~~~--------------- 57 (189)
.+..-|+++|++|+||||.+-+|...-. . ++. ...++.+....
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99979999899999989999999999997799479982321366612045554343388621135687799999999999
Q ss_pred --ECCEEEEEEECCCCCCCHHCH-------HHHCC-----CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf --839799999758998860106-------52125-----8788999998999541999999999986388889984999
Q 029675 58 --YKNISFTVWDVGGQDKIRPLW-------RHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123 (189)
Q Consensus 58 --~~~~~~~i~D~~G~~~~~~~~-------~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iv 123 (189)
..+..+.++||+|........ ....+ ..+-.++|.|.... .....+........ .+--+
T Consensus 87 a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~~~l 159 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV-----GLTGI 159 (211)
T ss_dssp HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHS-----CCCEE
T ss_pred HHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCC--CCHHHHHHHHHHCC-----CCCEE
T ss_conf 987699889965688763207789999999999853046686001220012357--63377876442101-----78648
Q ss_pred EEECCCCCCCC-CHHHHHHHHCCC
Q ss_conf 98589987989-986898561996
Q 029675 124 FANKQDLPNAM-NAAEITDKLGLH 146 (189)
Q Consensus 124 v~nK~Dl~~~~-~~~~~~~~~~~~ 146 (189)
++||.|..... ..-.+....++.
T Consensus 160 IlTKlDe~~~~G~~l~~~~~~~~P 183 (211)
T d2qy9a2 160 TLTKLDGTAKGGVIFSVADQFGIP 183 (211)
T ss_dssp EEECCTTCTTTTHHHHHHHHHCCC
T ss_pred EEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 996127888720999999998979
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=0.00036 Score=36.33 Aligned_cols=89 Identities=13% Similarity=0.180 Sum_probs=46.6
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCH---HHH
Q ss_conf 89999755025776699991899876899876741983235687671378999839799999758998860106---521
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW---RHY 81 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---~~~ 81 (189)
+.++..-+..+.+-+++++|+||+|||++++.+...-.....|..-.....+.... .-.+-.+.+...++... ...
T Consensus 27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~-~~liag~~~~g~~e~r~~~i~~~ 105 (268)
T d1r6bx2 27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI-GSLLAGTKYRGDFEKRFKALLKQ 105 (268)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC-C---CCCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE-CHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999547668967988898867799999999998178450003541278640-56750676300589999999998
Q ss_pred CCCCCEEEEEEEC
Q ss_conf 2587889999989
Q 029675 82 FQNTQGLIFVVDS 94 (189)
Q Consensus 82 ~~~~d~~i~v~d~ 94 (189)
+...+.+|+++|-
T Consensus 106 ~~~~~~iIlfiDe 118 (268)
T d1r6bx2 106 LEQDTNSILFIDE 118 (268)
T ss_dssp HSSSSCEEEEETT
T ss_pred HHCCCCCEEEECC
T ss_conf 6126784688433
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.64 E-value=1.4e-05 Score=43.16 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 66999918998768998767419
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.||+++|++|+|||||+..+++.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHC
T ss_conf 98999989993899999999814
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.00012 Score=38.57 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=52.6
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCCCCC-C-----CCCCCCCEEEEEEE---CCEEEEEEECCCCCCCHH-------
Q ss_conf 0257766999918998768998767419832-3-----56876713789998---397999997589988601-------
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-T-----TIPTIGFNVETVEY---KNISFTVWDVGGQDKIRP------- 76 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~~~~~-~-----~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~------- 76 (189)
...+..-|.++|+.++|||+|+|.+.+..+. . ...|.|+-.+.... ....+.++||.|......
T Consensus 28 ~~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~ 107 (277)
T d1f5na2 28 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 107 (277)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCHHHH
T ss_conf 79987999988999997999999980998787647877777776589985415788746999824543454446504579
Q ss_pred -CHHHHCCCCCEEEEEEECC
Q ss_conf -0652125878899999899
Q 029675 77 -LWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 77 -~~~~~~~~~d~~i~v~d~~ 95 (189)
+.....--++.+||-..-.
T Consensus 108 ~i~~l~~llSs~~i~N~~~~ 127 (277)
T d1f5na2 108 WIFALAVLLSSTFVYNSIGT 127 (277)
T ss_dssp HHHHHHHHHCSEEEEEEESC
T ss_pred HHHHHHHHHHCEEEEECCCC
T ss_conf 99999999728799932155
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.52 E-value=3e-05 Score=41.47 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=24.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 0257766999918998768998767419
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.+.+-++|+++|+|||||||+...|...
T Consensus 2 ~~~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 2 ASARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CSSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9776216999889999879999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.51 E-value=2.1e-05 Score=42.29 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
-..+|++.|++|+|||||++.|...
T Consensus 6 ~~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 6 FAKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6328999899999899999999998
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.42 E-value=5.1e-05 Score=40.39 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57766999918998768998767419
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.+..+|++.|++|+||||+.+.|...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 99888999828999889999999998
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.41 E-value=4.5e-05 Score=40.68 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 776699991899876899876741
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
++.+|+++|+||+||||+...|..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 972999988999998999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.37 E-value=5.8e-05 Score=40.11 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 776699991899876899876741
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
+.++|+++|+||+||||....|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 963899989999988999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.36 E-value=4.5e-05 Score=40.64 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 76699991899876899876741
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~ 39 (189)
-.+|+++|+||+||||+.+.|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 89798989999998999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.34 E-value=6.4e-05 Score=39.91 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=22.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 25776699991899876899876741
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
..+...|+++|+|||||||+...|..
T Consensus 3 ~~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 3 KSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 88994899989999988999999999
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=5.5e-05 Score=40.25 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699991899876899876741
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~ 39 (189)
-++++|.+|||||||++++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899989999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.29 E-value=7.3e-05 Score=39.65 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6699991899876899876741
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~ 39 (189)
.+|+++|+|||||||+...|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 9899988999998999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.25 E-value=7.1e-05 Score=39.71 Aligned_cols=48 Identities=27% Similarity=0.248 Sum_probs=28.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCC
Q ss_conf 99991899876899876741983235687671378999839799999758998
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 20 i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 72 (189)
+.++|.+|||||||+.+++..- ...+..+..+......+...+..|.+
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L-----~~~g~~v~vik~d~~~~~~~~~~~~d 51 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAA-----VREGWRVGTVKHHGHGGEPARPEGVD 51 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-----HHTTCCEEEEECCC------------
T ss_pred EEEEECCCCCHHHHHHHHHHHH-----HHCCCEEEEEEECCCCCCCCHHHCCC
T ss_conf 9998099998999999999999-----86798379998316766553001242
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=0.00018 Score=37.73 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=31.7
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 8999975502577669999189987689987674198323
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT 44 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~ 44 (189)
+.++..-+..+++-+++++|+||+|||++++.+...-...
T Consensus 31 i~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~ 70 (195)
T d1jbka_ 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIING 70 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999953588873998358754479999999999808
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.21 E-value=1e-04 Score=38.99 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 66999918998768998767419
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.+|+++|+|||||||+...|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98999889999879999999998
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.20 E-value=0.0001 Score=38.90 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 66999918998768998767419
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~ 40 (189)
++|+++|+||+||||+...|...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98999889999979999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.19 E-value=0.00012 Score=38.64 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=23.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 025776699991899876899876741
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
...+..-|+++|.|||||||+..++..
T Consensus 10 ~~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 10 LSPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 799998999989999989999999997
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.16 E-value=0.00013 Score=38.40 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 766999918998768998767419
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.++|+++|+|||||||+...|...
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 569999899999989999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00013 Score=38.42 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6699991899876899876741
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~ 39 (189)
.+|+++|+|||||||....|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 9899987999998999999999
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.12 E-value=0.00022 Score=37.32 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=30.8
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 8999975502577669999189987689987674198323
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT 44 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~ 44 (189)
+.++..-+..+.+-+++++|+||+|||++++.|...-...
T Consensus 31 i~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~ 70 (387)
T d1qvra2 31 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKG 70 (387)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999824889997687999988999999999999808
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.11 E-value=0.0002 Score=37.55 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577669999189987689987674198
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
+...+|+++|++|+|||||++.++...
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 837888999403566257899986530
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.09 E-value=0.00013 Score=38.37 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999918998768998767419
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~ 40 (189)
-|++.|+||+||||+...|...
T Consensus 4 lIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999999999999995
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.03 E-value=0.00017 Score=37.87 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999918998768998767419
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~ 40 (189)
-|++.|++|+||||+...|...
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899999989999999998
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00019 Score=37.63 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577669999189987689987674198
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
.+.=.++++|+.|+|||||++.+.+-.
T Consensus 27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 27 KQGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 499999999999998999999997357
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.01 E-value=0.0002 Score=37.57 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
...-|++.|+||+|||++...+.+.
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9979998897998899999999998
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00026 Score=36.95 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 999755025776699991899876899876741
Q 029675 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 7 ~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
.++.....+..+-|++.|++++|||||.+.|..
T Consensus 70 ~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 70 QFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp HHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 985344789988999968999987689999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.00 E-value=0.00022 Score=37.35 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=21.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 25776699991899876899876741
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
+.+.+.|.++|.+|+||||+...|..
T Consensus 3 ~~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 3 ATQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99976999889999999999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.99 E-value=0.00021 Score=37.44 Aligned_cols=104 Identities=18% Similarity=0.139 Sum_probs=49.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEE--------EECCCCCCCH-----------HC
Q ss_conf 7669999189987689987674198323568767137899983979999--------9758998860-----------10
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV--------WDVGGQDKIR-----------PL 77 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i--------~D~~G~~~~~-----------~~ 77 (189)
+.-|+++|.||+||||+.++|....-.. +.....++.+.+.-.+ .+.++..... ..
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l~~~-----~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYLNFI-----GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND 76 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-----CCCCEEECCCCEEHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9899998999999999999999999746-----99973974530113230454332112222200014687888999999
Q ss_pred HHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 65212587889999989995419999999999863888899849999858998
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 130 (189)
....+...++.++++|..++. ...+..+..+... ...+++++.++++.
T Consensus 77 ~~~~~~~~~~~~vi~d~~~~~--~~~r~~~~~~~~~---~~~~~~~~~~~~~~ 124 (213)
T d1bifa1 77 VRKFLSEEGGHVAVFDATNTT--RERRAMIFNFGEQ---NGYKTFFVESICVD 124 (213)
T ss_dssp HHHHHHTTCCSEEEEESCCCS--HHHHHHHHHHHHH---HTCEEEEEEECCCC
T ss_pred HHHHHHHCCCCEEEEECCCCC--HHHHHHHHHHHHH---CCCEEEEEEEECCH
T ss_conf 999998618988986067764--8999989999875---49807998850367
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.98 E-value=0.00035 Score=36.36 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=25.4
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9999755025776699991899876899876741
Q 029675 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 6 ~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
+.+++ ..+..++-|++.|++|||||||.+.|..
T Consensus 12 ~~~~~-~~~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 12 KTILA-IKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp HHHHT-SCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHH-CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99985-2679988999789887899999999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.94 E-value=0.00024 Score=37.14 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999999985999999986216
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.91 E-value=0.00028 Score=36.85 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999899982999999995797
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=96.89 E-value=0.00028 Score=36.83 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999999999997999999999960
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.00032 Score=36.52 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99899999999984999999986143
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.85 E-value=0.00027 Score=36.86 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699991899876899876741
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~ 39 (189)
+|+++|.+|+||||+...+..
T Consensus 3 ~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 489988999988999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.00028 Score=36.79 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6699991899876899876741
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~ 39 (189)
.+|.+.|++|+|||||+..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 6999988999719999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.00033 Score=36.50 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 76699991899876899876741
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~ 39 (189)
+..|+++|+|||||||....|..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 93999979999998999999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.84 E-value=0.0029 Score=31.91 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCC-C--CCCCCCCEEEEEEECCE
Q ss_conf 01899997550257766999918998768998767419832-3--56876713789998397
Q 029675 3 LTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI 61 (189)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~ 61 (189)
..+.+.+.....++..-|.+.|+-|+|||+|+..++..--. . ..||... ..++.....
T Consensus 19 ~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l-~~~Y~~~~~ 79 (158)
T d1htwa_ 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL-VEEYNIAGK 79 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC-EEEEEETTE
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEE-EEEECCCCC
T ss_conf 9999998751579982999966877658899999876422346667875378-876305785
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00036 Score=36.30 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 66999918998768998767419
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~ 40 (189)
-.|+++|++|+||||+...|...
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 74999899999999999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.81 E-value=0.00033 Score=36.47 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999918998768998767419
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~iiG~~~~GKssli~~l~~~ 40 (189)
|+++|++|+||+||++.|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999989999999974
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.81 E-value=0.00033 Score=36.49 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=18.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6699991899876899876741
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~ 39 (189)
--|++.|.+|+||||+++.|..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 8899989999898999999999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.81 E-value=0.00033 Score=36.47 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
+.=.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCCCHHHHHCCCCC
T ss_conf 99799998899998216557506887
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.79 E-value=0.00047 Score=35.76 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5776699991899876899876741
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
++.+.|++-|++||||||....|..
T Consensus 1 Mk~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 1 MKTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9965999789998798999999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.77 E-value=0.00031 Score=36.64 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577669999189987689987674198
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
.+.=.++++|+.|+|||||++.+.+-.
T Consensus 42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 42 EKGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 399899998899980999999997127
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.00039 Score=36.14 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
+.=.++++|+.|||||||++.+.+-.
T Consensus 25 ~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99899999899982999999996587
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.75 E-value=0.00038 Score=36.20 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699991899876899876741
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~ 39 (189)
+|+++|++|+||||+...+..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 399989999988999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.73 E-value=0.00041 Score=36.00 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 66999918998768998767419
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.-|+++|++|+||+|+++.|...
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 49999899999999999999845
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.73 E-value=0.00042 Score=35.97 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69999189987689987674198
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~~ 41 (189)
-++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999799980999999997399
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.71 E-value=0.00084 Score=34.51 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=71.6
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCC------CHHC--HH
Q ss_conf 997550257766999918998768998767419832356876713789998397999997589988------6010--65
Q 029675 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK------IRPL--WR 79 (189)
Q Consensus 8 ~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~--~~ 79 (189)
...+....+.+-|.+.|.+|+|||||.+.|......... .....++.+..+-.+..-.|... .... ..
T Consensus 15 ~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~----~~~~~ldgD~iR~~l~~~l~ys~~~r~~~~~r~~~~a 90 (208)
T d1m7ga_ 15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR----VHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVA 90 (208)
T ss_dssp HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC----CCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC----CEEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999985899869999899999989999999988777427----5089975367887636799987667788999999999
Q ss_pred HHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC---CCCCCCEEEEEEECCCCC-----CCCCH-HHHHHHH--C---C
Q ss_conf 2125878899999899954199999999998638---888998499998589987-----98998-6898561--9---9
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLP-----NAMNA-AEITDKL--G---L 145 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~-----~~~~~-~~~~~~~--~---~ 145 (189)
..+. ..+.+.+++...+ +....++...+... ......+.+.|--++++. +.... ....... . .
T Consensus 91 ~~~~-~~g~~viv~~i~~--~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~~~~~~~~~~~~gv 167 (208)
T d1m7ga_ 91 KLFA-DSNSIAITSFISP--YRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGI 167 (208)
T ss_dssp HHHH-HTTCEEEEECCCC--CHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBTT
T ss_pred HHHH-CCCCCEEEECCCC--CHHHHHHHHHHHHHHCCCHHCCCCEEEEEECCCHHHHHHHHCCCCHHHHHCCCCCCEECC
T ss_conf 9875-2697326510200--189999999875541000103785389997488999987501232113313765522124
Q ss_pred C-CCCCC--CEEEEECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 6-43686--359997046789896999999999985123
Q 029675 146 H-SLRQR--HWYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 146 ~-~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (189)
. .++.+ ..-.+.+ +..+++++.+.+++.+.++-
T Consensus 168 d~~ye~P~~~dl~Idt---~~~s~~e~~~~Ii~~L~~~~ 203 (208)
T d1m7ga_ 168 SAPYEAPANPEVHVKN---YELPVQDAVKQIIDYLDTKG 203 (208)
T ss_dssp TBCCCCCSSCSEEEEC---SSSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCEEEEC---CCCCHHHHHHHHHHHHHHCC
T ss_conf 6667899998579859---99999999999999999868
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.70 E-value=0.0005 Score=35.59 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=21.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57766999918998768998767419
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
++.--|+++|+|||||||+...|...
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.70 E-value=0.00055 Score=35.41 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=21.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57766999918998768998767419
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.+.-.|+++|+|||||||+...|...
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99728999899999989999999998
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00045 Score=35.82 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 66999918998768998767419
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.-|+++|++|+||+||++.|+..
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 09999999999999999999863
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.69 E-value=0.00052 Score=35.53 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
..-.+++.|+||+||||+++.+...
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8873898897998788899999998
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.68 E-value=0.00046 Score=35.76 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
+.-.++++|+.|+|||||++.+.+-.
T Consensus 26 ~Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 26 KGNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99899999999971999999996620
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.68 E-value=0.00048 Score=35.69 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7669999189987689987674198
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
.=.++++|+.|+|||||++.+.+-.
T Consensus 32 Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 32 GEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999982999999997589
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.00055 Score=35.41 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 76699991899876899876741
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~ 39 (189)
++-|++.|++|||||||.+.|..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999989997879999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.68 E-value=0.001 Score=34.16 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=21.6
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 025776699991899876899876741
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
.....-.+++.|++|+|||||+..+..
T Consensus 25 ~~~~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 25 KGLRAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp HHTCSSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 840598799986999829999999999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.00047 Score=35.72 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
+.=-++++|+.|+|||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99799998999898889999875886
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.65 E-value=0.00054 Score=35.45 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 66999918998768998767419
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~ 40 (189)
--|++.|++|+||||+.+.+...
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 59999889999889999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.63 E-value=0.00054 Score=35.45 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99991899876899876741
Q 029675 20 ILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 20 i~iiG~~~~GKssli~~l~~ 39 (189)
|+++|++|+||+||+..|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999999999999997
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.61 E-value=0.0011 Score=33.90 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=21.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577669999189987689987674198
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
.+.-.+++.|++|+|||+++..+...-
T Consensus 43 ~~~~~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 43 GSMPHLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999769997899974879999999998
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=96.61 E-value=0.00058 Score=35.29 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 776699991899876899876741983
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~ 42 (189)
+.=.++++|+.|+|||||++.+.+-..
T Consensus 28 ~Ge~~~liG~sGaGKSTll~~i~gl~~ 54 (240)
T d1g2912 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998999999999809999999964878
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.00058 Score=35.32 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999918998768998767419
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~ 40 (189)
-|+++|+.|+||+||+++|...
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 1999998999999999999970
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=96.60 E-value=0.00058 Score=35.31 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
+.=-++++|+.|+|||||++.+.+-.
T Consensus 31 ~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99799999999985999999996788
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.60 E-value=0.00083 Score=34.54 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 776699991899876899876741
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
....|++.|+||+|||+++..+.+
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 980799889699988999999862
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.60 E-value=0.00066 Score=35.02 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
..-.+++.|+||+|||++.+.+...
T Consensus 34 ~~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 34 VLDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 7774898799997388999999850
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.00075 Score=34.77 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=20.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5776699991899876899876741
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
....-++++|.+|+||||+...|..
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9871899989999898999999999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=96.56 E-value=0.0004 Score=36.06 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 776699991899876899876741983
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~ 42 (189)
+.=-++++|+.|+|||||++.+.+-..
T Consensus 25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~ 51 (229)
T d3d31a2 25 SGEYFVILGPTGAGKTLFLELIAGFHV 51 (229)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 998999998999829999999964768
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.54 E-value=0.0011 Score=33.98 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 76699991899876899876741
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~ 39 (189)
+-.+++.|+||+|||+|...+.+
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 67699989999888999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.54 E-value=0.00073 Score=34.81 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=23.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 0257766999918998768998767419
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
...+.+-|++-|..||||||+++.|...
T Consensus 5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7998619998899998889999999987
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.53 E-value=0.00068 Score=34.97 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 776699991899876899876741983
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~ 42 (189)
+.=-++++|+.|+|||||++.+.+-..
T Consensus 27 ~Gei~glvG~nGaGKSTLl~~l~G~~~ 53 (238)
T d1vpla_ 27 EGEIFGLIGPNGAGKTTTLRIISTLIK 53 (238)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 897999999999999999999966988
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.00035 Score=36.37 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 776699991899876899876741
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
+...|.++|.+||||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 996999889999999999999999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=96.49 E-value=0.00073 Score=34.81 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99799999899982999999997476
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.48 E-value=0.00074 Score=34.78 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99991899876899876741
Q 029675 20 ILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 20 i~iiG~~~~GKssli~~l~~ 39 (189)
|++.|.+|+||||+++.|..
T Consensus 4 ivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989899898999999999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.48 E-value=0.00076 Score=34.73 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7669999189987689987674198
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
.=-++++|+.|+|||||++.+.+-.
T Consensus 30 Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 30 GDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799999999984999999997797
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.00049 Score=35.66 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
+.=-++++|+.|+|||||++.+.+-
T Consensus 24 ~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 24 AGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8989999989998099999999488
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.46 E-value=0.00083 Score=34.54 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
..-.++++|+||+|||.|...+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.45 E-value=0.0008 Score=34.62 Aligned_cols=21 Identities=24% Similarity=0.045 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999918998768998767419
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~iiG~~~~GKssli~~l~~~ 40 (189)
+.+.|+||+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 996789998999999999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.45 E-value=0.002 Score=32.73 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=22.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 257766999918998768998767419
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
....-.+++.|++|+|||++++.+...
T Consensus 40 ~~~~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 40 GHHYPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 988881688898999899999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.0011 Score=33.88 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
..-.+++.|+||+|||+++..+....
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 87449998799998889999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.42 E-value=0.00088 Score=34.43 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699991899876899876741
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~ 39 (189)
.|+++|.+|+||||+...+..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 889988999988999999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.40 E-value=0.0012 Score=33.76 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 66999918998768998767419
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.-|++.|.+|+||||+...|...
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 59999899999989999999997
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.36 E-value=0.002 Score=32.70 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
....+++.|+||+|||+++..+...
T Consensus 41 ~~~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 41 IPKGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8864887668988835999999987
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.0013 Score=33.62 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=21.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 02577669999189987689987674
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~ 38 (189)
...+++-|++.|.+|+|||||...+.
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 89998899837998788999999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.34 E-value=0.0018 Score=32.88 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57766999918998768998767419
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.....+++.|+||+|||++++.+...
T Consensus 36 ~~~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 36 KPPRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 98864687669988830899999987
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.34 E-value=0.00048 Score=35.71 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 776699991899876899876741983
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~~ 42 (189)
+.=.++++|+.|+|||||++.+.+-..
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~~ 56 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLDV 56 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 998999998999809999999975868
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.31 E-value=0.0022 Score=32.53 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=23.2
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 997550257766999918998768998767419
Q 029675 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 8 ~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
+.+-....+.-.+++.|++|+|||+++..+...
T Consensus 24 l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 24 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999998699885999899999849999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.30 E-value=0.0024 Score=32.37 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=21.6
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 0257766999918998768998767419
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
...+.-++++.|++|+||||+++.+...
T Consensus 32 ~~~~~~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 32 KDGNMPHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp HSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 8699874999889998705469999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.26 E-value=0.0012 Score=33.80 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 76699991899876899876741
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~ 39 (189)
+-+|+++|++|+|||-|.++|..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
T ss_conf 56479989999889999999998
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.23 E-value=0.0014 Score=33.38 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.++-|++.|.+||||||+.+.|...
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9989999898877899999999987
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| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0022 Score=32.46 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 776699991899876899876741
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
....+++.|+||+|||++++.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 888678668998882289999999
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| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.97 E-value=0.0039 Score=31.31 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 66999918998768998767419
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~ 40 (189)
-++++.|++|+|||+++..+...
T Consensus 36 ~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 36 PHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 85999889987755899999998
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.0027 Score=32.10 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 766999918998768998767419
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.-.+++.|++|+|||+++..+...
T Consensus 33 ~~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 33 LPHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 785998899999889999999976
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| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.0023 Score=32.43 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999918998768998767419
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~~ 40 (189)
-|++.|+|||||+|+...|...
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8997799988989999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.83 E-value=0.0037 Score=31.44 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
....|++.|++|+|||+|++.+....
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 88757887899876304778878771
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.80 E-value=0.0031 Score=31.77 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6699991899876899876741
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~ 39 (189)
+-|+|-|..||||||++..|..
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 9899989987899999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.76 E-value=0.0017 Score=33.10 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=20.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5776699991899876899876741
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
++..-|++.|++||||||+.+.|..
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9888999989997809999999999
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.64 E-value=0.003 Score=31.85 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=22.4
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 55025776699991899876899876741
Q 029675 11 RLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 11 ~~~~~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
........++++.|+||+|||+|+.++..
T Consensus 22 aa~~~~~h~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 22 TAVDPGIGGVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp HHHCGGGCCEEEECCGGGCTTHHHHHHHH
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 97646997089988998529999999987
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0052 Score=30.71 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=19.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 776699991899876899876741
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
+..-|++-|..|+||||++..|..
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 805999989988899999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0049 Score=30.83 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 669999189987689987674198
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
+-|++.|..||||||+.+.|....
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~G 27 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADLG 27 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799978988688999999999879
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.43 E-value=0.0028 Score=31.98 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=23.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 257766999918998768998767419
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.+..++|.|=|..|+||||+++.+...
T Consensus 2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 2 KMGVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 766169999888778899999999998
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.41 E-value=0.023 Score=27.56 Aligned_cols=33 Identities=33% Similarity=0.414 Sum_probs=26.1
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 997550257766999918998768998767419
Q 029675 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 8 ~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.+.+......=-|++.|+.|+||||.++.++..
T Consensus 149 ~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 149 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 999998641054898767877744779998666
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.35 E-value=0.0066 Score=30.21 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=21.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 25776699991899876899876741
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
....-+++++|+.|+|||-+..+|..
T Consensus 65 ~~p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 65 ELSKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 67875324418998637899999986
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=0.0061 Score=30.35 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6699991899876899876741
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~ 39 (189)
.-|++-|..||||||++..|..
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 7899989988879999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.0051 Score=30.76 Aligned_cols=23 Identities=39% Similarity=0.330 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 66999918998768998767419
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~ 40 (189)
..|++-|..||||||++..|...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999878887799999999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.18 E-value=0.011 Score=29.06 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=25.0
Q ss_pred HHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 899997550257-76699991899876899876741
Q 029675 5 FTKLFSRLFAKK-EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 5 ~~~~~~~~~~~~-~~~i~iiG~~~~GKssli~~l~~ 39 (189)
+.++.......+ ..-+++.|++|+|||+++..+..
T Consensus 11 ~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999998599673798889998759999999998
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.0058 Score=30.47 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=24.9
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8999975502577669999189987689987674198
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
|..++....+ +.--+.+.|+||+|||+|+..++...
T Consensus 23 LD~ll~GGi~-~G~~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 23 LDTLLGGGVE-TGSITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp HHHHHTSSEE-SSSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred HHHHHCCCCC-CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9963179986-99699998389998899999999986
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.033 Score=26.81 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 776699991899876899876741
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
...-+.+.|++++|||+|+-.++.
T Consensus 53 ~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 53 MGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 735899805777478999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.07 E-value=0.0067 Score=30.17 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=23.8
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 999975502577669999189987689987674198
Q 029675 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 6 ~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
..++....+. .--+++.|+||+|||+|.-.++...
T Consensus 26 D~ll~GGlp~-G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 26 DKLLGGGIET-QAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp HHHHTSSEES-SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHCCCCCC-CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9742699558-8799998589898899999999986
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.02 E-value=0.015 Score=28.52 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=21.6
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 0257766999918998768998767419
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
......-|.+.|..|.|||||...+.+.
T Consensus 40 ~~~~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 40 CDLDSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp TTSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6878408999779978889999999985
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.00 E-value=0.0083 Score=29.72 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=24.3
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 899997550257766999918998768998767419
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
|..++... -++-.+++.|++++|||.|+..++.-
T Consensus 43 l~~~l~~~--PKkn~i~~~GP~~TGKS~f~~sl~~~ 76 (205)
T d1tuea_ 43 LKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIHF 76 (205)
T ss_dssp HHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHCCC--CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99997389--87318999889985689999999998
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.0075 Score=29.95 Aligned_cols=27 Identities=26% Similarity=0.138 Sum_probs=21.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577669999189987689987674198
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
.+.--+.+.|+||+|||+|...++.+.
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 599799999589999999999999999
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=94.94 E-value=0.0081 Score=29.77 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
..++|.|=|..|+||||+++.|...
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6589999888667899999999998
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.92 E-value=0.0096 Score=29.41 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6699991899876899876741
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~ 39 (189)
+-|++.|..||||||+.+.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999888887889999999998
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.0087 Score=29.62 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
...+++|+|.+|+|||+++..++.+
T Consensus 49 ~~~H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 5265899907999689999999999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.79 E-value=0.072 Score=25.19 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 776699991899876899876741
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
...-..+.|++++|||+|+-.+..
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 633699964887488999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.011 Score=29.07 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=20.2
Q ss_pred CCCC-EEEEECCCCCCHHHHHHHHHC
Q ss_conf 5776-699991899876899876741
Q 029675 15 KKEM-RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 15 ~~~~-~i~iiG~~~~GKssli~~l~~ 39 (189)
.+.. .++++|++|+|||.|...+..
T Consensus 49 ~~p~~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 49 HKPVGSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp TSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 88765899977875006999999986
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.0089 Score=29.57 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 66999918998768998767419
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~~ 40 (189)
.-|++=|..||||||+++.|...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~ 25 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 19999899888599999999998
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.76 E-value=0.0092 Score=29.51 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=18.5
Q ss_pred CCEE-EEECCCCCCHHHHHHHHHCC
Q ss_conf 7669-99918998768998767419
Q 029675 17 EMRI-LMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 17 ~~~i-~iiG~~~~GKssli~~l~~~ 40 (189)
.-.+ ++.|+||+|||.|...+.+.
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8863888779985088999999998
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.64 E-value=0.079 Score=25.01 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=19.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 776699991899876899876741
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
...-+.+.|++++|||+|+..++.
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 754789805876522799999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.63 E-value=0.01 Score=29.33 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
+.--+++.|+||+|||+|+.++..+
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9849999918999999999999999
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.019 Score=27.95 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=18.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6699991899876899876741
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~~ 39 (189)
..+++.|++|+|||+++..+..
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 0598888998758999999999
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.51 E-value=0.0089 Score=29.58 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 766999918998768998767419
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
..+|.|=|.-|+||||+++.|...
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~~ 27 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVAL 27 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 429999898677899999999998
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.33 E-value=0.014 Score=28.61 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5776699991899876899876741983
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI 42 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~ 42 (189)
-...-+++.|++|+||||+.-.+.....
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~~~g~ 39 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELVQRGH 39 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred ECCEEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999980899998999999998599
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.32 E-value=0.013 Score=28.76 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77669999189987689987674198
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
..--+++.|++|+|||+|...+..+.
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 88599999179999899999999999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.31 E-value=0.013 Score=28.72 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=18.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 776699991899876899876741
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
+.--+++.|.||+|||+|+..+..
T Consensus 34 ~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 980899994799979999999997
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.014 Score=28.61 Aligned_cols=25 Identities=20% Similarity=0.044 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
+.--+++.|+||+|||+|...++..
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8979999889988788999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.09 E-value=0.018 Score=28.12 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5776699991899876899876741983
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI 42 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~ 42 (189)
-...-+++.|++|+|||++.-.+.....
T Consensus 13 ~~g~gvli~G~sG~GKS~lal~l~~~G~ 40 (177)
T d1knxa2 13 VFGVGVLLTGRSGIGKSECALDLINKNH 40 (177)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 9999999981899998999999998597
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.07 E-value=0.023 Score=27.56 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=23.9
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 89999755025776699991899876899876741
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
|..++.... .++--+.+.|++++|||+|++.+..
T Consensus 93 l~~~L~~~~-~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 93 FLGWATKKF-GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHTTCS-TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHCCCC-CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999975999-7617999985898877899999999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=0.015 Score=28.53 Aligned_cols=21 Identities=14% Similarity=0.482 Sum_probs=17.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7669999189987689987674
Q 029675 17 EMRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l~ 38 (189)
.+ -+++|+-|+|||+++..+.
T Consensus 26 ~l-~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 26 NF-TSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp SE-EEEECSTTSSHHHHHHHHH
T ss_pred CE-EEEECCCCCCHHHHHHHHH
T ss_conf 98-9999999998899999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.80 E-value=0.023 Score=27.55 Aligned_cols=24 Identities=42% Similarity=0.416 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 776699991899876899876741
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
+..-|++-|..|+||||+++.|..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 768999989988869999999999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.74 E-value=0.013 Score=28.83 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 6999918998768998767
Q 029675 19 RILMVGLDAAGKTTILYKL 37 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l 37 (189)
--+++|+-|+|||+++..+
T Consensus 26 lnvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEEEECCTTTCSTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 1999999998489999999
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=93.63 E-value=0.017 Score=28.24 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=15.2
Q ss_pred CEEEEECCCCCCHHHH-HHHH
Q ss_conf 6699991899876899-8767
Q 029675 18 MRILMVGLDAAGKTTI-LYKL 37 (189)
Q Consensus 18 ~~i~iiG~~~~GKssl-i~~l 37 (189)
-.++|.|.+|+|||+. ++++
T Consensus 25 g~~lV~g~aGSGKTt~l~~ri 45 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVLTHRI 45 (318)
T ss_dssp SCEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHH
T ss_conf 998999529866899999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.63 E-value=0.021 Score=27.74 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=18.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 77669999189987689987674
Q 029675 16 KEMRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~ 38 (189)
+.--+++.|++|+|||+|...++
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHH
T ss_conf 98399999479999999999999
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=93.60 E-value=0.013 Score=28.72 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=15.1
Q ss_pred CEEEEECCCCCCHHHH-HHHH
Q ss_conf 6699991899876899-8767
Q 029675 18 MRILMVGLDAAGKTTI-LYKL 37 (189)
Q Consensus 18 ~~i~iiG~~~~GKssl-i~~l 37 (189)
-.++|.|.||+|||+. ++++
T Consensus 15 ~~~lI~g~aGTGKTt~l~~rv 35 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVITNKI 35 (306)
T ss_dssp SEEEECCCTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCHHHHHHHHH
T ss_conf 998999628843899999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.41 E-value=0.027 Score=27.27 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5776699991899876899876741983
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI 42 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~ 42 (189)
-...-+++.|++|+|||++.-.+.....
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l~~~g~ 40 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALELIKRGH 40 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred ECCEEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999980899999999999998499
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.21 E-value=0.027 Score=27.21 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.6
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 669999189987689987674
Q 029675 18 MRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~~l~ 38 (189)
--.++.|++|+|||+|+-.+.
T Consensus 30 ~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 30 TVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHH
T ss_conf 589999289998999999999
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.09 E-value=0.028 Score=27.16 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699991899876899876741
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~~l~~ 39 (189)
-|++.|..||||||+.+-|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.96 E-value=0.031 Score=26.95 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=16.7
Q ss_pred CCEEEEECCCCCCHHHHHHHH
Q ss_conf 766999918998768998767
Q 029675 17 EMRILMVGLDAAGKTTILYKL 37 (189)
Q Consensus 17 ~~~i~iiG~~~~GKssli~~l 37 (189)
.--.++.|+||+|||+++..+
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHHH
T ss_conf 885999768988752169999
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.67 E-value=0.039 Score=26.47 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=20.4
Q ss_pred CCCCC-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 25776-6999918998768998767419
Q 029675 14 AKKEM-RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 14 ~~~~~-~i~iiG~~~~GKssli~~l~~~ 40 (189)
+.+.. .++++|++|+|||.+...+...
T Consensus 49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 49 PNRPIGSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp SSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8887669999788862489999999998
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.40 E-value=0.044 Score=26.22 Aligned_cols=29 Identities=28% Similarity=0.242 Sum_probs=23.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 02577669999189987689987674198
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
|--+.=+++++|++|+|||+|+..+..+.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 64578755686799988789999999977
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.0069 Score=30.11 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999189987689987674
Q 029675 20 ILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 20 i~iiG~~~~GKssli~~l~ 38 (189)
.+++|+-|+|||||+..+.
T Consensus 27 tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 8998899998799999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.88 E-value=0.049 Score=26.01 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999189987689987674198
Q 029675 20 ILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 20 i~iiG~~~~GKssli~~l~~~~ 41 (189)
+.+.|++|+|||-|++.+....
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 7998889983999999999874
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.99 E-value=0.38 Score=21.72 Aligned_cols=79 Identities=8% Similarity=0.068 Sum_probs=47.8
Q ss_pred CEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEE-EEEECCCCCCCCCHH-
Q ss_conf 979999975899886010652125878899999899954199999999998638888998499-998589987989986-
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNAA- 137 (189)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~- 137 (189)
.+.+.++|+|+..... ....+..+|.++++...+ ..++.........+. + .+.|+. ++.|+.+..+.....
T Consensus 111 ~~d~IiiD~~~~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~-~---~~~~~~giv~N~~~~~~~~~~~~ 183 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQLD--AMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLK-K---AGLAILGFVLNRYGRSDRDIPPE 183 (237)
T ss_dssp GCSEEEEECCSSSSHH--HHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHH-H---TTCEEEEEEEEEETSCTTCCCHH
T ss_pred CCCEEEECCCCCCCCC--CHHHHHHHHCCCCCCCCC-CEECCHHHHHHHHHH-H---HHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 2898998043321111--001222221034343210-000110367777775-3---10234432101356532002068
Q ss_pred HHHHHHCC
Q ss_conf 89856199
Q 029675 138 EITDKLGL 145 (189)
Q Consensus 138 ~~~~~~~~ 145 (189)
......+.
T Consensus 184 ~~~~~~~~ 191 (237)
T d1g3qa_ 184 AAEDVMEV 191 (237)
T ss_dssp HHHHHHCS
T ss_pred HHHHHCCC
T ss_conf 88863385
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=89.97 E-value=0.21 Score=22.96 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=19.7
Q ss_pred HHHHHHHHHCCCCCEEE-EECCCCCCHHHHHHHH
Q ss_conf 89999755025776699-9918998768998767
Q 029675 5 FTKLFSRLFAKKEMRIL-MVGLDAAGKTTILYKL 37 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~-iiG~~~~GKssli~~l 37 (189)
++.+..... ++..+|+ +.|..|+||||+.-.|
T Consensus 8 ~~~~~~~~~-~~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 8 LSALVDDIA-RNEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp HHHHHHHHH-TTSCEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHH-CCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 889998850-379789999799988789999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.41 E-value=0.13 Score=23.97 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=21.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57766999918998768998767419
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
-+.=|+.++|.+++|||+|+..+..+
T Consensus 66 gkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 66 AKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67887776679998989999999998
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.60 E-value=0.14 Score=23.85 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=22.5
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 02577669999189987689987674
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~ 38 (189)
.+++.|-|.+.|..++||+++.+.|.
T Consensus 2 r~kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 2 RPKQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GGGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 87651699980888778889999999
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=87.64 E-value=0.19 Score=23.15 Aligned_cols=118 Identities=10% Similarity=0.072 Sum_probs=58.5
Q ss_pred CEEEEEEECCCCCCCHH-CHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCE-EEEEEECCCCCCCCC-H
Q ss_conf 97999997589988601-06521258788999998999541999999999986388889984-999985899879899-8
Q 029675 60 NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A 136 (189)
Q Consensus 60 ~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~ 136 (189)
.+.+.++|+|+...... ........+|.++++.+.. ..++.........+.......+.+ .-++.|+.+.....+ .
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~ 193 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELL 193 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHH
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHCCCCEEECCCHH-HHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCCCHH
T ss_conf 6888986467752254899999862157333213404-667778999999998640345200133487666277751011
Q ss_pred HHHHHHHCCCCCCCCCEEEEEC------CCCCCC---------CHHHHHHHHHHHHHHCCCC
Q ss_conf 6898561996436863599970------467898---------9699999999998512366
Q 029675 137 AEITDKLGLHSLRQRHWYIQST------CATSGE---------GLYEGLDWLSNNIASKVSS 183 (189)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~------Sa~~~~---------~i~~~~~~i~~~~~~~~~~ 183 (189)
+++.+.++.... ..++- +...|. .....+..+.+.+.+....
T Consensus 194 ~~~~~~~~~~~~-----~~IP~d~~i~~a~~~g~~v~~~~p~s~~a~~~~~La~~i~~~~~~ 250 (269)
T d1cp2a_ 194 DAFAKELGSQLI-----HFVPRSPMVTKAEINKQTVIEYDPTCEQAEEYRELARKVDANELF 250 (269)
T ss_dssp HHHHHHHTCCEE-----EEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHCCCEEE-----EEEECCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 356766297279-----999168789999987997599896999999999999999769999
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=87.12 E-value=0.41 Score=21.56 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=46.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH------CCCCCCCCCCCCCEEE--EE-EECCEEEEEEECCCCCCCHHCHHHHCCCCC
Q ss_conf 77669999189987689987674------1983235687671378--99-983979999975899886010652125878
Q 029675 16 KEMRILMVGLDAAGKTTILYKLK------LGEIVTTIPTIGFNVE--TV-EYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~------~~~~~~~~~t~~~~~~--~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (189)
...--+++|+-.|||||-+=+.. +....--.|..+..+. .+ ...+.+..-.... ..........++.|
T Consensus 6 ~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~Ry~~~~i~sh~g~~~~a~~~~---~~~~~~~~~~~~~d 82 (141)
T d1xx6a1 6 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIK---NSREILKYFEEDTE 82 (141)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEES---SSTHHHHHCCTTCS
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEEEC---CHHHHHHHHCCCCC
T ss_conf 505999990606689999999999854337729999964235642111462036447778823---33555554213556
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 8999998999541999999999986388889984999985899879
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (189)
++. +|= ..-|.....+....+.. .++++++.|-..|-..
T Consensus 83 vI~--IDE--~QFf~d~~~~~~~~l~~---~g~~Viv~GLd~Df~~ 121 (141)
T d1xx6a1 83 VIA--IDE--VQFFDDEIVEIVNKIAE---SGRRVICAGLDMDFRG 121 (141)
T ss_dssp EEE--ECS--GGGSCTHHHHHHHHHHH---TTCEEEEEECSBCTTS
T ss_pred EEE--EEE--HHHCCCCHHHHHHHHEE---CCCEEEEEEECCCCCC
T ss_conf 999--950--12136307889875145---7958999996364255
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=86.56 E-value=0.22 Score=22.84 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5776699991899876899876741
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~ 39 (189)
....-|++.|.+|+||+.+...+..
T Consensus 21 ~~~~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 21 CAECPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 8899789989998179999999999
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=85.91 E-value=0.4 Score=21.60 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=17.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 57766999918998768998767
Q 029675 15 KKEMRILMVGLDAAGKTTILYKL 37 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l 37 (189)
+...-|.+.|..|+||||+.-.+
T Consensus 6 ~~p~~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 6 NIPPYLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHH
T ss_conf 89859999799867499999999
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.20 E-value=0.23 Score=22.79 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=21.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 2577669999189987689987674198
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~~~ 41 (189)
--+.=|+.++|.+++|||+|+..+..+.
T Consensus 65 ig~GQr~~If~~~g~GKt~ll~~~~~~~ 92 (285)
T d2jdia3 65 IGRGQRELIIGDRQTGKTSIAIDTIINQ 92 (285)
T ss_dssp CBTTCBCEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6678778765688888589999999757
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=84.42 E-value=0.33 Score=22.01 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999189987689987674198
Q 029675 20 ILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 20 i~iiG~~~~GKssli~~l~~~~ 41 (189)
++|+|...+|||.+..++....
T Consensus 2 iLVtGGarSGKS~~AE~l~~~~ 23 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGDA 23 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8997898765999999998458
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.63 E-value=0.38 Score=21.71 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=24.4
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 899997550257766999918998768998767
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l 37 (189)
+..+.......+..+-++.|+.|+|||-..-..
T Consensus 92 i~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a 124 (264)
T d1gm5a3 92 HQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLA 124 (264)
T ss_dssp HHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf 999998762367531566635355665999999
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=82.88 E-value=0.59 Score=20.77 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99997550257766999918998768998767
Q 029675 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37 (189)
Q Consensus 6 ~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l 37 (189)
..+.+.....+....++.|..|+|||-..-..
T Consensus 65 ~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a 96 (233)
T d2eyqa3 65 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 96 (233)
T ss_dssp HHHHHHHHSSSCCEEEEECCCCTTTHHHHHHH
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 99999985457667089838887728999999
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=81.86 E-value=0.33 Score=22.01 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHH
Q ss_conf 69999189987689987
Q 029675 19 RILMVGLDAAGKTTILY 35 (189)
Q Consensus 19 ~i~iiG~~~~GKssli~ 35 (189)
--++.|..|+|||||-.
T Consensus 16 ~alfFGLSGTGKTTLs~ 32 (313)
T d2olra1 16 VAVFFGLSGTGKTTLST 32 (313)
T ss_dssp EEEEECSTTSSHHHHHC
T ss_pred EEEEECCCCCCCCCCEE
T ss_conf 89997047798560232
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.99 E-value=0.35 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7766999918998768998767419
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~iiG~~~~GKssli~~l~~~ 40 (189)
+.=|+.++|.+++|||+|+-.+...
T Consensus 66 ~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 66 RGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 7766760067788857999997765
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=80.87 E-value=0.36 Score=21.81 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.1
Q ss_pred CEEEEECCCCCCHHHHHH
Q ss_conf 669999189987689987
Q 029675 18 MRILMVGLDAAGKTTILY 35 (189)
Q Consensus 18 ~~i~iiG~~~~GKssli~ 35 (189)
---++.|..|+|||||-.
T Consensus 15 ~valffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 15 DVAVFFGLSGTGKTTLST 32 (318)
T ss_dssp CEEEEEECTTSCHHHHTC
T ss_pred CEEEEECCCCCCCCCCCC
T ss_conf 889997368798142210
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=80.01 E-value=0.53 Score=21.01 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=22.2
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 8788999998999541999999999986388889984999985899879
Q 029675 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 132 (189)
..| ++.+|=. .-|.....++...+.. .++++++.|-..|-..
T Consensus 79 ~~d--vI~IDE~--QFf~d~i~~~~~~~~~---~g~~Viv~GLd~Df~~ 120 (139)
T d2b8ta1 79 ETK--VIGIDEV--QFFDDRICEVANILAE---NGFVVIISGLDKNFKG 120 (139)
T ss_dssp TCC--EEEECSG--GGSCTHHHHHHHHHHH---TTCEEEEECCSBCTTS
T ss_pred CCC--EEEECHH--HHCCHHHHHHHHHHHH---CCCEEEEEEECCCCCC
T ss_conf 767--9996103--4356158899999984---4851899996154156
|