Citrus Sinensis ID: 029702

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRKQRKKMKGTE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHcccEEcccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccEEEcccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHEcccccHHHHHHHHHHHHcccccccccccccccEEEEEccccHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKATSMQLKKLQQELNAMlsrplqpktfsrhylagagvsplLQRQLEEIAkeklpdsksaIENKRRKLVVIGQDCVEPLQALrnaghevhmdgKEMAEKRRNLDSLRRKRKEEKKRLRDQCRKQRKKMKGTE
Flexible Loop (DISEMBL)
mpevmkrmslarqidkimrkdsqeKAKKTWFERNAEAVelvvdnydseeevvknrkqkkatsmqLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAkeklpdsksaienkrrkLVVIGQDCVEPLQALRnaghevhmdgkemaekrrnldslrrkrkeekkrlrdqcrkqrkkmkgte
Low Complexity Region (SEG)
MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSlrrkrkeekkrlrDQCRKQRKKMKGTE
Disordered region (IsUnstruct)
*****************************WFERNAEAVELVVD********************************************HYLAGAGV****************************KLVVIGQDCVEPLQAL**************************************************
Disordered Region (DISOPRED)
***VMKRMSLARQID*******************AEAVEL*******************************LNAMLS**************************************************IGQDCVE*******************************************************
Disordered Region (DISEMBL)
********SLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDS******************KKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRK***********************
Disordered Region (DISPRO)
MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKE************RRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKR****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEExxxxxxxxxxxxxxxxxxxxxxxxxxxxPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQDCVEPLQALRNAGHEVHMDGKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMKGTE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
A3AVH5	832	DEAD-box ATP-dependent RN	yes	no	0.984	0.223	0.575	1e-52
A2XVF7	832	DEAD-box ATP-dependent RN	N/A	no	0.984	0.223	0.575	1e-52
Q93Y39	826	DEAD-box ATP-dependent RN	yes	no	0.984	0.225	0.526	5e-39
Q54TD7	940	ATP-dependent RNA helicas	yes	no	0.661	0.132	0.283	5e-06

>sp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica GN=Os04g0510400 PE=2 SV=2

 Score =  205 bits (522), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 142/186 (76%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           MP VM R++LARQIDKI RK+SQE A K+W +RNAE++ L+++  DSEEE V+  KQ+KA
Sbjct: 644 MPAVMNRLTLARQIDKITRKNSQENANKSWLQRNAESMGLLLETSDSEEERVQGHKQRKA 703

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
           TS  L+KLQQ+L+ +L RPLQPKTFSR YLAGAGVSPLLQ+QLEE++K  +  S S   N
Sbjct: 704 TSANLQKLQQDLSELLQRPLQPKTFSRRYLAGAGVSPLLQKQLEELSKRNVKGSASVNAN 763

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
           K  + VVIGQD +EPLQAL+N+G EV +   +  EKRR  ++ RRK+++EKK  R+Q RK
Sbjct: 764 KGSRFVVIGQDQIEPLQALQNSGQEVCVSIDKQREKRRLAENWRRKKQKEKKSTREQKRK 823

Query: 181 QRKKMK 186
           +++  K
Sbjct: 824 EKRIAK 829

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. indica GN=OsI_016050 PE=2 SV=2

 Score =  205 bits (522), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 142/186 (76%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           MP VM R++LARQIDKI RK+SQE A K+W +RNAE++ L+++  DSEEE V+  KQ+KA
Sbjct: 644 MPAVMNRLTLARQIDKITRKNSQENANKSWLQRNAESMGLLLETSDSEEERVQGHKQRKA 703

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
           TS  L+KLQQ+L+ +L RPLQPKTFSR YLAGAGVSPLLQ+QLEE++K  +  S S   N
Sbjct: 704 TSANLQKLQQDLSELLQRPLQPKTFSRRYLAGAGVSPLLQKQLEELSKRNVKGSASVNAN 763

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
           K  + VVIGQD +EPLQAL+N+G EV +   +  EKRR  ++ RRK+++EKK  R+Q RK
Sbjct: 764 KGSRFVVIGQDQIEPLQALQNSGQEVCVSIDKQREKRRLAENWRRKKQKEKKSTREQKRK 823

Query: 181 QRKKMK 186
           +++  K
Sbjct: 824 EKRIAK 829

Oryza sativa subsp. indica (taxid: 39946)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana GN=RH13 PE=2 SV=3

 Score =  160 bits (405), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/186 (52%), Positives = 134/186 (72%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           MP V KR+ LARQI +I RK S+E A +TW +++AE++EL +D+ +SEEE V N +Q+KA
Sbjct: 636 MPAVRKRLYLARQIYEIERKGSRENADRTWLKKHAESMELELDDEESEEERVDNVRQRKA 695

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
           TS +L KL++EL+ +LS P+QPK FS  Y AG GVS L+Q Q  E+ K+K    +   + 
Sbjct: 696 TSARLNKLKEELSTLLSHPMQPKKFSGRYFAGVGVSTLMQNQFVELKKQKQAQMQIGGDI 755

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
           KRRKLVVI Q+C+EPLQALR  G+E+     + AEKRR++ SL++KRKEEK   RDQ R 
Sbjct: 756 KRRKLVVINQNCIEPLQALRAGGNEMLKMKGQSAEKRRDIASLKKKRKEEKIGRRDQRRN 815

Query: 181 QRKKMK 186
           Q+K+ K
Sbjct: 816 QKKQRK 821

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q54TD7|DDX24_DICDI ATP-dependent RNA helicase ddx24 OS=Dictyostelium discoideum GN=ddx24 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 9/134 (6%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVD------NYDSEE-EVVK 53
           M  V  R+ LA++IDK+  +  ++  +K+WF++ AE +++ +D      N D E+ E  +
Sbjct: 796 MEGVRDRIELAKEIDKLSHQSLKDNREKSWFKKQAEEMDIELDGDFFGENSDDEQSEDTR 855

Query: 54  NRKQKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPD 113
             +QKK    +LK+L+ +L  +LSR L P+  S+ Y+  + +  L  +     A +    
Sbjct: 856 IAEQKK--QFKLKQLRAQLKHLLSRSLLPRGVSQSYITASAIQELESKSQSSAATDFSNK 913

Query: 114 SKSAIENKRRKLVV 127
           +K+ I  K ++L +
Sbjct: 914 AKNVIGKKAKQLAI 927

ATP-dependent RNA helicase.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
255554326	284	dead box ATP-dependent RNA helicase, put	0.989	0.658	0.737	1e-68
225433316	788	PREDICTED: DEAD-box ATP-dependent RNA he	0.920	0.220	0.764	1e-67
224107545	847	predicted protein [Populus trichocarpa]	0.984	0.219	0.731	3e-63
449458872	848	PREDICTED: DEAD-box ATP-dependent RNA he	0.984	0.219	0.684	4e-61
357505253	798	DEAD-box ATP-dependent RNA helicase [Med	0.936	0.221	0.644	4e-54
356520440	810	PREDICTED: DEAD-box ATP-dependent RNA he	0.846	0.197	0.643	3e-53
357167963	872	PREDICTED: DEAD-box ATP-dependent RNA he	0.984	0.213	0.586	2e-52
218195193	776	hypothetical protein OsI_16604 [Oryza sa	0.984	0.239	0.575	2e-51
222629189	776	hypothetical protein OsJ_15428 [Oryza sa	0.984	0.239	0.575	6e-51
115459372	832	Os04g0510400 [Oryza sativa Japonica Grou	0.984	0.223	0.575	6e-51

>gi|255554326|ref|XP_002518203.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223542799|gb|EEF44336.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 167/187 (89%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           MPEVMKR+SLARQIDKIMRKDSQEKA K+WFERNAE++EL+++  DSE+E V N KQKK 
Sbjct: 95  MPEVMKRLSLARQIDKIMRKDSQEKATKSWFERNAESIELMMEKDDSEDERVNNHKQKKI 154

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
           TSMQL K QQELN++LSRPLQPK+FS  YLAGAG+SPLLQ QLEE+A++KL +S ++ +N
Sbjct: 155 TSMQLNKFQQELNSLLSRPLQPKSFSHRYLAGAGISPLLQHQLEELARQKLGNSVNSRDN 214

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
           KRRKLVVIGQDCVEPL+ALR+AGHEV MD KEMAEKR+++++ +RKRKEEKKRLRDQ RK
Sbjct: 215 KRRKLVVIGQDCVEPLEALRSAGHEVRMDVKEMAEKRKSMENFKRKRKEEKKRLRDQRRK 274

Query: 181 QRKKMKG 187
           Q+KK+ G
Sbjct: 275 QKKKLTG 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433316|ref|XP_002282504.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Vitis vinifera] gi|296083755|emb|CBI23744.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/174 (76%), Positives = 153/174 (87%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           MPEV+KR+SLARQIDKI RKDSQEKAKK+WFE+NAEA+EL+VD  DSEEE VK  KQKKA
Sbjct: 599 MPEVVKRLSLARQIDKISRKDSQEKAKKSWFEQNAEALELIVDESDSEEEKVKIHKQKKA 658

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
           +SM L KLQQELN +LS PLQPKTFS  +LAGAGVSPLLQRQ EE++K+KL D +S  E+
Sbjct: 659 SSMHLNKLQQELNMLLSHPLQPKTFSHRFLAGAGVSPLLQRQFEELSKQKLDDGRSLGES 718

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRL 174
           KRRKL+VIGQ+CVEPLQALR+AG EV MD KE AEKRR+L+SLRRKRKEEKK+L
Sbjct: 719 KRRKLLVIGQECVEPLQALRSAGQEVCMDVKETAEKRRSLESLRRKRKEEKKQL 772

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107545|ref|XP_002314517.1| predicted protein [Populus trichocarpa] gi|222863557|gb|EEF00688.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 136/186 (73%), Positives = 160/186 (86%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           M EVM+R+SLARQIDKI RKDSQEKAKKTWFERNAE++EL+V+N DSEEE V N KQK+ 
Sbjct: 658 MQEVMRRLSLARQIDKITRKDSQEKAKKTWFERNAESIELMVENDDSEEERVNNHKQKRV 717

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
           TSMQLK LQQELN +LSRPLQPK+FS  YLAGAG+SPLLQ Q EE+ ++KL    +  +N
Sbjct: 718 TSMQLKNLQQELNTLLSRPLQPKSFSHRYLAGAGISPLLQHQFEELTRQKLDQGVNLGDN 777

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
           KRRKLVVIGQDCVEPLQALR++G EV MD KE AEKRR+L++LRRKRK EKKRLRDQ R+
Sbjct: 778 KRRKLVVIGQDCVEPLQALRSSGQEVRMDVKETAEKRRDLENLRRKRKGEKKRLRDQRRQ 837

Query: 181 QRKKMK 186
           Q+K++K
Sbjct: 838 QKKRLK 843

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458872|ref|XP_004147170.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Cucumis sativus]

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 152/187 (81%), Gaps = 1/187 (0%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           MPEV+KR+SLARQIDKI+RK+SQEKA KTWFERNAE VELVVDN DSEEE   N KQKK 
Sbjct: 661 MPEVLKRLSLARQIDKIVRKESQEKASKTWFERNAELVELVVDNDDSEEERANNYKQKKV 720

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
             +QLKKLQQEL+ +LS PLQPK+FS  YLAGAGVSPLLQ Q EE+AK+     ++  +N
Sbjct: 721 GCIQLKKLQQELDKLLSHPLQPKSFSHRYLAGAGVSPLLQHQFEELAKQN-TSVQTMGDN 779

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
           KRRKL   GQD  EPLQALR  G +VHM+ KEMAEKRR ++++++K+KEEKKRLRDQ R 
Sbjct: 780 KRRKLAAFGQDLTEPLQALRTGGQQVHMNAKEMAEKRRKMENVKKKKKEEKKRLRDQRRN 839

Query: 181 QRKKMKG 187
           +RK+MKG
Sbjct: 840 KRKQMKG 846

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505253|ref|XP_003622915.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|355497930|gb|AES79133.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 114/177 (64%), Positives = 144/177 (81%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           MPEV+KR+SLARQIDKI RKDSQEKA+K+WF+RNA +V+LV +NYDSEEE V   +QKKA
Sbjct: 609 MPEVLKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVDLVTENYDSEEEQVNKCRQKKA 668

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
           +S QLKKLQ EL+ ++SRPLQ KTFS  YLAGAGV+PLLQ QL+++A++K+ D + A   
Sbjct: 669 SSKQLKKLQMELSMLISRPLQSKTFSHRYLAGAGVTPLLQEQLQQLARQKISDRQGAGFG 728

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQ 177
           K+ +LVVIGQDCV+ L ALR+AG EV MD K+    +RN+ + +RKRKEEK RLRDQ
Sbjct: 729 KKGRLVVIGQDCVDALHALRSAGEEVRMDTKDSTRGQRNMVNAKRKRKEEKTRLRDQ 785

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520440|ref|XP_003528870.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Glycine max]

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/160 (64%), Positives = 132/160 (82%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           MPEV+KR+SLARQIDKI RKDSQEKA+K WF+RN+ +VELV ++YDSEEE V   KQ KA
Sbjct: 621 MPEVLKRLSLARQIDKITRKDSQEKAEKNWFDRNSSSVELVTESYDSEEEQVNKHKQMKA 680

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
           +S QLKKLQ++L  ++SRPLQ KTFS  YLAGAGV+PL+Q QL+++A++KL D + +   
Sbjct: 681 SSRQLKKLQEDLKILISRPLQSKTFSHRYLAGAGVTPLMQEQLQQLARQKLSDHQGSGLG 740

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNL 160
           K+ KLVVIGQDCV+ LQALR+AG EV MD K++A K+RN+
Sbjct: 741 KKGKLVVIGQDCVDALQALRSAGEEVRMDAKDLAGKQRNM 780

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357167963|ref|XP_003581416.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Brachypodium distachyon]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 143/186 (76%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           MP VM R+SLARQIDKI RK+SQE A K+W +RNAE++ L+++  DSEEE V+  KQ+KA
Sbjct: 684 MPAVMNRLSLARQIDKISRKNSQENANKSWLQRNAESMGLILEGSDSEEERVQGHKQRKA 743

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
            S QL+KLQQ+LN +L RPLQPKTFSR YLAGAGVSPLLQ+QLEE++K  +  + S  EN
Sbjct: 744 ISAQLQKLQQDLNELLQRPLQPKTFSRRYLAGAGVSPLLQKQLEELSKRDVNGNSSKNEN 803

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
           K  + V+IGQD +EPLQAL+N+G E+ ++  +  EKRR  ++ +RK+ EEKK  R+Q RK
Sbjct: 804 KGSQFVIIGQDRMEPLQALQNSGQEICVNMDKQREKRRLAENWKRKKHEEKKSTREQKRK 863

Query: 181 QRKKMK 186
            R+K K
Sbjct: 864 DRRKAK 869

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195193|gb|EEC77620.1| hypothetical protein OsI_16604 [Oryza sativa Indica Group]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 143/186 (76%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           MP VM R++LARQIDKI RK+SQE A K+W +RNAE++ L+++  DSEEE V+  KQ+KA
Sbjct: 588 MPAVMNRLTLARQIDKITRKNSQENANKSWLQRNAESMGLLLETSDSEEERVQGHKQRKA 647

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
           TS  L+KLQQ+L+ +L RPLQPKTFSR YLAGAGVSPLLQ+QLEE++K  +  S S   N
Sbjct: 648 TSANLQKLQQDLSELLQRPLQPKTFSRRYLAGAGVSPLLQKQLEELSKRNVKGSASVNAN 707

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
           K  + VVIGQD +EPLQAL+N+G EV +   ++ EKRR  ++ RRK+++EKK  R+Q RK
Sbjct: 708 KGSRFVVIGQDQIEPLQALQNSGQEVCVSIDKLREKRRLAENWRRKKQKEKKSTREQKRK 767

Query: 181 QRKKMK 186
           +++  K
Sbjct: 768 EKRIAK 773

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222629189|gb|EEE61321.1| hypothetical protein OsJ_15428 [Oryza sativa Japonica Group]

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 142/186 (76%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           MP VM R++LARQIDKI RK+SQE A K+W +RNAE++ L+++  DSEEE V+  KQ+KA
Sbjct: 588 MPAVMNRLTLARQIDKITRKNSQENANKSWLQRNAESMGLLLETSDSEEERVQGHKQRKA 647

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
           TS  L+KLQQ+L+ +L RPLQPKTFSR YLAGAGVSPLLQ+QLEE++K  +  S S   N
Sbjct: 648 TSANLQKLQQDLSELLQRPLQPKTFSRRYLAGAGVSPLLQKQLEELSKRNVKGSASVNAN 707

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
           K  + VVIGQD +EPLQAL+N+G EV +   +  EKRR  ++ RRK+++EKK  R+Q RK
Sbjct: 708 KGSRFVVIGQDQIEPLQALQNSGQEVCVSIDKQREKRRLAENWRRKKQKEKKSTREQKRK 767

Query: 181 QRKKMK 186
           +++  K
Sbjct: 768 EKRIAK 773

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115459372|ref|NP_001053286.1| Os04g0510400 [Oryza sativa Japonica Group] gi|158513183|sp|A2XVF7.2|RH13_ORYSI RecName: Full=DEAD-box ATP-dependent RNA helicase 13 gi|158513708|sp|A3AVH5.2|RH13_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 13 gi|32488303|emb|CAE03369.1| OSJNBb0065L13.12 [Oryza sativa Japonica Group] gi|113564857|dbj|BAF15200.1| Os04g0510400 [Oryza sativa Japonica Group] gi|116311068|emb|CAH67998.1| OSIGBa0157K09-H0214G12.9 [Oryza sativa Indica Group]

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 142/186 (76%)

Query: 1   MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
           MP VM R++LARQIDKI RK+SQE A K+W +RNAE++ L+++  DSEEE V+  KQ+KA
Sbjct: 644 MPAVMNRLTLARQIDKITRKNSQENANKSWLQRNAESMGLLLETSDSEEERVQGHKQRKA 703

Query: 61  TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
           TS  L+KLQQ+L+ +L RPLQPKTFSR YLAGAGVSPLLQ+QLEE++K  +  S S   N
Sbjct: 704 TSANLQKLQQDLSELLQRPLQPKTFSRRYLAGAGVSPLLQKQLEELSKRNVKGSASVNAN 763

Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
           K  + VVIGQD +EPLQAL+N+G EV +   +  EKRR  ++ RRK+++EKK  R+Q RK
Sbjct: 764 KGSRFVVIGQDQIEPLQALQNSGQEVCVSIDKQREKRRLAENWRRKKQKEKKSTREQKRK 823

Query: 181 QRKKMK 186
           +++  K
Sbjct: 824 EKRIAK 829

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2086775	826	AT3G16840 [Arabidopsis thalian	0.978	0.223	0.491	8.4e-39
DICTYBASE|DDB_G0281841	940	ddx24 "DEAD/DEAH box helicase"	0.661	0.132	0.283	6.1e-10
FB|FBgn0034496	813	CG9143 [Drosophila melanogaste	0.656	0.152	0.25	5.4e-08
UNIPROTKB|E2RIC4	818	DDX24 "Uncharacterized protein	0.497	0.114	0.330	5e-05
MGI|MGI:1351337	857	Ddx24 "DEAD (Asp-Glu-Ala-Asp)	0.523	0.115	0.324	5.3e-05
UNIPROTKB|F5GYL3	609	DDX24 "ATP-dependent RNA helic	0.518	0.160	0.303	6.8e-05
UNIPROTKB|G3V529	816	DDX24 "ATP-dependent RNA helic	0.518	0.120	0.303	9.9e-05
UNIPROTKB|Q9GZR7	859	DDX24 "ATP-dependent RNA helic	0.518	0.114	0.303	0.00011
RGD|727929	851	Ddx24 "DEAD (Asp-Glu-Ala-Asp)	0.486	0.108	0.326	0.0002
UNIPROTKB|A6H7B6	852	DDX24 "DDX24 protein" [Bos tau	0.497	0.110	0.320	0.00036

TAIR|locus:2086775 AT3G16840 [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 8.4e-39, P = 8.4e-39
 Identities = 92/187 (49%), Positives = 126/187 (67%)

Query:     1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
             MP V KR+ LARQI +I RK S+E A +TW +++AE++EL +D+ +SEEE V N +Q+KA
Sbjct:   636 MPAVRKRLYLARQIYEIERKGSRENADRTWLKKHAESMELELDDEESEEERVDNVRQRKA 695

Query:    61 TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
             TS +L KL++EL+ +LS P+QPK FS  Y AG GVS L+Q Q  E+ K+K    +   + 
Sbjct:   696 TSARLNKLKEELSTLLSHPMQPKKFSGRYFAGVGVSTLMQNQFVELKKQKQAQMQIGGDI 755

Query:   121 KRRKLVVIGQDCVEPLQALRNAGHEV-HMDGKEMAEKRRNLDSXXXXXXXXXXXXXDQCR 179
             KRRKLVVI Q+C+EPLQALR  G+E+  M G+  AEKRR++ S             DQ R
Sbjct:   756 KRRKLVVINQNCIEPLQALRAGGNEMLKMKGQS-AEKRRDIASLKKKRKEEKIGRRDQRR 814

Query:   180 KQRKKMK 186
              Q+K+ K
Sbjct:   815 NQKKQRK 821

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS

DICTYBASE|DDB_G0281841 ddx24 "DEAD/DEAH box helicase" [Dictyostelium discoideum (taxid:44689)]

 Score = 155 (59.6 bits), Expect = 6.1e-10, P = 6.1e-10
 Identities = 38/134 (28%), Positives = 73/134 (54%)

Query:     1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVD------NYDSEE-EVVK 53
             M  V  R+ LA++IDK+  +  ++  +K+WF++ AE +++ +D      N D E+ E  +
Sbjct:   796 MEGVRDRIELAKEIDKLSHQSLKDNREKSWFKKQAEEMDIELDGDFFGENSDDEQSEDTR 855

Query:    54 NRKQKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPD 113
               +QKK    +LK+L+ +L  +LSR L P+  S+ Y+  + +  L  +     A +    
Sbjct:   856 IAEQKK--QFKLKQLRAQLKHLLSRSLLPRGVSQSYITASAIQELESKSQSSAATDFSNK 913

Query:   114 SKSAIENKRRKLVV 127
             +K+ I  K ++L +
Sbjct:   914 AKNVIGKKAKQLAI 927

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0034496 CG9143 [Drosophila melanogaster (taxid:7227)]

 Score = 136 (52.9 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 33/132 (25%), Positives = 75/132 (56%)

Query:     1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRK---- 56
             M  V +R++LAR +DK   K  + ++++ W +++AE +++++D Y+ E    ++      
Sbjct:   680 MGAVRERVNLARDLDKEELKLKRVQSERGWMKKHAEEMDMIIDGYNDESGSDQDEDPFVI 739

Query:    57 QKKATSMQLKKLQQELNAMLSRPLQPKTFSRHY--LAGAGVSPLLQRQLEEIAKEKLPDS 114
             +++   ++++ ++ +LNA+L++P+ P+ FS  Y     A ++    +   E  K  + D 
Sbjct:   740 ERRRNRLRVETVRAQLNALLAQPIFPRGFSFKYPNSEAAQLATSHTQSAVETMKAAIEDQ 799

Query:   115 KSAIE--NKRRK 124
             K A +  NKR++
Sbjct:   800 KQAKKDRNKRKR 811

GO:0003729 "mRNA binding" evidence=ISS

GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RIC4 DDX24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 34/103 (33%), Positives = 54/103 (52%)

Query:     1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRK---- 56
             M  V +R+ LARQI+K   ++ Q     +W E+ A A+E+     + EEE+ K RK    
Sbjct:   681 MDAVKERIHLARQIEKAEYRNFQACLHNSWIEQAAAALEI-----ELEEEMYKGRKTDQQ 735

Query:    57 QKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLL 99
             +++    Q+K L++EL  +LS+PL        Y   +G  P L
Sbjct:   736 EERRRQKQMKVLKKELRHLLSQPLFKDDLKTKYPTQSGKLPTL 778

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1351337 Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24" [Mus musculus (taxid:10090)]

 Score = 119 (46.9 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 36/111 (32%), Positives = 57/111 (51%)

Query:     1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRK---- 56
             M  V +R+ LARQI+K   ++ Q     +W E+ A A+E+     + EEE+ K  K    
Sbjct:   722 MDVVKERIRLARQIEKAEYRNFQACLHNSWIEQAAAALEI-----ELEEEMYKGGKADQQ 776

Query:    57 QKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSP---LLQRQLE 104
             +++    Q+K L+QEL  +LS+PL  +     Y   +G  P   L  R +E
Sbjct:   777 EERRRQKQMKMLKQELRHLLSQPLFQENLKTRYPTQSGRPPQPVLASRNIE 827

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F5GYL3 DDX24 "ATP-dependent RNA helicase DDX24" [Homo sapiens (taxid:9606)]

 Score = 117 (46.2 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 30/99 (30%), Positives = 56/99 (56%)

Query:     1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
             M  V +R+ LARQI+K   ++ Q     +W E+ A A+E+ ++  D  +    ++++++ 
Sbjct:   472 MDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAAAALEIELEE-DMYKGGKADQQEERR 530

Query:    61 TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLL 99
                Q+K L++EL  +LS+PL  ++    Y   +G  PLL
Sbjct:   531 RQKQMKVLKKELRHLLSQPLFTESQKTKYPTQSGKPPLL 569

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|G3V529 DDX24 "ATP-dependent RNA helicase DDX24" [Homo sapiens (taxid:9606)]

 Score = 117 (46.2 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 30/99 (30%), Positives = 56/99 (56%)

Query:     1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
             M  V +R+ LARQI+K   ++ Q     +W E+ A A+E+ ++  D  +    ++++++ 
Sbjct:   679 MDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAAAALEIELEE-DMYKGGKADQQEERR 737

Query:    61 TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLL 99
                Q+K L++EL  +LS+PL  ++    Y   +G  PLL
Sbjct:   738 RQKQMKVLKKELRHLLSQPLFTESQKTKYPTQSGKPPLL 776

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q9GZR7 DDX24 "ATP-dependent RNA helicase DDX24" [Homo sapiens (taxid:9606)]

 Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
 Identities = 30/99 (30%), Positives = 56/99 (56%)

Query:     1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
             M  V +R+ LARQI+K   ++ Q     +W E+ A A+E+ ++  D  +    ++++++ 
Sbjct:   722 MDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAAAALEIELEE-DMYKGGKADQQEERR 780

Query:    61 TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLL 99
                Q+K L++EL  +LS+PL  ++    Y   +G  PLL
Sbjct:   781 RQKQMKVLKKELRHLLSQPLFTESQKTKYPTQSGKPPLL 819

GO:0003723 "RNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=NAS

GO:0003724 "RNA helicase activity" evidence=NAS

GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|727929 Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24" [Rattus norvegicus (taxid:10116)]

 Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
 Identities = 33/101 (32%), Positives = 53/101 (52%)

Query:     1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRK---- 56
             M  V +R+ LARQI+K   ++ Q     +W E+ A A+E+     + EEE+ K  K    
Sbjct:   716 MDMVKERIRLARQIEKAEYRNFQACLHNSWIEQAAAALEI-----ELEEEMYKGGKADQQ 770

Query:    57 QKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSP 97
             +++    Q+K L+QEL  +LS+PL  +     Y   +G  P
Sbjct:   771 EERRRQKQMKILKQELRHLLSQPLFQENLKTRYPTQSGRPP 811

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

UNIPROTKB|A6H7B6 DDX24 "DDX24 protein" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 0.00036, P = 0.00036
 Identities = 33/103 (32%), Positives = 54/103 (52%)

Query:     1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRK---- 56
             M  V +R+ LARQI+K   ++ Q     +W E+ A A+E+     + EEE+ +  K    
Sbjct:   717 MDAVKERIRLARQIEKAEYRNFQACLHNSWIEQAAAALEI-----ELEEEMYRGGKVDEQ 771

Query:    57 QKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLL 99
             +++    Q+K L++EL  +LS+PL        Y   +G  PLL
Sbjct:   772 EERRRQKQMKILKKELRHLLSQPLFKDDLKTKYPTQSGKLPLL 814

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
KOG0347	731	consensus RNA helicase [RNA processing and modific	99.9

>KOG0347 consensus RNA helicase [RNA processing and modification]

Probab=99.90  E-value=2.1e-24  Score=204.98  Aligned_cols=114  Identities=29%  Similarity=0.504  Sum_probs=96.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhcCccccCCcchHHHHHH----HHHhHHhHHHHHHHHHHHHHHh
Q 029702            1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKN----RKQKKATSMQLKKLQQELNAML   76 (189)
Q Consensus         1 m~~IKeRV~LArqIdk~e~~~~k~k~e~sWlkkAAEeLgIdlDsDd~e~e~~~~----~Kq~k~~k~~lk~LraeLk~LL   76 (189)
                      |++||+||+||++|+++++++.+.+.+++||++||++||||+|+|++++.....    .=+.+..+.+++.||+||+.||
T Consensus       598 m~~lkeRvrLA~ei~~~e~k~~~v~~~~sWlkkaA~el~id~d~d~d~~~~~~~e~~~~me~~~nk~qv~~lRaeL~~lL  677 (731)
T KOG0347|consen  598 MDALKERVRLAREIDKLEIKSKRVRKEESWLKKAADELGIDVDEDEDDIGKSNSETFLKMEKRRNKKQVKALRAELNELL  677 (731)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999999999999999999999999998864322111    1234466888999999999999


Q ss_pred             CCCCCCCCCccccccCCCCchhhHHhHHHHHHhhcCCcchhhhhcccCceeeccc
Q 029702           77 SRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQD  131 (189)
Q Consensus        77 SqPL~~kg~S~kYlT~ggv~~l~~~~~~~L~~~~v~~~~~~~~~k~~~~~viGq~  131 (189)
                      ++||++.|||++|||+|+|+++     ++++.            +++|.++||+|
T Consensus       678 ~~pi~t~~~~~KY~T~~~v~~a-----~~~~~------------~~v~~~~~~id  715 (731)
T KOG0347|consen  678 SQPIRTDGFSTKYLTSGLVNLA-----DSLAK------------SAVHNSIIGID  715 (731)
T ss_pred             ccccccccccccccChhhhhHH-----HHhhh------------hhhhHHHHHHH
Confidence            9999988999999999999443     34444            68999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00