Citrus Sinensis ID: 029703

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV
Secondary Structure (PSIPRED)
ccccccccccHHHHHHccccccccccccccccccHHHccccccccccccccccccccccEEEEEEcccccccccEEEEEcccccHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHcccccccEEEEEEccEEEEEEEccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEHcccccHHHHHHHccccHHcccccEEcccccEEEEEcccccEEEEEEcccccccccEEEEEEccccccccEEEEcEcccHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHcccccccEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTALAAKSSILYQELHRRegkqqfqqpwssgsssclllqknsaffwvdtasrsksarrdvrvealwpdlsrptsvelepindsdhLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLvkrgniskmptiqiwkdgemkseviggHKAWLVIEEVREMIKKFV
Flexible Loop (DISEMBL)
mtalaakssilYQELHRREGKqqfqqpwssgssSCLLLQKNSAFFWVDTasrsksarrdvrvealwpdlsrptsvelepinDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKvskdlvkrgniskmptiqiwkdgemksEVIGGHKAWLVIEEVREMIKKFV
Low Complexity Region (SEG)
MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV
Disordered region (IsUnstruct)
**********************************CLLLQKNSAFFWVDTA*********VRVEALWPD***************DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI****
Disordered Region (DISOPRED)
********SILYQELH***********************************************ALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV
Disordered Region (DISEMBL)
MTALAAKSSILYQELH****************SSCLLLQKNSAFFWVDT*********DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV
Disordered Region (DISPRO)
*TALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q9FG36	210	Thioredoxin-like 3-1, chl	yes	no	0.957	0.861	0.564	5e-55
Q6Z7L3	193	Thioredoxin-like 3-1, chl	yes	no	0.661	0.647	0.640	4e-41
Q8VZT6	192	Thioredoxin-like 3-2, chl	no	no	0.613	0.604	0.612	7e-39
P34723	106	Thioredoxin OS=Penicilliu	no	no	0.439	0.783	0.364	6e-11
Q9SEU6	193	Thioredoxin M4, chloropla	no	no	0.492	0.481	0.326	1e-09
A2YIW7	122	Thioredoxin H-type OS=Ory	N/A	no	0.481	0.745	0.311	6e-09
Q0D840	122	Thioredoxin H1 OS=Oryza s	no	no	0.481	0.745	0.311	6e-09
P48384	172	Thioredoxin M-type, chlor	N/A	no	0.555	0.610	0.309	6e-09
Q7X8R5	180	Thioredoxin M2, chloropla	no	no	0.513	0.538	0.3	9e-09
P29429	110	Thioredoxin OS=Emericella	yes	no	0.518	0.890	0.310	9e-09

>sp|Q9FG36|TRL31_ARATH Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3

 Score =  213 bits (543), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 142/193 (73%), Gaps = 12/193 (6%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSAR--- 57
           M ALA+   +L ++ H   G ++ +Q W   S   L L+K   F  V   S  K  R   
Sbjct: 26  MAALASNPQMLTRQAH---GNKK-EQLWRKES---LNLEKKCGFC-VSVYSNEKLGRSHM 77

Query: 58  -RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLK 116
            ++ R++A W ++++PT++E+EPIN+ + LD +L  A++LSQPI+I+WMASWCRKCIYLK
Sbjct: 78  EKEWRLKAFWSNIAQPTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLK 137

Query: 117 PKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWL 176
           PKLEKLAAE++ + KFYYVDVNKV + LVKRGNISKMPTIQ+WK+ EMK EVIGGHK WL
Sbjct: 138 PKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWL 197

Query: 177 VIEEVREMIKKFV 189
           VIEEVRE+I KFV
Sbjct: 198 VIEEVRELINKFV 210

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z7L3|TRL31_ORYSJ Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774100 PE=2 SV=2

 Score =  167 bits (423), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 104/128 (81%), Gaps = 3/128 (2%)

Query: 60  VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119
           +R EA + D+S+P  VE+E I+  + LD  L  + E  QPI+IDWMASWCRKCIYLKP+L
Sbjct: 67  LRAEAYFWDVSKP--VEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRL 124

Query: 120 EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIE 179
           EK+A EF   ++FY+VDVNKV + +VKRGNI+KMPTIQ+WKDGE  +EVIGGHKAWLV++
Sbjct: 125 EKIAGEF-PGVRFYFVDVNKVPQTVVKRGNITKMPTIQLWKDGEWAAEVIGGHKAWLVMD 183

Query: 180 EVREMIKK 187
           EVREMI+K
Sbjct: 184 EVREMIQK 191

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VZT6|TRL32_ARATH Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1

 Score =  160 bits (404), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 90/116 (77%)

Query: 72  PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLK 131
           P SVEL PI    H DQ++  AQ+L + ++I WMA+WCRKCIYLKPKLEKLAAEF  +L+
Sbjct: 73  PVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLR 132

Query: 132 FYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
           FY+VDVN V   LV R  ++KMPTIQ+W+DG+ ++EVIGGHKA  V+ EVREMI+ 
Sbjct: 133 FYHVDVNAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEN 188

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Arabidopsis thaliana (taxid: 3702)

>sp|P34723|THIO_PENCH Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1

 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 92  RAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           +  + + P+++D+ A+WC  C  + P LEKL +E  T ++FY VDV+++S+     G +S
Sbjct: 15  KVTDATGPVVVDFHATWCGPCKAIAPALEKL-SETHTGIQFYKVDVDELSEVAASNG-VS 72

Query: 152 KMPTIQIWKDGEMKSEVIGGHKAWL 176
            MPT   +K GE   EV G + A +
Sbjct: 73  AMPTFHFYKGGERNEEVKGANPAAI 97

Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions.

Penicillium chrysogenum (taxid: 5076)

>sp|Q9SEU6|TRXM4_ARATH Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 74  SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFY 133
           +VE+  ++DS+   ++L    E   P+L+++ A WC  C  + P +++LA +F  K KFY
Sbjct: 85  AVEVPNLSDSEWQTKVL----ESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFY 140

Query: 134 YVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG 171
            ++ ++ S +   R  I  +PT+ I+K GE K  +IG 
Sbjct: 141 KINTDE-SPNTANRYGIRSVPTVIIFKGGEKKDSIIGA 177

Thiol-disulfide oxidoreductase involved in the redox regulation of enzyme of the oxidative pentose phosphate pathway. Under reducing conditions, inhibits the glucose-6-phosphate dehydrogenase.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YIW7|TRXH_ORYSI Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1

 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 81  NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140
           ++ D  D  + +A+E  + ++ID+ ASWC  C ++ P   + A +F   + F  VDV+++
Sbjct: 12  HNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDEL 70

Query: 141 SKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHK 173
            K++ ++ N+  MPT    KDG    +V+G  K
Sbjct: 71  -KEVAEKYNVEAMPTFLFIKDGAEADKVVGARK 102

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The H form is known to activate a number of cytosolic enzymes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0D840|TRXH1_ORYSJ Thioredoxin H1 OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1

 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 81  NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140
           ++ D  D  + +A+E  + ++ID+ ASWC  C ++ P   + A +F   + F  VDV+++
Sbjct: 12  HNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDEL 70

Query: 141 SKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHK 173
            K++ ++ N+  MPT    KDG    +V+G  K
Sbjct: 71  -KEVAEKYNVEAMPTFLFIKDGAEADKVVGARK 102

Thiol-disulfide oxidoreductase involved in the redox regulation of MAP kinases. Under reducing conditions, inhibits MPK1 and MPK5 kinase activities. Mediates its own transport from cell-to-cell through plasmodesmata. Possesses insulin disulfide bonds reducing activity.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P48384|TRXM_PEA Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1

 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 63/110 (57%), Gaps = 5/110 (4%)

Query: 76  ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
           E++ +NDS   D++++ ++    P+L+D+ A WC  C  + P +++LA E+  K+K Y +
Sbjct: 68  EVQVVNDSS-WDELVIGSE---TPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKL 123

Query: 136 DVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185
           + ++      K G I  +PT+  +K+GE K  VIG      + E+V + I
Sbjct: 124 NTDESPNTATKYG-IRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The M form is known to activate NADP-malate dehydrogenase.

Pisum sativum (taxid: 3888)

>sp|Q7X8R5|TRXM2_ORYSJ Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0530600 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 3/100 (3%)

Query: 88  QILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR 147
           Q L+   EL  P+L+ + A+WC  C  + P + KL+ E++ KLK Y ++ ++ + D+  +
Sbjct: 84  QSLVMESEL--PVLVGYWATWCGPCKMIDPVVGKLSKEYEGKLKCYKLNTDE-NPDIASQ 140

Query: 148 GNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
             +  +PT+ I+K+GE K  VIG      +I  + + +++
Sbjct: 141 YGVRSIPTMMIFKNGEKKDAVIGAVPESTLIASIEKFVER 180

Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of chloroplastic enzymes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29429|THIO_EMENI Thioredoxin OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=TRX1 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 74  SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFY 133
           S  + PI       + +L A+     +++D  A+WC  C  + P +EK A  + T   FY
Sbjct: 4   SEHVPPITSKAEFQEKVLNAKGF---VVVDCFATWCGPCKAIAPTVEKFAQTY-TDASFY 59

Query: 134 YVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWL 176
            +DV+++S+   + G I  MPT  ++KDG+  S+V+G +   L
Sbjct: 60  QIDVDELSEVAAELG-IRAMPTFLLFKDGQKVSDVVGANPGAL 101

Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
224138110	194	predicted protein [Populus trichocarpa]	0.994	0.969	0.666	2e-67
225441487	185	PREDICTED: thioredoxin-like 3-1, chlorop	0.968	0.989	0.643	6e-65
357509993	187	Thioredoxin-like protein [Medicago trunc	0.984	0.994	0.642	9e-63
356572122	188	PREDICTED: thioredoxin-like 3-1, chlorop	0.989	0.994	0.615	3e-61
255587723	190	electron transporter, putative [Ricinus	0.920	0.915	0.654	8e-61
388492072	187	unknown [Lotus japonicus]	0.978	0.989	0.628	9e-61
358248052	189	uncharacterized protein LOC100783648 [Gl	0.989	0.989	0.612	9e-61
359482166	179	PREDICTED: thioredoxin-like 3-1, chlorop	0.936	0.988	0.612	3e-59
449457313	176	PREDICTED: thioredoxin-like 3-1, chlorop	0.899	0.965	0.619	2e-58
357509989	181	Thioredoxin-like protein [Medicago trunc	0.952	0.994	0.610	5e-57

>gi|224138110|ref|XP_002322732.1| predicted protein [Populus trichocarpa] gi|222867362|gb|EEF04493.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 158/195 (81%), Gaps = 7/195 (3%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGS-SSCLLLQKNSAFF--WVDTASRS---K 54
           M+ LAA   +LY+E+      QQ QQ WS G   S LLL + ++F   W D  ++    K
Sbjct: 1   MSVLAANPHVLYREVQYHNKDQQ-QQLWSGGGVGSSLLLSQRTSFGCSWFDGRNKDLCKK 59

Query: 55  SARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIY 114
           +++RD++V A WP ++RPTSVE+EPI+DS HLD+ILL+A ELSQPI+IDWMASWCRKCIY
Sbjct: 60  NSKRDLKVAASWPGMTRPTSVEMEPIDDSHHLDKILLQAHELSQPIIIDWMASWCRKCIY 119

Query: 115 LKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA 174
           LKPKLEKLAAE+DTK+KFY VDVNKV + LVKRGNISKMPTIQ+WKDGEMK+EVIGGHKA
Sbjct: 120 LKPKLEKLAAEYDTKIKFYCVDVNKVPQALVKRGNISKMPTIQLWKDGEMKAEVIGGHKA 179

Query: 175 WLVIEEVREMIKKFV 189
           WLV+EEVREMI+KFV
Sbjct: 180 WLVMEEVREMIQKFV 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441487|ref|XP_002275794.1| PREDICTED: thioredoxin-like 3-1, chloroplastic isoform 1 [Vitis vinifera]

 Score =  252 bits (643), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 123/191 (64%), Positives = 149/191 (78%), Gaps = 8/191 (4%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDT--ASRSKSARR 58
           M+ LAA + I+Y+E+  R+ + Q      SG  SCL   ++  F  VD       K+ +R
Sbjct: 1   MSILAANTHIVYREVLLRDPQNQL-----SGGGSCLFWSRSPGFG-VDGRRGEWRKTKKR 54

Query: 59  DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK 118
           D RVEA WPD++RP  +E++PI D D LDQIL RAQEL QPI+IDWMA+WCRKCIYLKPK
Sbjct: 55  DFRVEAFWPDMTRPNVIEMQPIKDCDQLDQILARAQELPQPIIIDWMAAWCRKCIYLKPK 114

Query: 119 LEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI 178
           LEKLAAE+DTK+KFY VDVN VS+ LVKRGNI+KMPTIQ+WKDGEMK+EVIGGHKAW+VI
Sbjct: 115 LEKLAAEYDTKIKFYSVDVNNVSQALVKRGNITKMPTIQLWKDGEMKAEVIGGHKAWIVI 174

Query: 179 EEVREMIKKFV 189
           +EVREMIKKFV
Sbjct: 175 DEVREMIKKFV 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509993|ref|XP_003625285.1| Thioredoxin-like protein [Medicago truncatula] gi|355500300|gb|AES81503.1| Thioredoxin-like protein [Medicago truncatula]

 Score =  244 bits (624), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 122/190 (64%), Positives = 150/190 (78%), Gaps = 4/190 (2%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARR-D 59
           M+ +   S  LY+E++ R+ +Q   Q ++SG  S  LL + S F  +    + K  RR +
Sbjct: 1   MSIIGTYSHFLYKEVYHRD-EQCIPQCFASGRDS--LLCRKSCFGNIIRIEKQKKIRRKN 57

Query: 60  VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119
           +RVEA+WPDLSRP+SVE+E I+DS+ LDQIL+ AQ+ S+PILIDWMA+WCRKCIYLKPKL
Sbjct: 58  LRVEAMWPDLSRPSSVEMEAIHDSEQLDQILVHAQQNSEPILIDWMAAWCRKCIYLKPKL 117

Query: 120 EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIE 179
           EKLAAEFDTK KFYYVDVNKV + LVKRG ISKMPTIQ+WKDGEMK EVIGGHK WLVIE
Sbjct: 118 EKLAAEFDTKAKFYYVDVNKVPQTLVKRGKISKMPTIQLWKDGEMKEEVIGGHKGWLVIE 177

Query: 180 EVREMIKKFV 189
           EVREMI+ ++
Sbjct: 178 EVREMIQNYI 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572122|ref|XP_003554219.1| PREDICTED: thioredoxin-like 3-1, chloroplastic-like isoform 2 [Glycine max]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/190 (61%), Positives = 146/190 (76%), Gaps = 3/190 (1%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDT-ASRSKSARRD 59
           M+ + A S  LY E+++++  QQ  Q   SG       + +    WV +  S  K  RR+
Sbjct: 1   MSVIGAYSHFLYGEVYQKD--QQCPQYLVSGRGYLFSHKSSCGSIWVGSRKSEGKIKRRN 58

Query: 60  VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119
           +RVEA+WPDLSRP  +E+E I+DS+ LDQIL+ AQ+ SQPILIDWMA+WCRKCIYLKPKL
Sbjct: 59  LRVEAMWPDLSRPNELEMEEISDSEQLDQILVHAQQNSQPILIDWMATWCRKCIYLKPKL 118

Query: 120 EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIE 179
           EKLA E+  K KFY+VDVNKV + LVKRGNISKMPTIQ+WKDGEMK+EVIGGHKAWLV+E
Sbjct: 119 EKLAPEYHNKAKFYFVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVME 178

Query: 180 EVREMIKKFV 189
           EVREMI+K++
Sbjct: 179 EVREMIQKYL 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587723|ref|XP_002534371.1| electron transporter, putative [Ricinus communis] gi|223525411|gb|EEF28009.1| electron transporter, putative [Ricinus communis]

 Score =  238 bits (607), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 121/185 (65%), Positives = 148/185 (80%), Gaps = 11/185 (5%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQ-KNSAFFWV----DTASRSKS 55
           M++LAA S ILY+E++ +  +QQ  Q WSS  S CLLLQ +NS  + +     T S  K 
Sbjct: 1   MSSLAANSHILYREVYNQRDQQQQHQLWSSSGSCCLLLQQRNSGCYNLFDCKKTRSFKKI 60

Query: 56  ARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYL 115
           ++RD+RVEA WPD++RPTS+E+EPINDSD LDQILL+AQELSQP+LIDWMA+WCRKCIYL
Sbjct: 61  SKRDLRVEAFWPDMTRPTSIEMEPINDSDQLDQILLKAQELSQPVLIDWMAAWCRKCIYL 120

Query: 116 KPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAW 175
           KPKLEKLA EFDTK+K Y VDVNKVS+ LVKRGNIS      +WKDGEMK+E++GGHK W
Sbjct: 121 KPKLEKLAFEFDTKIKIYSVDVNKVSQSLVKRGNIS------LWKDGEMKAEIVGGHKGW 174

Query: 176 LVIEE 180
           LV+EE
Sbjct: 175 LVVEE 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492072|gb|AFK34102.1| unknown [Lotus japonicus]

 Score =  238 bits (607), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 147/191 (76%), Gaps = 6/191 (3%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNS-AFFWVDTASR-SKSARR 58
           M+ + A S  LY + H+R+ +      +  GS  CL   K+      +   SR  K  +R
Sbjct: 1   MSVIGACSHFLYGDFHQRDEQSPL---YLVGSRGCLFPSKSGCGNSLIQRKSREGKIRKR 57

Query: 59  DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK 118
           ++RVEA+W D+SRP++VEL PINDS+ LDQIL+RAQ+ S+PI+IDWMASWCRKCIYL+PK
Sbjct: 58  NLRVEAMW-DISRPSTVELIPINDSEQLDQILVRAQQNSEPIIIDWMASWCRKCIYLQPK 116

Query: 119 LEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI 178
           LEKLAAEFDTK+ FY VDVNKV + LVKRGNISKMPTIQ+WKDGEMK EVIGGHK WLVI
Sbjct: 117 LEKLAAEFDTKVSFYCVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKEEVIGGHKGWLVI 176

Query: 179 EEVREMIKKFV 189
           EEVREMI+KF+
Sbjct: 177 EEVREMIQKFI 187

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248052|ref|NP_001239801.1| uncharacterized protein LOC100783648 [Glycine max] gi|255640849|gb|ACU20707.1| unknown [Glycine max]

 Score =  238 bits (607), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 143/191 (74%), Gaps = 4/191 (2%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKS--ARR 58
           M+ + A S  LY E+++R+  QQ  Q   SG       +      WV +         RR
Sbjct: 1   MSVIGAYSHFLYGEVYQRD--QQCPQYLVSGRGYFFSHKSGCGNIWVGSRKSEGKIIKRR 58

Query: 59  DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK 118
           + RVEA+WPDLSRP+ +E+E INDS+ LDQIL+ AQ+ SQPILIDWMA+WCRKCIYLKPK
Sbjct: 59  NFRVEAMWPDLSRPSELEMEEINDSEQLDQILVHAQQNSQPILIDWMATWCRKCIYLKPK 118

Query: 119 LEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI 178
           LEKLA E+  K+KFY+VDVNKV + LVKRGNISKMPTIQ+WKDGEMK EVIGGHKAWLVI
Sbjct: 119 LEKLAPEYQDKVKFYFVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKEEVIGGHKAWLVI 178

Query: 179 EEVREMIKKFV 189
           EEV+EMI+K++
Sbjct: 179 EEVKEMIQKYL 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482166|ref|XP_003632721.1| PREDICTED: thioredoxin-like 3-1, chloroplastic isoform 2 [Vitis vinifera]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 143/191 (74%), Gaps = 14/191 (7%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDT--ASRSKSARR 58
           M+ LAA + I+Y+E+  R+ + Q      SG  SCL   ++  F  VD       K+ +R
Sbjct: 1   MSILAANTHIVYREVLLRDPQNQL-----SGGGSCLFWSRSPGFG-VDGRRGEWRKTKKR 54

Query: 59  DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK 118
           D RVEA WPD++RP  +E++PI D D LDQIL RAQEL QPI+IDWMA+WCRKCIYLKPK
Sbjct: 55  DFRVEAFWPDMTRPNVIEMQPIKDCDQLDQILARAQELPQPIIIDWMAAWCRKCIYLKPK 114

Query: 119 LEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI 178
           LEKLAAE+DTK+KFY VDVN VS+ LVKRGNI+      +WKDGEMK+EVIGGHKAW+VI
Sbjct: 115 LEKLAAEYDTKIKFYSVDVNNVSQALVKRGNIT------LWKDGEMKAEVIGGHKAWIVI 168

Query: 179 EEVREMIKKFV 189
           +EVREMIKKFV
Sbjct: 169 DEVREMIKKFV 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457313|ref|XP_004146393.1| PREDICTED: thioredoxin-like 3-1, chloroplastic-like [Cucumis sativus]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 140/192 (72%), Gaps = 22/192 (11%)

Query: 1   MTALAAKSS-ILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRD 59
           M+ L A +S ILY  LH        Q  + + +  C  L  +               RR+
Sbjct: 1   MSVLGASTSHILYPPLH--------QHHFLTNAKRCSFLSTDFG----------DHRRRE 42

Query: 60  VRVEA---LWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLK 116
           +R++A    WPDLSRP SVE+E I+DSD LD+IL+ AQ LSQPILIDWMA+WCRKCIYLK
Sbjct: 43  LRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLK 102

Query: 117 PKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWL 176
           PKLEKLAA++ TK KFYYVDVNKV + LVKRGNISKMPTIQ+WKDGEMK+EVIGGHKAWL
Sbjct: 103 PKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWL 162

Query: 177 VIEEVREMIKKF 188
           VIEEVREMI+KF
Sbjct: 163 VIEEVREMIQKF 174

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509989|ref|XP_003625283.1| Thioredoxin-like protein [Medicago truncatula] gi|217071534|gb|ACJ84127.1| unknown [Medicago truncatula] gi|355500298|gb|AES81501.1| Thioredoxin-like protein [Medicago truncatula]

 Score =  225 bits (574), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 144/190 (75%), Gaps = 10/190 (5%)

Query: 1   MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARR-D 59
           M+ +   S  LY+E++ R+ +Q   Q ++SG  S  LL + S F  +    + K  RR +
Sbjct: 1   MSIIGTYSHFLYKEVYHRD-EQCIPQCFASGRDS--LLCRKSCFGNIIRIEKQKKIRRKN 57

Query: 60  VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119
           +RVEA+WPDLSRP+SVE+E I+DS+ LDQIL+ AQ+ S+PILIDWMA+WCRKCIYLKPKL
Sbjct: 58  LRVEAMWPDLSRPSSVEMEAIHDSEQLDQILVHAQQNSEPILIDWMAAWCRKCIYLKPKL 117

Query: 120 EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIE 179
           EKLAAEFDTK KFYYVDVNKV + LVKRG IS      +WKDGEMK EVIGGHK WLVIE
Sbjct: 118 EKLAAEFDTKAKFYYVDVNKVPQTLVKRGKIS------LWKDGEMKEEVIGGHKGWLVIE 171

Query: 180 EVREMIKKFV 189
           EVREMI+ ++
Sbjct: 172 EVREMIQNYI 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2146693	192	WCRKC2 "WCRKC thioredoxin 2" [	0.608	0.598	0.617	5.7e-36
TAIR|locus:2170174	214	WCRKC1 "WCRKC thioredoxin 1" [	0.756	0.668	0.503	4.6e-34
TAIR|locus:2090126	193	TRX-M4 "thioredoxin M-type 4"	0.841	0.823	0.282	2.8e-11
UNIPROTKB|P07591	181	P07591 "Thioredoxin M-type, ch	0.613	0.640	0.278	7.4e-11
CGD|CAL0000819	103	TRX1 [Candida albicans (taxid:	0.433	0.796	0.356	2.5e-10
UNIPROTKB|Q5ACN1	103	TRX1 "Thioredoxin" [Candida al	0.433	0.796	0.356	2.5e-10
UNIPROTKB|Q0D840	122	TRXH "Thioredoxin H1" [Oryza s	0.481	0.745	0.311	4.1e-10
TAIR|locus:2128756	186	ATHM2 [Arabidopsis thaliana (t	0.507	0.516	0.297	4.1e-10
SGD|S000003441	104	TRX2 "Cytoplasmic thioredoxin	0.476	0.865	0.294	8.4e-10
ASPGD|ASPL0000027728	108	AN8571 [Emericella nidulans (t	0.497	0.870	0.303	1.1e-09

TAIR|locus:2146693 WCRKC2 "WCRKC thioredoxin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query:    72 PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLK 131
             P SVEL PI    H DQ++  AQ+L + ++I WMA+WCRKCIYLKPKLEKLAAEF  +L+
Sbjct:    73 PVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLR 132

Query:   132 FYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIK 186
             FY+VDVN V   LV R  ++KMPTIQ+W+DG+ ++EVIGGHKA  V+ EVREMI+
Sbjct:   133 FYHVDVNAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIE 187

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2170174 WCRKC1 "WCRKC thioredoxin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 78/155 (50%), Positives = 108/155 (69%)

Query:     1 MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSAR--- 57
             M ALA+   +L ++ H   G ++ +Q W   S   L L+K   F  V   S  K  R   
Sbjct:    26 MAALASNPQMLTRQAH---GNKK-EQLWRKES---LNLEKKCGFC-VSVYSNEKLGRSHM 77

Query:    58 -RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLK 116
              ++ R++A W ++++PT++E+EPIN+ + LD +L  A++LSQPI+I+WMASWCRKCIYLK
Sbjct:    78 EKEWRLKAFWSNIAQPTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLK 137

Query:   117 PKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
             PKLEKLAAE++ + KFYYVDVNKV + LVKRGNIS
Sbjct:   138 PKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNIS 172

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2090126 TRX-M4 "thioredoxin M-type 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 48/170 (28%), Positives = 81/170 (47%)

Query:     1 MTALAAKSSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDV 60
             + A  + SS       RR    +F +     SS  L+ Q  S       A+R     R  
Sbjct:    18 IAASVSSSSAAPSVSRRRISPARFLEFRGLKSSRSLVTQSASL-----GANRRTRIARGG 72

Query:    61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLE 120
             R+     D +   +VE+  ++DS+   ++L    E   P+L+++ A WC  C  + P ++
Sbjct:    73 RIACEAQDTTA-AAVEVPNLSDSEWQTKVL----ESDVPVLVEFWAPWCGPCRMIHPIVD 127

Query:   121 KLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIG 170
             +LA +F  K KFY ++ ++ S +   R  I  +PT+ I+K GE K  +IG
Sbjct:   128 QLAKDFAGKFKFYKINTDE-SPNTANRYGIRSVPTVIIFKGGEKKDSIIG 176

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IGI

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0006109 "regulation of carbohydrate metabolic process" evidence=IDA

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

UNIPROTKB|P07591 P07591 "Thioredoxin M-type, chloroplastic" [Spinacia oleracea (taxid:3562)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 34/122 (27%), Positives = 66/122 (54%)

Query:    49 TASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASW 108
             ++S S S+ R  R  ++    S     E++ +NDS   + +L    E   P+++D+ A W
Sbjct:    49 SSSVSSSSPRQFRYSSVVCKASEAVK-EVQDVNDSSWKEFVL----ESEVPVMVDFWAPW 103

Query:   109 CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEV 168
             C  C  + P +++LA E+  K+  Y ++ ++ +  +  + NI  +PT+  +K+GE K  +
Sbjct:   104 CGPCKLIAPVIDELAKEYSGKIAVYKLNTDE-APGIATQYNIRSIPTVLFFKNGERKESI 162

Query:   169 IG 170
             IG
Sbjct:   163 IG 164

GO:0005515 "protein binding" evidence=IPI

CGD|CAL0000819 TRX1 [Candida albicans (taxid:5476)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 31/87 (35%), Positives = 53/87 (60%)

Query:    88 QILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR 147
             Q LL+   L   +++D+ A+WC  C  + P LEK   E+ + +KF  +DV+++   L + 
Sbjct:    12 QTLLKENNL---VIVDFFATWCGPCKMIAPLLEKFQNEY-SNIKFLKIDVDQLGS-LAQE 66

Query:   148 GNISKMPTIQIWKDGEMKSEVIGGHKA 174
              N+S MPT+ ++K+GE  + VIG + A
Sbjct:    67 YNVSSMPTLILFKNGEEVNRVIGANPA 93

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900429 "negative regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0000324 "fungal-type vacuole" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0034614 "cellular response to reactive oxygen species" evidence=IEA

GO:0006275 "regulation of DNA replication" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0080058 "protein deglutathionylation" evidence=IEA

GO:0000011 "vacuole inheritance" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q5ACN1 TRX1 "Thioredoxin" [Candida albicans SC5314 (taxid:237561)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 31/87 (35%), Positives = 53/87 (60%)

Query:    88 QILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR 147
             Q LL+   L   +++D+ A+WC  C  + P LEK   E+ + +KF  +DV+++   L + 
Sbjct:    12 QTLLKENNL---VIVDFFATWCGPCKMIAPLLEKFQNEY-SNIKFLKIDVDQLGS-LAQE 66

Query:   148 GNISKMPTIQIWKDGEMKSEVIGGHKA 174
              N+S MPT+ ++K+GE  + VIG + A
Sbjct:    67 YNVSSMPTLILFKNGEEVNRVIGANPA 93

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900429 "negative regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

UNIPROTKB|Q0D840 TRXH "Thioredoxin H1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 29/93 (31%), Positives = 53/93 (56%)

Query:    81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140
             ++ D  D  + +A+E  + ++ID+ ASWC  C ++ P   + A +F   + F  VDV+++
Sbjct:    12 HNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDEL 70

Query:   141 SKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHK 173
              K++ ++ N+  MPT    KDG    +V+G  K
Sbjct:    71 -KEVAEKYNVEAMPTFLFIKDGAEADKVVGARK 102

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA;TAS

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

TAIR|locus:2128756 ATHM2 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 30/101 (29%), Positives = 59/101 (58%)

Query:    70 SRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
             ++ T+ +++ +NDS   D ++L+A   + P+++D+ A WC  C  + P +  LA  +  K
Sbjct:    75 AQETTTDIQVVNDSTW-DSLVLKA---TGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGK 130

Query:   130 LKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIG 170
             +KFY ++ ++ S +   +  +  +PTI I+  GE K  +IG
Sbjct:   131 IKFYKLNTDE-SPNTPGQYGVRSIPTIMIFVGGEKKDTIIG 170

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IGI

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

SGD|S000003441 TRX2 "Cytoplasmic thioredoxin isoenzyme" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 28/95 (29%), Positives = 54/95 (56%)

Query:    80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
             +  +   D  L    +L   +++D+ A+WC  C  + P +EK A ++ +   FY +DV++
Sbjct:     5 LKSASEYDSALASGDKL---VVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDE 60

Query:   140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA 174
             VS D+ ++  +S MPT+  +K G+  + V+G + A
Sbjct:    61 VS-DVAQKAEVSSMPTLIFYKGGKEVTRVVGANPA 94

GO:0000324 "fungal-type vacuole" evidence=IPI

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0080058 "protein deglutathionylation" evidence=IGI;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000011 "vacuole inheritance" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

GO:0045454 "cell redox homeostasis" evidence=IEA;TAS

GO:0042144 "vacuole fusion, non-autophagic" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=IGI

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

ASPGD|ASPL0000027728 AN8571 [Emericella nidulans (taxid:162425)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 31/102 (30%), Positives = 59/102 (57%)

Query:    89 ILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRG 148
             ++ +A   S P+++D+ A+WC  C  + P + K +  + T +KF  VDV+K ++ + +  
Sbjct:    13 VIFKALVSSGPVVVDFFATWCGPCKAVAPVVGKFSETY-TGVKFLQVDVDK-ARSIAQEH 70

Query:   149 NISKMPTIQIWKDGE-MKSEVIGGHKAWLVIEEVREMIKKFV 189
              I  MPT  ++KDG+ +   V+GG+     ++E+ E IK  +
Sbjct:    71 QIRAMPTFVLYKDGKPLDKRVVGGN-----MKELEEGIKSII 107

GO:0006139 "nucleobase-containing compound metabolic process" evidence=RCA

GO:0004126 "cytidine deaminase activity" evidence=RCA

GO:0019863 "IgE binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Z7L3	TRL31_ORYSJ	No assigned EC number	0.6406	0.6613	0.6476	yes	no
Q9FG36	TRL31_ARATH	No assigned EC number	0.5647	0.9576	0.8619	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	189
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	7e-20
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	3e-16
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	2e-13
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	2e-12
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	6e-12
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	1e-09
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	6e-09
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	8e-09
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	1e-07
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	3e-07
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	2e-06
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	2e-06
cd02957	113	cd02957, Phd_like, Phosducin (Phd)-like family; co	6e-06
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	7e-06
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	2e-05
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	1e-04
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	5e-04
PRK00293	571	PRK00293, dipZ, thiol:disulfide interchange protei	9e-04
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	0.001
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	0.002
cd02989	113	cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like fam	0.003
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	0.003

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 79.5 bits (197), Expect = 7e-20
 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 6/90 (6%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
           ++P+++D+ A WC  C  + P LE+LA E+  K+KF  VDV++ + +L +   +  +PT 
Sbjct: 10  AKPVVVDFWAPWCGPCKAIAPVLEELAEEYP-KVKFVKVDVDE-NPELAEEYGVRSIPTF 67

Query: 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIK 186
             +K+G+    V+G        EE+ E ++
Sbjct: 68  LFFKNGKEVDRVVGADPK----EELEEFLE 93

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 70.3 bits (173), Expect = 3e-16
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            +P+L+D+ A WC  C  L P+ EKLA E+   +KF  VD ++ + DL     +   PTI
Sbjct: 18  DKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADE-NPDLASEYGVRGFPTI 76

Query: 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
           + +K+G+  S+ +G        +++   IKK
Sbjct: 77  KFFKNGKKVSDYVGARTK----DDLVAFIKK 103

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 63.1 bits (154), Expect = 2e-13
 Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQI 158
           P+L+D+ A WC  C  + P LE+LA E++ K+KF  ++V++   D+  +  I  +PT+ +
Sbjct: 16  PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP-DIAAKYGIRSIPTLLL 74

Query: 159 WKDGEMKSEVIG 170
           +K+G+     +G
Sbjct: 75  FKNGKEVDRSVG 86

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A WC  C  + P  E+ + E+ TK+ F  VDV+++S ++ ++ NI+ MPT +++
Sbjct: 21  VIVDFYAEWCGPCKRIAPFYEECSKEY-TKMVFVKVDVDELS-EVAEKENITSMPTFKVF 78

Query: 160 KDGEMKSEVIGGHKAWL 176
           K+G +   ++G +   L
Sbjct: 79  KNGSVVDTLLGANDEAL 95

Length = 98

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 59.9 bits (144), Expect = 6e-12
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 9/120 (7%)

Query: 72  PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLK 131
            T+   E ++ +      L       +P+L+D+ A WC  C    P LE+LA E+   ++
Sbjct: 12  ATAASFEELDGAPLSLSELK-----GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVE 66

Query: 132 FYYVDVNKVSKDLVKR--GNISKMPTIQIWKDGEMKSEVIGGHK--AWLVIEEVREMIKK 187
              V+V+  + DL       +  +PT+ ++KDG+    ++GG       +I+ + E++ +
Sbjct: 67  VVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVLPKEALIDALGELLAR 126

Length = 127

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 95  ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMP 154
           E  + IL+ + +  C  C  LKP L K+  EFD  + F  +D+++  +++ +   I   P
Sbjct: 11  ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGIMGTP 69

Query: 155 TIQIWKDGEMKSEVIG 170
           T+Q +KD E+  E+ G
Sbjct: 70  TVQFFKDKELVKEISG 85

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           + +++  +Q ++++     P+L+D+ A WC  C  L P LEKLAAE+  K K   V+ + 
Sbjct: 28  VTEAN-FEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA 85

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
               +  +  +  +PT+  +KDG+      G         ++R+ + K +
Sbjct: 86  -EPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPE----SQLRQFLDKVL 130

Length = 304

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 6/88 (6%)

Query: 78  EPIN-DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136
           E IN   + LD++L    +   P++ID+ A WC  C    P  E +AAE   K++F  V+
Sbjct: 36  EVINATGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVN 91

Query: 137 VNKVSKDLVKRGNISKMPTIQIWKDGEM 164
             +  ++L  R  I  +PTI I+K+G++
Sbjct: 92  -TEAERELSARFRIRSIPTIMIFKNGQV 118

Length = 139

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGNISKMPT 155
           S+ +L+++ A WC  C  L P+ EKLA E     K     V+   + DL     +   PT
Sbjct: 15  SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPT 74

Query: 156 IQIWKDGEMKSEVIGGHK 173
           I+++ +G  +     G +
Sbjct: 75  IKLFPNGSKEPVKYEGPR 92

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A       L+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 11  DSFDTDVLKADGAI---LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 67

Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIGG 171
             K G I  +PT+ ++K+GE+ +  +G 
Sbjct: 68  APKYG-IRGIPTLLLFKNGEVAATKVGA 94

Length = 109

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF------DTKLKFYYV 135
            S ++D IL    + ++ +L+++ A WCR    L P  E+ AA+         K+ +  V
Sbjct: 7   TSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKV 62

Query: 136 DVNKVSKDLVKRGNISKMPTIQIWKDGEM 164
           D +K S D+  R  I+K PT++++++G M
Sbjct: 63  DCDKES-DIADRYRINKYPTLKLFRNGMM 90

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            +L+++ A WC  C  L P+ EKLA E   D  +    VD     KDL  R  +S  PTI
Sbjct: 15  DVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDAT-AEKDLASRFGVSGFPTI 73

Query: 157 QIWKDGEMKSEVIGGHKAWLVIEEVRE 183
           + +  G+   +  GG     ++E V E
Sbjct: 74  KFFPKGKKPVDYEGGRDLEAIVEFVNE 100

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239255 cd02957, Phd_like, Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 109 CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEV 168
             +C  L   LE+LAA++  + KF  ++  K    LV   +I  +PT+ ++K+GE+   +
Sbjct: 36  FPRCKILDSHLEELAAKY-PETKFVKINAEKA--FLVNYLDIKVLPTLLVYKNGELIDNI 92

Query: 169 IG 170
           +G
Sbjct: 93  VG 94

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Also included in this family is a PhLP characterized as a viral inhibitor of apoptosis (IAP)-associated factor, named VIAF, that functions in caspase activation during apoptosis. Length = 113

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY--VDVNKVSKDLVK-RGNISKMPT 155
            +L+ + A WC  C  +KP+  K A E     K     VD  K   D +K   N+   PT
Sbjct: 19  HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPT 78

Query: 156 IQIWKDGEMKSEVIGGHKA 174
            + +++G+   +  G   A
Sbjct: 79  FKYFENGKFVEKYEGERTA 97

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 75  VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKF 132
           VEL   N    +           + +L+++ A WC  C  L P+ EKLAA F  +  +  
Sbjct: 3   VELTDSNFDKVVGDD-------KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVI 55

Query: 133 YYVDVNKVSKDLVKRGNISKMPTIQ 157
             VD ++ +KDL K+  +S  PT++
Sbjct: 56  AKVDADEANKDLAKKYGVSGFPTLK 80

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-VSKDLVKRGNISKMPTIQI 158
           L+++ A WC  C  LKP+  K A E D  ++   VD ++  +K L  +  +   PT+++
Sbjct: 22  LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 87  DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK 146
             +    Q    P+++D+ A        L P LE+LA E+  +     V+ +     + +
Sbjct: 5   QVLQESTQ---VPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD-AQPQIAQ 60

Query: 147 RGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185
           +  +  +PT+ ++  G+      G        E++R+M+
Sbjct: 61  QFGVQALPTVYLFAAGQPVDGFQGAQPE----EQLRQML 95

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|234717 PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional

 Score = 39.0 bits (92), Expect = 9e-04
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 72  PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKC 112
              +  + I     LDQ L  A+   +P+++D  A WC  C
Sbjct: 449 QAHLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVAC 489

Length = 571

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 75  VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY 134
           VEL   N     D+ +L + ++    L+++ A WC  C  L P+ +K A      +K   
Sbjct: 3   VELTDSN----FDKKVLNSDDV---WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGA 55

Query: 135 VDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSE 167
           VD + V + L ++  +   PTI+++  G+   +
Sbjct: 56  VDAD-VHQSLAQQYGVRGFPTIKVFGAGKNSPQ 87

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160
           L+D+ A WC  C  L P+L K A     K+K   VD  K  + L ++ NI   PTI+++ 
Sbjct: 23  LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-YESLCQQANIRAYPTIRLYP 81

Query: 161 DGEMKSEVIGGH 172
               K     G 
Sbjct: 82  GNASKYHSYNGW 93

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239287 cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 111 KCIYLKPKLEKLAAE-FDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVI 169
           +C  +   LE LA +  +TK  F  V+  K +  LV++ NI  +PT+ ++K+G+    ++
Sbjct: 36  RCKIMDKHLEILAKKHLETK--FIKVNAEK-APFLVEKLNIKVLPTVILFKNGKTVDRIV 92

Query: 170 G 170
           G
Sbjct: 93  G 93

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. Length = 113

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
           +L+++ A WC  C  L P+ EK A E       +K   VD     KDL ++  +S  PT+
Sbjct: 21  VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT-EEKDLAQKYGVSGYPTL 79

Query: 157 QIWKDGE 163
           +I+++GE
Sbjct: 80  KIFRNGE 86

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.95
PHA02278	103	thioredoxin-like protein	99.92
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.92
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.91
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.91
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.91
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.91
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.91
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.91
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.91
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.91
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.9
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.9
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.9
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.89
PRK10996	139	thioredoxin 2; Provisional	99.89
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.89
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.89
PRK09381	109	trxA thioredoxin; Provisional	99.88
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.88
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.87
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.87
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.87
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.86
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.86
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.86
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.86
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.86
PTZ00051	98	thioredoxin; Provisional	99.86
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.86
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.86
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.85
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.85
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.85
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.85
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.85
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.84
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.84
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.84
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.83
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.83
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.81
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.81
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.81
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.81
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.8
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.79
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.79
PTZ00102	477	disulphide isomerase; Provisional	99.79
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.78
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.78
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.77
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.77
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.77
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.75
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.75
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.75
PTZ00102	477	disulphide isomerase; Provisional	99.75
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.74
PTZ00062	204	glutaredoxin; Provisional	99.74
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.74
PLN02309	457	5'-adenylylsulfate reductase	99.73
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.71
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.71
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.69
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.69
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.69
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.69
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.68
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.66
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.63
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.61
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.6
PHA02125	75	thioredoxin-like protein	99.59
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.59
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.58
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.58
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.58
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.57
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.56
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.55
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.54
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.52
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.51
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.51
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.51
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.49
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.49
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.47
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.46
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.44
smart00594	122	UAS UAS domain.	99.43
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.42
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.41
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.41
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.41
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.4
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.36
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.36
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.35
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.34
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.32
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.32
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.26
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.26
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.25
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	99.23
PLN02412	167	probable glutathione peroxidase	99.2
PTZ00056	199	glutathione peroxidase; Provisional	99.19
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	99.18
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	99.12
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.12
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.11
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	99.1
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.07
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.02
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.0
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.99
KOG1672	211	consensus ATP binding protein [Posttranslational m	98.99
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.99
PTZ00256	183	glutathione peroxidase; Provisional	98.97
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.92
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.92
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.89
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.89
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.89
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.88
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.85
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.85
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.84
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.84
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.84
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.82
PF13728	215	TraF: F plasmid transfer operon protein	98.81
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.79
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	98.78
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.78
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.78
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.71
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	98.71
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	98.67
PRK11200	85	grxA glutaredoxin 1; Provisional	98.66
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.66
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.65
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.65
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.64
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.64
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	98.62
PRK15000	200	peroxidase; Provisional	98.62
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.56
KOG3171	273	consensus Conserved phosducin-like protein [Signal	98.55
PRK13190	202	putative peroxiredoxin; Provisional	98.55
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.51
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.51
PRK13599	215	putative peroxiredoxin; Provisional	98.5
PTZ00062	204	glutaredoxin; Provisional	98.48
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	98.48
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.45
PRK13189	222	peroxiredoxin; Provisional	98.43
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.41
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	98.41
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	98.39
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.36
PRK13191	215	putative peroxiredoxin; Provisional	98.34
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	98.34
PTZ00137	261	2-Cys peroxiredoxin; Provisional	98.33
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	98.29
PTZ00253	199	tryparedoxin peroxidase; Provisional	98.28
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	98.28
KOG4277	468	consensus Uncharacterized conserved protein, conta	98.27
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	98.25
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	98.25
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.22
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	98.17
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.13
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	98.12
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.12
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.12
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	98.07
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	98.06
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	98.04
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	98.01
PHA03050	108	glutaredoxin; Provisional	97.95
PRK10329	81	glutaredoxin-like protein; Provisional	97.9
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	97.87
KOG3170	240	consensus Conserved phosducin-like protein [Signal	97.85
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.83
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.82
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	97.81
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.81
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	97.78
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.78
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.78
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.74
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.74
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	97.73
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	97.63
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.61
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	97.54
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.54
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	97.5
PRK10638	83	glutaredoxin 3; Provisional	97.46
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	97.37
PRK10824	115	glutaredoxin-4; Provisional	97.34
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	97.29
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.16
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	97.1
cd02990	136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	97.09
COG1331	667	Highly conserved protein containing a thioredoxin	97.03
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	96.93
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	96.89
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	96.79
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	96.77
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	96.75
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	96.61
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	96.38
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	96.37
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	96.33
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	96.07
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	96.05
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	95.54
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	95.4
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	95.05
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	94.84
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	94.67
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	94.65
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	94.58
KOG2640	319	consensus Thioredoxin [Function unknown]	94.2
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	94.13
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	94.12
cd02978	72	KaiB_like KaiB-like family; composed of the circad	94.0
PF06491	136	Disulph_isomer: Disulphide isomerase; InterPro: IP	93.92
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	93.6
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	93.4
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	93.17
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	93.06
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	93.0
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	92.93
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	92.84
COG3019	149	Predicted metal-binding protein [General function	92.55
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	92.49
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	92.27
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	92.23
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	92.06
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	92.0
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	91.98
PRK09301	103	circadian clock protein KaiB; Provisional	91.63
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	91.47
PF06053	249	DUF929: Domain of unknown function (DUF929); Inter	91.23
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	91.2
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	91.15
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	90.89
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	90.88
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	90.83
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	90.81
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	90.76
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	90.61
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	90.59
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	90.52
PHA03075	123	glutaredoxin-like protein; Provisional	90.27
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	90.04
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	89.88
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	89.81
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	89.71
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	89.63
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	89.41
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	89.4
PRK12559	131	transcriptional regulator Spx; Provisional	89.29
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	89.08
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	88.97
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	88.78
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	88.62
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	88.34
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	88.26
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	87.71
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	87.7
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	87.45
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	87.29
COG3531	212	Predicted protein-disulfide isomerase [Posttransla	87.22
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	87.19
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	86.76
PTZ00051	98	thioredoxin; Provisional	86.44
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	86.26
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	86.01
PRK10996	139	thioredoxin 2; Provisional	85.92
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	85.86
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	85.19
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	85.07
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	84.98
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	84.9
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	84.29
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	84.28
PHA02278	103	thioredoxin-like protein	84.26
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	84.26
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	84.05
cd02947	93	TRX_family TRX family; composed of two groups: Gro	83.83
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	83.74
PF07689	82	KaiB: KaiB domain; InterPro: IPR011649 The cyanoba	83.45
PRK09381	109	trxA thioredoxin; Provisional	81.99
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	81.82
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	81.57

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.9e-27  Score=167.74  Aligned_cols=105  Identities=33%  Similarity=0.675  Sum_probs=96.6

Q ss_pred             eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      ...+.+.++|++.+.   +++.||+|+|||+||+||+.+.|.+++++.++.+++.++++|.|++.+ ++.+|+|.++||+
T Consensus        44 ~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-la~~Y~I~avPtv  119 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-LAEDYEISAVPTV  119 (150)
T ss_pred             cccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-hHhhcceeeeeEE
Confidence            344567889988876   679999999999999999999999999999999999999999999996 9999999999999


Q ss_pred             EEEeCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703          157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       157 ~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      ++|+||+.+.++.|..+.    +.|+++|+++|
T Consensus       120 lvfknGe~~d~~vG~~~~----~~l~~~i~k~l  148 (150)
T KOG0910|consen  120 LVFKNGEKVDRFVGAVPK----EQLRSLIKKFL  148 (150)
T ss_pred             EEEECCEEeeeecccCCH----HHHHHHHHHHh
Confidence            999999999999999999    88888888764

>PHA02278 thioredoxin-like protein

Probab=99.92  E-value=1.6e-24  Score=146.97  Aligned_cols=96  Identities=18%  Similarity=0.269  Sum_probs=84.4

Q ss_pred             CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCCCCCCCeEE
Q 029703           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISKMPTIQ  157 (189)
Q Consensus        81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~  157 (189)
                      ++.++|++.+    .++++++|+|||+||+||+.+.|.++++++++..++.|+++|++.++   .+++++|+|.++||++
T Consensus         2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i   77 (103)
T PHA02278          2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI   77 (103)
T ss_pred             CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence            3567899998    68999999999999999999999999999886566789999999862   3599999999999999


Q ss_pred             EEeCCeEEEEEeCCCcchhhHHHHHHH
Q 029703          158 IWKDGEMKSEVIGGHKAWLVIEEVREM  184 (189)
Q Consensus       158 ~~~~G~~~~~~~g~~~~~~~~~~l~~~  184 (189)
                      +|++|+.+.++.|..+.    +.|.++
T Consensus        78 ~fk~G~~v~~~~G~~~~----~~l~~~  100 (103)
T PHA02278         78 GYKDGQLVKKYEDQVTP----MQLQEL  100 (103)
T ss_pred             EEECCEEEEEEeCCCCH----HHHHhh
Confidence            99999999999998877    666554

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.92  E-value=7.6e-25  Score=150.04  Aligned_cols=89  Identities=20%  Similarity=0.336  Sum_probs=80.6

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG  162 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G  162 (189)
                      .++|+..+..  ..++++||+|||+||+||+.|.|.++++++++.+.+.|++||++.+++ ++.+|+|.++||+++|++|
T Consensus         2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~-la~~~~V~~iPTf~~fk~G   78 (114)
T cd02954           2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD-FNKMYELYDPPTVMFFFRN   78 (114)
T ss_pred             HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH-HHHHcCCCCCCEEEEEECC
Confidence            5678888842  368899999999999999999999999999997778999999999995 9999999999999999999


Q ss_pred             eEEEEEeCCCcc
Q 029703          163 EMKSEVIGGHKA  174 (189)
Q Consensus       163 ~~~~~~~g~~~~  174 (189)
                      +.+.+..|..+.
T Consensus        79 ~~v~~~~G~~~~   90 (114)
T cd02954          79 KHMKIDLGTGNN   90 (114)
T ss_pred             EEEEEEcCCCCC
Confidence            999999997654

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.91  E-value=2e-23  Score=141.23  Aligned_cols=100  Identities=31%  Similarity=0.593  Sum_probs=92.2

Q ss_pred             CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~  160 (189)
                      .+.++|++.+.   .++++++|+||++||++|+.+.|.|+++++.+.+++.|+.+|++.++. ++++|+|.++||+++|+
T Consensus         4 lt~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~   79 (103)
T PF00085_consen    4 LTDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE-LCKKYGVKSVPTIIFFK   79 (103)
T ss_dssp             ESTTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH-HHHHTTCSSSSEEEEEE
T ss_pred             CCHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch-hhhccCCCCCCEEEEEE
Confidence            34779999993   238999999999999999999999999999997699999999999885 99999999999999999


Q ss_pred             CCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          161 DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       161 ~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +|+...++.|..+.    +.|.+||+++
T Consensus        80 ~g~~~~~~~g~~~~----~~l~~~i~~~  103 (103)
T PF00085_consen   80 NGKEVKRYNGPRNA----ESLIEFIEKH  103 (103)
T ss_dssp             TTEEEEEEESSSSH----HHHHHHHHHH
T ss_pred             CCcEEEEEECCCCH----HHHHHHHHcC
Confidence            99999999999888    9999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.91  E-value=7.6e-24  Score=145.97  Aligned_cols=96  Identities=15%  Similarity=0.190  Sum_probs=84.7

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHH-HhCCCCCCCeEEEEeC
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV-KRGNISKMPTIQIWKD  161 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~-~~~~i~~~Pt~~~~~~  161 (189)
                      .++|++++.-. .+++++||+|||+||++|+.+.|.++++++++++.+.|++||++.+.+ ++ ++|+|.++||+++|++
T Consensus        16 ~~~f~~~~~v~-~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~-l~~~~~~I~~~PTl~lf~~   93 (113)
T cd03006          16 KGQLDYAEELR-TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG-KCRKQKHFFYFPVIHLYYR   93 (113)
T ss_pred             hhhhHHHHhcc-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH-HHHHhcCCcccCEEEEEEC
Confidence            66888863111 689999999999999999999999999999998789999999999885 88 5899999999999999


Q ss_pred             CeEEEEEeCCCcchhhHHHHHHH
Q 029703          162 GEMKSEVIGGHKAWLVIEEVREM  184 (189)
Q Consensus       162 G~~~~~~~g~~~~~~~~~~l~~~  184 (189)
                      |+...++.|..+.    +.|..|
T Consensus        94 g~~~~~y~G~~~~----~~i~~~  112 (113)
T cd03006          94 SRGPIEYKGPMRA----PYMEKF  112 (113)
T ss_pred             CccceEEeCCCCH----HHHHhh
Confidence            9988999999988    777665

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.5e-23  Score=142.52  Aligned_cols=99  Identities=34%  Similarity=0.643  Sum_probs=85.1

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG  162 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G  162 (189)
                      .++++.....+...+++++|+|||+|||||+.+.|.+.+++.+|.+ +.|+++|+|+.. ++++.++|..+||+++|++|
T Consensus         7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~-~~~~~~~V~~~PTf~f~k~g   84 (106)
T KOG0907|consen    7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELE-EVAKEFNVKAMPTFVFYKGG   84 (106)
T ss_pred             hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCH-hHHHhcCceEeeEEEEEECC
Confidence            3455555544445679999999999999999999999999999955 999999999955 59999999999999999999


Q ss_pred             eEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          163 EMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       163 ~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +.+.++.|...     ++|++.|.++
T Consensus        85 ~~~~~~vGa~~-----~~l~~~i~~~  105 (106)
T KOG0907|consen   85 EEVDEVVGANK-----AELEKKIAKH  105 (106)
T ss_pred             EEEEEEecCCH-----HHHHHHHHhc
Confidence            99999999877     4777777654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=6.8e-24  Score=164.51  Aligned_cols=106  Identities=26%  Similarity=0.575  Sum_probs=96.6

Q ss_pred             eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      +..++ ..+|++.+..+ +..+||+|+||+|||+||+.+.|.+++++.++++++.+++||||.++. ++.+|||+++||+
T Consensus        25 I~dvT-~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-vAaqfgiqsIPtV  101 (304)
T COG3118          25 IKDVT-EANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-VAAQFGVQSIPTV  101 (304)
T ss_pred             ceech-HhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-HHHHhCcCcCCeE
Confidence            34344 67998888665 567799999999999999999999999999999999999999999996 9999999999999


Q ss_pred             EEEeCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703          157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       157 ~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      +.|++|+.+..+.|....    ++|++||++++
T Consensus       102 ~af~dGqpVdgF~G~qPe----sqlr~~ld~~~  130 (304)
T COG3118         102 YAFKDGQPVDGFQGAQPE----SQLRQFLDKVL  130 (304)
T ss_pred             EEeeCCcCccccCCCCcH----HHHHHHHHHhc
Confidence            999999999999999998    89999998864

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.91  E-value=1.3e-23  Score=142.43  Aligned_cols=97  Identities=15%  Similarity=0.366  Sum_probs=87.4

Q ss_pred             eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      ..+ +.++|++.+    .++++++|+||++||++|+.+.|.++++++.+++.+.|+++|++.++. ++++|+|+++||++
T Consensus         4 ~~l-~~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~   77 (101)
T cd03003           4 VTL-DRGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCRSQGVNSYPSLY   77 (101)
T ss_pred             EEc-CHhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHHHcCCCccCEEE
Confidence            334 477999998    577999999999999999999999999999998889999999999885 99999999999999


Q ss_pred             EEeCCeEEEEEeCCCcchhhHHHHHHH
Q 029703          158 IWKDGEMKSEVIGGHKAWLVIEEVREM  184 (189)
Q Consensus       158 ~~~~G~~~~~~~g~~~~~~~~~~l~~~  184 (189)
                      +|++|+.+.++.|..+.    +.|..|
T Consensus        78 ~~~~g~~~~~~~G~~~~----~~l~~f  100 (101)
T cd03003          78 VFPSGMNPEKYYGDRSK----ESLVKF  100 (101)
T ss_pred             EEcCCCCcccCCCCCCH----HHHHhh
Confidence            99999999999999887    666655

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.91  E-value=4.4e-23  Score=140.41  Aligned_cols=98  Identities=19%  Similarity=0.332  Sum_probs=85.2

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh--HHHHHhCCCCCCCeEEEE
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--KDLVKRGNISKMPTIQIW  159 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~--~~l~~~~~i~~~Pt~~~~  159 (189)
                      +.++|++.+..  ..++++||+|||+||++|+.+.|.++++++++ +++.|+.||+++..  .+++++|+|.++||+++|
T Consensus         2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~   78 (103)
T cd02985           2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY   78 (103)
T ss_pred             CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence            46789999854  35899999999999999999999999999999 78999999999874  259999999999999999


Q ss_pred             eCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          160 KDGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       160 ~~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      ++|+.+.++.|...     ++|.+.+..
T Consensus        79 ~~G~~v~~~~G~~~-----~~l~~~~~~  101 (103)
T cd02985          79 KDGEKIHEEEGIGP-----DELIGDVLY  101 (103)
T ss_pred             eCCeEEEEEeCCCH-----HHHHHHHHh
Confidence            99999999999776     566665543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.91  E-value=4.6e-23  Score=140.07  Aligned_cols=98  Identities=22%  Similarity=0.418  Sum_probs=87.2

Q ss_pred             ecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703           79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus        79 ~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      .+.+.++|++++    .++++++|+|||+||++|+.+.|.++++++++++ .+.|+.+|++ .+ +++++|+|+++||++
T Consensus         3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~-~~~~~~~v~~~Pt~~   76 (102)
T cd02948           3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI-DTLKRYRGKCEPTFL   76 (102)
T ss_pred             EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH-HHHHHcCCCcCcEEE
Confidence            367789999998    6799999999999999999999999999999864 4789999999 55 489999999999999


Q ss_pred             EEeCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          158 IWKDGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       158 ~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      +|++|+.+.+..|. +.    +.|.++|++
T Consensus        77 ~~~~g~~~~~~~G~-~~----~~~~~~i~~  101 (102)
T cd02948          77 FYKNGELVAVIRGA-NA----PLLNKTITE  101 (102)
T ss_pred             EEECCEEEEEEecC-Ch----HHHHHHHhh
Confidence            99999999999997 44    778888875

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.91  E-value=2.2e-23  Score=144.75  Aligned_cols=99  Identities=21%  Similarity=0.269  Sum_probs=88.9

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChh--hh--hhhHHHHHHHHHh--CCCeEEEEEEccCChHHHHHhCCCCCCCe
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRK--CI--YLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~--C~--~~~~~l~~~~~~~--~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      +.++|++.+.   +++.++|++||++||+|  |+  ++.|.+.+++.++  .+++.|++||++.+++ ++++|+|.++||
T Consensus        15 t~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~-La~~~~I~~iPT   90 (120)
T cd03065          15 NEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK-VAKKLGLDEEDS   90 (120)
T ss_pred             ChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH-HHHHcCCccccE
Confidence            4689999986   56789999999999987  99  8899999999998  7889999999999985 999999999999


Q ss_pred             EEEEeCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703          156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      +++|++|+.+. +.|.++.    +.|.+||++++
T Consensus        91 l~lfk~G~~v~-~~G~~~~----~~l~~~l~~~~  119 (120)
T cd03065          91 IYVFKDDEVIE-YDGEFAA----DTLVEFLLDLI  119 (120)
T ss_pred             EEEEECCEEEE-eeCCCCH----HHHHHHHHHHh
Confidence            99999999887 9999998    88888887653

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.90  E-value=5.8e-23  Score=137.83  Aligned_cols=95  Identities=21%  Similarity=0.433  Sum_probs=85.3

Q ss_pred             HHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM  164 (189)
Q Consensus        85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~  164 (189)
                      +|++.+..  ..+++++|+||++||++|+.+.|.++++++.+.+.+.++++|++.... ++++|+|.++||+++|++|+.
T Consensus         2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~i~~~Pt~~~~~~g~~   78 (96)
T cd02956           2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ-IAQQFGVQALPTVYLFAAGQP   78 (96)
T ss_pred             ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH-HHHHcCCCCCCEEEEEeCCEE
Confidence            56777753  347899999999999999999999999999997789999999999985 999999999999999999999


Q ss_pred             EEEEeCCCcchhhHHHHHHHHH
Q 029703          165 KSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       165 ~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      +.++.|..+.    +.|.+||+
T Consensus        79 ~~~~~g~~~~----~~l~~~l~   96 (96)
T cd02956          79 VDGFQGAQPE----EQLRQMLD   96 (96)
T ss_pred             eeeecCCCCH----HHHHHHhC
Confidence            9999999888    78888764

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.90  E-value=4.2e-23  Score=140.53  Aligned_cols=96  Identities=30%  Similarity=0.560  Sum_probs=86.1

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeC
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKD  161 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~  161 (189)
                      +.++|++.+.   ..+++++|+|||+||++|+.+.|.++++++++.+.+.|+++|++.+++ ++++|+|.++||+++|++
T Consensus         7 ~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~i~~~Pt~~~~~~   82 (104)
T cd03004           7 TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES-LCQQANIRAYPTIRLYPG   82 (104)
T ss_pred             CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH-HHHHcCCCcccEEEEEcC
Confidence            4779999875   457799999999999999999999999999997789999999999885 999999999999999997


Q ss_pred             C-eEEEEEeCCCc-chhhHHHHHHHH
Q 029703          162 G-EMKSEVIGGHK-AWLVIEEVREMI  185 (189)
Q Consensus       162 G-~~~~~~~g~~~-~~~~~~~l~~~i  185 (189)
                      | +.+.++.|..+ .    +.|.+||
T Consensus        83 g~~~~~~~~G~~~~~----~~l~~~i  104 (104)
T cd03004          83 NASKYHSYNGWHRDA----DSILEFI  104 (104)
T ss_pred             CCCCceEccCCCCCH----HHHHhhC
Confidence            7 88999999876 7    7777764

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.90  E-value=8e-23  Score=140.92  Aligned_cols=101  Identities=16%  Similarity=0.366  Sum_probs=88.1

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~  160 (189)
                      +.++|++.+... ..+++++|+||++||++|+.+.|.++++++++.+ ++.++++|++..+. ++++++|.++||+++|+
T Consensus        10 ~~~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~-l~~~~~V~~~Pt~~i~~   87 (111)
T cd02963          10 TFSQYENEIVPK-SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR-LARKLGAHSVPAIVGII   87 (111)
T ss_pred             eHHHHHHhhccc-cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH-HHHHcCCccCCEEEEEE
Confidence            466787654321 3689999999999999999999999999999954 59999999999885 99999999999999999


Q ss_pred             CCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          161 DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       161 ~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +|+.+.++.|..+.    +.|.+||+++
T Consensus        88 ~g~~~~~~~G~~~~----~~l~~~i~~~  111 (111)
T cd02963          88 NGQVTFYHDSSFTK----QHVVDFVRKL  111 (111)
T ss_pred             CCEEEEEecCCCCH----HHHHHHHhcC
Confidence            99999999998888    8899998763

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.89  E-value=1.3e-22  Score=144.00  Aligned_cols=91  Identities=19%  Similarity=0.318  Sum_probs=81.7

Q ss_pred             eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      +.++.+.++|++.+..  .+++++||+|||+||+||+.+.|.|+++++++++.+.|++||+|++++ ++++|+|++.|++
T Consensus         5 l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-la~~y~I~~~~t~   81 (142)
T PLN00410          5 LPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-FNTMYELYDPCTV   81 (142)
T ss_pred             HhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-HHHHcCccCCCcE
Confidence            4557889999999964  368899999999999999999999999999997779999999999995 9999999988777


Q ss_pred             E-EEeCCe-EEEEEeC
Q 029703          157 Q-IWKDGE-MKSEVIG  170 (189)
Q Consensus       157 ~-~~~~G~-~~~~~~g  170 (189)
                      + +|++|+ .+.+..|
T Consensus        82 ~~ffk~g~~~vd~~tG   97 (142)
T PLN00410         82 MFFFRNKHIMIDLGTG   97 (142)
T ss_pred             EEEEECCeEEEEEecc
Confidence            7 889999 8899999

>PRK10996 thioredoxin 2; Provisional

Probab=99.89  E-value=4.5e-22  Score=142.44  Aligned_cols=99  Identities=28%  Similarity=0.535  Sum_probs=91.9

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeC
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKD  161 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~  161 (189)
                      +.++|++.+    .++++++|+||++||++|+.+.|.+.++++++.+++.++++|++..++ ++++|+|.++||+++|++
T Consensus        41 ~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~V~~~Ptlii~~~  115 (139)
T PRK10996         41 TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE-LSARFRIRSIPTIMIFKN  115 (139)
T ss_pred             CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH-HHHhcCCCccCEEEEEEC
Confidence            578999988    679999999999999999999999999999987889999999999885 999999999999999999


Q ss_pred             CeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703          162 GEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       162 G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      |+.+.++.|..+.    +.|.+||++.+
T Consensus       116 G~~v~~~~G~~~~----e~l~~~l~~~~  139 (139)
T PRK10996        116 GQVVDMLNGAVPK----APFDSWLNEAL  139 (139)
T ss_pred             CEEEEEEcCCCCH----HHHHHHHHHhC
Confidence            9999999999888    88999998764

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.89  E-value=5.3e-22  Score=137.16  Aligned_cols=104  Identities=21%  Similarity=0.366  Sum_probs=90.3

Q ss_pred             ceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCe
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      .+..+++.++|.+.+    .++++++|+||++||++|+.+.|.++++++++ +++.|++||++..++ ++++|+|.++||
T Consensus         5 ~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~~~~~-l~~~~~v~~vPt   78 (113)
T cd02989           5 KYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAEKAPF-LVEKLNIKVLPT   78 (113)
T ss_pred             CeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcccCHH-HHHHCCCccCCE
Confidence            356778889999999    67899999999999999999999999999998 579999999999985 999999999999


Q ss_pred             EEEEeCCeEEEEEeCCCcc----hhhHHHHHHHH
Q 029703          156 IQIWKDGEMKSEVIGGHKA----WLVIEEVREMI  185 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~----~~~~~~l~~~i  185 (189)
                      +++|++|+.+.++.|....    +...+.|+.||
T Consensus        79 ~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          79 VILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            9999999999999887542    33445566554

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.89  E-value=2.3e-22  Score=136.09  Aligned_cols=92  Identities=14%  Similarity=0.304  Sum_probs=79.9

Q ss_pred             HHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEcc-CChHHHHHhCCCCCCCeEEEEeCCe
Q 029703           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGNISKMPTIQIWKDGE  163 (189)
Q Consensus        85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~-~~~~~l~~~~~i~~~Pt~~~~~~G~  163 (189)
                      .+.+++..  ..+++++|+|||+||++|+.+.|.|+++++++ +++.++.+|.+ ..+ .++++|+|.++||+++|++| 
T Consensus         8 ~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~-~~~~~~~vd~~~~~~-~l~~~~~V~~~PT~~lf~~g-   82 (100)
T cd02999           8 IALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMF-PQIRHLAIEESSIKP-SLLSRYGVVGFPTILLFNST-   82 (100)
T ss_pred             HHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHh-ccCceEEEECCCCCH-HHHHhcCCeecCEEEEEcCC-
Confidence            44455433  57999999999999999999999999999999 46889999998 666 49999999999999999999 


Q ss_pred             EEEEEeCCCcchhhHHHHHHHH
Q 029703          164 MKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       164 ~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      .+.++.|..+.    +.|.+||
T Consensus        83 ~~~~~~G~~~~----~~l~~f~  100 (100)
T cd02999          83 PRVRYNGTRTL----DSLAAFY  100 (100)
T ss_pred             ceeEecCCCCH----HHHHhhC
Confidence            78899999888    7787764

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.88  E-value=1e-21  Score=134.78  Aligned_cols=104  Identities=23%  Similarity=0.535  Sum_probs=92.0

Q ss_pred             eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      +..++ .++|++.+.   ..+++++|+||++||++|+.+.|.++++++.+.+++.++.+|++..+. ++++|+|.++||+
T Consensus         5 v~~~~-~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~   79 (109)
T PRK09381          5 IIHLT-DDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTL   79 (109)
T ss_pred             ceeeC-hhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh-HHHhCCCCcCCEE
Confidence            44454 468887653   568899999999999999999999999999998889999999999885 8999999999999


Q ss_pred             EEEeCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703          157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       157 ~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      ++|++|+.+.++.|..+.    +.|.++|++.|
T Consensus        80 ~~~~~G~~~~~~~G~~~~----~~l~~~i~~~~  108 (109)
T PRK09381         80 LLFKNGEVAATKVGALSK----GQLKEFLDANL  108 (109)
T ss_pred             EEEeCCeEEEEecCCCCH----HHHHHHHHHhc
Confidence            999999999999999887    88888888764

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.88  E-value=4.4e-22  Score=136.49  Aligned_cols=99  Identities=31%  Similarity=0.588  Sum_probs=85.3

Q ss_pred             eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC------CCeEEEEEEccCChHHHHHhCCC
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD------TKLKFYYVDVNKVSKDLVKRGNI  150 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~------~~v~~~~vd~~~~~~~l~~~~~i  150 (189)
                      +..+ +.++|++.+    ..+++++|.|||+||++|+.+.|.|+++++.++      +.+.++.+|++.+++ ++++|+|
T Consensus         3 v~~l-~~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~v   76 (108)
T cd02996           3 IVSL-TSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD-IADRYRI   76 (108)
T ss_pred             eEEc-CHhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH-HHHhCCC
Confidence            3444 477999988    678999999999999999999999999998762      258999999999985 9999999


Q ss_pred             CCCCeEEEEeCCe-EEEEEeCCCcchhhHHHHHHHH
Q 029703          151 SKMPTIQIWKDGE-MKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       151 ~~~Pt~~~~~~G~-~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      +++||+++|++|+ ...++.|.++.    +.|.+||
T Consensus        77 ~~~Ptl~~~~~g~~~~~~~~g~~~~----~~l~~fi  108 (108)
T cd02996          77 NKYPTLKLFRNGMMMKREYRGQRSV----EALAEFV  108 (108)
T ss_pred             CcCCEEEEEeCCcCcceecCCCCCH----HHHHhhC
Confidence            9999999999998 45788898887    7777764

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.87  E-value=1.5e-21  Score=132.93  Aligned_cols=88  Identities=16%  Similarity=0.214  Sum_probs=82.7

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCC--ChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEE
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW  159 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~w--C~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~  159 (189)
                      +..+|++.+    ..+.+++|+||++|  |++|+.+.|.|+++++++.+.+.|+++|++++++ ++.+|+|.++||+++|
T Consensus        16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~-la~~f~V~sIPTli~f   90 (111)
T cd02965          16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA-LAARFGVLRTPALLFF   90 (111)
T ss_pred             ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH-HHHHcCCCcCCEEEEE
Confidence            467999888    67899999999997  9999999999999999998889999999999995 9999999999999999


Q ss_pred             eCCeEEEEEeCCCcc
Q 029703          160 KDGEMKSEVIGGHKA  174 (189)
Q Consensus       160 ~~G~~~~~~~g~~~~  174 (189)
                      ++|+.+.++.|..+.
T Consensus        91 kdGk~v~~~~G~~~~  105 (111)
T cd02965          91 RDGRYVGVLAGIRDW  105 (111)
T ss_pred             ECCEEEEEEeCccCH
Confidence            999999999998887

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.87  E-value=2.5e-21  Score=131.11  Aligned_cols=98  Identities=27%  Similarity=0.456  Sum_probs=84.2

Q ss_pred             eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHhCCCCCCCe
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      +..++ .++|++.+    . ++ ++|+|||+||++|+.+.|.|+++++.++. ++.++.+|++.++. ++++|+|.++||
T Consensus         3 v~~l~-~~~f~~~~----~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~-~~~~~~i~~~Pt   74 (101)
T cd02994           3 VVELT-DSNWTLVL----E-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG-LSGRFFVTALPT   74 (101)
T ss_pred             eEEcC-hhhHHHHh----C-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh-HHHHcCCcccCE
Confidence            34444 77999877    3 33 89999999999999999999999998753 69999999999885 999999999999


Q ss_pred             EEEEeCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      ++++++|+. .++.|..+.    +.|.+||++
T Consensus        75 ~~~~~~g~~-~~~~G~~~~----~~l~~~i~~  101 (101)
T cd02994          75 IYHAKDGVF-RRYQGPRDK----EDLISFIEE  101 (101)
T ss_pred             EEEeCCCCE-EEecCCCCH----HHHHHHHhC
Confidence            999999984 789999888    888888864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.87  E-value=2.2e-21  Score=131.27  Aligned_cols=94  Identities=26%  Similarity=0.543  Sum_probs=83.7

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC---CeEEEEEEccCChHHHHHhCCCCCCCeEEE
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISKMPTIQI  158 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~  158 (189)
                      +.++|++.+    .++ +++|+||++||++|+.+.|.++++++++++   ++.++.+|++.+.. ++++|+|.++||+++
T Consensus         6 ~~~~f~~~~----~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~   79 (102)
T cd03005           6 TEDNFDHHI----AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE-LCSEFQVRGYPTLLL   79 (102)
T ss_pred             CHHHHHHHh----hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh-hHhhcCCCcCCEEEE
Confidence            367899998    344 599999999999999999999999999865   79999999999885 999999999999999


Q ss_pred             EeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703          159 WKDGEMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       159 ~~~G~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      |++|+.+.++.|..+.    +.|.+||
T Consensus        80 ~~~g~~~~~~~G~~~~----~~l~~~i  102 (102)
T cd03005          80 FKDGEKVDKYKGTRDL----DSLKEFV  102 (102)
T ss_pred             EeCCCeeeEeeCCCCH----HHHHhhC
Confidence            9999998999999987    7777664

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.86  E-value=1.6e-21  Score=134.79  Aligned_cols=104  Identities=21%  Similarity=0.425  Sum_probs=85.3

Q ss_pred             eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      +.++++ ++|.+.+..+ ..+++++|+||++||++|+.+.|.++++++++ +++.|++||++..  .++++|+|.++||+
T Consensus         6 v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-~~v~f~~vd~~~~--~l~~~~~i~~~Pt~   80 (113)
T cd02957           6 VREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-PETKFVKINAEKA--FLVNYLDIKVLPTL   80 (113)
T ss_pred             EEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEEchhh--HHHHhcCCCcCCEE
Confidence            455665 7999888431 12489999999999999999999999999999 5799999999988  49999999999999


Q ss_pred             EEEeCCeEEEEEeCCCc---chhhHHHHHHHH
Q 029703          157 QIWKDGEMKSEVIGGHK---AWLVIEEVREMI  185 (189)
Q Consensus       157 ~~~~~G~~~~~~~g~~~---~~~~~~~l~~~i  185 (189)
                      ++|++|+.+.++.|..+   .+...+.|+.++
T Consensus        81 ~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l  112 (113)
T cd02957          81 LVYKNGELIDNIVGFEELGGDDFTTEDLEKFL  112 (113)
T ss_pred             EEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence            99999999999998643   333445555544

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>TIGR01068 thioredoxin thioredoxin

Probab=99.86  E-value=1.1e-20  Score=127.17  Aligned_cols=99  Identities=26%  Similarity=0.622  Sum_probs=89.3

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG  162 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G  162 (189)
                      .++|.+.+.   ..+++++|+||++||++|+.+.|.++++++++.+++.|+.+|++.... ++++|+|.++|++++|++|
T Consensus         3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~P~~~~~~~g   78 (101)
T TIGR01068         3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD-IAAKYGIRSIPTLLLFKNG   78 (101)
T ss_pred             HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHcCCCcCCEEEEEeCC
Confidence            568888874   346799999999999999999999999999997789999999999885 9999999999999999999


Q ss_pred             eEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703          163 EMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       163 ~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      +.+.++.|..+.    +.|.++|++.+
T Consensus        79 ~~~~~~~g~~~~----~~l~~~l~~~~  101 (101)
T TIGR01068        79 KEVDRSVGALPK----AALKQLINKNL  101 (101)
T ss_pred             cEeeeecCCCCH----HHHHHHHHhhC
Confidence            999999999887    88999988764

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.86  E-value=7.6e-21  Score=127.61  Aligned_cols=96  Identities=18%  Similarity=0.454  Sum_probs=84.3

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeC
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKD  161 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~  161 (189)
                      +.++|++.+..+  .+++++|+||++||++|+.+.|.|+++++++.+++.++++|++..++ ++++|+|.++||+++|++
T Consensus         1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~-~~~~~~i~~~Pt~~~~~~   77 (97)
T cd02984           1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE-ISEKFEITAVPTFVFFRN   77 (97)
T ss_pred             CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH-HHHhcCCccccEEEEEEC
Confidence            357899988542  26999999999999999999999999999976789999999999885 999999999999999999


Q ss_pred             CeEEEEEeCCCcchhhHHHHHHHH
Q 029703          162 GEMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       162 G~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      |+.+.++.|...     ++|.++|
T Consensus        78 g~~~~~~~g~~~-----~~l~~~~   96 (97)
T cd02984          78 GTIVDRVSGADP-----KELAKKV   96 (97)
T ss_pred             CEEEEEEeCCCH-----HHHHHhh
Confidence            999999999765     5666655

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.86  E-value=4.9e-21  Score=131.22  Aligned_cols=96  Identities=21%  Similarity=0.485  Sum_probs=84.4

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC--ChHHHHHhCCCCCCCeEEEE
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNISKMPTIQIW  159 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~--~~~~l~~~~~i~~~Pt~~~~  159 (189)
                      +.++|++.+.   ..+++++|+||++||++|+.+.|.++++++.+.+.+.++.+|++.  +. +++++|+|.++||+++|
T Consensus         6 ~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~-~~~~~~~i~~~Pt~~~~   81 (109)
T cd03002           6 TPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNK-PLCGKYGVQGFPTLKVF   81 (109)
T ss_pred             chhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccH-HHHHHcCCCcCCEEEEE
Confidence            3678998885   467889999999999999999999999999997789999999998  66 49999999999999999


Q ss_pred             eCCe-----EEEEEeCCCcchhhHHHHHHHH
Q 029703          160 KDGE-----MKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       160 ~~G~-----~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      ++|+     ....+.|..+.    +.|.+||
T Consensus        82 ~~~~~~~~~~~~~~~G~~~~----~~l~~fi  108 (109)
T cd03002          82 RPPKKASKHAVEDYNGERSA----KAIVDFV  108 (109)
T ss_pred             eCCCcccccccccccCccCH----HHHHHHh
Confidence            8775     45688898888    8888887

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.86  E-value=8.2e-21  Score=136.31  Aligned_cols=98  Identities=18%  Similarity=0.456  Sum_probs=83.6

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh-HHHHHhCCCCCCCeEEEEe-
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPTIQIWK-  160 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~~~~-  160 (189)
                      ..+|++.+    ..++++||+||++||++|+.+.|.+.++++++.+++.|+.||++... ..++++|+|.++||+++|+ 
T Consensus        10 ~~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~   85 (142)
T cd02950          10 STPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR   85 (142)
T ss_pred             cCCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC
Confidence            45677777    68999999999999999999999999999999777889999988653 2489999999999999995 


Q ss_pred             CCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          161 DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       161 ~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +|+++.++.|....    +.|.++|+++
T Consensus        86 ~G~~v~~~~G~~~~----~~l~~~l~~l  109 (142)
T cd02950          86 EGNEEGQSIGLQPK----QVLAQNLDAL  109 (142)
T ss_pred             CCCEEEEEeCCCCH----HHHHHHHHHH
Confidence            89999999999888    5555555543

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PTZ00051 thioredoxin; Provisional

Probab=99.86  E-value=1.3e-20  Score=126.81  Aligned_cols=91  Identities=26%  Similarity=0.647  Sum_probs=83.2

Q ss_pred             eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      +..+++.+++++++    ..+++++|+||++||++|+.+.|.++++++++ +++.|+.+|++.... ++++|+|.++||+
T Consensus         2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~   75 (98)
T PTZ00051          2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY-TKMVFVKVDVDELSE-VAEKENITSMPTF   75 (98)
T ss_pred             eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc-CCcEEEEEECcchHH-HHHHCCCceeeEE
Confidence            45677889999998    67899999999999999999999999999988 579999999998875 9999999999999


Q ss_pred             EEEeCCeEEEEEeCCCc
Q 029703          157 QIWKDGEMKSEVIGGHK  173 (189)
Q Consensus       157 ~~~~~G~~~~~~~g~~~  173 (189)
                      ++|++|+.+.++.|...
T Consensus        76 ~~~~~g~~~~~~~G~~~   92 (98)
T PTZ00051         76 KVFKNGSVVDTLLGAND   92 (98)
T ss_pred             EEEeCCeEEEEEeCCCH
Confidence            99999999999999754

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=3.1e-21  Score=145.62  Aligned_cols=104  Identities=21%  Similarity=0.467  Sum_probs=93.3

Q ss_pred             ceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCe
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      .+..+.+..+|+..+..  ...|.++|+|+|+||+||+++.|.+..++.+| ++..|++||+++... ++..+||.+.||
T Consensus         2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p~aVFlkVdVd~c~~-taa~~gV~amPT   77 (288)
T KOG0908|consen    2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-PGAVFLKVDVDECRG-TAATNGVNAMPT   77 (288)
T ss_pred             CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhC-cccEEEEEeHHHhhc-hhhhcCcccCce
Confidence            36678889999999965  47789999999999999999999999999999 788999999999986 899999999999


Q ss_pred             EEEEeCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +++|+||..+.+++|+..     ..|++.+.++
T Consensus        78 Fiff~ng~kid~~qGAd~-----~gLe~kv~~~  105 (288)
T KOG0908|consen   78 FIFFRNGVKIDQIQGADA-----SGLEEKVAKY  105 (288)
T ss_pred             EEEEecCeEeeeecCCCH-----HHHHHHHHHH
Confidence            999999999999999876     4666666654

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.86  E-value=1.1e-20  Score=127.59  Aligned_cols=99  Identities=27%  Similarity=0.537  Sum_probs=88.8

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC--CeEEEEEEccCChHHHHHhCCCCCCCeEEEE
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISKMPTIQIW  159 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~  159 (189)
                      +.++|++.+    .++++++|+||++||++|+.+.+.++++++.+++  ++.++.+|++.+.. ++++|+|.++|++++|
T Consensus         2 ~~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~P~~~~~   76 (102)
T TIGR01126         2 TASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD-LASRFGVSGFPTIKFF   76 (102)
T ss_pred             chhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH-HHHhCCCCcCCEEEEe
Confidence            367899888    6799999999999999999999999999999865  69999999999885 9999999999999999


Q ss_pred             eCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703          160 KDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       160 ~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      ++|+...++.|..+.    ++|..||++++
T Consensus        77 ~~~~~~~~~~g~~~~----~~l~~~i~~~~  102 (102)
T TIGR01126        77 PKGKKPVDYEGGRDL----EAIVEFVNEKS  102 (102)
T ss_pred             cCCCcceeecCCCCH----HHHHHHHHhcC
Confidence            877667899999888    88999998764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.85  E-value=1.7e-20  Score=138.96  Aligned_cols=112  Identities=13%  Similarity=0.250  Sum_probs=94.2

Q ss_pred             CccceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCC
Q 029703           73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISK  152 (189)
Q Consensus        73 ~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~  152 (189)
                      ....+..+++.++|.+.+..+ ..+.++||+||++||++|+.+.|.|.++++++ +.+.|++||++..  .++.+|+|.+
T Consensus        60 ~~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-~~vkF~kVd~d~~--~l~~~f~v~~  135 (175)
T cd02987          60 RFGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-PAVKFCKIRASAT--GASDEFDTDA  135 (175)
T ss_pred             CCCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-CCeEEEEEeccch--hhHHhCCCCC
Confidence            345677788778999988532 23459999999999999999999999999999 6899999999986  4999999999


Q ss_pred             CCeEEEEeCCeEEEEEeCCCc---chhhHHHHHHHHHhh
Q 029703          153 MPTIQIWKDGEMKSEVIGGHK---AWLVIEEVREMIKKF  188 (189)
Q Consensus       153 ~Pt~~~~~~G~~~~~~~g~~~---~~~~~~~l~~~i~~~  188 (189)
                      +||+++|++|+.+.++.|...   .+...+.|+.+|.++
T Consensus       136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence            999999999999999988653   356667888887653

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.85  E-value=1e-20  Score=144.74  Aligned_cols=106  Identities=20%  Similarity=0.410  Sum_probs=90.8

Q ss_pred             eeecCChhHHHHHHHHhh-cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCe
Q 029703           77 LEPINDSDHLDQILLRAQ-ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~-~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      +..+ +.++|++.+.... ..+++++|+||++||++|+.+.|.|+++++++++.+.++.+|++.+++ ++++|+|+++||
T Consensus        32 Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~-l~~~~~I~~~PT  109 (224)
T PTZ00443         32 LVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALN-LAKRFAIKGYPT  109 (224)
T ss_pred             cEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH-HHHHcCCCcCCE
Confidence            4444 4779999885321 136899999999999999999999999999998889999999999885 999999999999


Q ss_pred             EEEEeCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +++|++|+.+..+.|..+.    +.|.+|+.+.
T Consensus       110 l~~f~~G~~v~~~~G~~s~----e~L~~fi~~~  138 (224)
T PTZ00443        110 LLLFDKGKMYQYEGGDRST----EKLAAFALGD  138 (224)
T ss_pred             EEEEECCEEEEeeCCCCCH----HHHHHHHHHH
Confidence            9999999988888888887    7788887654

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.85  E-value=1.5e-20  Score=127.55  Aligned_cols=94  Identities=26%  Similarity=0.512  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC--CCeEEEEEEccC--ChHHHHHhCCCCCCCeEEE
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNK--VSKDLVKRGNISKMPTIQI  158 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~--~~~~l~~~~~i~~~Pt~~~  158 (189)
                      ..+|+..+    .++++++|+||++||++|+.+.|.+.++++.+.  +.+.++.+|++.  +. .++++|+|.++||+++
T Consensus         7 ~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~i~~~Pt~~~   81 (104)
T cd02997           7 DEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHD-ALKEEYNVKGFPTFKY   81 (104)
T ss_pred             hHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccH-HHHHhCCCccccEEEE
Confidence            56899888    567799999999999999999999999999885  568899999998  66 4999999999999999


Q ss_pred             EeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703          159 WKDGEMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       159 ~~~G~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      |++|+.+.++.|..+.    +.|.+||
T Consensus        82 ~~~g~~~~~~~g~~~~----~~l~~~l  104 (104)
T cd02997          82 FENGKFVEKYEGERTA----EDIIEFM  104 (104)
T ss_pred             EeCCCeeEEeCCCCCH----HHHHhhC
Confidence            9999999999999887    7777764

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.85  E-value=2.8e-20  Score=134.40  Aligned_cols=92  Identities=18%  Similarity=0.462  Sum_probs=80.2

Q ss_pred             ceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHhCCCCC--
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISK--  152 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~~~~~i~~--  152 (189)
                      .+..++ .++|++.+..  ..+++++|+||++||++|+.+.|.++++++++++ ++.|++||++++++ ++++|+|.+  
T Consensus        29 ~v~~l~-~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-la~~~~V~~~~  104 (152)
T cd02962          29 HIKYFT-PKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-VAEKFRVSTSP  104 (152)
T ss_pred             ccEEcC-HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-HHHHcCceecC
Confidence            344444 6789988743  3467999999999999999999999999999863 59999999999985 999999988  


Q ss_pred             ----CCeEEEEeCCeEEEEEeCC
Q 029703          153 ----MPTIQIWKDGEMKSEVIGG  171 (189)
Q Consensus       153 ----~Pt~~~~~~G~~~~~~~g~  171 (189)
                          +||+++|++|+++.++.|.
T Consensus       105 ~v~~~PT~ilf~~Gk~v~r~~G~  127 (152)
T cd02962         105 LSKQLPTIILFQGGKEVARRPYY  127 (152)
T ss_pred             CcCCCCEEEEEECCEEEEEEecc
Confidence                9999999999999999984

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.85  E-value=2.1e-20  Score=127.27  Aligned_cols=85  Identities=20%  Similarity=0.305  Sum_probs=74.9

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG  162 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G  162 (189)
                      .+++++.+..  .+++++||.|+++||+||+.+.|.++++++++++.+.|++||+++.++ ++++|+|.+.||+++|++|
T Consensus         2 ~~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-va~~y~I~amPtfvffkng   78 (114)
T cd02986           2 KKEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-YTQYFDISYIPSTIFFFNG   78 (114)
T ss_pred             HHHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-HHHhcCceeCcEEEEEECC
Confidence            4678888865  369999999999999999999999999999995449999999999996 9999999999999999999


Q ss_pred             eEEEEEeC
Q 029703          163 EMKSEVIG  170 (189)
Q Consensus       163 ~~~~~~~g  170 (189)
                      +.+..-.|
T Consensus        79 kh~~~d~g   86 (114)
T cd02986          79 QHMKVDYG   86 (114)
T ss_pred             cEEEEecC
Confidence            87754333

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.84  E-value=3.1e-20  Score=125.87  Aligned_cols=96  Identities=23%  Similarity=0.461  Sum_probs=84.6

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeC
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKD  161 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~  161 (189)
                      +.++|++.+.   ..+++++|+||++||++|+.+.|.|.++++++.+.+.++.+|++.+++ ++++|+|+++|++++|++
T Consensus         6 ~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~i~~~P~~~~~~~   81 (103)
T cd03001           6 TDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS-LAQQYGVRGFPTIKVFGA   81 (103)
T ss_pred             CHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH-HHHHCCCCccCEEEEECC
Confidence            4678988874   456679999999999999999999999999997889999999999885 999999999999999998


Q ss_pred             C-eEEEEEeCCCcchhhHHHHHHHH
Q 029703          162 G-EMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       162 G-~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      | +....+.|..+.    ++|.+|+
T Consensus        82 ~~~~~~~~~g~~~~----~~l~~~~  102 (103)
T cd03001          82 GKNSPQDYQGGRTA----KAIVSAA  102 (103)
T ss_pred             CCcceeecCCCCCH----HHHHHHh
Confidence            8 556688898887    7888775

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.84  E-value=4.3e-20  Score=124.25  Aligned_cols=93  Identities=31%  Similarity=0.534  Sum_probs=83.7

Q ss_pred             HHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEE
Q 029703           86 LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus        86 ~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      ++..+.   +.+++++|+||++||++|+.+.|.++++++++++++.++.+|++..++ ++++++|.++||+++|++|+.+
T Consensus         5 ~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~-l~~~~~v~~vPt~~i~~~g~~v   80 (97)
T cd02949           5 LRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE-IAEAAGIMGTPTVQFFKDKELV   80 (97)
T ss_pred             HHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH-HHHHCCCeeccEEEEEECCeEE
Confidence            445554   578999999999999999999999999999997789999999999885 9999999999999999999999


Q ss_pred             EEEeCCCcchhhHHHHHHHHH
Q 029703          166 SEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       166 ~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      .++.|..+.    ++|.++|+
T Consensus        81 ~~~~g~~~~----~~~~~~l~   97 (97)
T cd02949          81 KEISGVKMK----SEYREFIE   97 (97)
T ss_pred             EEEeCCccH----HHHHHhhC
Confidence            999999988    77777763

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.84  E-value=1.7e-20  Score=127.65  Aligned_cols=95  Identities=22%  Similarity=0.349  Sum_probs=81.7

Q ss_pred             hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEccCC---hHHHHHhCCCCCCCeEE
Q 029703           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISKMPTIQ  157 (189)
Q Consensus        84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~  157 (189)
                      +.|++.+    .++++++|+||++||++|+.+.+.+   .++++.+++++.++.+|++..   ...++++|+|.++||++
T Consensus         2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~   77 (104)
T cd02953           2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL   77 (104)
T ss_pred             HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence            4677777    6889999999999999999999988   678888866899999999873   22589999999999999


Q ss_pred             EEe--CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          158 IWK--DGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       158 ~~~--~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      +|+  +|+.+.++.|..+.    ++|.++|+
T Consensus        78 ~~~~~~g~~~~~~~G~~~~----~~l~~~l~  104 (104)
T cd02953          78 FYGPGGEPEPLRLPGFLTA----DEFLEALE  104 (104)
T ss_pred             EECCCCCCCCcccccccCH----HHHHHHhC
Confidence            997  79999999999998    77777663

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.83  E-value=7.7e-20  Score=124.51  Aligned_cols=95  Identities=20%  Similarity=0.417  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCChHHHHHhCCCCCCCeEEEE
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW  159 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~  159 (189)
                      .++|++..     ++++++|.||++||++|+.+.|.|+++++.++   ..+.++.+|++..+. ++++|+|.++||+++|
T Consensus         6 ~~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~I~~~Pt~~l~   79 (104)
T cd03000           6 DDSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS-IASEFGVRGYPTIKLL   79 (104)
T ss_pred             hhhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh-HHhhcCCccccEEEEE
Confidence            46777643     57899999999999999999999999999983   358999999998885 9999999999999999


Q ss_pred             eCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          160 KDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       160 ~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      ++|. ..++.|..+.    +.|.+|+++.
T Consensus        80 ~~~~-~~~~~G~~~~----~~l~~~~~~~  103 (104)
T cd03000          80 KGDL-AYNYRGPRTK----DDIVEFANRV  103 (104)
T ss_pred             cCCC-ceeecCCCCH----HHHHHHHHhh
Confidence            8774 5678898887    8888888764

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.83  E-value=9.1e-20  Score=125.23  Aligned_cols=99  Identities=14%  Similarity=0.310  Sum_probs=80.7

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHH-hCCCCCCCeEEEE
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVK-RGNISKMPTIQIW  159 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~~-~~~i~~~Pt~~~~  159 (189)
                      +.++|+.++... .++++++|.||++||++|+.+.|.|.++++.+++ ++.++.||++.....++. .|+|+++||+++|
T Consensus         7 ~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f   85 (109)
T cd02993           7 SRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFF   85 (109)
T ss_pred             cHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEE
Confidence            366898887432 4679999999999999999999999999999975 499999999984334776 5999999999999


Q ss_pred             eC-CeEEEEEeCC-CcchhhHHHHHHHH
Q 029703          160 KD-GEMKSEVIGG-HKAWLVIEEVREMI  185 (189)
Q Consensus       160 ~~-G~~~~~~~g~-~~~~~~~~~l~~~i  185 (189)
                      ++ +.....|.|. ++.    +.|..||
T Consensus        86 ~~~~~~~~~y~g~~~~~----~~l~~f~  109 (109)
T cd02993          86 PKNSRQPIKYPSEQRDV----DSLLMFV  109 (109)
T ss_pred             cCCCCCceeccCCCCCH----HHHHhhC
Confidence            75 4567789885 666    6777664

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.81  E-value=2.3e-19  Score=121.63  Aligned_cols=94  Identities=21%  Similarity=0.470  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC--CeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~  160 (189)
                      .++|++.+.   ..+++++|+||++||++|+.+.|.+.++++.+++  ++.++.+|++.+.  ++..+++.++||+++|+
T Consensus         7 ~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~~Pt~~~~~   81 (104)
T cd02995           7 GKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND--VPSEFVVDGFPTILFFP   81 (104)
T ss_pred             hhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh--hhhhccCCCCCEEEEEc
Confidence            679988884   4568999999999999999999999999999854  5999999999863  78899999999999999


Q ss_pred             CCe--EEEEEeCCCcchhhHHHHHHHH
Q 029703          161 DGE--MKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       161 ~G~--~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      +|+  ...++.|..+.    +.|.+||
T Consensus        82 ~~~~~~~~~~~g~~~~----~~l~~fi  104 (104)
T cd02995          82 AGDKSNPIKYEGDRTL----EDLIKFI  104 (104)
T ss_pred             CCCcCCceEccCCcCH----HHHHhhC
Confidence            876  56789998887    7777664

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.81  E-value=3e-19  Score=121.18  Aligned_cols=95  Identities=26%  Similarity=0.560  Sum_probs=81.9

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC--CCeEEEEEEccC-ChHHHHHhCCCCCCCeEEEE
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNK-VSKDLVKRGNISKMPTIQIW  159 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~-~~~~l~~~~~i~~~Pt~~~~  159 (189)
                      .++|++.+.   ..+++++|.||++||++|+.+.|.+.++++.++  +++.++.+|++. ++. ++++|+|.++|++++|
T Consensus         7 ~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~i~~~P~~~~~   82 (105)
T cd02998           7 DSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD-LAKKYGVSGFPTLKFF   82 (105)
T ss_pred             hhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh-hHHhCCCCCcCEEEEE
Confidence            568888773   356699999999999999999999999999985  569999999999 775 9999999999999999


Q ss_pred             eCC-eEEEEEeCCCcchhhHHHHHHHH
Q 029703          160 KDG-EMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       160 ~~G-~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      ++| +....+.|..+.    ++|.+||
T Consensus        83 ~~~~~~~~~~~g~~~~----~~l~~~i  105 (105)
T cd02998          83 PKGSTEPVKYEGGRDL----EDLVKFV  105 (105)
T ss_pred             eCCCCCccccCCccCH----HHHHhhC
Confidence            855 667788888877    7777764

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.81  E-value=4.9e-19  Score=122.34  Aligned_cols=88  Identities=19%  Similarity=0.255  Sum_probs=76.5

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEE--EEeCCC
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKS--EVIGGH  172 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~--~~~g~~  172 (189)
                      ..++.++|+||++||++|+.+.|.++++++.+ +.+.+..+|++..+. ++.+|+|.++||+++|++|....  ++.|..
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~-l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~   97 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKE-KAEKYGVERVPTTIFLQDGGKDGGIRYYGLP   97 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHH-HHHHcCCCcCCEEEEEeCCeecceEEEEecC
Confidence            56778999999999999999999999999887 789999999999885 99999999999999999765544  788988


Q ss_pred             cchhhHHHHHHHHHhh
Q 029703          173 KAWLVIEEVREMIKKF  188 (189)
Q Consensus       173 ~~~~~~~~l~~~i~~~  188 (189)
                      +.    +++.++|+..
T Consensus        98 ~~----~el~~~i~~i  109 (113)
T cd02975          98 AG----YEFASLIEDI  109 (113)
T ss_pred             ch----HHHHHHHHHH
Confidence            88    6677666653

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.81  E-value=4e-19  Score=119.07  Aligned_cols=95  Identities=29%  Similarity=0.552  Sum_probs=83.9

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHh--CCCeEEEEEEccCChHHHHHhCCCCCCCeEEEE
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW  159 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~--~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~  159 (189)
                      +.++|.+.+    .++++++|+||++||++|+.+.|.+.++++.+  .+.+.++.+|++.+.. ++++|+|.++||+++|
T Consensus         4 ~~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~i~~~Pt~~~~   78 (101)
T cd02961           4 TDDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND-LCSEYGVRGYPTIKLF   78 (101)
T ss_pred             cHHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH-HHHhCCCCCCCEEEEE
Confidence            356899988    56779999999999999999999999999999  5789999999999775 9999999999999999


Q ss_pred             eCC-eEEEEEeCCCcchhhHHHHHHHH
Q 029703          160 KDG-EMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       160 ~~G-~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      ++| +...++.|..+.    +.+.+|+
T Consensus        79 ~~~~~~~~~~~g~~~~----~~i~~~~  101 (101)
T cd02961          79 PNGSKEPVKYEGPRTL----ESLVEFI  101 (101)
T ss_pred             cCCCcccccCCCCcCH----HHHHhhC
Confidence            866 788899998877    6776653

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.80  E-value=1.7e-18  Score=121.07  Aligned_cols=95  Identities=20%  Similarity=0.243  Sum_probs=78.1

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh----------HHHHHhCC--
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------KDLVKRGN--  149 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------~~l~~~~~--  149 (189)
                      +.++|.+.+    .+++.++|+|+++|||+|+.+.|.|.+++++  .++.++.+|++...          .++.++|+  
T Consensus        12 t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~   85 (122)
T TIGR01295        12 TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP   85 (122)
T ss_pred             CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence            367899988    6889999999999999999999999999998  45778888888532          13567765  


Q ss_pred             --CCCCCeEEEEeCCeEEEEEeCCC-cchhhHHHHHHHHH
Q 029703          150 --ISKMPTIQIWKDGEMKSEVIGGH-KAWLVIEEVREMIK  186 (189)
Q Consensus       150 --i~~~Pt~~~~~~G~~~~~~~g~~-~~~~~~~~l~~~i~  186 (189)
                        |.++||+++|++|+.+.+..|.. +.    ++|.+|+.
T Consensus        86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~----~~l~~~~~  121 (122)
T TIGR01295        86 TSFMGTPTFVHITDGKQVSVRCGSSTTA----QELQDIAA  121 (122)
T ss_pred             ccCCCCCEEEEEeCCeEEEEEeCCCCCH----HHHHHHhh
Confidence              45699999999999999999953 45    78888764

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.79  E-value=1.4e-18  Score=122.03  Aligned_cols=96  Identities=17%  Similarity=0.304  Sum_probs=77.5

Q ss_pred             hHHHHHHHHhhcCC-CcEEEEEecCCChhhhhhhHHHH---HHHHHhCCCeEEEEEEccCC------------hHHHHHh
Q 029703           84 DHLDQILLRAQELS-QPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNKV------------SKDLVKR  147 (189)
Q Consensus        84 ~~~~~~~~~a~~~~-k~~vv~f~a~wC~~C~~~~~~l~---~~~~~~~~~v~~~~vd~~~~------------~~~l~~~  147 (189)
                      +.++++.    .++ ++++|+||++||++|+.+.|.+.   .+.+.+.+++.++.+|++..            ..+++.+
T Consensus         4 ~~~~~a~----~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~   79 (125)
T cd02951           4 EDLAEAA----ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK   79 (125)
T ss_pred             HHHHHHH----HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence            4555555    678 99999999999999999999884   56666656788999998864            2358999


Q ss_pred             CCCCCCCeEEEEe-C-CeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          148 GNISKMPTIQIWK-D-GEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       148 ~~i~~~Pt~~~~~-~-G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      |+|.++||+++|. + |+++.++.|..+.    +.+.++|+.
T Consensus        80 ~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~----~~~~~~l~~  117 (125)
T cd02951          80 YRVRFTPTVIFLDPEGGKEIARLPGYLPP----DEFLAYLEY  117 (125)
T ss_pred             cCCccccEEEEEcCCCCceeEEecCCCCH----HHHHHHHHH
Confidence            9999999999997 5 7999999999888    455555443

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=3.2e-19  Score=148.30  Aligned_cols=103  Identities=25%  Similarity=0.506  Sum_probs=92.5

Q ss_pred             ceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCChHHHHHhCCCCC
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISK  152 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~  152 (189)
                      .+.. .+.++|+..+    ..+..++|.||||||+||+++.|.+++.+..++   +.+.+++||++.+. ++|.+|+|++
T Consensus        26 ~Vl~-Lt~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~-~~~~~y~v~g   99 (493)
T KOG0190|consen   26 DVLV-LTKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES-DLASKYEVRG   99 (493)
T ss_pred             ceEE-EecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh-hhHhhhcCCC
Confidence            3443 4478999999    789999999999999999999999999999984   37899999999997 5999999999


Q ss_pred             CCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          153 MPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       153 ~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +||+.+|+||+....|.|.+..    +.|..|+.+.
T Consensus       100 yPTlkiFrnG~~~~~Y~G~r~a----dgIv~wl~kq  131 (493)
T KOG0190|consen  100 YPTLKIFRNGRSAQDYNGPREA----DGIVKWLKKQ  131 (493)
T ss_pred             CCeEEEEecCCcceeccCcccH----HHHHHHHHhc
Confidence            9999999999988899999999    9999998763

>PTZ00102 disulphide isomerase; Provisional

Probab=99.79  E-value=4.8e-19  Score=150.08  Aligned_cols=156  Identities=17%  Similarity=0.292  Sum_probs=108.6

Q ss_pred             cCCccccCCCccccceecCceEEEeCCC----cccc---ccccceeeeecCCCC-C--CC--ccceeecCChhHHHHHHH
Q 029703           24 FQQPWSSGSSSCLLLQKNSAFFWVDTAS----RSKS---ARRDVRVEALWPDLS-R--PT--SVELEPINDSDHLDQILL   91 (189)
Q Consensus        24 ~~~~~~i~g~Ptl~~~~~~~~~~~~g~~----~~~~---~~~~~~~~~~~~~~~-~--~~--~~~~~~i~~~~~~~~~~~   91 (189)
                      .+..+++.++|++.+........+.+..    ..+.   .-+.+..+...+... .  |.  ...+..+ +.++|++.+.
T Consensus       294 ~~~~~gi~~~P~~~i~~~~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l-~~~~f~~~v~  372 (477)
T PTZ00102        294 AKEHLLIEEFPGLAYQSPAGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVV-VGNTFEEIVF  372 (477)
T ss_pred             HHHhcCcccCceEEEEcCCcccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEe-cccchHHHHh
Confidence            5678899999999887643322232221    0111   001111111111111 1  11  1123333 3678988864


Q ss_pred             HhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC--CCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEE-EEE
Q 029703           92 RAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMK-SEV  168 (189)
Q Consensus        92 ~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~-~~~  168 (189)
                         ..+++++|+|||+||++|+.+.|.|+++++.++  +.+.++.+|++.+.. .+++|+++++||+++|++|..+ .++
T Consensus       373 ---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~-~~~~~~v~~~Pt~~~~~~~~~~~~~~  448 (477)
T PTZ00102        373 ---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET-PLEEFSWSAFPTILFVKAGERTPIPY  448 (477)
T ss_pred             ---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc-chhcCCCcccCeEEEEECCCcceeEe
Confidence               578999999999999999999999999999885  358999999998875 7999999999999999866544 589


Q ss_pred             eCCCcchhhHHHHHHHHHhh
Q 029703          169 IGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       169 ~g~~~~~~~~~~l~~~i~~~  188 (189)
                      .|..+.    +.|.+||+++
T Consensus       449 ~G~~~~----~~l~~~i~~~  464 (477)
T PTZ00102        449 EGERTV----EGFKEFVNKH  464 (477)
T ss_pred             cCcCCH----HHHHHHHHHc
Confidence            999988    8888888875

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.78  E-value=5.1e-18  Score=111.65  Aligned_cols=91  Identities=31%  Similarity=0.675  Sum_probs=82.0

Q ss_pred             HHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM  164 (189)
Q Consensus        85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~  164 (189)
                      +|++.+    ..+++++|.||++||++|+.+.+.++++++. .+++.++.+|++.... ++++|++.++|+++++++|+.
T Consensus         2 ~~~~~~----~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~~~v~~~P~~~~~~~g~~   75 (93)
T cd02947           2 EFEELI----KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPE-LAEEYGVRSIPTFLFFKNGKE   75 (93)
T ss_pred             chHHHH----hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChh-HHHhcCcccccEEEEEECCEE
Confidence            566777    5669999999999999999999999999988 5889999999999875 999999999999999999999


Q ss_pred             EEEEeCCCcchhhHHHHHHHH
Q 029703          165 KSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       165 ~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      +..+.|..+.    +.|.++|
T Consensus        76 ~~~~~g~~~~----~~l~~~i   92 (93)
T cd02947          76 VDRVVGADPK----EELEEFL   92 (93)
T ss_pred             EEEEecCCCH----HHHHHHh
Confidence            9999998887    7777776

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.78  E-value=3.2e-18  Score=128.41  Aligned_cols=108  Identities=17%  Similarity=0.239  Sum_probs=87.3

Q ss_pred             CccceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCC
Q 029703           73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISK  152 (189)
Q Consensus        73 ~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~  152 (189)
                      ....+..++ .++|...+..+ ..+.+|||+||++||++|+.+.|.|++++.+| +.+.|++||++.    ...+|+|.+
T Consensus        80 ~~G~v~eis-~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~-~~vkFvkI~ad~----~~~~~~i~~  152 (192)
T cd02988          80 KFGEVYEIS-KPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKF-PDTKFVKIISTQ----CIPNYPDKN  152 (192)
T ss_pred             CCCeEEEeC-HHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHC-CCCEEEEEEhHH----hHhhCCCCC
Confidence            344566665 56787766432 23469999999999999999999999999999 679999999974    368999999


Q ss_pred             CCeEEEEeCCeEEEEEeCCCcc---hhhHHHHHHHHHh
Q 029703          153 MPTIQIWKDGEMKSEVIGGHKA---WLVIEEVREMIKK  187 (189)
Q Consensus       153 ~Pt~~~~~~G~~~~~~~g~~~~---~~~~~~l~~~i~~  187 (189)
                      +||+++|++|+.+.++.|....   +...+.|+.+|.+
T Consensus       153 lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         153 LPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             CCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            9999999999999999986432   4556778777754

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.77  E-value=2.6e-18  Score=131.52  Aligned_cols=145  Identities=15%  Similarity=0.168  Sum_probs=101.1

Q ss_pred             cccCCccccCCCccccceecCceE--EEeCCCccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCCCc
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAFF--WVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQP   99 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~   99 (189)
                      ...++.|+|.++||+.+|++|...  .+.|.........-  +.... ......     ...+.+..+.+-    ..+++
T Consensus        67 ~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~--i~~~~-~~~~~~-----~~L~~~~~~~l~----~~~~p  134 (215)
T TIGR02187        67 KEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAAL--IEDIV-RVSQGE-----PGLSEKTVELLQ----SLDEP  134 (215)
T ss_pred             HHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHH--HHHHH-HhcCCC-----CCCCHHHHHHHH----hcCCC
Confidence            456688999999999999998763  45564333221110  11111 111110     111233333333    23444


Q ss_pred             -EEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhH
Q 029703          100 -ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI  178 (189)
Q Consensus       100 -~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~  178 (189)
                       .++.||++||++|+.+.+.+++++.+. +++.+..+|.+..+. ++++|+|.++||++++++|+.   +.|..+.    
T Consensus       135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~-~~~~~~V~~vPtl~i~~~~~~---~~G~~~~----  205 (215)
T TIGR02187       135 VRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPD-LAEKYGVMSVPKIVINKGVEE---FVGAYPE----  205 (215)
T ss_pred             cEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHH-HHHHhCCccCCEEEEecCCEE---EECCCCH----
Confidence             555599999999999999999999885 789999999999885 999999999999999988863   8898887    


Q ss_pred             HHHHHHHHh
Q 029703          179 EEVREMIKK  187 (189)
Q Consensus       179 ~~l~~~i~~  187 (189)
                      ++|.++|.+
T Consensus       206 ~~l~~~l~~  214 (215)
T TIGR02187       206 EQFLEYILS  214 (215)
T ss_pred             HHHHHHHHh
Confidence            788888764

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=9.4e-19  Score=144.71  Aligned_cols=160  Identities=17%  Similarity=0.291  Sum_probs=118.0

Q ss_pred             ccccccCCccccCCCccccceecC-ceEEEeCCCccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCC
Q 029703           19 EGKQQFQQPWSSGSSSCLLLQKNS-AFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELS   97 (189)
Q Consensus        19 ~~~~~~~~~~~i~g~Ptl~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~   97 (189)
                      +..+..|+.|+|.|||||.+|+++ ....|.|.+..+..... ......+.........+..++ ..+|...+.   ..+
T Consensus        88 ~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~---~~~  162 (383)
T KOG0191|consen   88 DEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAESLAEF-LIKELEPSVKKLVEGEVFELT-KDNFDETVK---DSD  162 (383)
T ss_pred             hhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHHHHHHH-HHHhhccccccccCCceEEcc-ccchhhhhh---ccC
Confidence            445778999999999999999999 55778775544221111 111111111111111233333 567777664   578


Q ss_pred             CcEEEEEecCCChhhhhhhHHHHHHHHHhC--CCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE-EEEEeCCCcc
Q 029703           98 QPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM-KSEVIGGHKA  174 (189)
Q Consensus        98 k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~-~~~~~g~~~~  174 (189)
                      ..++|.||+|||++|+.+.|.|++++..++  ..+.++.+|++.... ++.+++|.++||+++|++|.. ...+.|.++.
T Consensus       163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~-~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~  241 (383)
T KOG0191|consen  163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKS-LASRLEVRGYPTLKLFPPGEEDIYYYSGLRDS  241 (383)
T ss_pred             cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHH-HhhhhcccCCceEEEecCCCcccccccccccH
Confidence            899999999999999999999999999884  679999999997664 999999999999999998777 7788888888


Q ss_pred             hhhHHHHHHHHHhh
Q 029703          175 WLVIEEVREMIKKF  188 (189)
Q Consensus       175 ~~~~~~l~~~i~~~  188 (189)
                          +.+..|+++.
T Consensus       242 ----~~i~~~v~~~  251 (383)
T KOG0191|consen  242 ----DSIVSFVEKK  251 (383)
T ss_pred             ----HHHHHHHHhh
Confidence                8888887653

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.77  E-value=2.3e-18  Score=118.43  Aligned_cols=96  Identities=13%  Similarity=0.198  Sum_probs=78.3

Q ss_pred             CChhHHHHHHHHhhcCCCcEEEEEec--CCCh---hhhhhhHHHHHHHHHhCCCeEEEEEEccC----ChHHHHHhCCCC
Q 029703           81 NDSDHLDQILLRAQELSQPILIDWMA--SWCR---KCIYLKPKLEKLAAEFDTKLKFYYVDVNK----VSKDLVKRGNIS  151 (189)
Q Consensus        81 ~~~~~~~~~~~~a~~~~k~~vv~f~a--~wC~---~C~~~~~~l~~~~~~~~~~v~~~~vd~~~----~~~~l~~~~~i~  151 (189)
                      .+.++|++.+    .+++.+||.|||  |||+   +|+.+.|.+.+.+.    .+.+++||+++    ...+||++|+|+
T Consensus         6 L~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~   77 (116)
T cd03007           6 LDTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD   77 (116)
T ss_pred             CChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence            3478999999    789999999999  8888   77777777765443    48899999953    223599999999


Q ss_pred             --CCCeEEEEeCCe--EEEEEeCC-CcchhhHHHHHHHHHhh
Q 029703          152 --KMPTIQIWKDGE--MKSEVIGG-HKAWLVIEEVREMIKKF  188 (189)
Q Consensus       152 --~~Pt~~~~~~G~--~~~~~~g~-~~~~~~~~~l~~~i~~~  188 (189)
                        ++||+++|++|.  ....|.|. ++.    +.|.+||.++
T Consensus        78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~----~~lv~~v~~~  115 (116)
T cd03007          78 KESYPVIYLFHGGDFENPVPYSGADVTV----DALQRFLKGN  115 (116)
T ss_pred             cCCCCEEEEEeCCCcCCCccCCCCcccH----HHHHHHHHhc
Confidence              999999999885  44689996 888    8899998764

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.75  E-value=1.4e-17  Score=140.30  Aligned_cols=98  Identities=29%  Similarity=0.562  Sum_probs=87.8

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCChHHHHHhCCCCCCCeEEE
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKMPTIQI  158 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~  158 (189)
                      +.++|++++    .++++++|+|||+||++|+.+.|.+.++++.+.   +++.|+.||++.+.+ ++++|+|.++||+++
T Consensus         7 ~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~Pt~~~   81 (462)
T TIGR01130         7 TKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD-LAQKYGVSGYPTLKI   81 (462)
T ss_pred             CHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH-HHHhCCCccccEEEE
Confidence            477999999    678899999999999999999999999998874   349999999999985 999999999999999


Q ss_pred             EeCCeE-EEEEeCCCcchhhHHHHHHHHHhh
Q 029703          159 WKDGEM-KSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       159 ~~~G~~-~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      |++|+. +.++.|..+.    +.|.+|+.+.
T Consensus        82 ~~~g~~~~~~~~g~~~~----~~l~~~i~~~  108 (462)
T TIGR01130        82 FRNGEDSVSDYNGPRDA----DGIVKYMKKQ  108 (462)
T ss_pred             EeCCccceeEecCCCCH----HHHHHHHHHh
Confidence            999987 7899999988    7788887764

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.75  E-value=1.3e-17  Score=139.13  Aligned_cols=106  Identities=13%  Similarity=0.266  Sum_probs=85.4

Q ss_pred             eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHH-HhCCCCCCC
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLV-KRGNISKMP  154 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~-~~~~i~~~P  154 (189)
                      +..+ +.++|++.+... ..++++||+|||+||++|+.|.|.|+++++++++ .+.|++||++.+...++ ++|+|.++|
T Consensus       353 Vv~L-~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P  430 (463)
T TIGR00424       353 VVSL-SRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP  430 (463)
T ss_pred             eEEC-CHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence            4444 467999998422 4789999999999999999999999999999965 48999999997643344 789999999


Q ss_pred             eEEEEeCCe-EEEEEe-CCCcchhhHHHHHHHHHhh
Q 029703          155 TIQIWKDGE-MKSEVI-GGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       155 t~~~~~~G~-~~~~~~-g~~~~~~~~~~l~~~i~~~  188 (189)
                      |+++|++|. ....|. |.++.    +.|..||+.+
T Consensus       431 Tii~Fk~g~~~~~~Y~~g~R~~----e~L~~Fv~~~  462 (463)
T TIGR00424       431 TILFFPKHSSRPIKYPSEKRDV----DSLMSFVNLL  462 (463)
T ss_pred             eEEEEECCCCCceeCCCCCCCH----HHHHHHHHhh
Confidence            999999875 334676 47887    8888888753

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.75  E-value=4.8e-18  Score=118.01  Aligned_cols=102  Identities=17%  Similarity=0.316  Sum_probs=77.1

Q ss_pred             HHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCC--CCeEEEEe-C
Q 029703           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISK--MPTIQIWK-D  161 (189)
Q Consensus        85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~--~Pt~~~~~-~  161 (189)
                      ++++.+..|+.+++++||+|||+||++|+.+.|.+.+..........|+.+|++..+......|++.+  +||+++|. +
T Consensus         7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~   86 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS   86 (117)
T ss_pred             eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence            57777777768899999999999999999999999997665434456777777766534678899986  99999996 9


Q ss_pred             CeEEEE---EeCCCcchhhHHHHHHHHH
Q 029703          162 GEMKSE---VIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       162 G~~~~~---~~g~~~~~~~~~~l~~~i~  186 (189)
                      |+++.+   ..|..+...+.+.|...++
T Consensus        87 Gk~~~~~~~~~~~~~~~~f~~~~~~~~~  114 (117)
T cd02959          87 GDVHPEIINKKGNPNYKYFYSSAAQVTE  114 (117)
T ss_pred             CCCchhhccCCCCccccccCCCHHHHHh
Confidence            999774   4555555444444544443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.75  E-value=1.8e-17  Score=140.50  Aligned_cols=98  Identities=23%  Similarity=0.480  Sum_probs=87.4

Q ss_pred             CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus        81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      .+.++|+..+    .+++.++|+|||+||++|+++.|.+.++++.+.   .++.++.+|++.+.. ++++|+|.++||++
T Consensus        37 l~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~-l~~~~~i~~~Pt~~  111 (477)
T PTZ00102         37 LTDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME-LAQEFGVRGYPTIK  111 (477)
T ss_pred             cchhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH-HHHhcCCCcccEEE
Confidence            3477999998    678899999999999999999999999988763   469999999999885 99999999999999


Q ss_pred             EEeCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          158 IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       158 ~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +|++|+.+ ++.|.++.    +.|.+|++++
T Consensus       112 ~~~~g~~~-~y~g~~~~----~~l~~~l~~~  137 (477)
T PTZ00102        112 FFNKGNPV-NYSGGRTA----DGIVSWIKKL  137 (477)
T ss_pred             EEECCceE-EecCCCCH----HHHHHHHHHh
Confidence            99998877 99999988    7888888765

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.74  E-value=2.3e-17  Score=114.31  Aligned_cols=84  Identities=20%  Similarity=0.464  Sum_probs=71.6

Q ss_pred             ecCChhHHHHHHHHhhcCCCcEEEEEec-------CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh------HHHH
Q 029703           79 PINDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS------KDLV  145 (189)
Q Consensus        79 ~i~~~~~~~~~~~~a~~~~k~~vv~f~a-------~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~------~~l~  145 (189)
                      .+.+.++|.+.+..  .++++++|+|||       +||++|+.+.|.++++++++++++.|++||++..+      .+++
T Consensus         5 ~~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~   82 (119)
T cd02952           5 AVRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR   82 (119)
T ss_pred             cccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence            35667889888853  247899999999       99999999999999999999668999999998642      2589


Q ss_pred             HhCCCC-CCCeEEEEeCCeE
Q 029703          146 KRGNIS-KMPTIQIWKDGEM  164 (189)
Q Consensus       146 ~~~~i~-~~Pt~~~~~~G~~  164 (189)
                      .+|+|. ++||+++|++|+.
T Consensus        83 ~~~~I~~~iPT~~~~~~~~~  102 (119)
T cd02952          83 TDPKLTTGVPTLLRWKTPQR  102 (119)
T ss_pred             hccCcccCCCEEEEEcCCce
Confidence            999998 9999999987754

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PTZ00062 glutaredoxin; Provisional

Probab=99.74  E-value=2.2e-17  Score=124.46  Aligned_cols=89  Identities=12%  Similarity=0.234  Sum_probs=76.5

Q ss_pred             CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~  160 (189)
                      .+.++|.+.+.   .+.+.++++|||+||++|+.+.|++.++++++ +++.|++||.+         |+|.++||+++|+
T Consensus         4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d---------~~V~~vPtfv~~~   70 (204)
T PTZ00062          4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA---------DANNEYGVFEFYQ   70 (204)
T ss_pred             CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc---------cCcccceEEEEEE
Confidence            45788888882   22488999999999999999999999999999 78999999976         8999999999999


Q ss_pred             CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          161 DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       161 ~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      +|+.+.|+.|...     .+|...+.+
T Consensus        71 ~g~~i~r~~G~~~-----~~~~~~~~~   92 (204)
T PTZ00062         71 NSQLINSLEGCNT-----STLVSFIRG   92 (204)
T ss_pred             CCEEEeeeeCCCH-----HHHHHHHHH
Confidence            9999999999875     355555543

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.74  E-value=2.9e-17  Score=113.63  Aligned_cols=79  Identities=23%  Similarity=0.449  Sum_probs=67.5

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCC-hHHHHHhCCCCCCCeEE
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKV-SKDLVKRGNISKMPTIQ  157 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~-~~~l~~~~~i~~~Pt~~  157 (189)
                      +.++|++.+.   ..+++++|+||++||++|+.+.|.|+++++.++   +.+.|+.+|++.. ..+++++|+|+++||++
T Consensus         7 ~~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~   83 (114)
T cd02992           7 DAASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLR   83 (114)
T ss_pred             CHHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEE
Confidence            4779999985   345899999999999999999999999999874   3589999998643 22589999999999999


Q ss_pred             EEeCCe
Q 029703          158 IWKDGE  163 (189)
Q Consensus       158 ~~~~G~  163 (189)
                      +|++|.
T Consensus        84 lf~~~~   89 (114)
T cd02992          84 YFPPFS   89 (114)
T ss_pred             EECCCC
Confidence            998776

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.73  E-value=5.1e-17  Score=135.62  Aligned_cols=102  Identities=15%  Similarity=0.319  Sum_probs=84.2

Q ss_pred             CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEcc-CChHHHHH-hCCCCCCCeEE
Q 029703           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN-KVSKDLVK-RGNISKMPTIQ  157 (189)
Q Consensus        81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~-~~~~~l~~-~~~i~~~Pt~~  157 (189)
                      .+.++|++++... ..++++||+||+|||++|+.|.|.|+++++++.+ ++.|+++|++ .+. .++. +|+|.++||++
T Consensus       350 Lt~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~-~la~~~~~I~~~PTil  427 (457)
T PLN02309        350 LSRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK-EFAKQELQLGSFPTIL  427 (457)
T ss_pred             CCHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch-HHHHhhCCCceeeEEE
Confidence            3477999887433 5789999999999999999999999999999854 5999999999 555 4776 69999999999


Q ss_pred             EEeCCe-EEEEEeC-CCcchhhHHHHHHHHHhh
Q 029703          158 IWKDGE-MKSEVIG-GHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       158 ~~~~G~-~~~~~~g-~~~~~~~~~~l~~~i~~~  188 (189)
                      +|++|. ....|.| .++.    +.|..||+.+
T Consensus       428 ~f~~g~~~~v~Y~~~~R~~----~~L~~fv~~~  456 (457)
T PLN02309        428 LFPKNSSRPIKYPSEKRDV----DSLLSFVNSL  456 (457)
T ss_pred             EEeCCCCCeeecCCCCcCH----HHHHHHHHHh
Confidence            998765 3346764 5777    8899998864

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.71  E-value=2e-16  Score=102.69  Aligned_cols=81  Identities=27%  Similarity=0.404  Sum_probs=71.0

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHH
Q 029703          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIE  179 (189)
Q Consensus       100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~  179 (189)
                      .+..||++||++|+.+.|.+++++++++..+.+..+|+++.++ ++++|++.++||+++  +|+.  ++.|..+.    +
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~vPt~~~--~g~~--~~~G~~~~----~   72 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-KAMEYGIMAVPAIVI--NGDV--EFIGAPTK----E   72 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-HHHHcCCccCCEEEE--CCEE--EEecCCCH----H
Confidence            4678999999999999999999999987779999999998885 899999999999986  7763  78898887    8


Q ss_pred             HHHHHHHhhC
Q 029703          180 EVREMIKKFV  189 (189)
Q Consensus       180 ~l~~~i~~~l  189 (189)
                      +|.++|++.|
T Consensus        73 ~l~~~l~~~~   82 (82)
T TIGR00411        73 ELVEAIKKRL   82 (82)
T ss_pred             HHHHHHHhhC
Confidence            8888887754

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.71  E-value=9.6e-17  Score=108.72  Aligned_cols=89  Identities=20%  Similarity=0.313  Sum_probs=77.5

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCC--CCCeEEEEeC--CeEEEEEeCC
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--KMPTIQIWKD--GEMKSEVIGG  171 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~--~~Pt~~~~~~--G~~~~~~~g~  171 (189)
                      .++++++.|+++||++|+.+.|.++++++++++++.|+.+|+++.+. +++.|++.  ++|+++++++  |+......|.
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~-~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~   89 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR-HLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE   89 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH-HHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence            37899999999999999999999999999998899999999999885 99999999  9999999987  6554444444


Q ss_pred             CcchhhHHHHHHHHHhhC
Q 029703          172 HKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       172 ~~~~~~~~~l~~~i~~~l  189 (189)
                      .+.    +.|.+||++++
T Consensus        90 ~~~----~~l~~fi~~~~  103 (103)
T cd02982          90 LTA----ESLEEFVEDFL  103 (103)
T ss_pred             cCH----HHHHHHHHhhC
Confidence            355    89999998764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.69  E-value=8.2e-17  Score=135.59  Aligned_cols=97  Identities=23%  Similarity=0.463  Sum_probs=83.6

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC---CeEEEEEEccCChHHHHHhCCCCCCCeEEE
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISKMPTIQI  158 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~  158 (189)
                      +..+|++.+.   ..+++++|+||++||++|+.+.|.++++++.+++   ++.|+++|++.+.  +.. ++|.++||+++
T Consensus       352 ~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--~~~-~~i~~~Pt~~~  425 (462)
T TIGR01130       352 VGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPP-FEVEGFPTIKF  425 (462)
T ss_pred             eCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--cCC-CCccccCEEEE
Confidence            3678988874   5689999999999999999999999999999976   7999999999875  455 99999999999


Q ss_pred             EeCCeE--EEEEeCCCcchhhHHHHHHHHHhh
Q 029703          159 WKDGEM--KSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       159 ~~~G~~--~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      |++|..  ..++.|..+.    +.|.+||+++
T Consensus       426 ~~~~~~~~~~~~~g~~~~----~~l~~~l~~~  453 (462)
T TIGR01130       426 VPAGKKSEPVPYDGDRTL----EDFSKFIAKH  453 (462)
T ss_pred             EeCCCCcCceEecCcCCH----HHHHHHHHhc
Confidence            997765  3578898887    8899998865

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.69  E-value=7.2e-17  Score=125.37  Aligned_cols=97  Identities=21%  Similarity=0.452  Sum_probs=79.6

Q ss_pred             hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~  160 (189)
                      +++++..... +.+..|+|+||||||+||+++.|+|.++.-+++   ..++++++|++..+. ++.+|+|++|||+.+|+
T Consensus        31 eDLddkFkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~a-iAnefgiqGYPTIk~~k  108 (468)
T KOG4277|consen   31 EDLDDKFKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPA-IANEFGIQGYPTIKFFK  108 (468)
T ss_pred             hhhhHHhhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchh-hHhhhccCCCceEEEec
Confidence            3444444332 567899999999999999999999999988874   358999999999995 99999999999999998


Q ss_pred             CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          161 DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       161 ~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      +|-. ..|.|.+..    +.|.+|-.+
T Consensus       109 gd~a-~dYRG~R~K----d~iieFAhR  130 (468)
T KOG4277|consen  109 GDHA-IDYRGGREK----DAIIEFAHR  130 (468)
T ss_pred             CCee-eecCCCccH----HHHHHHHHh
Confidence            7754 568888887    777776543

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.69  E-value=3.8e-16  Score=134.76  Aligned_cols=108  Identities=22%  Similarity=0.413  Sum_probs=90.7

Q ss_pred             ceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEccCCh---HHHHHhCC
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS---KDLVKRGN  149 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~  149 (189)
                      ...++.+.+++++.+..++.++|+++|+|||+||++|+.+.+..   .++.+++ +++.++++|+++++   .+++++|+
T Consensus       453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l-~~~~~v~vDvt~~~~~~~~l~~~~~  531 (571)
T PRK00293        453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL-ADTVLLQADVTANNAEDVALLKHYN  531 (571)
T ss_pred             CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh-cCCEEEEEECCCCChhhHHHHHHcC
Confidence            46677889999999987767789999999999999999998875   6777777 56899999998652   35899999


Q ss_pred             CCCCCeEEEEe-CCeEE--EEEeCCCcchhhHHHHHHHHHhh
Q 029703          150 ISKMPTIQIWK-DGEMK--SEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       150 i~~~Pt~~~~~-~G~~~--~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +.++||+++|+ +|+++  .++.|..+.    +++.+++++.
T Consensus       532 v~g~Pt~~~~~~~G~~i~~~r~~G~~~~----~~f~~~L~~~  569 (571)
T PRK00293        532 VLGLPTILFFDAQGQEIPDARVTGFMDA----AAFAAHLRQL  569 (571)
T ss_pred             CCCCCEEEEECCCCCCcccccccCCCCH----HHHHHHHHHh
Confidence            99999999996 89884  688999888    7777777653

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.69  E-value=8.3e-17  Score=124.93  Aligned_cols=98  Identities=33%  Similarity=0.625  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHh-----CCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF-----DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~-----~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      .++++..+    .....++|.|||+||+.++.+.|.+++.++.+     .+++.++.|||+.+.. ++.+|.|..|||+.
T Consensus         3 ~~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~-ia~ky~I~KyPTlK   77 (375)
T KOG0912|consen    3 SENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDD-IADKYHINKYPTLK   77 (375)
T ss_pred             cccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhH-HhhhhccccCceee
Confidence            45788888    67999999999999999999999999998877     2579999999999985 99999999999999


Q ss_pred             EEeCCeEEE-EEeCCCcchhhHHHHHHHHHhhC
Q 029703          158 IWKDGEMKS-EVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       158 ~~~~G~~~~-~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      +|+||..+. .|.|.++.    +.|.+||++.+
T Consensus        78 vfrnG~~~~rEYRg~RsV----eaL~efi~kq~  106 (375)
T KOG0912|consen   78 VFRNGEMMKREYRGQRSV----EALIEFIEKQL  106 (375)
T ss_pred             eeeccchhhhhhccchhH----HHHHHHHHHHh
Confidence            999999887 89999999    88888887653

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.1e-16  Score=133.37  Aligned_cols=96  Identities=25%  Similarity=0.504  Sum_probs=82.1

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC--CCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~  160 (189)
                      .++|++++.   .++|.++|.||||||+||+++.|.|++|++.++  +++.++++|.+.+.   .....+.++|||.+|+
T Consensus       373 gknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd---~~~~~~~~fPTI~~~p  446 (493)
T KOG0190|consen  373 GKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND---VPSLKVDGFPTILFFP  446 (493)
T ss_pred             ecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc---CccccccccceEEEec
Confidence            679999886   689999999999999999999999999999995  47999999999885   3556788899999998


Q ss_pred             CCe--EEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          161 DGE--MKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       161 ~G~--~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      .|.  ....|.|.++.    ++|..||+++
T Consensus       447 ag~k~~pv~y~g~R~l----e~~~~fi~~~  472 (493)
T KOG0190|consen  447 AGHKSNPVIYNGDRTL----EDLKKFIKKS  472 (493)
T ss_pred             CCCCCCCcccCCCcch----HHHHhhhccC
Confidence            554  35678898888    8888888753

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.66  E-value=2.7e-16  Score=108.17  Aligned_cols=88  Identities=24%  Similarity=0.495  Sum_probs=67.7

Q ss_pred             hcCCCcEEEEEecCCChhhhhhhHHHHH---HHHHhCCCeEEEEEEccCCh-------------------HHHHHhCCCC
Q 029703           94 QELSQPILIDWMASWCRKCIYLKPKLEK---LAAEFDTKLKFYYVDVNKVS-------------------KDLVKRGNIS  151 (189)
Q Consensus        94 ~~~~k~~vv~f~a~wC~~C~~~~~~l~~---~~~~~~~~v~~~~vd~~~~~-------------------~~l~~~~~i~  151 (189)
                      +.++++++++||++||++|+.+.+.+.+   +...++.++.++.++++...                   .+++++|+|.
T Consensus         2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~   81 (112)
T PF13098_consen    2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN   81 (112)
T ss_dssp             ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred             CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence            3678999999999999999999998885   44445557888888887642                   2489999999


Q ss_pred             CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHH
Q 029703          152 KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       152 ~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      ++||++++. +|+.+.++.|..+.    ++|.++|
T Consensus        82 gtPt~~~~d~~G~~v~~~~G~~~~----~~l~~~L  112 (112)
T PF13098_consen   82 GTPTIVFLDKDGKIVYRIPGYLSP----EELLKML  112 (112)
T ss_dssp             SSSEEEECTTTSCEEEEEESS--H----HHHHHHH
T ss_pred             ccCEEEEEcCCCCEEEEecCCCCH----HHHHhhC
Confidence            999999996 89999999999998    7776654

...

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.63  E-value=3.1e-15  Score=114.59  Aligned_cols=87  Identities=20%  Similarity=0.286  Sum_probs=70.3

Q ss_pred             CCCcEEEEEec---CCChhhhhhhHHHHHHHHHhCCCeE--EEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEE-EEe
Q 029703           96 LSQPILIDWMA---SWCRKCIYLKPKLEKLAAEFDTKLK--FYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKS-EVI  169 (189)
Q Consensus        96 ~~k~~vv~f~a---~wC~~C~~~~~~l~~~~~~~~~~v~--~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~-~~~  169 (189)
                      .+...++.|++   +||++|+.+.|.++++++.+ +++.  ++.+|.++.++ ++++|+|.++||+++|++|+.+. ++.
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~-~~~~i~~v~vd~~~~~~-l~~~~~V~~~Pt~~~f~~g~~~~~~~~   95 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVS-PKLKLEIYDFDTPEDKE-EAEKYGVERVPTTIILEEGKDGGIRYT   95 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC-CCceEEEEecCCcccHH-HHHHcCCCccCEEEEEeCCeeeEEEEe
Confidence            34455666877   99999999999999999998 4544  55666667775 99999999999999999999985 999


Q ss_pred             CCCcchhhHHHHHHHHHhh
Q 029703          170 GGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       170 g~~~~~~~~~~l~~~i~~~  188 (189)
                      |..+.    +++..||+.+
T Consensus        96 G~~~~----~~l~~~i~~~  110 (215)
T TIGR02187        96 GIPAG----YEFAALIEDI  110 (215)
T ss_pred             ecCCH----HHHHHHHHHH
Confidence            99887    6666666543

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.61  E-value=1.2e-14  Score=101.62  Aligned_cols=83  Identities=16%  Similarity=0.113  Sum_probs=65.6

Q ss_pred             hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEEccCChHHHHH--------hCCCCC
Q 029703           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSKDLVK--------RGNISK  152 (189)
Q Consensus        84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~-l--~~~~~~~~~~v~~~~vd~~~~~~~l~~--------~~~i~~  152 (189)
                      +.++.+.    +++|+++|+|+++||++|+.|.+. +  .++++.+..++.++++|.++.++ +++        .|++.+
T Consensus         6 eal~~Ak----~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~-~~~~~~~~~~~~~~~~G   80 (124)
T cd02955           6 EAFEKAR----REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD-VDKIYMNAAQAMTGQGG   80 (124)
T ss_pred             HHHHHHH----HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH-HHHHHHHHHHHhcCCCC
Confidence            3444444    889999999999999999999863 3  35666666689999999988764 544        368999


Q ss_pred             CCeEEEEe-CCeEEEEEeCC
Q 029703          153 MPTIQIWK-DGEMKSEVIGG  171 (189)
Q Consensus       153 ~Pt~~~~~-~G~~~~~~~g~  171 (189)
                      +||++++. +|+++....+.
T Consensus        81 ~Pt~vfl~~~G~~~~~~~~~  100 (124)
T cd02955          81 WPLNVFLTPDLKPFFGGTYF  100 (124)
T ss_pred             CCEEEEECCCCCEEeeeeec
Confidence            99999996 89998766555

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.60  E-value=1.7e-14  Score=104.47  Aligned_cols=88  Identities=14%  Similarity=0.239  Sum_probs=67.5

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh-----------HHH-HHhC---CCCCCCeEEEEe
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----------KDL-VKRG---NISKMPTIQIWK  160 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~-----------~~l-~~~~---~i~~~Pt~~~~~  160 (189)
                      .++..+|+||++||++|+++.|.+++++++++  +.++.|+.+...           ... ...|   ++.++||+++++
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID  126 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN  126 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence            46677999999999999999999999999983  556666665421           123 3445   889999999996


Q ss_pred             -CCeE-EEEEeCCCcchhhHHHHHHHHHhhC
Q 029703          161 -DGEM-KSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       161 -~G~~-~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                       +|.. ..++.|..+.    +++.+.|++.|
T Consensus       127 ~~G~~i~~~~~G~~s~----~~l~~~I~~ll  153 (153)
T TIGR02738       127 VNTRKAYPVLQGAVDE----AELANRMDEIL  153 (153)
T ss_pred             CCCCEEEEEeecccCH----HHHHHHHHHhC
Confidence             6664 5578999888    77777777654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PHA02125 thioredoxin-like protein

Probab=99.59  E-value=1.7e-14  Score=92.43  Aligned_cols=62  Identities=23%  Similarity=0.478  Sum_probs=54.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCC
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGH  172 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~  172 (189)
                      +++||++||++|+.+.|.|+++.      +.++.+|.+...+ ++++|+|.++||++   +|+.+.++.|..
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~-l~~~~~v~~~PT~~---~g~~~~~~~G~~   63 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVE-LTAKHHIRSLPTLV---NTSTLDRFTGVP   63 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHH-HHHHcCCceeCeEE---CCEEEEEEeCCC
Confidence            78999999999999999997652      4688899988874 99999999999987   788888999963

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.59  E-value=1.5e-14  Score=92.90  Aligned_cols=73  Identities=21%  Similarity=0.455  Sum_probs=59.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCC-CcchhhHH
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG-HKAWLVIE  179 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~-~~~~~~~~  179 (189)
                      .|.||++||++|+.+.|.+++++++++.++.++.+|  + .+ .+.+|++.++||+++  ||+.+  +.|. ...    +
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~-~a~~~~v~~vPti~i--~G~~~--~~G~~~~~----~   69 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MN-EILEAGVTATPGVAV--DGELV--IMGKIPSK----E   69 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HH-HHHHcCCCcCCEEEE--CCEEE--EEeccCCH----H
Confidence            378999999999999999999999997778887777  2 32 478899999999999  99877  6674 333    5


Q ss_pred             HHHHHH
Q 029703          180 EVREMI  185 (189)
Q Consensus       180 ~l~~~i  185 (189)
                      +|.+++
T Consensus        70 ~l~~~l   75 (76)
T TIGR00412        70 EIKEIL   75 (76)
T ss_pred             HHHHHh
Confidence            666665

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.58  E-value=1.7e-14  Score=103.43  Aligned_cols=73  Identities=21%  Similarity=0.436  Sum_probs=61.0

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC--------CeEEEEEEccCCh------------------------H
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--------KLKFYYVDVNKVS------------------------K  142 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--------~v~~~~vd~~~~~------------------------~  142 (189)
                      -.+|+++|+|||+||++|+.+.|.|.++++++++        ++.++.|+.+...                        .
T Consensus        23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~  102 (146)
T cd03008          23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR  102 (146)
T ss_pred             hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence            3689999999999999999999999999887632        4888888877532                        1


Q ss_pred             HHHHhCCCCCCCeEEEEe-CCeEEEE
Q 029703          143 DLVKRGNISKMPTIQIWK-DGEMKSE  167 (189)
Q Consensus       143 ~l~~~~~i~~~Pt~~~~~-~G~~~~~  167 (189)
                      .++++|++.++||++++. +|+++.+
T Consensus       103 ~l~~~y~v~~iPt~vlId~~G~Vv~~  128 (146)
T cd03008         103 ELEAQFSVEELPTVVVLKPDGDVLAA  128 (146)
T ss_pred             HHHHHcCCCCCCEEEEECCCCcEEee
Confidence            378889999999999996 9988754

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.58  E-value=3.2e-14  Score=106.55  Aligned_cols=90  Identities=17%  Similarity=0.312  Sum_probs=71.0

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH----------------------HHHHhCCCCC
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----------------------DLVKRGNISK  152 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~----------------------~l~~~~~i~~  152 (189)
                      ..+++++|+||++||++|+...|.+.++.++   ++.++.|+.++...                      .++..|+|.+
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~  142 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG  142 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence            3689999999999999999999999988653   57788888654321                      1456789999


Q ss_pred             CCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          153 MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       153 ~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      +|+.+++. +|+++.++.|..+...+.+.++..+++
T Consensus       143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~  178 (185)
T PRK15412        143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK  178 (185)
T ss_pred             CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence            99888885 999999999999985555555555543

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.58  E-value=2.3e-14  Score=121.30  Aligned_cols=87  Identities=28%  Similarity=0.443  Sum_probs=73.1

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEc----------------------------cCChHHHH
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDV----------------------------NKVSKDLV  145 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~----------------------------~~~~~~l~  145 (189)
                      .++|++||+|||+||++|+.+.|.|++++++++ +++.++.|..                            +... .++
T Consensus        54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~-~la  132 (521)
T PRK14018         54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGG-TLA  132 (521)
T ss_pred             cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccH-HHH
Confidence            468999999999999999999999999999985 3577766543                            2223 488


Q ss_pred             HhCCCCCCCeEEEE-eCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          146 KRGNISKMPTIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       146 ~~~~i~~~Pt~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      +.|+|.++||++++ ++|+++.++.|..+.    ++|.++|+
T Consensus       133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~----eeL~a~Ie  170 (521)
T PRK14018        133 QSLNISVYPSWAIIGKDGDVQRIVKGSISE----AQALALIR  170 (521)
T ss_pred             HHcCCCCcCeEEEEcCCCeEEEEEeCCCCH----HHHHHHHH
Confidence            99999999999877 599999999999998    77777776

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.57  E-value=6.2e-14  Score=96.92  Aligned_cols=104  Identities=13%  Similarity=0.186  Sum_probs=84.1

Q ss_pred             hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEEccCC-hHHHHHhCCCCCCCeEEEE
Q 029703           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKV-SKDLVKRGNISKMPTIQIW  159 (189)
Q Consensus        84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~-l--~~~~~~~~~~v~~~~vd~~~~-~~~l~~~~~i~~~Pt~~~~  159 (189)
                      .+|++++..|+.++|+++|+|+++||++|+.|... |  .++.+.++.++.++.+|.+.. ...++..|++.++|+++++
T Consensus         4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i   83 (114)
T cd02958           4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII   83 (114)
T ss_pred             CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence            46788888887899999999999999999998753 3  445555656788888888752 2358999999999999999


Q ss_pred             e--CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          160 K--DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       160 ~--~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      .  +|+.+.++.|..+++.+...|.+.+.+
T Consensus        84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~  113 (114)
T cd02958          84 DPRTGEVLKVWSGNITPEDLLSQLIEFLEE  113 (114)
T ss_pred             eCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence            5  699999999999997777777666553

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=1.8e-14  Score=119.22  Aligned_cols=88  Identities=28%  Similarity=0.559  Sum_probs=79.1

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA  174 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~  174 (189)
                      ..+++++|.||+|||++|+.+.|.|.++++.+++.+.++.||++.+.+ +|.+|+|+++||+.+|..|.....+.|..+.
T Consensus        45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~-~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~  123 (383)
T KOG0191|consen   45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKD-LCEKYGIQGFPTLKVFRPGKKPIDYSGPRNA  123 (383)
T ss_pred             ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHH-HHHhcCCccCcEEEEEcCCCceeeccCcccH
Confidence            689999999999999999999999999999998889999999999985 9999999999999999988666788888887


Q ss_pred             hhhHHHHHHHHHh
Q 029703          175 WLVIEEVREMIKK  187 (189)
Q Consensus       175 ~~~~~~l~~~i~~  187 (189)
                          +.+.+++.+
T Consensus       124 ----~~~~~~~~~  132 (383)
T KOG0191|consen  124 ----ESLAEFLIK  132 (383)
T ss_pred             ----HHHHHHHHH
Confidence                666666554

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.55  E-value=7.6e-14  Score=103.39  Aligned_cols=87  Identities=24%  Similarity=0.281  Sum_probs=67.8

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh----------------------HHHHHhCCCCC
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------------------KDLVKRGNISK  152 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~i~~  152 (189)
                      ..+++++|+||++||++|+.+.|.++++.+.   ++.++.|+.++..                      ..+++.|++.+
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~  137 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG  137 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence            3689999999999999999999999988763   4666666653211                      13678899999


Q ss_pred             CCeEEEE-eCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          153 MPTIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       153 ~Pt~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +|+.+++ ++|+++.++.|..+.    +++.++|+++
T Consensus       138 ~P~~~~id~~G~i~~~~~G~~~~----~~l~~~l~~~  170 (173)
T TIGR00385       138 APETFLVDGNGVILYRHAGPLNN----EVWTEGFLPA  170 (173)
T ss_pred             CCeEEEEcCCceEEEEEeccCCH----HHHHHHHHHH
Confidence            9987777 599999999999888    5555555544

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.54  E-value=7.6e-14  Score=93.12  Aligned_cols=68  Identities=29%  Similarity=0.701  Sum_probs=57.4

Q ss_pred             CCcEEEEEecCCChhhhhhhHHHHHHHHHhC--CCeEEEEEEccCCh------------------------HHHHHhCCC
Q 029703           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVS------------------------KDLVKRGNI  150 (189)
Q Consensus        97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~------------------------~~l~~~~~i  150 (189)
                      +|+++|+|||+||++|+...|.+.++.++++  +++.++.|+.+...                        ..+.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            5899999999999999999999999999997  68999999988642                        138899999


Q ss_pred             CCCCeEEEEe-CCeE
Q 029703          151 SKMPTIQIWK-DGEM  164 (189)
Q Consensus       151 ~~~Pt~~~~~-~G~~  164 (189)
                      .++|+++++. +|++
T Consensus        81 ~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   81 NGIPTLVLLDPDGKI   95 (95)
T ss_dssp             TSSSEEEEEETTSBE
T ss_pred             CcCCEEEEECCCCCC
Confidence            9999999996 7863

...

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.52  E-value=3.4e-13  Score=94.58  Aligned_cols=97  Identities=13%  Similarity=0.192  Sum_probs=80.7

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecC--CChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCChHHHHHhCCCCCCCeEEEE
Q 029703           83 SDHLDQILLRAQELSQPILIDWMAS--WCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW  159 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~--wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~  159 (189)
                      ..+++..+    ...+..+|+|-++  -++.+....-+|++++++|. .++.+++||++.++. ++.+|||.++||+++|
T Consensus        24 ~~~~~~~~----~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~-LA~~fgV~siPTLl~F   98 (132)
T PRK11509         24 ESRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA-IGDRFGVFRFPATLVF   98 (132)
T ss_pred             cccHHHHH----hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH-HHHHcCCccCCEEEEE
Confidence            46888888    5666777767543  45777778889999999996 359999999999996 9999999999999999


Q ss_pred             eCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          160 KDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       160 ~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      ++|+.+.++.|..+.    +++.++|+++
T Consensus        99 kdGk~v~~i~G~~~k----~~l~~~I~~~  123 (132)
T PRK11509         99 TGGNYRGVLNGIHPW----AELINLMRGL  123 (132)
T ss_pred             ECCEEEEEEeCcCCH----HHHHHHHHHH
Confidence            999999999999999    6666666554

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.51  E-value=2e-13  Score=95.87  Aligned_cols=77  Identities=21%  Similarity=0.341  Sum_probs=64.3

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEcc-----------------------CChHHHHHhCCCC
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-----------------------KVSKDLVKRGNIS  151 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~-----------------------~~~~~l~~~~~i~  151 (189)
                      ..+++++|+||++||++|+.+.|.++++.+++  ++.++.|+.+                       ... .+++.|++.
T Consensus        23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~v~   99 (127)
T cd03010          23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDG-RVGIDLGVY   99 (127)
T ss_pred             cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcc-hHHHhcCCC
Confidence            45889999999999999999999999998876  3777777642                       223 378889999


Q ss_pred             CCCeEEEE-eCCeEEEEEeCCCcc
Q 029703          152 KMPTIQIW-KDGEMKSEVIGGHKA  174 (189)
Q Consensus       152 ~~Pt~~~~-~~G~~~~~~~g~~~~  174 (189)
                      ++|+.+++ ++|+++.++.|..+.
T Consensus       100 ~~P~~~~ld~~G~v~~~~~G~~~~  123 (127)
T cd03010         100 GVPETFLIDGDGIIRYKHVGPLTP  123 (127)
T ss_pred             CCCeEEEECCCceEEEEEeccCCh
Confidence            99977777 599999999998876

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR02740 TraF-like TraF-like protein

Probab=99.51  E-value=3.8e-13  Score=106.17  Aligned_cols=85  Identities=14%  Similarity=0.185  Sum_probs=66.3

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh----------HHHHHhCCCCCCCeEEEEeC-Ce
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------KDLVKRGNISKMPTIQIWKD-GE  163 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------~~l~~~~~i~~~Pt~~~~~~-G~  163 (189)
                      -.++++||+||++||++|+.+.|.|++++++++  +.++.|+++...          ..++++|+|.++||+++++. |+
T Consensus       164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~  241 (271)
T TIGR02740       164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN  241 (271)
T ss_pred             hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence            458999999999999999999999999999984  666666665421          24899999999999999974 54


Q ss_pred             E-EEEEeCCCcchhhHHHH
Q 029703          164 M-KSEVIGGHKAWLVIEEV  181 (189)
Q Consensus       164 ~-~~~~~g~~~~~~~~~~l  181 (189)
                      . .....|..+.+.+.+.+
T Consensus       242 ~v~~v~~G~~s~~eL~~~i  260 (271)
T TIGR02740       242 QFTPIGFGVMSADELVDRI  260 (271)
T ss_pred             EEEEEEeCCCCHHHHHHHH
Confidence            4 44566888884333333

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.51  E-value=1.3e-13  Score=97.72  Aligned_cols=73  Identities=22%  Similarity=0.477  Sum_probs=60.3

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC---CeEEEEEEccCCh------------------------HHHHHh
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVS------------------------KDLVKR  147 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~vd~~~~~------------------------~~l~~~  147 (189)
                      -.+|+++|+||++||++|+.+.|.++++++++++   ++.++.|+++...                        ..+++.
T Consensus        15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   94 (132)
T cd02964          15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ   94 (132)
T ss_pred             hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence            4689999999999999999999999999998854   5778877776532                        236778


Q ss_pred             CCCCCCCeEEEEe-CCeEEEE
Q 029703          148 GNISKMPTIQIWK-DGEMKSE  167 (189)
Q Consensus       148 ~~i~~~Pt~~~~~-~G~~~~~  167 (189)
                      |+|.++|++++++ +|+++.+
T Consensus        95 ~~v~~iPt~~lid~~G~iv~~  115 (132)
T cd02964          95 FKVEGIPTLVVLKPDGDVVTT  115 (132)
T ss_pred             cCCCCCCEEEEECCCCCEEch
Confidence            9999999999996 8887643

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.49  E-value=1.8e-13  Score=96.73  Aligned_cols=72  Identities=22%  Similarity=0.483  Sum_probs=60.0

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCCh-----------------------HHHHHhCC
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVS-----------------------KDLVKRGN  149 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~-----------------------~~l~~~~~  149 (189)
                      .++++||+||++||++|+.+.|.+.++.+++.   +++.++.++.+...                       ..+++.|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            57899999999999999999999999988874   25777777776432                       24788999


Q ss_pred             CCCCCeEEEEe-CCeEEEE
Q 029703          150 ISKMPTIQIWK-DGEMKSE  167 (189)
Q Consensus       150 i~~~Pt~~~~~-~G~~~~~  167 (189)
                      |.++|++++++ +|+++.+
T Consensus        97 v~~~P~~~lid~~G~i~~~  115 (131)
T cd03009          97 IEGIPTLIILDADGEVVTT  115 (131)
T ss_pred             CCCCCEEEEECCCCCEEcc
Confidence            99999999996 9987654

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.49  E-value=4.4e-13  Score=98.92  Aligned_cols=88  Identities=17%  Similarity=0.492  Sum_probs=75.0

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCCh---------------------HHHHHhCCCCCC
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS---------------------KDLVKRGNISKM  153 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~---------------------~~l~~~~~i~~~  153 (189)
                      .+++++|+||++||++|+...+.+.++.+++.+ ++.++.++++...                     ..+++.|++..+
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  139 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence            578999999999999999999999999999854 4888888876432                     247899999999


Q ss_pred             CeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          154 PTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       154 Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      |+++++. +|+++..+.|..+.    +++.+++++
T Consensus       140 P~~~lid~~g~i~~~~~g~~~~----~~l~~~l~~  170 (173)
T PRK03147        140 PTTFLIDKDGKVVKVITGEMTE----EQLEEYLEK  170 (173)
T ss_pred             CeEEEECCCCcEEEEEeCCCCH----HHHHHHHHH
Confidence            9999996 99999999999988    777777764

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.47  E-value=4.6e-13  Score=83.66  Aligned_cols=62  Identities=16%  Similarity=0.289  Sum_probs=54.2

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEE
Q 029703          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      -++.|+++||++|+.+.+.++++++.. +++.+..+|+++.++ ++++|++.++||+++  +|+.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~-l~~~~~i~~vPti~i--~~~~~   63 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPD-LADEYGVMSVPAIVI--NGKVE   63 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHh-HHHHcCCcccCEEEE--CCEEE
Confidence            367899999999999999999998765 689999999998875 999999999999865  67643

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.46  E-value=4.7e-13  Score=122.62  Aligned_cols=89  Identities=16%  Similarity=0.374  Sum_probs=72.0

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCC-eEEEEEEc---cC-----------------------ChHHHHHhC
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK-LKFYYVDV---NK-----------------------VSKDLVKRG  148 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~-v~~~~vd~---~~-----------------------~~~~l~~~~  148 (189)
                      .+|++||+|||+||++|+...|.|+++.++++++ +.++.|..   +.                       ....+.++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            6899999999999999999999999999999643 77777742   11                       011377899


Q ss_pred             CCCCCCeEEEE-eCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          149 NISKMPTIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       149 ~i~~~Pt~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +|.++|+++++ ++|+++.++.|....    +.|.++|++.
T Consensus       499 ~V~~iPt~ilid~~G~iv~~~~G~~~~----~~l~~~l~~~  535 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGKLIAQLSGEGHR----KDLDDLVEAA  535 (1057)
T ss_pred             CCCccceEEEECCCCeEEEEEecccCH----HHHHHHHHHH
Confidence            99999999999 599999999998887    5666655543

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.44  E-value=5.7e-13  Score=93.34  Aligned_cols=88  Identities=13%  Similarity=0.228  Sum_probs=64.0

Q ss_pred             hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~  160 (189)
                      .+|++.+..|+.++|+++|+|+++||++|+.|....   .++.+..+.++.++.++.+...... ...+ ..+||++|+.
T Consensus        10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~-~~~g-~~vPtivFld   87 (130)
T cd02960          10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNL-SPDG-QYVPRIMFVD   87 (130)
T ss_pred             hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCc-CccC-cccCeEEEEC
Confidence            478888888889999999999999999999998654   3344444345666667665321111 1234 6899999996


Q ss_pred             -CCeEEEEEeCCCc
Q 029703          161 -DGEMKSEVIGGHK  173 (189)
Q Consensus       161 -~G~~~~~~~g~~~  173 (189)
                       +|+++.++.|..+
T Consensus        88 ~~g~vi~~i~Gy~~  101 (130)
T cd02960          88 PSLTVRADITGRYS  101 (130)
T ss_pred             CCCCCccccccccc
Confidence             9999988888754

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>smart00594 UAS UAS domain

Probab=99.43  E-value=3.1e-12  Score=89.47  Aligned_cols=99  Identities=14%  Similarity=0.182  Sum_probs=76.7

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEccCCh-HHHHHhCCCCCCCeEEE
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPTIQI  158 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~~  158 (189)
                      ..+|++++..|++++|+++|+|+++||++|+.+....   .++.+.++.++.+..+|++... ..++..|++.++|++++
T Consensus        13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~   92 (122)
T smart00594       13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI   92 (122)
T ss_pred             eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence            3478888877778899999999999999999987533   3344445456888888877543 25899999999999999


Q ss_pred             Ee-CC-----eEEEEEeCCCcchhhHHHHHHHH
Q 029703          159 WK-DG-----EMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       159 ~~-~G-----~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      +. +|     +.+.++.|..+.    ++|..+|
T Consensus        93 l~~~~g~~~~~~~~~~~G~~~~----~~l~~~l  121 (122)
T smart00594       93 VDPRTGQRVIEWVGVVEGEISP----EELMTFL  121 (122)
T ss_pred             EecCCCceeEEEeccccCCCCH----HHHHHhh
Confidence            95 55     357789999888    6666554

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.42  E-value=2.2e-12  Score=89.92  Aligned_cols=77  Identities=22%  Similarity=0.412  Sum_probs=60.3

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEc---------------------cCChHHHHHhCCCCCC
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV---------------------NKVSKDLVKRGNISKM  153 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~---------------------~~~~~~l~~~~~i~~~  153 (189)
                      ..+++++|+||++||++|+.+.|.+.++++++  .+..+.+|-                     +... .++++|+|.++
T Consensus        18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~   94 (123)
T cd03011          18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDG-VISARWGVSVT   94 (123)
T ss_pred             hCCCEEEEEEECCcChhhhhhChHHHHHHhhC--CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCc-HHHHhCCCCcc
Confidence            35699999999999999999999999998874  222222221                     1222 48999999999


Q ss_pred             CeEEEEeCCeEEEEEeCCCcc
Q 029703          154 PTIQIWKDGEMKSEVIGGHKA  174 (189)
Q Consensus       154 Pt~~~~~~G~~~~~~~g~~~~  174 (189)
                      |+++++.+|.+..++.|..+.
T Consensus        95 P~~~vid~~gi~~~~~g~~~~  115 (123)
T cd03011          95 PAIVIVDPGGIVFVTTGVTSE  115 (123)
T ss_pred             cEEEEEcCCCeEEEEeccCCH
Confidence            999999744488899999888

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.41  E-value=2.7e-12  Score=94.85  Aligned_cols=83  Identities=13%  Similarity=0.218  Sum_probs=64.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC------------hHHHHHhCCC--CCCCeEEEEe-CCeEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV------------SKDLVKRGNI--SKMPTIQIWK-DGEMK  165 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~------------~~~l~~~~~i--~~~Pt~~~~~-~G~~~  165 (189)
                      +|+||++||++|+++.|.+++++++++  +.++.|+.+..            ...+...|++  .++|+.++++ +|+++
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~  150 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA  150 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence            778999999999999999999999983  66666666532            1236778995  6999999995 99886


Q ss_pred             -EEEeCCCcchhhHHHHHHHH
Q 029703          166 -SEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       166 -~~~~g~~~~~~~~~~l~~~i  185 (189)
                       ..+.|..+.+.+.+.+...+
T Consensus       151 ~~~~~G~~~~~~L~~~I~~ll  171 (181)
T PRK13728        151 LPLLQGATDAAGFMARMDTVL  171 (181)
T ss_pred             EEEEECCCCHHHHHHHHHHHH
Confidence             57999999854444444444

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.41  E-value=2.4e-12  Score=87.59  Aligned_cols=74  Identities=28%  Similarity=0.571  Sum_probs=66.1

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC-----------------------hHHHHHhCCCC
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV-----------------------SKDLVKRGNIS  151 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~-----------------------~~~l~~~~~i~  151 (189)
                      .+++++|+||++||++|+...+.+.++.++++ +++.++.|+++..                       . .+.+.|++.
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   96 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG-ELAKAYGVR   96 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcc-hHHHhcCcC
Confidence            47899999999999999999999999999985 5799999999875                       3 489999999


Q ss_pred             CCCeEEEEe-CCeEEEEEeC
Q 029703          152 KMPTIQIWK-DGEMKSEVIG  170 (189)
Q Consensus       152 ~~Pt~~~~~-~G~~~~~~~g  170 (189)
                      ++|+++++. +|+++.++.|
T Consensus        97 ~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          97 GLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             ccceEEEECCCCcEEEEecC
Confidence            999999996 8999888766

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.41  E-value=2.1e-12  Score=88.83  Aligned_cols=70  Identities=19%  Similarity=0.304  Sum_probs=55.5

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh--------------------HHHHHhCCCCCCCe
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--------------------KDLVKRGNISKMPT  155 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~--------------------~~l~~~~~i~~~Pt  155 (189)
                      ++++++|+||++||++|+.+.|.++++.+++.+++.++.+. +...                    ..+.++|++..+|+
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~   98 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPY   98 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCe
Confidence            37899999999999999999999999988886667666552 2111                    23677889999999


Q ss_pred             EEEEe-CCeEEE
Q 029703          156 IQIWK-DGEMKS  166 (189)
Q Consensus       156 ~~~~~-~G~~~~  166 (189)
                      .++++ +|+++.
T Consensus        99 ~~vid~~G~v~~  110 (114)
T cd02967          99 AVLLDEAGVIAA  110 (114)
T ss_pred             EEEECCCCeEEe
Confidence            99996 887754

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.40  E-value=3.3e-12  Score=84.36  Aligned_cols=73  Identities=16%  Similarity=0.243  Sum_probs=62.6

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA  174 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~  174 (189)
                      .+..-+..|+++||++|....+.++++++.+ +++.+..+|.++.++ ++++|+|.++||+++  ||+.+.  .|..+.
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~e-~a~~~~V~~vPt~vi--dG~~~~--~G~~~~   83 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQD-EVEERGIMSVPAIFL--NGELFG--FGRMTL   83 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCHH-HHHHcCCccCCEEEE--CCEEEE--eCCCCH
Confidence            4566788899999999999999999999887 689999999999885 899999999999964  898765  475443

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.36  E-value=6.2e-12  Score=88.30  Aligned_cols=76  Identities=16%  Similarity=0.258  Sum_probs=63.4

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccC-----Ch---------------------HHHHHhC
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK-----VS---------------------KDLVKRG  148 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~-----~~---------------------~~l~~~~  148 (189)
                      .+++++|+||++||++|+...|.|.++.++++ .++.++.|+.+.     ..                     ..+.+.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            57999999999999999999999999999996 357888876521     11                     1367889


Q ss_pred             CCCCCCeEEEEe-CCeEEEEEeCC
Q 029703          149 NISKMPTIQIWK-DGEMKSEVIGG  171 (189)
Q Consensus       149 ~i~~~Pt~~~~~-~G~~~~~~~g~  171 (189)
                      ++.++|+++++. +|+++.++.|.
T Consensus       102 ~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         102 GNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             CCCcCCeEEEECCCCcEEEEEecC
Confidence            999999999995 89999998885

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.36  E-value=2.1e-12  Score=84.01  Aligned_cols=75  Identities=20%  Similarity=0.446  Sum_probs=58.1

Q ss_pred             hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~  160 (189)
                      .++++.+..|++++|+++|+|+++||++|+.|...+   .++.+.+..++.++.+|.+......  .+...++|+++++.
T Consensus         4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~~~~P~~~~ld   81 (82)
T PF13899_consen    4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDRQGYPTFFFLD   81 (82)
T ss_dssp             SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHHCSSSEEEEEE
T ss_pred             hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCCccCCEEEEeC
Confidence            367778877778999999999999999999998766   4455545568999999998765422  22226699999985

...

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.35  E-value=1.6e-11  Score=88.16  Aligned_cols=78  Identities=22%  Similarity=0.451  Sum_probs=67.0

Q ss_pred             CCCcEEEEEecC-CChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------HHHHHhCCCC--
Q 029703           96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------KDLVKRGNIS--  151 (189)
Q Consensus        96 ~~k~~vv~f~a~-wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~--  151 (189)
                      .+|+++|.||++ ||++|+...|.+.++.++++ ..+.++.|..+..+                    ..+.++|++.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            689999999999 99999999999999998864 45888888776543                    1388999998  


Q ss_pred             -------CCCeEEEEe-CCeEEEEEeCCCc
Q 029703          152 -------KMPTIQIWK-DGEMKSEVIGGHK  173 (189)
Q Consensus       152 -------~~Pt~~~~~-~G~~~~~~~g~~~  173 (189)
                             ++|+++++. +|+++.+..|...
T Consensus       107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence                   999999885 9999999999877

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.34  E-value=1.6e-11  Score=91.26  Aligned_cols=90  Identities=8%  Similarity=0.055  Sum_probs=68.1

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEE------EEEEccCCh---------------------------
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKF------YYVDVNKVS---------------------------  141 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~------~~vd~~~~~---------------------------  141 (189)
                      -.+|+.+|+|||+||++|+...|.+.++.++   ++.+      ..||.++..                           
T Consensus        57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~  133 (184)
T TIGR01626        57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD  133 (184)
T ss_pred             cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence            4699999999999999999999999999664   2444      555555421                           


Q ss_pred             -HHHHHhCCCCCCCeE-EEEe-CCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          142 -KDLVKRGNISKMPTI-QIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       142 -~~l~~~~~i~~~Pt~-~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                       ..++..|++.++|+. ++++ +|+++.++.|..+.+.+.+ +...|++.
T Consensus       134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~-~~~li~~l  182 (184)
T TIGR01626       134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT-VISLVNGL  182 (184)
T ss_pred             cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH-HHHHHHHH
Confidence             126778999999877 6774 9999999999988754433 55555554

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.32  E-value=8.3e-12  Score=105.44  Aligned_cols=103  Identities=22%  Similarity=0.398  Sum_probs=81.9

Q ss_pred             eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHH---HHHHHhCCCeEEEEEEccCChH---HHHHhCCCC
Q 029703           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS  151 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~---~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~  151 (189)
                      ..+.+...+++.+.+  ..+|||+|+|||+||-.||.+++..-   +...+. .++...++|.+.++.   ++.++|++-
T Consensus       457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~~~~  533 (569)
T COG4232         457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKRLGVF  533 (569)
T ss_pred             hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHHcCCC
Confidence            556667789999854  34469999999999999999987653   333344 679999999998743   488999999


Q ss_pred             CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          152 KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       152 ~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      ++|++++|. +|++.....|..++    +.+.+++++
T Consensus       534 G~P~~~ff~~~g~e~~~l~gf~~a----~~~~~~l~~  566 (569)
T COG4232         534 GVPTYLFFGPQGSEPEILTGFLTA----DAFLEHLER  566 (569)
T ss_pred             CCCEEEEECCCCCcCcCCcceecH----HHHHHHHHH
Confidence            999999997 88887789999999    666666654

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=1.4e-12  Score=109.20  Aligned_cols=103  Identities=18%  Similarity=0.353  Sum_probs=77.1

Q ss_pred             cCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHh---CCCeEEEEEEccCCh-HHHHHhCCCCCCCe
Q 029703           80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKVS-KDLVKRGNISKMPT  155 (189)
Q Consensus        80 i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~---~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt  155 (189)
                      ..+.++|+..+.   .+.+..+|.||++|||+|+.+.|.++++++.+   .+-+.++.|||.+.. ..+|++|+|+++|+
T Consensus        43 ~Ld~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Pt  119 (606)
T KOG1731|consen   43 ELDVDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPT  119 (606)
T ss_pred             EeehhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCce
Confidence            345789999995   33469999999999999999999999999987   346889999997653 35999999999999


Q ss_pred             EEEEeCC----eEEEEEeCCCcchhhHHHHHHHH
Q 029703          156 IQIWKDG----EMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       156 ~~~~~~G----~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      +.+|..+    ..=..+.|.....+..+.+...|
T Consensus       120 lryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l  153 (606)
T KOG1731|consen  120 LRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL  153 (606)
T ss_pred             eeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence            9999522    11123455555544445554444

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.26  E-value=5.2e-11  Score=91.97  Aligned_cols=89  Identities=16%  Similarity=0.133  Sum_probs=66.7

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC-------ChH---HHH-HhCC--------------
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK-------VSK---DLV-KRGN--------------  149 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~-------~~~---~l~-~~~~--------------  149 (189)
                      .++++||+||++||++|+...|.|.++.+++++ .+.++.|+++.       ..+   ..+ ++++              
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            579999999999999999999999999999964 58898888742       111   122 2221              


Q ss_pred             --------------------CCCCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          150 --------------------ISKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       150 --------------------i~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                                          |...|+.+++. +|+++.++.|..+.    ++|+..|+++
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~----~~le~~I~~l  233 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSP----FQIEKDIQKL  233 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCH----HHHHHHHHHH
Confidence                                12358888885 99999999999988    5555555554

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.26  E-value=1.8e-11  Score=87.60  Aligned_cols=71  Identities=20%  Similarity=0.487  Sum_probs=61.1

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCC---eEEEEEEccCCh------------------------HHHHHhC
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK---LKFYYVDVNKVS------------------------KDLVKRG  148 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~vd~~~~~------------------------~~l~~~~  148 (189)
                      .+|.+.++|.|.||+||+.+.|++.++.++.+.+   +.++.|+.|...                        +++...|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            6799999999999999999999999999998655   888888877643                        2378899


Q ss_pred             CCCCCCeEEEEe-CCeEEE
Q 029703          149 NISKMPTIQIWK-DGEMKS  166 (189)
Q Consensus       149 ~i~~~Pt~~~~~-~G~~~~  166 (189)
                      +|.++|++++++ +|..+.
T Consensus       112 ~v~~iP~l~i~~~dG~~v~  130 (157)
T KOG2501|consen  112 EVKGIPALVILKPDGTVVT  130 (157)
T ss_pred             ccCcCceeEEecCCCCEeh
Confidence            999999999996 897764

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.25  E-value=7.2e-11  Score=88.66  Aligned_cols=71  Identities=21%  Similarity=0.368  Sum_probs=54.4

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC-------------------ChHHHHHhCCCCCCCe
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-------------------VSKDLVKRGNISKMPT  155 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~-------------------~~~~l~~~~~i~~~Pt  155 (189)
                      ..+++++|+||++||++|+.+.|.+.++.++..-++  +.+..+.                   ...++++.|++..+|+
T Consensus        72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~v--v~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~  149 (189)
T TIGR02661        72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDV--VMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY  149 (189)
T ss_pred             cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcE--EEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence            367899999999999999999999999987753334  4333211                   0124788999999999


Q ss_pred             EEEEe-CCeEEEE
Q 029703          156 IQIWK-DGEMKSE  167 (189)
Q Consensus       156 ~~~~~-~G~~~~~  167 (189)
                      .+++. +|++..+
T Consensus       150 ~~lID~~G~I~~~  162 (189)
T TIGR02661       150 GVLLDQDGKIRAK  162 (189)
T ss_pred             EEEECCCCeEEEc
Confidence            88885 8988764

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=99.23  E-value=6.2e-11  Score=93.03  Aligned_cols=111  Identities=15%  Similarity=0.288  Sum_probs=84.3

Q ss_pred             ccceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCC
Q 029703           74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKM  153 (189)
Q Consensus        74 ~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~  153 (189)
                      -..+.++.+.+.|-+.+..+ ..+..|||.||.+.++.|..|...|..||.+| +.++|++|.....+  +..+|.+..+
T Consensus       124 fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-p~vKFvkI~a~~~~--~~~~f~~~~L  199 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-PEVKFVKIRASKCP--ASENFPDKNL  199 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--TTSEEEEEEECGCC--TTTTS-TTC-
T ss_pred             CceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEEehhccC--cccCCcccCC
Confidence            34577788888888888322 23457999999999999999999999999999 89999999998765  5789999999


Q ss_pred             CeEEEEeCCeEEEEEeCCC---cchhhHHHHHHHHHhh
Q 029703          154 PTIQIWKDGEMKSEVIGGH---KAWLVIEEVREMIKKF  188 (189)
Q Consensus       154 Pt~~~~~~G~~~~~~~g~~---~~~~~~~~l~~~i~~~  188 (189)
                      ||+++|++|..+..+.|..   ..++..+.|+.+|.++
T Consensus       200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            9999999999999998864   3456777888888764

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PLN02412 probable glutathione peroxidase

Probab=99.20  E-value=1.2e-10  Score=85.87  Aligned_cols=91  Identities=14%  Similarity=0.152  Sum_probs=66.9

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC-------ChHHH----HHhCC--------------
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK-------VSKDL----VKRGN--------------  149 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~-------~~~~l----~~~~~--------------  149 (189)
                      .+|++||+||++||++|+...|.|.++.+++++ ++.++.|+++.       ...++    +++++              
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~  107 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK  107 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence            579999999999999999999999999999964 58888888642       11111    12211              


Q ss_pred             --------------------CCCCCeEEEE-eCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          150 --------------------ISKMPTIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       150 --------------------i~~~Pt~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                                          |...|+.+++ ++|+++.++.|..+...+...|...|+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                3446888888 499999999999998444444444443

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.19  E-value=2.4e-10  Score=86.51  Aligned_cols=91  Identities=13%  Similarity=0.182  Sum_probs=65.2

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC-------ChH---HHHHhCCC--------------
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK-------VSK---DLVKRGNI--------------  150 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~-------~~~---~l~~~~~i--------------  150 (189)
                      .++++||+|||+||++|+...|.|.++.+++++ .+.++.|+++.       ..+   ..++++++              
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~  117 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN  117 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence            578999999999999999999999999999954 58899998642       111   23444432              


Q ss_pred             ----------------------CCCC---eEEEE-eCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          151 ----------------------SKMP---TIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       151 ----------------------~~~P---t~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                                            ..+|   +.+++ ++|+++.++.|..+...+.+.|...++
T Consensus       118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~  179 (199)
T PTZ00056        118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG  179 (199)
T ss_pred             cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                  1222   45566 599999999998887444455554443

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=99.18  E-value=7.6e-10  Score=76.58  Aligned_cols=100  Identities=13%  Similarity=0.107  Sum_probs=80.1

Q ss_pred             HHHHHHHHhhcCCCcEEEEEecC----CChhhhhhh--HHHHHHHHHhCCCeEEEEEEccCCh-HHHHHhCCCCCCCeEE
Q 029703           85 HLDQILLRAQELSQPILIDWMAS----WCRKCIYLK--PKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPTIQ  157 (189)
Q Consensus        85 ~~~~~~~~a~~~~k~~vv~f~a~----wC~~C~~~~--~~l~~~~~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~  157 (189)
                      .|++++..|+++.|.++|++|++    ||..|+...  |.+.++.+   .++.+...|++... ..++..+++.++|++.
T Consensus         5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~   81 (116)
T cd02991           5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---TRMLFWACSVAKPEGYRVSQALRERTYPFLA   81 (116)
T ss_pred             cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---cCEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence            57788877878999999999999    899997654  55555544   56888889987653 2589999999999999


Q ss_pred             EE---e-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          158 IW---K-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       158 ~~---~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      ++   . +.+++.++.|..+++.+...|..++++
T Consensus        82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~  115 (116)
T cd02991          82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA  115 (116)
T ss_pred             EEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence            99   2 345688999999997777777777765

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.12  E-value=3.7e-10  Score=76.43  Aligned_cols=73  Identities=30%  Similarity=0.660  Sum_probs=64.0

Q ss_pred             CCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEcc-CChHHHHHhCC--CCCCCeEEEEeCCeEEEEEeC
Q 029703           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGN--ISKMPTIQIWKDGEMKSEVIG  170 (189)
Q Consensus        97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~-~~~~~l~~~~~--i~~~Pt~~~~~~G~~~~~~~g  170 (189)
                      ++++++.||++||++|+.+.|.+.++++++...+.+..+|.. .... +...|+  +..+|+++++.+|+.+....+
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  107 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD-LAAEFGVAVRSIPTLLLFKDGKEVDRLVG  107 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH-HHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence            789999999999999999999999999999657999999997 5554 899999  999999999888877655655

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.12  E-value=8.5e-10  Score=80.01  Aligned_cols=90  Identities=21%  Similarity=0.203  Sum_probs=66.1

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC-------ChH---HHHHh-CC--------------
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK-------VSK---DLVKR-GN--------------  149 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~-------~~~---~l~~~-~~--------------  149 (189)
                      .+|++||.||++||++|+...|.+.++.+++++ ++.++.|+++.       ..+   ..+++ ++              
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~  100 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS  100 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence            578999999999999999999999999999954 68898888621       111   12221 21              


Q ss_pred             ---------C---CCCCe----EEEE-eCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703          150 ---------I---SKMPT----IQIW-KDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       150 ---------i---~~~Pt----~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                               +   .++|+    .+++ ++|+++.++.|..+.    +.|...|++.|
T Consensus       101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~----~~l~~~i~~l~  153 (153)
T TIGR02540       101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPV----EEIRPEITALV  153 (153)
T ss_pred             CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCH----HHHHHHHHHhC
Confidence                     1   24785    5666 599999999999988    66666666543

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.11  E-value=1.2e-09  Score=80.70  Aligned_cols=72  Identities=14%  Similarity=0.365  Sum_probs=60.9

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC-------h---------------------HHHHH
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV-------S---------------------KDLVK  146 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~-------~---------------------~~l~~  146 (189)
                      .++++||+||++||+.|....+.+.++.+++. .++.++.|..+..       .                     ..+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            67999999999999999999999999999985 4789999887642       1                     12678


Q ss_pred             hCCCCCCCeEEEEe-CCeEEEE
Q 029703          147 RGNISKMPTIQIWK-DGEMKSE  167 (189)
Q Consensus       147 ~~~i~~~Pt~~~~~-~G~~~~~  167 (189)
                      .|++...|+++++. +|+++.+
T Consensus       104 ~~~v~~~P~~~lid~~G~v~~~  125 (171)
T cd02969         104 AYGAACTPDFFLFDPDGKLVYR  125 (171)
T ss_pred             HcCCCcCCcEEEECCCCeEEEe
Confidence            89999999999996 8988755

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.4e-10  Score=86.54  Aligned_cols=91  Identities=24%  Similarity=0.452  Sum_probs=76.0

Q ss_pred             eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCChHHHHHhCCCC----
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNIS----  151 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~~~l~~~~~i~----  151 (189)
                      +...++.+.++..+..  +..+.|+|.|++.|.+.|+.+.|.+.++..+|. +..+|++||+...++ .+.+|+|.    
T Consensus       126 ikyf~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd-~a~kfris~s~~  202 (265)
T KOG0914|consen  126 IKYFTNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPD-VAAKFRISLSPG  202 (265)
T ss_pred             eeeecchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcC-hHHheeeccCcc
Confidence            3344556666666643  556799999999999999999999999999995 579999999999996 89999875    


Q ss_pred             --CCCeEEEEeCCeEEEEEeC
Q 029703          152 --KMPTIQIWKDGEMKSEVIG  170 (189)
Q Consensus       152 --~~Pt~~~~~~G~~~~~~~g  170 (189)
                        ..||+++|++|+++.|..-
T Consensus       203 srQLPT~ilFq~gkE~~RrP~  223 (265)
T KOG0914|consen  203 SRQLPTYILFQKGKEVSRRPD  223 (265)
T ss_pred             cccCCeEEEEccchhhhcCcc
Confidence              7999999999998876543

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.07  E-value=1.1e-09  Score=79.44  Aligned_cols=78  Identities=19%  Similarity=0.198  Sum_probs=59.1

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccC-------ChH---HHHHh-CC--------------
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK-------VSK---DLVKR-GN--------------  149 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~-------~~~---~l~~~-~~--------------  149 (189)
                      .+|+++|+||++||+ |+...|.|+++.++++ .++.++.|+++.       ..+   ..+++ ++              
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~   99 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE   99 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence            579999999999999 9999999999999995 468888887642       111   12322 22              


Q ss_pred             ---------CCCCC-----------eEEEE-eCCeEEEEEeCCCcc
Q 029703          150 ---------ISKMP-----------TIQIW-KDGEMKSEVIGGHKA  174 (189)
Q Consensus       150 ---------i~~~P-----------t~~~~-~~G~~~~~~~g~~~~  174 (189)
                               +.++|           |.+++ ++|+++.++.|..+.
T Consensus       100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~  145 (152)
T cd00340         100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDP  145 (152)
T ss_pred             CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCH
Confidence                     23466           56777 599999999999887

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.02  E-value=2.6e-09  Score=67.18  Aligned_cols=70  Identities=23%  Similarity=0.434  Sum_probs=53.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhh
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLV  177 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~  177 (189)
                      +..|+++||++|+.+.+.|.+      .++.+..+|++..+.   ++.+.+++.++|++++.  |+.   +.|. +.   
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~-~~---   66 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF-DP---   66 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-CH---
Confidence            567999999999999887764      357888899987653   35677999999999874  654   5664 44   


Q ss_pred             HHHHHHHHH
Q 029703          178 IEEVREMIK  186 (189)
Q Consensus       178 ~~~l~~~i~  186 (189)
                       +.|.++|+
T Consensus        67 -~~i~~~i~   74 (74)
T TIGR02196        67 -EKLDQLLE   74 (74)
T ss_pred             -HHHHHHhC
Confidence             77877764

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.00  E-value=4.9e-09  Score=74.51  Aligned_cols=79  Identities=14%  Similarity=0.106  Sum_probs=65.3

Q ss_pred             CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------HHHHHhCCCCCC
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------KDLVKRGNISKM  153 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~~~  153 (189)
                      .+++++|+|| +.||+.|....+.+.++.+++. .++.++.|..+...                    ..+++.|++...
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  101 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE  101 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence            4789999999 6899999999999999998884 46788877765422                    137888999988


Q ss_pred             ---------CeEEEEe-CCeEEEEEeCCCcc
Q 029703          154 ---------PTIQIWK-DGEMKSEVIGGHKA  174 (189)
Q Consensus       154 ---------Pt~~~~~-~G~~~~~~~g~~~~  174 (189)
                               |+.+++. +|+++..+.|....
T Consensus       102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~  132 (140)
T cd03017         102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPK  132 (140)
T ss_pred             cccccCCcceeEEEECCCCEEEEEEecCCcc
Confidence                     8999996 89999999999876

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.99  E-value=5e-09  Score=77.73  Aligned_cols=144  Identities=17%  Similarity=0.312  Sum_probs=103.2

Q ss_pred             cCCccccCCCccccceec--CceEEEeCC-CccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCCCc-
Q 029703           24 FQQPWSSGSSSCLLLQKN--SAFFWVDTA-SRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQP-   99 (189)
Q Consensus        24 ~~~~~~i~g~Ptl~~~~~--~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~-   99 (189)
                      .|..+++.. |+|.++++  +....|.|. ...+.      +........-|..   ..++ .+++..+.    ..+++ 
T Consensus        33 ~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~------l~~fI~~~~~P~v---~~~t-~~n~~~~~----~~~~~~   97 (184)
T PF13848_consen   33 LAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEE------LKKFIKKNSFPLV---PELT-PENFEKLF----SSPKPP   97 (184)
T ss_dssp             HHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHH------HHHHHHHHSSTSC---EEES-TTHHHHHH----STSSEE
T ss_pred             HHHHhCCCC-CcEEEeccCCCCceecccccCCHHH------HHHHHHHhccccc---cccc-hhhHHHHh----cCCCce
Confidence            345688888 99999998  345788776 22222      2222222233433   2233 66899988    66665 


Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCC--CCCeEEEEe--CCeEEEEEeCCCcch
Q 029703          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--KMPTIQIWK--DGEMKSEVIGGHKAW  175 (189)
Q Consensus       100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~--~~Pt~~~~~--~G~~~~~~~g~~~~~  175 (189)
                      +++.|..........+...+..+++++++++.|+.+|++..++ +++.+++.  .+|+++++.  +++......|..+. 
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~-~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~-  175 (184)
T PF13848_consen   98 VLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPR-LLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITP-  175 (184)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHH-HHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCH-
T ss_pred             EEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHH-HHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCH-
Confidence            7777877777788888999999999998899999999998775 89999998  999999997  44433333566666 


Q ss_pred             hhHHHHHHHHHh
Q 029703          176 LVIEEVREMIKK  187 (189)
Q Consensus       176 ~~~~~l~~~i~~  187 (189)
                         +.|.+|+++
T Consensus       176 ---~~i~~Fl~d  184 (184)
T PF13848_consen  176 ---ESIEKFLND  184 (184)
T ss_dssp             ---HHHHHHHHH
T ss_pred             ---HHHHHHhcC
Confidence               999999874

...

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.99  E-value=1.8e-09  Score=79.33  Aligned_cols=95  Identities=22%  Similarity=0.340  Sum_probs=85.6

Q ss_pred             CccceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCC
Q 029703           73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISK  152 (189)
Q Consensus        73 ~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~  152 (189)
                      ...++..+.+..+|=+..    ..+.-||+.||-+.-..|+.|...|+.+++.+ -...|++||+...| -++.+++|..
T Consensus        64 GhG~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h-~eTrFikvnae~~P-Flv~kL~IkV  137 (211)
T KOG1672|consen   64 GHGEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH-VETRFIKVNAEKAP-FLVTKLNIKV  137 (211)
T ss_pred             CCceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhc-ccceEEEEecccCc-eeeeeeeeeE
Confidence            345677888888887777    57888999999999999999999999999998 67899999999999 5999999999


Q ss_pred             CCeEEEEeCCeEEEEEeCCCc
Q 029703          153 MPTIQIWKDGEMKSEVIGGHK  173 (189)
Q Consensus       153 ~Pt~~~~~~G~~~~~~~g~~~  173 (189)
                      +|++++|++|..+.++.|+..
T Consensus       138 LP~v~l~k~g~~~D~iVGF~d  158 (211)
T KOG1672|consen  138 LPTVALFKNGKTVDYVVGFTD  158 (211)
T ss_pred             eeeEEEEEcCEEEEEEeeHhh
Confidence            999999999999999999754

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=7.5e-09  Score=73.58  Aligned_cols=80  Identities=18%  Similarity=0.357  Sum_probs=67.4

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEccCCh---------------HHHHHhCCCCCCCeE
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS---------------KDLVKRGNISKMPTI  156 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~---------------~~l~~~~~i~~~Pt~  156 (189)
                      .+++..+++|.++.|..|.++...+   .++.+.+.+++.++++++....               .+|++.|+|+++||+
T Consensus        40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf  119 (182)
T COG2143          40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF  119 (182)
T ss_pred             ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence            6789999999999999999987655   4455556677888888876532               359999999999999


Q ss_pred             EEEe-CCeEEEEEeCCCcc
Q 029703          157 QIWK-DGEMKSEVIGGHKA  174 (189)
Q Consensus       157 ~~~~-~G~~~~~~~g~~~~  174 (189)
                      ++|+ +|+.+..+.|..++
T Consensus       120 vFfdk~Gk~Il~lPGY~pp  138 (182)
T COG2143         120 VFFDKTGKTILELPGYMPP  138 (182)
T ss_pred             EEEcCCCCEEEecCCCCCH
Confidence            9996 89999999999988

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.97  E-value=5.6e-09  Score=78.01  Aligned_cols=88  Identities=11%  Similarity=0.152  Sum_probs=60.2

Q ss_pred             CCCcE-EEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC----C---hHH----HHHh---------------
Q 029703           96 LSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK----V---SKD----LVKR---------------  147 (189)
Q Consensus        96 ~~k~~-vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~----~---~~~----l~~~---------------  147 (189)
                      .+|++ ++.+||+||++|+...|.++++.+++++ ++.++.|+++.    .   ..+    +.++               
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g  118 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG  118 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence            46654 4566999999999999999999999954 58888887642    0   000    0111               


Q ss_pred             ---------------------CCCCCCCe---EEEE-eCCeEEEEEeCCCcchhhHHHHHH
Q 029703          148 ---------------------GNISKMPT---IQIW-KDGEMKSEVIGGHKAWLVIEEVRE  183 (189)
Q Consensus       148 ---------------------~~i~~~Pt---~~~~-~~G~~~~~~~g~~~~~~~~~~l~~  183 (189)
                                           +++.++|+   .+++ ++|+++.++.|..+...+.+.|.+
T Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~  179 (183)
T PTZ00256        119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEK  179 (183)
T ss_pred             CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHH
Confidence                                 13457794   3555 599999999998887433333333

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.92  E-value=2.1e-08  Score=74.22  Aligned_cols=92  Identities=9%  Similarity=0.091  Sum_probs=67.8

Q ss_pred             CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh---------------------------HHHHH
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------------KDLVK  146 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------------~~l~~  146 (189)
                      .++++||+|| +.||++|....+.|.++++++. .++.++.|..+...                           ..+++
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~  107 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR  107 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence            4689999999 8999999999999999999984 45777777654321                           13677


Q ss_pred             hCCCC------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          147 RGNIS------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       147 ~~~i~------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      .|++.      ..|+.++++ +|+++.++.+........+++.+.|++
T Consensus       108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~  155 (173)
T cd03015         108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA  155 (173)
T ss_pred             HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            88886      578999996 999999887654432233555555543

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.92  E-value=4.7e-09  Score=76.21  Aligned_cols=80  Identities=19%  Similarity=0.262  Sum_probs=53.0

Q ss_pred             HHHHHhhcCCCcEEEEEecCCChhhhhhhH-HH--HHHHHHhCCCeEEEEEEccCChHHHHHhC--------CCCCCCeE
Q 029703           88 QILLRAQELSQPILIDWMASWCRKCIYLKP-KL--EKLAAEFDTKLKFYYVDVNKVSKDLVKRG--------NISKMPTI  156 (189)
Q Consensus        88 ~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~-~l--~~~~~~~~~~v~~~~vd~~~~~~~l~~~~--------~i~~~Pt~  156 (189)
                      +.+..|++++|+++|.++.+||+.|+.|.. .+  .++++.++.++.-+++|.++.++ +...|        +..++|+.
T Consensus        28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd-id~~y~~~~~~~~~~gGwPl~  106 (163)
T PF03190_consen   28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD-IDKIYMNAVQAMSGSGGWPLT  106 (163)
T ss_dssp             HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH-HHHHHHHHHHHHHS---SSEE
T ss_pred             HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc-HHHHHHHHHHHhcCCCCCCce
Confidence            344444488999999999999999999874 22  44555565668889999999885 77777        78999999


Q ss_pred             EEEe-CCeEEEEE
Q 029703          157 QIWK-DGEMKSEV  168 (189)
Q Consensus       157 ~~~~-~G~~~~~~  168 (189)
                      +|+. +|+++...
T Consensus       107 vfltPdg~p~~~~  119 (163)
T PF03190_consen  107 VFLTPDGKPFFGG  119 (163)
T ss_dssp             EEE-TTS-EEEEE
T ss_pred             EEECCCCCeeeee
Confidence            9996 99987643

; PDB: 3IRA_A.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.89  E-value=1.1e-08  Score=61.45  Aligned_cols=61  Identities=33%  Similarity=0.572  Sum_probs=51.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHH--HhCCCCCCCeEEEEeCC
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV--KRGNISKMPTIQIWKDG  162 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~--~~~~i~~~Pt~~~~~~G  162 (189)
                      ++.||++||++|+.+.+.+.++ +....++.+..++++.......  ..+++..+|+++++..|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            4789999999999999999998 4445789999999998875222  48999999999999866

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.89  E-value=3.6e-10  Score=85.29  Aligned_cols=94  Identities=29%  Similarity=0.435  Sum_probs=80.1

Q ss_pred             CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHhCCCCCCCeEEEE
Q 029703           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW  159 (189)
Q Consensus        81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~  159 (189)
                      .+.+++..++      ..-+++.|+||||+.|+.+.|.|+.++.-- .-.+.+++||++.++. |.-+|-+...||+.-.
T Consensus        29 ~~eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-LsGRF~vtaLptIYHv  101 (248)
T KOG0913|consen   29 IDEENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-LSGRFLVTALPTIYHV  101 (248)
T ss_pred             ecccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-cceeeEEEecceEEEe
Confidence            3477888888      567999999999999999999999987753 2368999999999997 9999999999999998


Q ss_pred             eCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          160 KDGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       160 ~~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      ++|. ..||.|.++.    ..+..|+.
T Consensus       102 kDGe-FrrysgaRdk----~dfisf~~  123 (248)
T KOG0913|consen  102 KDGE-FRRYSGARDK----NDFISFEE  123 (248)
T ss_pred             eccc-cccccCcccc----hhHHHHHH
Confidence            9995 5899999998    55555553

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.89  E-value=8.1e-09  Score=71.36  Aligned_cols=81  Identities=20%  Similarity=0.520  Sum_probs=56.2

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEec-------CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh------HHHHH--
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS------KDLVK--  146 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a-------~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~------~~l~~--  146 (189)
                      +-++|.+.+.....++++++|+|++       +|||.|....|.+++.......+..++.+.+...+      .....  
T Consensus         4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p   83 (119)
T PF06110_consen    4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP   83 (119)
T ss_dssp             CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred             CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence            4567777775433567899999986       59999999999999988887668888888775422      12444  


Q ss_pred             hCCCCCCCeEEEEeCC
Q 029703          147 RGNISKMPTIQIWKDG  162 (189)
Q Consensus       147 ~~~i~~~Pt~~~~~~G  162 (189)
                      +++++++||++-+..+
T Consensus        84 ~~~l~~IPTLi~~~~~   99 (119)
T PF06110_consen   84 DLKLKGIPTLIRWETG   99 (119)
T ss_dssp             CC---SSSEEEECTSS
T ss_pred             eeeeeecceEEEECCC
Confidence            6999999999999765

; PDB: 1V9W_A 1WOU_A.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.88  E-value=3.8e-08  Score=62.93  Aligned_cols=73  Identities=21%  Similarity=0.461  Sum_probs=55.2

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeC-CCcchhhHHH
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIG-GHKAWLVIEE  180 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g-~~~~~~~~~~  180 (189)
                      |.+++++|+.|..+...+++++..+ + +.+-.+|....+ ++ .+|||.++|++++  ||+.  ++.| ..+.    ++
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~-~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~----~e   70 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFE-EI-EKYGVMSVPALVI--NGKV--VFVGRVPSK----EE   70 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHH-HH-HHTT-SSSSEEEE--TTEE--EEESS--HH----HH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHH-HH-HHcCCCCCCEEEE--CCEE--EEEecCCCH----HH
Confidence            3446888999999999999999998 3 777777775555 35 9999999999955  8975  5788 5666    78


Q ss_pred             HHHHHH
Q 029703          181 VREMIK  186 (189)
Q Consensus       181 l~~~i~  186 (189)
                      |.++|+
T Consensus        71 l~~~l~   76 (76)
T PF13192_consen   71 LKELLE   76 (76)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            888774

...

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.85  E-value=2.3e-08  Score=70.41  Aligned_cols=85  Identities=18%  Similarity=0.294  Sum_probs=52.4

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHh---CCCCCCCeEEEEe-CCeEEEEEeC
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR---GNISKMPTIQIWK-DGEMKSEVIG  170 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~---~~i~~~Pt~~~~~-~G~~~~~~~g  170 (189)
                      ..++.-++.|..+|||.|+..-|.+.++++.. +++.+-.+..+.+.+ +..+   .|..++|+++++. +|++++++..
T Consensus        39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~e-l~~~~lt~g~~~IP~~I~~d~~~~~lg~wge  116 (129)
T PF14595_consen   39 IQKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKE-LMDQYLTNGGRSIPTFIFLDKDGKELGRWGE  116 (129)
T ss_dssp             --S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHH-HTTTTTT-SS--SSEEEEE-TT--EEEEEES
T ss_pred             cCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChh-HHHHHHhCCCeecCEEEEEcCCCCEeEEEcC
Confidence            34566788899999999999999999999986 677777777777664 5554   4688999999995 7899888865


Q ss_pred             CCcchhhHHHHHHHHHh
Q 029703          171 GHKAWLVIEEVREMIKK  187 (189)
Q Consensus       171 ~~~~~~~~~~l~~~i~~  187 (189)
                      ..      +.+++++++
T Consensus       117 rP------~~~~~~~~~  127 (129)
T PF14595_consen  117 RP------KEVQELVDE  127 (129)
T ss_dssp             S-------HHHH-----
T ss_pred             CC------HHHhhcccc
Confidence            43      456665544

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.85  E-value=3.2e-08  Score=68.72  Aligned_cols=71  Identities=18%  Similarity=0.473  Sum_probs=60.2

Q ss_pred             CCCcEEEEEecC-CChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------HHHHHhCCCC--
Q 029703           96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------KDLVKRGNIS--  151 (189)
Q Consensus        96 ~~k~~vv~f~a~-wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~--  151 (189)
                      .+++++|.||+. ||++|+...+.+.++.++++ .++.++.|..+...                    ..+++.|++.  
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  103 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE  103 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence            479999999999 99999999999999999985 47899988886532                    1378899999  


Q ss_pred             ----CCCeEEEEe-CCeEEE
Q 029703          152 ----KMPTIQIWK-DGEMKS  166 (189)
Q Consensus       152 ----~~Pt~~~~~-~G~~~~  166 (189)
                          .+|+++++. +|+++.
T Consensus       104 ~~~~~~p~~~lid~~g~I~~  123 (124)
T PF00578_consen  104 KDTLALPAVFLIDPDGKIRY  123 (124)
T ss_dssp             TTSEESEEEEEEETTSBEEE
T ss_pred             cCCceEeEEEEECCCCEEEe
Confidence                999999996 887764

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.84  E-value=1.5e-08  Score=64.49  Aligned_cols=57  Identities=25%  Similarity=0.529  Sum_probs=42.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHh-----CCCCCCCeEEEEeCCeEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR-----GNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~-----~~i~~~Pt~~~~~~G~~~  165 (189)
                      ++.||++||++|+++.+.|.++      .+.+-.+|++..+. ....     +++.++|++ ++.+|+.+
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~-~~~~~~~~~~~~~~vP~i-~~~~g~~l   63 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEG-AADRVVSVNNGNMTVPTV-KFADGSFL   63 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHh-HHHHHHHHhCCCceeCEE-EECCCeEe
Confidence            5789999999999999988654      34456788877653 3444     489999997 56788654

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>TIGR03137 AhpC peroxiredoxin

Probab=98.84  E-value=5.9e-08  Score=72.73  Aligned_cols=91  Identities=14%  Similarity=0.083  Sum_probs=65.4

Q ss_pred             CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC------------------------hHHHHHhCC
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV------------------------SKDLVKRGN  149 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~------------------------~~~l~~~~~  149 (189)
                      .++++||+|| +.||++|....+.|.++.+++. .++.++.|..+..                        ...+++.|+
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g  109 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG  109 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence            5789999999 9999999999999999998884 4566777665531                        114788899


Q ss_pred             CC------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          150 IS------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       150 i~------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      +.      ..|+.+++. +|+++..+.+........+++.+.|+
T Consensus       110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~  153 (187)
T TIGR03137       110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK  153 (187)
T ss_pred             CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            86      469888885 99998876543322222355555443

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.84  E-value=5.6e-08  Score=71.55  Aligned_cols=75  Identities=9%  Similarity=0.088  Sum_probs=61.1

Q ss_pred             CCCcEEEEEecCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---------------------H-HHHHhCCCCC
Q 029703           96 LSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---------------------K-DLVKRGNISK  152 (189)
Q Consensus        96 ~~k~~vv~f~a~w-C~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---------------------~-~l~~~~~i~~  152 (189)
                      .+|+++|+||++| |++|....|.|.++++++ .++.++.|..+...                     . .+++.||+..
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~  121 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-DNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI  121 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-CCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence            4789999999999 999999999999999998 57888877766411                     1 4788999988


Q ss_pred             CC---------eEEEEe-CCeEEEEEeCC
Q 029703          153 MP---------TIQIWK-DGEMKSEVIGG  171 (189)
Q Consensus       153 ~P---------t~~~~~-~G~~~~~~~g~  171 (189)
                      .|         +.+++. +|+++..+.+.
T Consensus       122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~~  150 (167)
T PRK00522        122 AEGPLKGLLARAVFVLDENNKVVYSELVP  150 (167)
T ss_pred             cccccCCceeeEEEEECCCCeEEEEEECC
Confidence            77         888885 99998887543

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.82  E-value=6.4e-08  Score=69.30  Aligned_cols=74  Identities=16%  Similarity=0.258  Sum_probs=56.1

Q ss_pred             CCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------HHHHHhCCCC----
Q 029703           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------KDLVKRGNIS----  151 (189)
Q Consensus        97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~----  151 (189)
                      ++.+|++|+++||++|+...|.|.++.+++. .++.++.|..+...                    ..+.+.|++.    
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~  103 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLP  103 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCc
Confidence            4445555569999999999999999999984 46888888876532                    1267778874    


Q ss_pred             -------------------------CCCeEEEEe-CCeEEEEEeC
Q 029703          152 -------------------------KMPTIQIWK-DGEMKSEVIG  170 (189)
Q Consensus       152 -------------------------~~Pt~~~~~-~G~~~~~~~g  170 (189)
                                               ..|+.+++. +|+++..+.|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~  148 (149)
T cd02970         104 WSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD  148 (149)
T ss_pred             HHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence                                     789888885 7887776655

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.81  E-value=1.3e-07  Score=72.32  Aligned_cols=78  Identities=15%  Similarity=0.158  Sum_probs=63.2

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC----------hHHHHHhCCCCCCCeEEEEe-CC-
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----------SKDLVKRGNISKMPTIQIWK-DG-  162 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~----------~~~l~~~~~i~~~Pt~~~~~-~G-  162 (189)
                      ..++.-|++||.+.|+.|+.+.|++..+++++  ++.+..|++|..          ...++++++|..+|+++++. ++ 
T Consensus       118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~  195 (215)
T PF13728_consen  118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK  195 (215)
T ss_pred             HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence            35788899999999999999999999999999  466666666531          12489999999999999996 44 


Q ss_pred             eEEEEEeCCCcc
Q 029703          163 EMKSEVIGGHKA  174 (189)
Q Consensus       163 ~~~~~~~g~~~~  174 (189)
                      +....-.|..+.
T Consensus       196 ~~~pv~~G~~s~  207 (215)
T PF13728_consen  196 KWYPVSQGFMSL  207 (215)
T ss_pred             eEEEEeeecCCH
Confidence            566677788887

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.79  E-value=6.4e-08  Score=69.15  Aligned_cols=76  Identities=11%  Similarity=0.087  Sum_probs=61.5

Q ss_pred             CCCcEEEEEecCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC---------------------h-HHHHHhCCCCC
Q 029703           96 LSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---------------------S-KDLVKRGNISK  152 (189)
Q Consensus        96 ~~k~~vv~f~a~w-C~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~---------------------~-~~l~~~~~i~~  152 (189)
                      .+|++||+||+.| |++|+...|.+.++.+++ .++.++.|+.+..                     . ..+++.|++..
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  103 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI  103 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence            4789999999998 699999999999999998 5788888887531                     1 23677888763


Q ss_pred             ------CCeEEEEe-CCeEEEEEeCCC
Q 029703          153 ------MPTIQIWK-DGEMKSEVIGGH  172 (189)
Q Consensus       153 ------~Pt~~~~~-~G~~~~~~~g~~  172 (189)
                            .|+.+++. +|+++....|..
T Consensus       104 ~~~~~~~~~~~iid~~G~I~~~~~~~~  130 (143)
T cd03014         104 KDLGLLARAVFVIDENGKVIYVELVPE  130 (143)
T ss_pred             ccCCccceEEEEEcCCCeEEEEEECCC
Confidence                  68888886 999999888753

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=98.78  E-value=1.5e-07  Score=63.31  Aligned_cols=90  Identities=20%  Similarity=0.369  Sum_probs=66.2

Q ss_pred             eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCCCC-CC
Q 029703           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNIS-KM  153 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i~-~~  153 (189)
                      ..+++.+++++++..  +..++++|+=+++.|+-..+....|++......+++.++.+|+-.+.   +.++.+|||. .-
T Consensus         2 ~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS   79 (105)
T PF11009_consen    2 KPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES   79 (105)
T ss_dssp             -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred             CccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence            457889999999965  35899999999999999999999999999988556999999998874   3589999998 79


Q ss_pred             CeEEEEeCCeEEEEEe
Q 029703          154 PTIQIWKDGEMKSEVI  169 (189)
Q Consensus       154 Pt~~~~~~G~~~~~~~  169 (189)
                      |.+++++||+.+..-.
T Consensus        80 PQ~ili~~g~~v~~aS   95 (105)
T PF11009_consen   80 PQVILIKNGKVVWHAS   95 (105)
T ss_dssp             SEEEEEETTEEEEEEE
T ss_pred             CcEEEEECCEEEEECc
Confidence            9999999999987543

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.78  E-value=1.2e-07  Score=68.59  Aligned_cols=90  Identities=11%  Similarity=0.094  Sum_probs=66.3

Q ss_pred             CCCcEEEEEecC-CChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------HHHHHhCCCCCC
Q 029703           96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------KDLVKRGNISKM  153 (189)
Q Consensus        96 ~~k~~vv~f~a~-wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~~~  153 (189)
                      .+++++|+||+. ||+.|....+.+.++.++++ .++.++.|..+...                    ..+++.|++...
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  108 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE  108 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence            578999999976 68889999999999999884 45888888775422                    137788888654


Q ss_pred             ------------CeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          154 ------------PTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       154 ------------Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                                  |+.+++. +|+++..+.|.... ...+++.++++
T Consensus       109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~-~~~~~~~~~~~  153 (154)
T PRK09437        109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS-NHHDVVLDYLK  153 (154)
T ss_pred             cccccccccCcceEEEEECCCCEEEEEEcCCCcc-hhHHHHHHHHh
Confidence                        6667775 99999999997665 22344555443

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.78  E-value=1.1e-07  Score=68.23  Aligned_cols=89  Identities=10%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             CCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC--------------------h--HHHHHhCCCCC
Q 029703           97 SQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV--------------------S--KDLVKRGNISK  152 (189)
Q Consensus        97 ~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~--------------------~--~~l~~~~~i~~  152 (189)
                      +++++|.|| ++||+.|....|.+.++.+++. .++.++.|..+..                    .  ..+++.|++..
T Consensus        28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~  107 (149)
T cd03018          28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD  107 (149)
T ss_pred             CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence            378888887 9999999999999999999984 4678877766531                    1  23677888873


Q ss_pred             ----C--CeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHH
Q 029703          153 ----M--PTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       153 ----~--Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                          .  |+.+++. +|+++.++.|..........+.+.|
T Consensus       108 ~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~  147 (149)
T cd03018         108 EDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL  147 (149)
T ss_pred             ccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence                3  3777885 9999999988762222224455444

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.71  E-value=6.2e-08  Score=62.68  Aligned_cols=61  Identities=20%  Similarity=0.266  Sum_probs=46.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH----HHHHhCCCCCCCeEEEEeCCeEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----DLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~----~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      ++.|+++||++|+.+.+.|.++.  ..+.+.++.+|.+....    .+.+.+++.++|+++  .+|+.+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~i   65 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKFI   65 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence            47899999999999999998875  33447788888765432    266778999999974  478653

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>KOG3414 consensus Component of the U4/U6

Probab=98.71  E-value=2.6e-07  Score=63.31  Aligned_cols=86  Identities=19%  Similarity=0.369  Sum_probs=75.3

Q ss_pred             eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      .++.+.+..++++..  ...+.+||-|.-.|-+.|..|...|.++++....-..++-+|+++.+. +.+.|++...||++
T Consensus         6 p~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~-~~~~~~l~~p~tvm   82 (142)
T KOG3414|consen    6 PTLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD-FVKMYELYDPPTVM   82 (142)
T ss_pred             cccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh-hhhhhcccCCceEE
Confidence            346778888888865  568999999999999999999999999999997778899999998885 99999999999999


Q ss_pred             EEeCCeEEE
Q 029703          158 IWKDGEMKS  166 (189)
Q Consensus       158 ~~~~G~~~~  166 (189)
                      +|-+++.+.
T Consensus        83 fFfn~kHmk   91 (142)
T KOG3414|consen   83 FFFNNKHMK   91 (142)
T ss_pred             EEEcCceEE
Confidence            997776554

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.67  E-value=9.4e-07  Score=61.36  Aligned_cols=89  Identities=19%  Similarity=0.333  Sum_probs=72.0

Q ss_pred             eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCe-E
Q 029703           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT-I  156 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt-~  156 (189)
                      .++.+....++++..  .+++.++|-|..+|-+.|.++...|.+++++.++-..++.+|+++.+. +.+.|.+. -|. +
T Consensus         3 ~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd-fn~~yel~-dP~tv   78 (133)
T PF02966_consen    3 PHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD-FNQMYELY-DPCTV   78 (133)
T ss_dssp             EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC-CHHHTTS--SSEEE
T ss_pred             cccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh-hhcccccC-CCeEE
Confidence            457788999999876  679999999999999999999999999999998888999999999995 89999999 775 5


Q ss_pred             EEEeCCeEEEEEeC
Q 029703          157 QIWKDGEMKSEVIG  170 (189)
Q Consensus       157 ~~~~~G~~~~~~~g  170 (189)
                      +||-+++.+.--.|
T Consensus        79 mFF~rnkhm~vD~G   92 (133)
T PF02966_consen   79 MFFFRNKHMMVDFG   92 (133)
T ss_dssp             EEEETTEEEEEESS
T ss_pred             EEEecCeEEEEEec
Confidence            55557776553334

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.66  E-value=2e-07  Score=60.76  Aligned_cols=76  Identities=24%  Similarity=0.383  Sum_probs=56.7

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCC--CCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGN--ISKMPTIQIWKDGEMKSEVIGGHKA  174 (189)
Q Consensus       100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~--i~~~Pt~~~~~~G~~~~~~~g~~~~  174 (189)
                      -++.|+.+||++|++....|+++..++ .++.+..+|++...   +++....+  +..+|+++  .+|+.+.   |.   
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig---g~---   72 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG---GC---   72 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc---CH---
Confidence            367899999999999999999998876 57888899988652   23555555  58999975  4887642   33   


Q ss_pred             hhhHHHHHHHHHhh
Q 029703          175 WLVIEEVREMIKKF  188 (189)
Q Consensus       175 ~~~~~~l~~~i~~~  188 (189)
                          ++|.++++.+
T Consensus        73 ----~~~~~~~~~~   82 (85)
T PRK11200         73 ----TDFEAYVKEN   82 (85)
T ss_pred             ----HHHHHHHHHh
Confidence                5677777654

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.66  E-value=2.8e-07  Score=65.30  Aligned_cols=78  Identities=14%  Similarity=0.132  Sum_probs=62.6

Q ss_pred             CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh---------------------HHHHHhCCCCC
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------KDLVKRGNISK  152 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------~~l~~~~~i~~  152 (189)
                      .+++++|.|| +.||++|....+.+.++.++++ ..+.++.|..+...                     ..+++.|++..
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~  100 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI  100 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence            5889999999 7899999999999999999883 46888888775421                     13778888887


Q ss_pred             CC---------eEEEEe-CCeEEEEEeCCCc
Q 029703          153 MP---------TIQIWK-DGEMKSEVIGGHK  173 (189)
Q Consensus       153 ~P---------t~~~~~-~G~~~~~~~g~~~  173 (189)
                      .|         ++++++ +|+++.++.|...
T Consensus       101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~  131 (140)
T cd02971         101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP  131 (140)
T ss_pred             ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence            76         777776 7999999988764

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.65  E-value=8.2e-08  Score=68.31  Aligned_cols=44  Identities=14%  Similarity=0.401  Sum_probs=38.1

Q ss_pred             CCCcEEEEEecCCChh-hhhhhHHHHHHHHHhCC----CeEEEEEEccC
Q 029703           96 LSQPILIDWMASWCRK-CIYLKPKLEKLAAEFDT----KLKFYYVDVNK  139 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~-C~~~~~~l~~~~~~~~~----~v~~~~vd~~~  139 (189)
                      .+++++|.||++||++ |....+.+.++.++++.    ++.++.|..+.
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            5789999999999998 99999999999999853    48888887653

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.65  E-value=6.8e-07  Score=66.98  Aligned_cols=91  Identities=10%  Similarity=0.048  Sum_probs=64.9

Q ss_pred             CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh------------------------HHHHHhCC
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS------------------------KDLVKRGN  149 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~------------------------~~l~~~~~  149 (189)
                      .+|++||+|| +.||+.|....+.|.++.+++. .++.++.|..+...                        ..+++.|+
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            4679999999 9999999999999999999984 45777777665421                        24788999


Q ss_pred             C----CCC--CeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          150 I----SKM--PTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       150 i----~~~--Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      +    .++  |+.+++. +|+++..+......+.-.+++.+.|+
T Consensus       110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~  153 (187)
T PRK10382        110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK  153 (187)
T ss_pred             CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            8    356  9999996 99988766543222222244444443

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=2.1e-07  Score=63.29  Aligned_cols=80  Identities=21%  Similarity=0.469  Sum_probs=63.3

Q ss_pred             CChhHHHHHHHHhhcCCCcEEEEEec--------CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh------HHHHH
Q 029703           81 NDSDHLDQILLRAQELSQPILIDWMA--------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS------KDLVK  146 (189)
Q Consensus        81 ~~~~~~~~~~~~a~~~~k~~vv~f~a--------~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~------~~l~~  146 (189)
                      ...+.|++.+..- .+++.++|+|++        +|||.|.+..|.+.+..+....++.|+.+++..-+      ..+..
T Consensus        10 ~g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~   88 (128)
T KOG3425|consen   10 PGYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRK   88 (128)
T ss_pred             chHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcccc
Confidence            4467888888654 345559999986        69999999999999998877788999999987543      13666


Q ss_pred             hCCC-CCCCeEEEEeC
Q 029703          147 RGNI-SKMPTIQIWKD  161 (189)
Q Consensus       147 ~~~i-~~~Pt~~~~~~  161 (189)
                      ..++ +++||++-+++
T Consensus        89 d~~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   89 DPGILTAVPTLLRWKR  104 (128)
T ss_pred             CCCceeecceeeEEcC
Confidence            6777 99999998864

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.64  E-value=8.5e-07  Score=69.27  Aligned_cols=89  Identities=10%  Similarity=0.105  Sum_probs=68.8

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh----------HHHHHhCCCCCCCeEEEEe-C-Ce
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------KDLVKRGNISKMPTIQIWK-D-GE  163 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------~~l~~~~~i~~~Pt~~~~~-~-G~  163 (189)
                      .++.-+++||.+.|+.|+++.|+++.++++++  +.+..|++|...          ..++++++|..+|+++++. + ++
T Consensus       149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~  226 (256)
T TIGR02739       149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK  226 (256)
T ss_pred             HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence            46689999999999999999999999999994  555555555431          1378999999999999996 4 56


Q ss_pred             EEEEEeCCCcchhhHHHHHHHHH
Q 029703          164 MKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       164 ~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      ...--.|..+.+.+.+.+...+.
T Consensus       227 ~~pv~~G~iS~deL~~Ri~~v~~  249 (256)
T TIGR02739       227 MSPLAYGFISQDELKERILNVLT  249 (256)
T ss_pred             EEEEeeccCCHHHHHHHHHHHHh
Confidence            66677799998666555554443

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=2.7e-08  Score=74.89  Aligned_cols=89  Identities=12%  Similarity=0.244  Sum_probs=78.2

Q ss_pred             eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      ..+...++|  ..    ...+..++.||++||.+|+.+...+..+++.. .++.+++++.+..++ ++..+.+..+|.++
T Consensus         4 ~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~e-is~~~~v~~vp~~~   75 (227)
T KOG0911|consen    4 QFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPE-ISNLIAVEAVPYFV   75 (227)
T ss_pred             eeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhH-HHHHHHHhcCceee
Confidence            334556667  33    47899999999999999999999999999988 889999999999996 99999999999999


Q ss_pred             EEeCCeEEEEEeCCCcc
Q 029703          158 IWKDGEMKSEVIGGHKA  174 (189)
Q Consensus       158 ~~~~G~~~~~~~g~~~~  174 (189)
                      ++..|+.+.+..|....
T Consensus        76 ~~~~~~~v~~l~~~~~~   92 (227)
T KOG0911|consen   76 FFFLGEKVDRLSGADPP   92 (227)
T ss_pred             eeecchhhhhhhccCcH
Confidence            99999999999888765

>PRK15000 peroxidase; Provisional

Probab=98.62  E-value=6.6e-07  Score=67.80  Aligned_cols=91  Identities=13%  Similarity=0.166  Sum_probs=69.0

Q ss_pred             CCCcEEEEEec-CCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh---------------------------HHHHH
Q 029703           96 LSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------------KDLVK  146 (189)
Q Consensus        96 ~~k~~vv~f~a-~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------------~~l~~  146 (189)
                      .+++++|+||+ .||+.|....+.|.+++++++ .++.++.|.++...                           ..+++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~  112 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK  112 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence            57899999999 599999999999999999984 45777777766321                           13677


Q ss_pred             hCCCC------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          147 RGNIS------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       147 ~~~i~------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      .|++.      .+|+.+++. +|++...+.+....+.-.+++...|+
T Consensus       113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~  159 (200)
T PRK15000        113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVD  159 (200)
T ss_pred             HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence            88987      799999996 99998887775544433455555554

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.56  E-value=7.5e-07  Score=66.48  Aligned_cols=42  Identities=19%  Similarity=0.161  Sum_probs=36.7

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEcc
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN  138 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~  138 (189)
                      .+|++||.|||+||++|+. .+.|+++.++|++ .+.++.+.++
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence            5799999999999999974 8899999999953 6889999885

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=98.55  E-value=1.7e-07  Score=70.01  Aligned_cols=114  Identities=17%  Similarity=0.275  Sum_probs=91.6

Q ss_pred             CCCccceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCC
Q 029703           71 RPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI  150 (189)
Q Consensus        71 ~~~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i  150 (189)
                      .|.-..+.++.+..+|.+.+... .+.-.++|..|-+.-+-|..+...+.-+|.+| +.++|+++..+.-.  ...+|..
T Consensus       134 gp~~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~g--as~~F~~  209 (273)
T KOG3171|consen  134 GPRYGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNTG--ASDRFSL  209 (273)
T ss_pred             CCccceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeecccc--chhhhcc
Confidence            34455678889999999999532 23457888999999999999999999999999 89999999887654  5889999


Q ss_pred             CCCCeEEEEeCCeEEEEEeCC---CcchhhHHHHHHHHHhh
Q 029703          151 SKMPTIQIWKDGEMKSEVIGG---HKAWLVIEEVREMIKKF  188 (189)
Q Consensus       151 ~~~Pt~~~~~~G~~~~~~~g~---~~~~~~~~~l~~~i~~~  188 (189)
                      ..+||+++|++|+.+..+...   ...+.+...|..||+++
T Consensus       210 n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~  250 (273)
T KOG3171|consen  210 NVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY  250 (273)
T ss_pred             cCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence            999999999999998755432   33455667788888764

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.55  E-value=1.1e-06  Score=66.75  Aligned_cols=88  Identities=14%  Similarity=0.221  Sum_probs=62.7

Q ss_pred             CCCcEEE-EEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC--------------------------hHHHHHh
Q 029703           96 LSQPILI-DWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV--------------------------SKDLVKR  147 (189)
Q Consensus        96 ~~k~~vv-~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~--------------------------~~~l~~~  147 (189)
                      .++.++| .||++||+.|....+.|.++.++++ .++.++.|.++..                          ...+++.
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~  105 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE  105 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence            3565555 6899999999999999999999884 3577777766531                          1237888


Q ss_pred             CCCC------CCCeEEEEe-CCeEEEEE----eCCCcchhhHHHHHHHHHh
Q 029703          148 GNIS------KMPTIQIWK-DGEMKSEV----IGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       148 ~~i~------~~Pt~~~~~-~G~~~~~~----~g~~~~~~~~~~l~~~i~~  187 (189)
                      ||+.      .+|+.+++. +|++....    .+.++.    +++...|+.
T Consensus       106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~----~ellr~l~~  152 (202)
T PRK13190        106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNI----DEIIRITKA  152 (202)
T ss_pred             cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCH----HHHHHHHHH
Confidence            8984      589999996 89887655    334555    555555543

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.51  E-value=1.3e-06  Score=75.79  Aligned_cols=138  Identities=16%  Similarity=0.216  Sum_probs=89.9

Q ss_pred             CccccCCCcccccee-cC--ceEEEeCCCccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCCCcEEE
Q 029703           26 QPWSSGSSSCLLLQK-NS--AFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILI  102 (189)
Q Consensus        26 ~~~~i~g~Ptl~~~~-~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv  102 (189)
                      ..|++...|++.+.+ ++  ....|.|...--+..- + +.... ....+. ..   + +. ...+.+.   .=++++-|
T Consensus       413 ~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s-~-i~~i~-~~~~~~-~~---l-~~-~~~~~i~---~~~~~~~i  480 (555)
T TIGR03143       413 TLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNS-F-ILALY-NAAGPG-QP---L-GE-ELLEKIK---KITKPVNI  480 (555)
T ss_pred             hhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHH-H-HHHHH-HhcCCC-CC---C-CH-HHHHHHH---hcCCCeEE
Confidence            567888899999986 33  2266666432211000 0 11111 111111 11   1 23 3333332   33566644


Q ss_pred             -EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHH
Q 029703          103 -DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEV  181 (189)
Q Consensus       103 -~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l  181 (189)
                       .|.+++|+.|......+.+++.+. +++..-.+|....++ ++++|+|.++|++++  ||+.+  +.|..+.    +++
T Consensus       481 ~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i~~~~i~~~~~~~-~~~~~~v~~vP~~~i--~~~~~--~~G~~~~----~~~  550 (555)
T TIGR03143       481 KIGVSLSCTLCPDVVLAAQRIASLN-PNVEAEMIDVSHFPD-LKDEYGIMSVPAIVV--DDQQV--YFGKKTI----EEM  550 (555)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHhC-CCceEEEEECcccHH-HHHhCCceecCEEEE--CCEEE--EeeCCCH----HHH
Confidence             557999999999999999999886 689999999999985 999999999999876  88754  5687777    677


Q ss_pred             HHHH
Q 029703          182 REMI  185 (189)
Q Consensus       182 ~~~i  185 (189)
                      .++|
T Consensus       551 ~~~~  554 (555)
T TIGR03143       551 LELI  554 (555)
T ss_pred             HHhh
Confidence            6665

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.51  E-value=2.2e-06  Score=65.03  Aligned_cols=89  Identities=18%  Similarity=0.233  Sum_probs=62.6

Q ss_pred             cEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------------HHHHHhCCCC
Q 029703           99 PILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------------KDLVKRGNIS  151 (189)
Q Consensus        99 ~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------------~~l~~~~~i~  151 (189)
                      .+|+.|+++||+.|....+.|.++.++++ .++.++.|.++...                          ..+++.|++.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~  107 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI  107 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence            45557899999999999999999999984 45788887766421                          2478889876


Q ss_pred             ----C----CCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          152 ----K----MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       152 ----~----~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                          +    +|+.+++. +|++...+.+........+++...|+.
T Consensus       108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~  152 (203)
T cd03016         108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA  152 (203)
T ss_pred             cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence                2    34577775 999888776644333333556665543

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.50  E-value=2.4e-06  Score=65.45  Aligned_cols=92  Identities=12%  Similarity=0.161  Sum_probs=64.2

Q ss_pred             CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------------HHHHHh
Q 029703           96 LSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------------KDLVKR  147 (189)
Q Consensus        96 ~~k~-~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------------~~l~~~  147 (189)
                      .++. +|+.|+++||+.|....+.+.++.+++. .++.++.+.++...                          ..+++.
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~  106 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ  106 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence            3555 4678899999999999999999999984 46788877776521                          137888


Q ss_pred             CCCC-------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          148 GNIS-------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       148 ~~i~-------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      ||+.       .+|+++++. +|+++..+......+.-.+++...|+.
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~  154 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA  154 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            8873       689999996 899877654322222222555555543

>PTZ00062 glutaredoxin; Provisional

Probab=98.48  E-value=6.5e-07  Score=67.78  Aligned_cols=116  Identities=13%  Similarity=0.174  Sum_probs=67.5

Q ss_pred             CccccCCCccccceecCce-EEEeCCCccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCCCcEEEEE
Q 029703           26 QPWSSGSSSCLLLQKNSAF-FWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDW  104 (189)
Q Consensus        26 ~~~~i~g~Ptl~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f  104 (189)
                      ..|+|.++||+.+|++|.. .-+.|..-.+....      .......++...     ..+-+++++     +..+++|+-
T Consensus        56 ~d~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~------~~~~~~~~~~~~-----~~~~v~~li-----~~~~Vvvf~  119 (204)
T PTZ00062         56 LADANNEYGVFEFYQNSQLINSLEGCNTSTLVSF------IRGWAQKGSSED-----TVEKIERLI-----RNHKILLFM  119 (204)
T ss_pred             cccCcccceEEEEEECCEEEeeeeCCCHHHHHHH------HHHHcCCCCHHH-----HHHHHHHHH-----hcCCEEEEE
Confidence            3499999999999999877 44444432211111      001111111100     123455555     345555543


Q ss_pred             e----cCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEE
Q 029703          105 M----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       105 ~----a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      -    .|||++|+++...|.+.      ++.+..+|+++.++   .+.+..+...+|.+.+  +|+.+
T Consensus       120 Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I  179 (204)
T PTZ00062        120 KGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI  179 (204)
T ss_pred             ccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence            3    37999999987777643      46677788876642   2444457778888654  88764

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=98.48  E-value=1.7e-06  Score=61.96  Aligned_cols=41  Identities=22%  Similarity=0.440  Sum_probs=33.2

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEE
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD  136 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd  136 (189)
                      .+.++.++.|+.++|++|+.+.|.+.++..++ +++.+...+
T Consensus         3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~   43 (154)
T cd03023           3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKE   43 (154)
T ss_pred             CCCCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEe
Confidence            35788999999999999999999999988776 455555443

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.45  E-value=4.2e-06  Score=65.08  Aligned_cols=89  Identities=9%  Similarity=-0.005  Sum_probs=66.5

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh--------HHHHHhCCCCCCCeEEEEe--CCeEE
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--------KDLVKRGNISKMPTIQIWK--DGEMK  165 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~--------~~l~~~~~i~~~Pt~~~~~--~G~~~  165 (189)
                      .++.-|++||.+.|+.|.++.|+++.++++++=.+..+.+|..-.+        ...+++++|..+|+++++.  .++..
T Consensus       142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~  221 (248)
T PRK13703        142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR  221 (248)
T ss_pred             HhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence            3568899999999999999999999999999544444555432221        1257899999999999996  45666


Q ss_pred             EEEeCCCcchhhHHHHHHH
Q 029703          166 SEVIGGHKAWLVIEEVREM  184 (189)
Q Consensus       166 ~~~~g~~~~~~~~~~l~~~  184 (189)
                      .--.|..+.+.+.+.+...
T Consensus       222 pv~~G~iS~deL~~Ri~~v  240 (248)
T PRK13703        222 PLSYGFITQDDLAKRFLNV  240 (248)
T ss_pred             EEeeccCCHHHHHHHHHHH
Confidence            7778999985555555443

>PRK13189 peroxiredoxin; Provisional

Probab=98.43  E-value=4.3e-06  Score=64.36  Aligned_cols=92  Identities=13%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             CCC-cEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------------HHHHHh
Q 029703           96 LSQ-PILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------------KDLVKR  147 (189)
Q Consensus        96 ~~k-~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------------~~l~~~  147 (189)
                      .++ .+|+.|+++||+.|....+.|.+++++++ .++.++.|.++...                          ..+++.
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~  113 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK  113 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence            455 44557789999999999999999999884 45777777665321                          137888


Q ss_pred             CCCC-------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          148 GNIS-------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       148 ~~i~-------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      ||+.       .+|+.+++. +|++.....+....+...+++...|+.
T Consensus       114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a  161 (222)
T PRK13189        114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA  161 (222)
T ss_pred             hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            8875       578889996 998877665333222222555555543

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.41  E-value=2.3e-06  Score=53.39  Aligned_cols=68  Identities=22%  Similarity=0.352  Sum_probs=45.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhh
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLV  177 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~  177 (189)
                      ++.|+++||++|..+...+.+.      ++.+..+|++....   .+.+..++.++|++++  +|+   .+.|...    
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~~----   66 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFRP----   66 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCCH----
Confidence            5779999999999988777652      46677778776543   2333347899999875  553   4455433    


Q ss_pred             HHHHHHH
Q 029703          178 IEEVREM  184 (189)
Q Consensus       178 ~~~l~~~  184 (189)
                       +.|+++
T Consensus        67 -~~l~~~   72 (73)
T cd02976          67 -DKLRAL   72 (73)
T ss_pred             -HHHHhh
Confidence             455554

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=98.41  E-value=2e-06  Score=58.25  Aligned_cols=87  Identities=16%  Similarity=0.205  Sum_probs=66.4

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCC--ChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~w--C~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~  160 (189)
                      .+++++++    ......+++|.++.  ++.+....-++-++.+.+.+.+..+.++-..+. .+..+|++..+|++++++
T Consensus        16 ~~~ld~~l----~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~-~L~~r~gv~~~PaLvf~R   90 (107)
T PF07449_consen   16 ADTLDAFL----AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAER-ALAARFGVRRWPALVFFR   90 (107)
T ss_dssp             CCCHHHHH----HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHH-HHHHHHT-TSSSEEEEEE
T ss_pred             hhhHHHHH----hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHH-HHHHHhCCccCCeEEEEE
Confidence            66888888    56677776665432  344445556888888889788888888854444 599999999999999999


Q ss_pred             CCeEEEEEeCCCcc
Q 029703          161 DGEMKSEVIGGHKA  174 (189)
Q Consensus       161 ~G~~~~~~~g~~~~  174 (189)
                      +|+.++.+.|-++.
T Consensus        91 ~g~~lG~i~gi~dW  104 (107)
T PF07449_consen   91 DGRYLGAIEGIRDW  104 (107)
T ss_dssp             TTEEEEEEESSSTH
T ss_pred             CCEEEEEecCeecc
Confidence            99999999998876

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=98.39  E-value=7.9e-06  Score=59.24  Aligned_cols=84  Identities=26%  Similarity=0.448  Sum_probs=65.9

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHh--CCCeEEEEEEccCChH------------------------------
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSK------------------------------  142 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~--~~~v~~~~vd~~~~~~------------------------------  142 (189)
                      .+.+++|+.|+...|++|+.+.+.+.++.+++  .+++.+...+.-....                              
T Consensus        10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   89 (162)
T PF13462_consen   10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ   89 (162)
T ss_dssp             TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            35688999999999999999999999999998  7889888887632110                              


Q ss_pred             -------------------------------------HHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703          143 -------------------------------------DLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       143 -------------------------------------~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                                                           ..+.+++|.++||+++  ||+.+   .|..+.    ++|.++|
T Consensus        90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~----~~l~~~I  160 (162)
T PF13462_consen   90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTI----EELKELI  160 (162)
T ss_dssp             HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSH----HHHHHHH
T ss_pred             hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCH----HHHHHHH
Confidence                                                 0567789999999888  99874   777777    8888888


Q ss_pred             Hh
Q 029703          186 KK  187 (189)
Q Consensus       186 ~~  187 (189)
                      ++
T Consensus       161 d~  162 (162)
T PF13462_consen  161 DK  162 (162)
T ss_dssp             HH
T ss_pred             cC
Confidence            74

...

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.36  E-value=1.1e-05  Score=56.92  Aligned_cols=105  Identities=18%  Similarity=0.324  Sum_probs=76.6

Q ss_pred             ceeecCChhHHHHHHHHhhcCCCcEEEEEecC--CChh-h-hhhhHHHHHHHHHhCCC-eEEEEEEccCChHHHHHhCCC
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMAS--WCRK-C-IYLKPKLEKLAAEFDTK-LKFYYVDVNKVSKDLVKRGNI  150 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~--wC~~-C-~~~~~~l~~~~~~~~~~-v~~~~vd~~~~~~~l~~~~~i  150 (189)
                      ++.++++.+.++..=    .+++..+|-|.-.  .|.+ + ......+.++|++++++ +.|+.+|.+.... +.+.||+
T Consensus         3 ~~~~l~~~~~~~~~C----~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~-~~~~fgl   77 (130)
T cd02983           3 EIIELTSEDVFEETC----EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD-LEEALNI   77 (130)
T ss_pred             ceEEecCHHHHHhhc----cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH-HHHHcCC
Confidence            567777777777665    4567777777532  2322 3 35678999999999988 9999999999986 8999999


Q ss_pred             C--CCCeEEEEeCCeEEEE-EeCCCcchhhHHHHHHHHHhhC
Q 029703          151 S--KMPTIQIWKDGEMKSE-VIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       151 ~--~~Pt~~~~~~G~~~~~-~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      .  ++|+++++...+.... +.|..+.    +.|.+|+++++
T Consensus        78 ~~~~~P~v~i~~~~~~KY~~~~~~~t~----e~i~~Fv~~~l  115 (130)
T cd02983          78 GGFGYPAMVAINFRKMKFATLKGSFSE----DGINEFLRELS  115 (130)
T ss_pred             CccCCCEEEEEecccCccccccCccCH----HHHHHHHHHHH
Confidence            5  5999999963322333 5577676    77888877653

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PRK13191 putative peroxiredoxin; Provisional

Probab=98.34  E-value=1.1e-05  Score=61.87  Aligned_cols=91  Identities=13%  Similarity=0.125  Sum_probs=63.6

Q ss_pred             CCCcEEE-EEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------------HHHHHh
Q 029703           96 LSQPILI-DWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------------KDLVKR  147 (189)
Q Consensus        96 ~~k~~vv-~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------------~~l~~~  147 (189)
                      .+|+++| .|+++||+.|....+.|.+++++++ .++.++.+.+|...                          ..+++.
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~  111 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR  111 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence            3565554 7789999999999999999999984 46778877776432                          136777


Q ss_pred             CCCC-------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          148 GNIS-------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       148 ~~i~-------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      ||+.       ..|+.+++. +|++...+.+....+.-.+++...|+
T Consensus       112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~  158 (215)
T PRK13191        112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIR  158 (215)
T ss_pred             cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence            8863       478888886 99988876554333323355555544

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=98.34  E-value=3.7e-06  Score=65.14  Aligned_cols=82  Identities=15%  Similarity=0.269  Sum_probs=59.7

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC---Ch------------------------------
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VS------------------------------  141 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~---~~------------------------------  141 (189)
                      .+++..++.|..+.||+|+++.+.+.++.+   .++.+..+..--   ++                              
T Consensus       105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~  181 (232)
T PRK10877        105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP  181 (232)
T ss_pred             CCCCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence            356788999999999999999999887754   224443322110   00                              


Q ss_pred             ----------HHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          142 ----------KDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       142 ----------~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                                ..+++++||+++||++ +.||+.+   .|..+.    +.|.++|++
T Consensus       182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~----~~L~~~l~~  229 (232)
T PRK10877        182 ASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGP----KEMKAFLDE  229 (232)
T ss_pred             ccccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCH----HHHHHHHHH
Confidence                      1289999999999998 6789764   788888    788888765

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=98.33  E-value=1.1e-05  Score=63.43  Aligned_cols=74  Identities=15%  Similarity=0.130  Sum_probs=58.0

Q ss_pred             CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC---------------------------hHHHHH
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV---------------------------SKDLVK  146 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~---------------------------~~~l~~  146 (189)
                      .++++|++|| +.||++|....+.|.++.+++. .++.++.|.+|..                           ...+++
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak  176 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK  176 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence            4677888887 8999999999999999999984 4577777766541                           023788


Q ss_pred             hCCCC-----CCCeEEEEe-CCeEEEEEe
Q 029703          147 RGNIS-----KMPTIQIWK-DGEMKSEVI  169 (189)
Q Consensus       147 ~~~i~-----~~Pt~~~~~-~G~~~~~~~  169 (189)
                      .||+.     ..|+.++++ +|++...+.
T Consensus       177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~  205 (261)
T PTZ00137        177 SFGLLRDEGFSHRASVLVDKAGVVKHVAV  205 (261)
T ss_pred             HcCCCCcCCceecEEEEECCCCEEEEEEE
Confidence            99985     589999996 999887663

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.29  E-value=3e-06  Score=63.97  Aligned_cols=79  Identities=18%  Similarity=0.263  Sum_probs=55.2

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEc--cCCh-------------------------------
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV--NKVS-------------------------------  141 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~--~~~~-------------------------------  141 (189)
                      .+.+..++.|+.+.|++|+++.+.+.+    ..+++.+..+..  ...+                               
T Consensus        75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~  150 (197)
T cd03020          75 GNGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP  150 (197)
T ss_pred             CCCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence            346889999999999999999998876    123343333221  1100                               


Q ss_pred             -----------HHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703          142 -----------KDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       142 -----------~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                                 ..+++++||+++|+++ +.+|+.   +.|..+.    ++|.++|
T Consensus       151 ~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~----~~l~~~L  197 (197)
T cd03020         151 AASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPA----AQLEALL  197 (197)
T ss_pred             ccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCH----HHHHhhC
Confidence                       1278999999999997 778876   4687776    6676653

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=98.28  E-value=1.8e-05  Score=59.89  Aligned_cols=90  Identities=9%  Similarity=0.131  Sum_probs=64.2

Q ss_pred             CCCcEEEEEec-CCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh---------------------------HHHHH
Q 029703           96 LSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------------KDLVK  146 (189)
Q Consensus        96 ~~k~~vv~f~a-~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------------~~l~~  146 (189)
                      .++.++|+||. .||+.|....+.+.++++++. .++.++.|+++...                           .++++
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~  114 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR  114 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence            46789999994 889999988889999999984 36788877776321                           23788


Q ss_pred             hCCCC------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHH
Q 029703          147 RGNIS------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       147 ~~~i~------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      .||+.      .+|+.+++. +|+++..+.+......-.+++...|
T Consensus       115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l  160 (199)
T PTZ00253        115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLL  160 (199)
T ss_pred             HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence            88985      468888886 8988877666443333334444444

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.28  E-value=9.4e-06  Score=59.79  Aligned_cols=41  Identities=24%  Similarity=0.506  Sum_probs=34.6

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEE
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD  136 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd  136 (189)
                      +.++.|+.|+...|++|+.+.+.+..+.+++.+++.+..+.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~   54 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP   54 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence            57899999999999999999999999999886666665443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=98.27  E-value=8.2e-06  Score=64.34  Aligned_cols=134  Identities=16%  Similarity=0.204  Sum_probs=76.8

Q ss_pred             CccccCCCccccceecCceEEEeCCCccccccccceeeeecCCCCCCCccceeecCC-hhHHHHHHHHhhcCCCcEEEEE
Q 029703           26 QPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPIND-SDHLDQILLRAQELSQPILIDW  104 (189)
Q Consensus        26 ~~~~i~g~Ptl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~a~~~~k~~vv~f  104 (189)
                      ..++|+|||||++|+++-..+|.|++..+..     ++....- ..+   -+..+.. ...|.++-    +..++.+|+|
T Consensus        94 nefgiqGYPTIk~~kgd~a~dYRG~R~Kd~i-----ieFAhR~-a~a---iI~pi~enQ~~fehlq----~Rhq~ffVf~  160 (468)
T KOG4277|consen   94 NEFGIQGYPTIKFFKGDHAIDYRGGREKDAI-----IEFAHRC-AAA---IIEPINENQIEFEHLQ----ARHQPFFVFF  160 (468)
T ss_pred             hhhccCCCceEEEecCCeeeecCCCccHHHH-----HHHHHhc-ccc---eeeecChhHHHHHHHh----hccCceEEEE
Confidence            7789999999999999999999999776331     1111100 111   1222332 23344444    6789999999


Q ss_pred             ecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHh-CCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHH
Q 029703          105 MASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR-GNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVRE  183 (189)
Q Consensus       105 ~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~-~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~  183 (189)
                      .+..-|    +...+.+.+.+   ++.+.+.=.....  ++-. -.....|.+.+|++...--...|..      ++|.+
T Consensus       161 Gtge~P----L~d~fidAASe---~~~~a~FfSasee--VaPe~~~~kempaV~VFKDetf~i~de~dd------~dLse  225 (468)
T KOG4277|consen  161 GTGEGP----LFDAFIDAASE---KFSVARFFSASEE--VAPEENDAKEMPAVAVFKDETFEIEDEGDD------EDLSE  225 (468)
T ss_pred             eCCCCc----HHHHHHHHhhh---heeeeeeeccccc--cCCcccchhhccceEEEccceeEEEecCch------hHHHH
Confidence            765533    23344444443   2333332221111  2222 2356789999999875544444543      67888


Q ss_pred             HHHh
Q 029703          184 MIKK  187 (189)
Q Consensus       184 ~i~~  187 (189)
                      ||++
T Consensus       226 WinR  229 (468)
T KOG4277|consen  226 WINR  229 (468)
T ss_pred             HHhH
Confidence            8865

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.25  E-value=1.1e-05  Score=48.85  Aligned_cols=57  Identities=21%  Similarity=0.417  Sum_probs=43.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      ++.|+.+||++|++....|++      .++.+-.+|++..+.   ++.+..+..++|++++  +|+.+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I   60 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI   60 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence            577999999999998888743      357888888888742   3555559999999876  78653

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=98.25  E-value=8.8e-06  Score=53.19  Aligned_cols=75  Identities=27%  Similarity=0.473  Sum_probs=53.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCCC--CCCCeEEEEeCCeEEEEEeCCCcch
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNI--SKMPTIQIWKDGEMKSEVIGGHKAW  175 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i--~~~Pt~~~~~~G~~~~~~~g~~~~~  175 (189)
                      ++.|+.+||++|.+....|.++..++ +.+.+..+|++...   .++...++-  ..+|++++  +|+.    .|..   
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~----igG~---   71 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH----VGGC---   71 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE----ecCH---
Confidence            67789999999999999998876554 45778888887432   236666664  79999843  7765    3333   


Q ss_pred             hhHHHHHHHHHhh
Q 029703          176 LVIEEVREMIKKF  188 (189)
Q Consensus       176 ~~~~~l~~~i~~~  188 (189)
                         ++|.+++++.
T Consensus        72 ---~dl~~~~~~~   81 (86)
T TIGR02183        72 ---TDFEQLVKEN   81 (86)
T ss_pred             ---HHHHHHHHhc
Confidence               5677776653

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.22  E-value=2.3e-05  Score=51.99  Aligned_cols=93  Identities=16%  Similarity=0.233  Sum_probs=71.1

Q ss_pred             ecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEE
Q 029703           79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQI  158 (189)
Q Consensus        79 ~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~  158 (189)
                      .+.+.++++.++    ..+++++|-|+.++|+   .....+.++|+.+++.+.|+.+.   .. .+++.+++. .|++++
T Consensus         3 ~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~-~~~~~~~~~-~~~i~l   70 (97)
T cd02981           3 ELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DK-EVAKKLKVK-PGSVVL   70 (97)
T ss_pred             ecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hH-HHHHHcCCC-CCceEE
Confidence            466778888877    6889999999999988   56778899999987778887665   23 377778775 489999


Q ss_pred             EeCC-eEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          159 WKDG-EMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       159 ~~~G-~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      |+.. .....|.|..+.    +.|.+||..
T Consensus        71 ~~~~~~~~~~y~g~~~~----~~l~~fi~~   96 (97)
T cd02981          71 FKPFEEEPVEYDGEFTE----ESLVEFIKD   96 (97)
T ss_pred             eCCcccCCccCCCCCCH----HHHHHHHHh
Confidence            9753 444567887665    889999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.17  E-value=9e-06  Score=52.22  Aligned_cols=58  Identities=19%  Similarity=0.343  Sum_probs=43.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh----HHHHHhCCCCCCCeEEEEeCCeE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----KDLVKRGNISKMPTIQIWKDGEM  164 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----~~l~~~~~i~~~Pt~~~~~~G~~  164 (189)
                      ++.|+++||++|+.+.+.|.++..    .+.++.++.+...    ..+.+..++.++|++  |.+|+.
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~   63 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF   63 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence            577999999999999998887644    4567777776552    135566789999996  457765

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.13  E-value=2.9e-05  Score=53.25  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHH---hCCCeEEEEEEccCChHHHHHhCCCCC--CCeEE
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE---FDTKLKFYYVDVNKVSKDLVKRGNISK--MPTIQ  157 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~---~~~~v~~~~vd~~~~~~~l~~~~~i~~--~Pt~~  157 (189)
                      .++.....    ..+.+..+.|+++.  .-..+...+.+++++   +++++.|+.+|.+.... ..+.||++.  +|.+.
T Consensus         6 ~e~~~~~~----~~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~-~~~~fgl~~~~~P~i~   78 (111)
T cd03072           6 FENAEELT----EEGLPFLILFHDKD--DLESLKEFKQAVARQLISEKGAINFLTADGDKFRH-PLLHLGKTPADLPVIA   78 (111)
T ss_pred             cccHHHHh----cCCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh-HHHHcCCCHhHCCEEE
Confidence            55666777    56777776777332  335778899999999   99999999999999876 789999997  99999


Q ss_pred             EEeC-CeEEEE-EeCCCcchhhHHHHHHHHHhhC
Q 029703          158 IWKD-GEMKSE-VIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       158 ~~~~-G~~~~~-~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      +... +..... +.+..+.    +.|.+|+++++
T Consensus        79 i~~~~~~~Ky~~~~~~~t~----~~i~~Fv~~~~  108 (111)
T cd03072          79 IDSFRHMYLFPDFEDVYVP----GKLKQFVLDLH  108 (111)
T ss_pred             EEcchhcCcCCCCccccCH----HHHHHHHHHHh
Confidence            9863 312222 4455555    88888888763

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=98.12  E-value=2.7e-05  Score=61.02  Aligned_cols=84  Identities=15%  Similarity=0.225  Sum_probs=59.4

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEcc---CC--------------------------------
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN---KV--------------------------------  140 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~---~~--------------------------------  140 (189)
                      +.+.+|+.|..+.|++|+++.+.+.++.+.  +++.+..+...   ..                                
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~  193 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP  193 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence            457789999999999999999988776553  33444333210   00                                


Q ss_pred             ----h----------HHHHHhCCCCCCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          141 ----S----------KDLVKRGNISKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       141 ----~----------~~l~~~~~i~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                          .          ..+++++||+++|++++-+ +| .+....|..+.    ++|.++|.
T Consensus       194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~----~~L~~~l~  249 (251)
T PRK11657        194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDP----AQLAEIMG  249 (251)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCH----HHHHHHhC
Confidence                0          0277889999999999886 46 34567899888    77777765

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.12  E-value=3.8e-05  Score=61.72  Aligned_cols=96  Identities=22%  Similarity=0.298  Sum_probs=65.3

Q ss_pred             ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhh------hHHHHHHHHH-h-CCCeEEEEEEccCChHHHHHhCCCCCC
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYL------KPKLEKLAAE-F-DTKLKFYYVDVNKVSKDLVKRGNISKM  153 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~------~~~l~~~~~~-~-~~~v~~~~vd~~~~~~~l~~~~~i~~~  153 (189)
                      +..||++++    ++.+..+|+||.|--. -+..      ...+-+++.. + ...+.|+.||..+... +++++|+...
T Consensus        40 neKNfk~~l----Kkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~k-lAKKLgv~E~  113 (383)
T PF01216_consen   40 NEKNFKRAL----KKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAK-LAKKLGVEEE  113 (383)
T ss_dssp             -TTTHHHHH----HH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHH-HHHHHT--ST
T ss_pred             chhHHHHHH----HhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHH-HHHhcCcccc
Confidence            477999999    6788899999988632 2222      2323334433 3 3579999999999985 9999999999


Q ss_pred             CeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          154 PTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       154 Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +++.+|++|+.+ .|.|.+++    +.|.+||-.+
T Consensus       114 ~SiyVfkd~~~I-EydG~~sa----DtLVeFl~dl  143 (383)
T PF01216_consen  114 GSIYVFKDGEVI-EYDGERSA----DTLVEFLLDL  143 (383)
T ss_dssp             TEEEEEETTEEE-EE-S--SH----HHHHHHHHHH
T ss_pred             CcEEEEECCcEE-EecCccCH----HHHHHHHHHh
Confidence            999999999875 57799999    7777776543

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.12  E-value=3.8e-05  Score=66.27  Aligned_cols=72  Identities=18%  Similarity=0.219  Sum_probs=61.0

Q ss_pred             CCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA  174 (189)
Q Consensus        97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~  174 (189)
                      +..-+..|++++|++|......+.+++.+. +++.+-.+|....++ ++++|+|.++|++++  ||+.  .+.|..+.
T Consensus       116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~~~id~~~~~~-~~~~~~v~~VP~~~i--~~~~--~~~g~~~~  187 (517)
T PRK15317        116 GDFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITHTMIDGALFQD-EVEARNIMAVPTVFL--NGEE--FGQGRMTL  187 (517)
T ss_pred             CCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceEEEEEchhCHh-HHHhcCCcccCEEEE--CCcE--EEecCCCH
Confidence            444588899999999999999999998875 789999999999996 999999999999865  7764  36687777

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=98.07  E-value=2.6e-05  Score=50.07  Aligned_cols=61  Identities=15%  Similarity=0.280  Sum_probs=44.4

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh--HHHHHhCCCCCCCeEEEEeCCeE
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--KDLVKRGNISKMPTIQIWKDGEM  164 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~--~~l~~~~~i~~~Pt~~~~~~G~~  164 (189)
                      .++.-++.|+.+||++|++....|.+.      ++.+-.+|++...  ..+....+...+|.+++  +|+.
T Consensus         5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~   67 (79)
T TIGR02190         5 RKPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL   67 (79)
T ss_pred             CCCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence            455557789999999999998888642      4666667776552  23556678999999854  8865

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=98.06  E-value=4.5e-05  Score=52.31  Aligned_cols=74  Identities=20%  Similarity=0.343  Sum_probs=57.9

Q ss_pred             hhhhhhhHHHHHHHHHhC-CCeEEEEEEccCChHHHHHhCCCCC----CCeEEEEe-CCeEEEEEeCCC-cchhhHHHHH
Q 029703          110 RKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNISK----MPTIQIWK-DGEMKSEVIGGH-KAWLVIEEVR  182 (189)
Q Consensus       110 ~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~~~l~~~~~i~~----~Pt~~~~~-~G~~~~~~~g~~-~~~~~~~~l~  182 (189)
                      ..-..+...+.++|++++ +++.|+.+|.+.... ..+.||+..    +|++.++. ++ ......+.. +.    +.|.
T Consensus        31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~-~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~----e~i~  104 (111)
T cd03073          31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH-ELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDV----DALE  104 (111)
T ss_pred             hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH-HHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCH----HHHH
Confidence            444678899999999999 699999999998875 789999984    99999986 44 223334444 55    8999


Q ss_pred             HHHHhhC
Q 029703          183 EMIKKFV  189 (189)
Q Consensus       183 ~~i~~~l  189 (189)
                      +|+++++
T Consensus       105 ~F~~~f~  111 (111)
T cd03073         105 EFLEDFF  111 (111)
T ss_pred             HHHHHhC
Confidence            9998764

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=98.04  E-value=4.3e-05  Score=58.14  Aligned_cols=41  Identities=12%  Similarity=0.424  Sum_probs=33.1

Q ss_pred             CCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEc
Q 029703           97 SQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDV  137 (189)
Q Consensus        97 ~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~  137 (189)
                      +++-||.|++-.|++|..+.+.+   ..+.+.+.+++.+.++.+
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~   80 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV   80 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence            46779999999999999999876   778888866766666554

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.01  E-value=3.9e-05  Score=47.38  Aligned_cols=58  Identities=24%  Similarity=0.389  Sum_probs=42.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMKS  166 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~~  166 (189)
                      ++.|+++||++|+.+...|.+..      +.+..+|++...+   .+.+..+...+|+++  .+|+.+.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ig   62 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIG   62 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence            56788999999999998887652      6677888877652   345556788899874  4886643

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PHA03050 glutaredoxin; Provisional

Probab=97.95  E-value=6.7e-05  Score=51.17  Aligned_cols=61  Identities=13%  Similarity=0.098  Sum_probs=41.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC---C---hHHHHHhCCCCCCCeEEEEeCCeEEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---V---SKDLVKRGNISKMPTIQIWKDGEMKS  166 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~---~---~~~l~~~~~i~~~Pt~~~~~~G~~~~  166 (189)
                      |+.|..+|||+|++....|.+..-+. +  .+-.+|++.   .   .+.+.+..|...+|+++  .+|+.+.
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~-~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If--I~g~~iG   81 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKR-G--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIF--FGKTSIG   81 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCc-C--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE--ECCEEEe
Confidence            66799999999999888887653322 1  344555554   2   12466667889999974  3787653

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.90  E-value=0.00024  Score=45.87  Aligned_cols=71  Identities=13%  Similarity=0.281  Sum_probs=50.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHH--HHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhH
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD--LVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI  178 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~--l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~  178 (189)
                      +..|..+||++|......|.+      .++.|-.+|++..++.  ..+..+...+|++++  ++.   ...|...     
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~-----   66 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRP-----   66 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCH-----
Confidence            567889999999998877744      3588888899876641  233457889999864  553   3456655     


Q ss_pred             HHHHHHHHh
Q 029703          179 EEVREMIKK  187 (189)
Q Consensus       179 ~~l~~~i~~  187 (189)
                      ++|.+++..
T Consensus        67 ~~l~~~~~~   75 (81)
T PRK10329         67 DMINRLHPA   75 (81)
T ss_pred             HHHHHHHHh
Confidence            677777654

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=97.87  E-value=0.00014  Score=45.62  Aligned_cols=67  Identities=16%  Similarity=0.308  Sum_probs=46.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh--HHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhH
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--KDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI  178 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~--~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~  178 (189)
                      ++.|..+||+.|.+....|.+    +  ++.+-.+|++...  ..+....+...+|.++  .+|+.+.   |.       
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~----~--~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~ig---g~-------   64 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE----N--GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELIG---GS-------   64 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH----c--CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEEe---CH-------
Confidence            567889999999999777764    2  4666677776654  2344556899999973  4787542   32       


Q ss_pred             HHHHHHH
Q 029703          179 EEVREMI  185 (189)
Q Consensus       179 ~~l~~~i  185 (189)
                      ++|.+|+
T Consensus        65 ~~l~~~l   71 (72)
T cd03029          65 DDLEKYF   71 (72)
T ss_pred             HHHHHHh
Confidence            5676665

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.85  E-value=0.00012  Score=54.54  Aligned_cols=105  Identities=21%  Similarity=0.364  Sum_probs=78.5

Q ss_pred             cceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCC
Q 029703           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMP  154 (189)
Q Consensus        75 ~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~P  154 (189)
                      ..+.+|+.+ +|-+-+..| ..+-.|||..|...-+.|.-+...|+.++.+| +.++|+++-.+..    ...|.=...|
T Consensus        91 G~V~~ISg~-dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki~at~c----IpNYPe~nlP  163 (240)
T KOG3170|consen   91 GEVFPISGP-DYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKIPATTC----IPNYPESNLP  163 (240)
T ss_pred             cceeeccch-HHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEecccccc----cCCCcccCCC
Confidence            346667755 555555554 56778888999999999999999999999999 8999999876653    2345557899


Q ss_pred             eEEEEeCCeEEEEEeCCCc---chhhHHHHHHHHH
Q 029703          155 TIQIWKDGEMKSEVIGGHK---AWLVIEEVREMIK  186 (189)
Q Consensus       155 t~~~~~~G~~~~~~~g~~~---~~~~~~~l~~~i~  186 (189)
                      |+++|..|.+...+.|...   .+...+.+..++-
T Consensus       164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~  198 (240)
T KOG3170|consen  164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLV  198 (240)
T ss_pred             eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHH
Confidence            9999999988887777543   2234466666653

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.83  E-value=0.00062  Score=46.93  Aligned_cols=96  Identities=18%  Similarity=0.252  Sum_probs=68.2

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHH-HHh--CCCeEEEEEEccCC----hHHHHHhCCC--CCC
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLA-AEF--DTKLKFYYVDVNKV----SKDLVKRGNI--SKM  153 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~-~~~--~~~v~~~~vd~~~~----~~~l~~~~~i--~~~  153 (189)
                      .-+|++++    ...+.++|.|=...  |--.-...+.+++ +..  .+++.++.|.+.++    +.+|+++|+|  ..+
T Consensus        11 ~~tFdKvi----~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~f   84 (126)
T PF07912_consen   11 ELTFDKVI----PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDF   84 (126)
T ss_dssp             TTHHHHHG----GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-
T ss_pred             ceehhhee----ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccC
Confidence            55899999    78899999996544  2224456788888 433  36799999988764    2369999999  679


Q ss_pred             CeEEEEe-CCeEEEEE--eCCCcchhhHHHHHHHHHhh
Q 029703          154 PTIQIWK-DGEMKSEV--IGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       154 Pt~~~~~-~G~~~~~~--~g~~~~~~~~~~l~~~i~~~  188 (189)
                      |.+.+|. +.+..-++  .|..+.    +.|+.|+.++
T Consensus        85 Pv~~LF~~~~~~pv~~p~~~~~t~----~~l~~fvk~~  118 (126)
T PF07912_consen   85 PVIYLFVGDKEEPVRYPFDGDVTA----DNLQRFVKSN  118 (126)
T ss_dssp             SEEEEEESSTTSEEEE-TCS-S-H----HHHHHHHHHT
T ss_pred             CEEEEecCCCCCCccCCccCCccH----HHHHHHHHhC
Confidence            9999997 55555667  666666    9999999864

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.82  E-value=0.0001  Score=48.18  Aligned_cols=59  Identities=20%  Similarity=0.429  Sum_probs=44.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh-------------------------------HHHHHhCC
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-------------------------------KDLVKRGN  149 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~-------------------------------~~l~~~~~  149 (189)
                      ++.|+++.|++|..+.+.+.++.....+++.+....+.-..                               ...+.++|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            46799999999999999999998666677776665442211                               12567889


Q ss_pred             CCCCCeEEEE
Q 029703          150 ISKMPTIQIW  159 (189)
Q Consensus       150 i~~~Pt~~~~  159 (189)
                      +.++||+++.
T Consensus        81 ~~g~Pt~v~~   90 (98)
T cd02972          81 VTGTPTFVVN   90 (98)
T ss_pred             CCCCCEEEEC
Confidence            9999999884

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=97.81  E-value=0.00029  Score=47.04  Aligned_cols=68  Identities=16%  Similarity=0.275  Sum_probs=45.8

Q ss_pred             HHHHHHHHhhcCCCcEEEEEe----cCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEE
Q 029703           85 HLDQILLRAQELSQPILIDWM----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQ  157 (189)
Q Consensus        85 ~~~~~~~~a~~~~k~~vv~f~----a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~  157 (189)
                      ..++++     +..+++|+-.    .+||++|......|.+.      ++.+..+|++..+.   .+.+..|...+|.+.
T Consensus         4 ~v~~~i-----~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf   72 (97)
T TIGR00365         4 RIKEQI-----KENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY   72 (97)
T ss_pred             HHHHHh-----ccCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence            445555     3455666544    38999999988887653      35677788876542   355566788999974


Q ss_pred             EEeCCeEE
Q 029703          158 IWKDGEMK  165 (189)
Q Consensus       158 ~~~~G~~~  165 (189)
                        .+|+.+
T Consensus        73 --i~g~~i   78 (97)
T TIGR00365        73 --VKGEFV   78 (97)
T ss_pred             --ECCEEE
Confidence              478653

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.81  E-value=0.00014  Score=45.61  Aligned_cols=61  Identities=18%  Similarity=0.378  Sum_probs=42.6

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHH---hCCCCCCCeEEEEeCCeEEEEEeCCCc
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK---RGNISKMPTIQIWKDGEMKSEVIGGHK  173 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~---~~~i~~~Pt~~~~~~G~~~~~~~g~~~  173 (189)
                      ..|..++|++|++....|.+      .++.+-.+|++..+. ...   +.|...+|++++  +|+.  .+.|...
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~-~~~~~~~~g~~~vP~v~~--~g~~--~~~G~~~   65 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPE-AIDYVKAQGFRQVPVIVA--DGDL--SWSGFRP   65 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHH-HHHHHHHcCCcccCEEEE--CCCc--EEeccCH
Confidence            46788999999999888864      357778888887753 333   348889999754  5542  3455544

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=97.78  E-value=0.00011  Score=49.31  Aligned_cols=57  Identities=19%  Similarity=0.333  Sum_probs=38.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH------HHHHhCCCCCCCeEEEEeCCeEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK------DLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~------~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      ++.|..+|||+|++....|.+.      ++.+..+|++..++      .+.+..|...+|.+  |-+|+.+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i   72 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV   72 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence            5568899999999988877653      34445566654431      24444578899996  4478654

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.78  E-value=0.00024  Score=44.67  Aligned_cols=57  Identities=18%  Similarity=0.285  Sum_probs=40.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCC-CCCeEEEEeCCeEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS-KMPTIQIWKDGEMK  165 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~-~~Pt~~~~~~G~~~  165 (189)
                      ++.|+.+||++|......|.+.      ++.+-.+|++..++   .+.+..+.. ++|+++  .+|+.+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~i   62 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVHI   62 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEEE
Confidence            5678899999999988888652      46777778877643   234446766 999864  478654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.78  E-value=0.00037  Score=60.19  Aligned_cols=78  Identities=15%  Similarity=0.200  Sum_probs=62.9

Q ss_pred             CCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchh
Q 029703           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWL  176 (189)
Q Consensus        97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~  176 (189)
                      ++.-+-.|.++.|++|......+.+++.+. +++..-.+|....++ ++++|++.++|++++  ||+.  .+.|..+...
T Consensus       117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~~~-~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~  190 (515)
T TIGR03140       117 GPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALFQD-EVEALGIQGVPAVFL--NGEE--FHNGRMDLAE  190 (515)
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhCHH-HHHhcCCcccCEEEE--CCcE--EEecCCCHHH
Confidence            444588899999999999888888888876 789988999999996 999999999999875  6764  3668877743


Q ss_pred             hHHH
Q 029703          177 VIEE  180 (189)
Q Consensus       177 ~~~~  180 (189)
                      +.+.
T Consensus       191 ~~~~  194 (515)
T TIGR03140       191 LLEK  194 (515)
T ss_pred             HHHH
Confidence            3333

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.74  E-value=0.00016  Score=46.13  Aligned_cols=57  Identities=16%  Similarity=0.282  Sum_probs=40.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      ++.|+.+||++|......|++.      ++.+-.+|++..+.   ++.+..+..++|+++  .+|+.+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~~i   60 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDVHV   60 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence            3568899999999998888753      35666667776643   345556889999974  477654

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.74  E-value=0.00039  Score=60.60  Aligned_cols=96  Identities=21%  Similarity=0.235  Sum_probs=73.5

Q ss_pred             hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe-CC
Q 029703           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK-DG  162 (189)
Q Consensus        84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~-~G  162 (189)
                      ++++..+..  -.+...++.|+.+.|..|..+...++++++ +.+++.+...|..+... ++++|++...|++.+++ +|
T Consensus       355 ~~l~~~~~~--l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~-~~~~~~v~~~P~~~i~~~~~  430 (555)
T TIGR03143       355 QQLVGIFGR--LENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPE-SETLPKITKLPTVALLDDDG  430 (555)
T ss_pred             HHHHHHHHh--cCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchh-hHhhcCCCcCCEEEEEeCCC
Confidence            446666642  344456778888899999999999999885 45889998888877764 89999999999999995 66


Q ss_pred             eEE-EEEeCCCcchhhHHHHHHHHHh
Q 029703          163 EMK-SEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       163 ~~~-~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      +.. -+|.|....    .++..||..
T Consensus       431 ~~~~i~f~g~P~G----~Ef~s~i~~  452 (555)
T TIGR03143       431 NYTGLKFHGVPSG----HELNSFILA  452 (555)
T ss_pred             cccceEEEecCcc----HhHHHHHHH
Confidence            543 488898877    666666654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=97.73  E-value=0.0003  Score=44.23  Aligned_cols=57  Identities=16%  Similarity=0.309  Sum_probs=42.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      ++.|+.+||++|++....|++      .++.+-.+|++..+.   ++.+..+-..+|+++  .+|+.+
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~--i~~~~i   62 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIF--FNEKLV   62 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence            567889999999999888875      246677788877653   356666788999974  478654

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=97.63  E-value=0.00045  Score=45.44  Aligned_cols=62  Identities=18%  Similarity=0.308  Sum_probs=42.4

Q ss_pred             CCCcEEEEEec----CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEE
Q 029703           96 LSQPILIDWMA----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus        96 ~~k~~vv~f~a----~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      ++.+++|+-.+    +||++|+.....|.+.      .+.+-.+|++..++   .+.+..|...+|.+  |.+|+.+
T Consensus         6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~i   74 (90)
T cd03028           6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELV   74 (90)
T ss_pred             ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence            34566665443    7999999988887664      36677777766542   35555688899996  4478653

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.61  E-value=0.00077  Score=44.77  Aligned_cols=99  Identities=17%  Similarity=0.280  Sum_probs=74.4

Q ss_pred             ecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC-hHHHHHhCCCC----CC
Q 029703           79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-SKDLVKRGNIS----KM  153 (189)
Q Consensus        79 ~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~-~~~l~~~~~i~----~~  153 (189)
                      .|.+-.+|.+++    ....-|+|.|..+-=.. ......+.++|+..++.-+++.|||.+. ...||+.+.|.    --
T Consensus         5 ~i~d~KdfKKLL----RTr~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~   79 (112)
T cd03067           5 DISDHKDFKKLL----RTRNNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK   79 (112)
T ss_pred             cccchHHHHHHH----hhcCcEEEEEecchhhH-HHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence            466778999999    67788888887665332 2344588889999989999999999874 23599999998    55


Q ss_pred             C-eEEEEeCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          154 P-TIQIWKDGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       154 P-t~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      | ++.-|++|..-..|....+.    ..+..|+.
T Consensus        80 ~~~LkHYKdG~fHkdYdR~~t~----kSmv~Flr  109 (112)
T cd03067          80 PVELKHYKDGDFHTEYNRQLTF----KSMVAFLR  109 (112)
T ss_pred             cchhhcccCCCccccccchhhH----HHHHHHhh
Confidence            5 44557899887777776666    66666664

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.00061  Score=54.11  Aligned_cols=107  Identities=15%  Similarity=0.356  Sum_probs=77.0

Q ss_pred             eeecCChhHHHHHHHHhhcCCCcEEEEEecC----CChhhhhhhHHHHHHHHHhC------C--CeEEEEEEccCChHHH
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMAS----WCRKCIYLKPKLEKLAAEFD------T--KLKFYYVDVNKVSKDL  144 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~----wC~~C~~~~~~l~~~~~~~~------~--~v~~~~vd~~~~~~~l  144 (189)
                      +.+.+ .+.|.+++. +...+-.++|+|.|.    .|.-|+....++.-+++.+.      +  ++-|..||.++.++ +
T Consensus        42 VI~~n-~d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~-~  118 (331)
T KOG2603|consen   42 VIRMN-DDKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ-V  118 (331)
T ss_pred             eEEec-Ccchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH-H
Confidence            44444 568888885 224456688888864    69999999999999998862      1  57799999999996 8


Q ss_pred             HHhCCCCCCCeEEEEe--CCeEEE--EEeCCCcchhhHHHHHHHHHh
Q 029703          145 VKRGNISKMPTIQIWK--DGEMKS--EVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       145 ~~~~~i~~~Pt~~~~~--~G~~~~--~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      -+.++++++|++++|.  .|+...  .+.+... ....|++.+|+++
T Consensus       119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~-g~~Ae~iaqfv~~  164 (331)
T KOG2603|consen  119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDL-GFEAEQIAQFVAD  164 (331)
T ss_pred             HHHhcccCCCeEEEeCCCccccccCccchhhhc-chhHHHHHHHHHH
Confidence            9999999999999994  444331  2222111 1225888888875

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.54  E-value=0.00036  Score=44.94  Aligned_cols=76  Identities=26%  Similarity=0.448  Sum_probs=57.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC----eEEEEEeCCCcchh
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG----EMKSEVIGGHKAWL  176 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G----~~~~~~~g~~~~~~  176 (189)
                      ++.|..+.|+-|..+...+.++....  .+.+-.+|++.++. +..+|+. .+|.+.+  +|    .......+..+.  
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~-l~~~Y~~-~IPVl~~--~~~~~~~~~~~~~~~~d~--   73 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPE-LFEKYGY-RIPVLHI--DGIRQFKEQEELKWRFDE--   73 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHH-HHHHSCT-STSEEEE--TT-GGGCTSEEEESSB-H--
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHH-HHHHhcC-CCCEEEE--cCcccccccceeCCCCCH--
Confidence            67899999999999999998876554  58999999998885 9999995 8999665  44    112345566666  


Q ss_pred             hHHHHHHHHH
Q 029703          177 VIEEVREMIK  186 (189)
Q Consensus       177 ~~~~l~~~i~  186 (189)
                        +.|.++|+
T Consensus        74 --~~L~~~L~   81 (81)
T PF05768_consen   74 --EQLRAWLE   81 (81)
T ss_dssp             --HHHHHHHH
T ss_pred             --HHHHHHhC
Confidence              78888774

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00085  Score=45.33  Aligned_cols=69  Identities=19%  Similarity=0.362  Sum_probs=47.0

Q ss_pred             HHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHH----hCCCCCCCeEEEEe
Q 029703           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK----RGNISKMPTIQIWK  160 (189)
Q Consensus        85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~----~~~i~~~Pt~~~~~  160 (189)
                      ..++++     ...++|| |.-+||+.|..+...|.+    +.....++.+|-+.+..++.+    --+-+.+|.+++  
T Consensus         6 ~v~~~i-----~~~~VVi-fSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--   73 (104)
T KOG1752|consen    6 KVRKMI-----SENPVVI-FSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--   73 (104)
T ss_pred             HHHHHh-----hcCCEEE-EECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--
Confidence            445555     3455554 889999999997777766    555677888887766543433    345678998554  


Q ss_pred             CCeEE
Q 029703          161 DGEMK  165 (189)
Q Consensus       161 ~G~~~  165 (189)
                      +|+.+
T Consensus        74 ~Gk~i   78 (104)
T KOG1752|consen   74 GGKFI   78 (104)
T ss_pred             CCEEE
Confidence            88875

>PRK10638 glutaredoxin 3; Provisional

Probab=97.46  E-value=0.0011  Score=42.83  Aligned_cols=57  Identities=18%  Similarity=0.304  Sum_probs=41.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCCCCCCCeEEEEeCCeEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      ++.|..+||++|++....|.+.      .+.+..+|++..+   .++.+..+...+|+++  .+|+.+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~~i   63 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQHI   63 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence            5567889999999988887753      4566677777654   2355667888999874  378664

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.0013  Score=42.21  Aligned_cols=56  Identities=25%  Similarity=0.473  Sum_probs=39.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh----HHHHHhC-CCCCCCeEEEEeCCeE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----KDLVKRG-NISKMPTIQIWKDGEM  164 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----~~l~~~~-~i~~~Pt~~~~~~G~~  164 (189)
                      ++.|.-++||+|++....|.+      ..+.+..++++..+    ++..++. |.+.+|.+++  +|+.
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~   63 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKH   63 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEE
Confidence            567889999999998877762      35667777776655    2234444 7899999765  7763

>PRK10824 glutaredoxin-4; Provisional

Probab=97.34  E-value=0.0018  Score=44.54  Aligned_cols=70  Identities=23%  Similarity=0.396  Sum_probs=44.6

Q ss_pred             hHHHHHHHHhhcCCCcEEEEEec----CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeE
Q 029703           84 DHLDQILLRAQELSQPILIDWMA----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTI  156 (189)
Q Consensus        84 ~~~~~~~~~a~~~~k~~vv~f~a----~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~  156 (189)
                      +..++.+     ++.+|+|+--+    ||||+|++....|.++.      +.+..+|++..++   .+.+.-|...+|.+
T Consensus         6 ~~v~~~I-----~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQI   74 (115)
T PRK10824          6 EKIQRQI-----AENPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQL   74 (115)
T ss_pred             HHHHHHH-----hcCCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence            4455666     34556665443    69999999888886652      3444556655532   35555678899985


Q ss_pred             EEEeCCeEEE
Q 029703          157 QIWKDGEMKS  166 (189)
Q Consensus       157 ~~~~~G~~~~  166 (189)
                      .+  +|+.++
T Consensus        75 FI--~G~~IG   82 (115)
T PRK10824         75 WV--DGELVG   82 (115)
T ss_pred             EE--CCEEEc
Confidence            54  887753

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=97.29  E-value=0.0031  Score=48.60  Aligned_cols=49  Identities=12%  Similarity=0.316  Sum_probs=40.1

Q ss_pred             HHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEc
Q 029703           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (189)
Q Consensus        85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~  137 (189)
                      .+-+..    ++++|.|++|.|-.||+-+.-.+.++++++++.+.+.|+.|-+
T Consensus        94 ~ildf~----~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI  142 (237)
T PF00837_consen   94 RILDFA----KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI  142 (237)
T ss_pred             eHHHhc----cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence            455555    7899999999999999999999999999999976556655433

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.16  E-value=0.0099  Score=39.86  Aligned_cols=95  Identities=20%  Similarity=0.223  Sum_probs=66.1

Q ss_pred             eecCChhHHHHHHHHhhc-CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703           78 EPINDSDHLDQILLRAQE-LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~-~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      ..+++.+++++++    . ++..++|-|+..--+   .....+.++|+.++.++.|+...   .. .+...+++. .|++
T Consensus         3 ~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~-~~~~~~~~~-~~~i   70 (102)
T cd03066           3 EIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DS-KVAKKLGLK-MNEV   70 (102)
T ss_pred             eEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cH-HHHHHcCCC-CCcE
Confidence            4577888999999    6 677777767665444   35567888899887778885433   23 367777765 7999


Q ss_pred             EEEeC-CeEEEEE-eCCCcchhhHHHHHHHHHhh
Q 029703          157 QIWKD-GEMKSEV-IGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       157 ~~~~~-G~~~~~~-~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +++++ ......| .|..+.    +.|.+||...
T Consensus        71 ~l~~~~~e~~~~y~~g~~~~----~~l~~fi~~~  100 (102)
T cd03066          71 DFYEPFMEEPVTIPDKPYSE----EELVDFVEEH  100 (102)
T ss_pred             EEeCCCCCCCcccCCCCCCH----HHHHHHHHHh
Confidence            99964 3333457 565566    8999998753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=97.10  E-value=0.0026  Score=47.22  Aligned_cols=33  Identities=27%  Similarity=0.679  Sum_probs=25.7

Q ss_pred             EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEE
Q 029703          103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV  135 (189)
Q Consensus       103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v  135 (189)
                      +|..|.|+.|-.+.|.+.++..+++.++.+-.+
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i   34 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI   34 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence            588999999999999999999999777665444

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain

Probab=97.09  E-value=0.035  Score=39.39  Aligned_cols=99  Identities=14%  Similarity=0.142  Sum_probs=69.8

Q ss_pred             HHHHHHHHh----hcCCCcEEEEEecCCC----hhhhhhh--HHHHHHHHHhCCCeEEEEEEccCChH------------
Q 029703           85 HLDQILLRA----QELSQPILIDWMASWC----RKCIYLK--PKLEKLAAEFDTKLKFYYVDVNKVSK------------  142 (189)
Q Consensus        85 ~~~~~~~~a----~~~~k~~vv~f~a~wC----~~C~~~~--~~l~~~~~~~~~~v~~~~vd~~~~~~------------  142 (189)
                      .|++++..|    +++.|+.+|+.+++.-    ..|+...  +.+.++.   +.++.+..-|++....            
T Consensus         5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl---~~nfv~Wg~dvt~~~~~~~fl~~~~~~~   81 (136)
T cd02990           5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYL---SQNFITWGWDMTKESNKARFLSSCTRHF   81 (136)
T ss_pred             cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHH---HcCEEEEeeeccchhhhhHHHHhhhhhh
Confidence            456666665    6789999999999876    4454432  3444443   3568888888776531            


Q ss_pred             -----HHHHhCCCCCCCeEEEEe-C-C--eEEEEEeCCCcchhhHHHHHHHHH
Q 029703          143 -----DLVKRGNISKMPTIQIWK-D-G--EMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       143 -----~l~~~~~i~~~Pt~~~~~-~-G--~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                           ..++.++...+|.+.++- . +  .++.++.|..+++++.+.|...++
T Consensus        82 g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve  134 (136)
T cd02990          82 GSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME  134 (136)
T ss_pred             hHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence                 246668899999999983 2 2  577899999999777777777665

FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.0025  Score=55.81  Aligned_cols=79  Identities=18%  Similarity=0.195  Sum_probs=59.3

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEEccCChHHHHHhC--------CCC
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSKDLVKRG--------NIS  151 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~-l--~~~~~~~~~~v~~~~vd~~~~~~~l~~~~--------~i~  151 (189)
                      ++.|.+.-    ..+||++|....+||..|..|... +  .++++-++..+.-++||-++-|+ +-+.|        |-.
T Consensus        33 ~eAf~~A~----~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPD-vD~~Ym~~~q~~tG~G  107 (667)
T COG1331          33 EEAFAKAK----EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPD-VDSLYMNASQAITGQG  107 (667)
T ss_pred             HHHHHHHH----HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccC-HHHHHHHHHHHhccCC
Confidence            56677766    789999999999999999998632 2  34555555668888998888774 44444        356


Q ss_pred             CCCeEEEEe-CCeEEE
Q 029703          152 KMPTIQIWK-DGEMKS  166 (189)
Q Consensus       152 ~~Pt~~~~~-~G~~~~  166 (189)
                      ++|-.+|+. +|++..
T Consensus       108 GWPLtVfLTPd~kPFf  123 (667)
T COG1331         108 GWPLTVFLTPDGKPFF  123 (667)
T ss_pred             CCceeEEECCCCceee
Confidence            899888884 999875

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.93  E-value=0.013  Score=39.50  Aligned_cols=94  Identities=9%  Similarity=0.171  Sum_probs=65.2

Q ss_pred             eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      ..+.+.+++++++    ..++.++|-|+..--.   .....+.++|+.++.++.|+...-   . .+...+++  .|+++
T Consensus         3 ~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~-~~~~~~~~--~~~iv   69 (104)
T cd03069           3 VELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD---K-QLLEKYGY--GEGVV   69 (104)
T ss_pred             cccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh---H-HHHHhcCC--CCceE
Confidence            4567788899988    5677777777766444   456788888998877788855432   3 37788888  78888


Q ss_pred             EEeC------C-eEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          158 IWKD------G-EMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       158 ~~~~------G-~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +|+.      - .....|.|..+.    +.|.+||..+
T Consensus        70 l~~p~~~~~k~de~~~~y~g~~~~----~~l~~fi~~~  103 (104)
T cd03069          70 LFRPPRLSNKFEDSSVKFDGDLDS----SKIKKFIREN  103 (104)
T ss_pred             EEechhhhcccCcccccccCcCCH----HHHHHHHHhh
Confidence            8831      1 122347776555    8999999764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.033  Score=40.43  Aligned_cols=92  Identities=12%  Similarity=0.127  Sum_probs=62.3

Q ss_pred             cCCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------HHHHHhCCCCC
Q 029703           95 ELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------KDLVKRGNISK  152 (189)
Q Consensus        95 ~~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~~  152 (189)
                      -.++++|++|| ..+++.|-...-.+++...++. -++.++.|..|...                    ..+++.|||..
T Consensus        28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~  107 (157)
T COG1225          28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG  107 (157)
T ss_pred             hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence            45779999999 6788889888888888887773 35777777766532                    23788888743


Q ss_pred             ------------CCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          153 ------------MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       153 ------------~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                                  .++..++. +|++...+..... ..-.+++.+.|++
T Consensus       108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~-~~h~~~vl~~l~~  154 (157)
T COG1225         108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKV-KGHADEVLAALKK  154 (157)
T ss_pred             ccccCccccccccceEEEECCCCeEEEEecCCCC-cccHHHHHHHHHH
Confidence                        46667775 8998887744332 2233555555554

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=96.79  E-value=0.021  Score=42.30  Aligned_cols=27  Identities=30%  Similarity=0.550  Sum_probs=24.6

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHHh
Q 029703          100 ILIDWMASWCRKCIYLKPKLEKLAAEF  126 (189)
Q Consensus       100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~  126 (189)
                      .|.+|+..-||+|....+.+.++.+.+
T Consensus         1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~   27 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASPRLRKLRAEY   27 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence            367889999999999999999999998

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=96.77  E-value=0.014  Score=42.89  Aligned_cols=66  Identities=27%  Similarity=0.298  Sum_probs=52.7

Q ss_pred             hhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC-eEEEEEeCC-CcchhhHHHHHHHHHhh
Q 029703          114 YLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG-EMKSEVIGG-HKAWLVIEEVREMIKKF  188 (189)
Q Consensus       114 ~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G-~~~~~~~g~-~~~~~~~~~l~~~i~~~  188 (189)
                      .....+.++|+.+.+.+.|+.+.   .. ++++.+++.. |++++|+++ +....|.|. .+.    +.|.+||..+
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~---~~-~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~----~~l~~fI~~~   74 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTF---NE-ELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTP----EELKKFIKKN   74 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE----H-HHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEc---HH-HHHHHhCCCC-CcEEEeccCCCCceecccccCCH----HHHHHHHHHh
Confidence            45678899999998789999887   34 4899999999 999999863 445788887 556    8999999864

...

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=96.75  E-value=0.00036  Score=48.14  Aligned_cols=44  Identities=11%  Similarity=0.074  Sum_probs=32.9

Q ss_pred             hHHHHHHhhc----cccccCCccccC--CCccccceecCc---eEEEeCC-Ccc
Q 029703           10 ILYQELHRRE----GKQQFQQPWSSG--SSSCLLLQKNSA---FFWVDTA-SRS   53 (189)
Q Consensus        10 ~~~~~~~~~~----~~~~~~~~~~i~--g~Ptl~~~~~~~---~~~~~g~-~~~   53 (189)
                      +++.++++.+    .-..+|+.|+|+  |||||++|++|.   +..|.|. +..
T Consensus        52 v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~  105 (116)
T cd03007          52 LLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTV  105 (116)
T ss_pred             eEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccH
Confidence            6667777731    226699999999  999999999884   3678775 443

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=96.61  E-value=0.002  Score=51.18  Aligned_cols=139  Identities=13%  Similarity=0.188  Sum_probs=73.2

Q ss_pred             cCCccccCCCccccceecCce--EEEeCCCccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCCCcEE
Q 029703           24 FQQPWSSGSSSCLLLQKNSAF--FWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPIL  101 (189)
Q Consensus        24 ~~~~~~i~g~Ptl~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~~v  101 (189)
                      .-+.|.|+.|||+++|++|..  ..|.|.|..+.....  ++.   ..+.|    +.+..+.++++....   .+++.++
T Consensus        64 ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~ef--i~k---q~s~~----i~Ef~sl~~l~n~~~---p~K~~vI  131 (375)
T KOG0912|consen   64 IADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEF--IEK---QLSDP----INEFESLDQLQNLDI---PSKRTVI  131 (375)
T ss_pred             HhhhhccccCceeeeeeccchhhhhhccchhHHHHHHH--HHH---HhccH----HHHHHhHHHHHhhhc---cccceEE
Confidence            447899999999999999977  467776544321110  010   11111    333344556666551   2556666


Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEE--EEeCCCcchhhHH
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKS--EVIGGHKAWLVIE  179 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~--~~~g~~~~~~~~~  179 (189)
                      .+|-+..-+.    ...+.+++.-+..+..|..- ..+.    .....-.+.+ +++|+.+....  .|.|..+.   -+
T Consensus       132 gyF~~kdspe----y~~~~kva~~lr~dc~f~V~-~gD~----~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~n---f~  198 (375)
T KOG0912|consen  132 GYFPSKDSPE----YDNLRKVASLLRDDCVFLVG-FGDL----LKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTN---FD  198 (375)
T ss_pred             EEeccCCCch----HHHHHHHHHHHhhccEEEee-cccc----ccCCCCCCCc-eEEeCCCcCCcCccccccccc---HH
Confidence            6776555443    34566677767666554432 1111    1111112222 44444332222  47886542   27


Q ss_pred             HHHHHHHh
Q 029703          180 EVREMIKK  187 (189)
Q Consensus       180 ~l~~~i~~  187 (189)
                      .|.+||++
T Consensus       199 el~~Wi~d  206 (375)
T KOG0912|consen  199 ELKQWIQD  206 (375)
T ss_pred             HHHHHHHh
Confidence            88888875

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=96.38  E-value=0.017  Score=48.63  Aligned_cols=57  Identities=14%  Similarity=0.226  Sum_probs=40.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH--HHHHh---------CCCCCCCeEEEEeCCeEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK--DLVKR---------GNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~--~l~~~---------~~i~~~Pt~~~~~~G~~~  165 (189)
                      |+.|..+|||+|++....|.+.      ++.+-.+|+++.+.  ++.++         .|...+|++++  +|+.+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i   71 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI   71 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence            6678999999999987777652      57777888886653  12122         46789999855  77644

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.37  E-value=0.0013  Score=45.73  Aligned_cols=32  Identities=6%  Similarity=0.062  Sum_probs=26.9

Q ss_pred             cccCCccccCCCccccceecCceEEEeCCCcc
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAFFWVDTASRS   53 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~~g~~~~   53 (189)
                      ..+++.|+|+|+|||++|++|....|.|.+..
T Consensus        77 ~~La~~~~I~~iPTl~lfk~G~~v~~~G~~~~  108 (120)
T cd03065          77 AKVAKKLGLDEEDSIYVFKDDEVIEYDGEFAA  108 (120)
T ss_pred             HHHHHHcCCccccEEEEEECCEEEEeeCCCCH
Confidence            56789999999999999999987668776533

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=96.33  E-value=0.0039  Score=53.48  Aligned_cols=156  Identities=12%  Similarity=0.154  Sum_probs=78.7

Q ss_pred             HHHHh-hccccccCCccccCCCccccceecCce-----EEEeCCCcc----ccccccceeee------ecCCCCCCCccc
Q 029703           13 QELHR-REGKQQFQQPWSSGSSSCLLLQKNSAF-----FWVDTASRS----KSARRDVRVEA------LWPDLSRPTSVE   76 (189)
Q Consensus        13 ~~~~~-~~~~~~~~~~~~i~g~Ptl~~~~~~~~-----~~~~g~~~~----~~~~~~~~~~~------~~~~~~~~~~~~   76 (189)
                      ..++| .+.-+.+|.+++|++||||++|..+.-     ..+.|....    +...+.+..+.      .||...+     
T Consensus        96 aaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~p-----  170 (606)
T KOG1731|consen   96 AAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDP-----  170 (606)
T ss_pred             EEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCC-----
Confidence            44667 555699999999999999999986532     233331111    01111111111      2222221     


Q ss_pred             eeecCChhHHHHHHHHhhcCCCcEEEEE-ecCCChhhhhhhHHHHHHHHHhC-CCeEEEEE-EccCChHHHHHhCCCCCC
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDW-MASWCRKCIYLKPKLEKLAAEFD-TKLKFYYV-DVNKVSKDLVKRGNISKM  153 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f-~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v-d~~~~~~~l~~~~~i~~~  153 (189)
                      +...++..++.+.+.   .....+-|-| -.+.       .--++.+...+. +++.+..+ |....+  +.+ +++...
T Consensus       171 l~~~~~~~~l~~~~~---~~~~yvAiv~e~~~s-------~lg~~~~l~~l~~~~v~vr~~~d~q~~~--~~~-l~~~~~  237 (606)
T KOG1731|consen  171 LKDTTTLEELDEGIS---TTANYVAIVFETEPS-------DLGWANLLNDLPSKQVGVRARLDTQNFP--LFG-LKPDNF  237 (606)
T ss_pred             CCCcchHHHHhcccc---cccceeEEEEecCCc-------ccHHHHHHhhccCCCcceEEEecchhcc--ccc-cCCCCc
Confidence            122222333333331   1222333333 2332       113444444442 33333333 333333  456 899999


Q ss_pred             CeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          154 PTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       154 Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      |+.+++++|+...-.....+.+...++|.++|.
T Consensus       238 ~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg  270 (606)
T KOG1731|consen  238 PLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLG  270 (606)
T ss_pred             hhhhhhcCCcccccccccccHHHHHHHHHHHhc
Confidence            999999999875544444555455566666653

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=0.059  Score=41.76  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=27.1

Q ss_pred             HHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703          144 LVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       144 l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      ++..+||.++||+++  +|+   .+.|..+.    ++|.+.|..
T Consensus       207 ~a~~~gv~gTPt~~v--~~~---~~~g~~~~----~~l~~~i~~  241 (244)
T COG1651         207 LAQQLGVNGTPTFIV--NGK---LVPGLPDL----DELKAIIDE  241 (244)
T ss_pred             HHHhcCCCcCCeEEE--CCe---eecCCCCH----HHHHHHHHH
Confidence            788899999999887  454   56787776    777777765

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=96.05  E-value=0.23  Score=32.85  Aligned_cols=86  Identities=19%  Similarity=0.179  Sum_probs=56.3

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG  162 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G  162 (189)
                      .+++...+..  -.+...++.|..+. ..|..+...++++++-- +++.+-..+...            ..|++.+..+|
T Consensus         7 ~~qL~~~f~~--l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~------------~~P~~~i~~~~   70 (94)
T cd02974           7 KQQLKAYLER--LENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE------------RKPSFSINRPG   70 (94)
T ss_pred             HHHHHHHHHh--CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC------------CCCEEEEecCC
Confidence            3455666631  23444455565554 88999988888887754 666664333211            47999998776


Q ss_pred             eEE-EEEeCCCcchhhHHHHHHHHHhh
Q 029703          163 EMK-SEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       163 ~~~-~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +.. -+|.|....    .++..||...
T Consensus        71 ~~~gIrF~GiP~G----hEf~Slilai   93 (94)
T cd02974          71 EDTGIRFAGIPMG----HEFTSLVLAL   93 (94)
T ss_pred             CcccEEEEecCCc----hhHHHHHHHh
Confidence            432 488998887    7888887654

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=95.54  E-value=0.092  Score=37.78  Aligned_cols=51  Identities=24%  Similarity=0.334  Sum_probs=36.2

Q ss_pred             CChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCC----CCCCeEEEEeCCeEEE
Q 029703          108 WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNI----SKMPTIQIWKDGEMKS  166 (189)
Q Consensus       108 wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i----~~~Pt~~~~~~G~~~~  166 (189)
                      +|++|+.+...|+..      .+.+-.+|++..++   ++.+.++-    ..+|.+.+  +|+.+.
T Consensus        15 t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG   72 (147)
T cd03031          15 TFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG   72 (147)
T ss_pred             cChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence            899999988887653      47788889877642   35555554    68888554  786543

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=95.40  E-value=0.5  Score=31.95  Aligned_cols=96  Identities=11%  Similarity=0.129  Sum_probs=61.2

Q ss_pred             eecCChhHHHHHHHHhhcCC-CcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703           78 EPINDSDHLDQILLRAQELS-QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~~~-k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      ..+.+.++++.++    ... +.++|-|+..--+   .....+.++|+.+.+++.|+...-   . .+...+++. .|.+
T Consensus         3 ~~i~s~~ele~f~----~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~-~~~~~~~~~-~~~v   70 (107)
T cd03068           3 KQLQTLKQVQEFL----RDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---S-EIFKSLKVS-PGQL   70 (107)
T ss_pred             eEcCCHHHHHHHH----hcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---H-HHHHhcCCC-CCce
Confidence            4577888999988    444 6666666655433   356678889999877888855432   3 367788875 5677


Q ss_pred             EEEeCC-------eEEEEEeCC-CcchhhHHHHHHHHHhh
Q 029703          157 QIWKDG-------EMKSEVIGG-HKAWLVIEEVREMIKKF  188 (189)
Q Consensus       157 ~~~~~G-------~~~~~~~g~-~~~~~~~~~l~~~i~~~  188 (189)
                      ++|+.-       .....|.|. ...   .+.|..||+.+
T Consensus        71 vl~rp~~~~~k~e~~~~~~~~~~~~~---~~~~~~f~~~~  107 (107)
T cd03068          71 VVFQPEKFQSKYEPKSHVLNKKDSTS---EDELKDFFKEH  107 (107)
T ss_pred             EEECcHHHhhhcCcceeeeeccccch---HHHHHHHHhcC
Confidence            777221       122355655 333   14499998764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=95.05  E-value=0.0095  Score=40.89  Aligned_cols=31  Identities=10%  Similarity=-0.253  Sum_probs=24.4

Q ss_pred             ccC-CccccCCCccccceecCce-EEEeCCCcc
Q 029703           23 QFQ-QPWSSGSSSCLLLQKNSAF-FWVDTASRS   53 (189)
Q Consensus        23 ~~~-~~~~i~g~Ptl~~~~~~~~-~~~~g~~~~   53 (189)
                      ..| ..|+|.+|||+++|++|.. ..|.|.+..
T Consensus        74 ~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~~~  106 (113)
T cd03006          74 GKCRKQKHFFYFPVIHLYYRSRGPIEYKGPMRA  106 (113)
T ss_pred             HHHHHhcCCcccCEEEEEECCccceEEeCCCCH
Confidence            468 5899999999999998764 667776544

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=94.84  E-value=0.18  Score=31.10  Aligned_cols=58  Identities=10%  Similarity=0.229  Sum_probs=38.4

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM  164 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~  164 (189)
                      +.|+.+||+.|++..-.+.+.    +-.+.+..+|....+.++.+......+|++.. .+|..
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~----gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~   59 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLA----GITVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV   59 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHc----CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence            357789999999876666543    22456666666544434666677889999853 34654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=94.67  E-value=0.012  Score=39.63  Aligned_cols=41  Identities=7%  Similarity=0.104  Sum_probs=28.0

Q ss_pred             hHHHHHHhhccccccCCccccCCCccccceecCce--EEEeCCC
Q 029703           10 ILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAF--FWVDTAS   51 (189)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~i~g~Ptl~~~~~~~~--~~~~g~~   51 (189)
                      +.+..+++... ...|+.|+|++|||+.+|++|..  ..|.|.+
T Consensus        57 ~~~~~vd~d~~-~~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~   99 (108)
T cd02996          57 VVWGKVDCDKE-SDIADRYRINKYPTLKLFRNGMMMKREYRGQR   99 (108)
T ss_pred             EEEEEEECCCC-HHHHHhCCCCcCCEEEEEeCCcCcceecCCCC
Confidence            33344444222 45789999999999999999873  5555543

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=94.65  E-value=0.43  Score=39.87  Aligned_cols=98  Identities=8%  Similarity=0.073  Sum_probs=60.2

Q ss_pred             HHHHHHHHhhcCCCcEEEEEecCCChhhhhhh-HHH-HHHH-HHhCCCeEEEEEEccCCh-HHHHHhCCCCCCCeEEEEe
Q 029703           85 HLDQILLRAQELSQPILIDWMASWCRKCIYLK-PKL-EKLA-AEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~-~~l-~~~~-~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~~~~  160 (189)
                      ++-..+..+ +.++.++|.|-+.......+|. -.| .... +.+...+..++|+..... ..++.-|.+..+|++.++.
T Consensus         7 nipeAIa~a-K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg   85 (506)
T KOG2507|consen    7 NIPEAIAEA-KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIG   85 (506)
T ss_pred             chHHHHHHh-hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeec
Confidence            444566666 4556666666666555555555 122 2222 222234455555543321 1378889999999999994


Q ss_pred             -CCeEEEEEeCCCcchhhHHHHHH
Q 029703          161 -DGEMKSEVIGGHKAWLVIEEVRE  183 (189)
Q Consensus       161 -~G~~~~~~~g~~~~~~~~~~l~~  183 (189)
                       .|..+....|....++|...|.+
T Consensus        86 ~sGtpLevitg~v~adeL~~~i~K  109 (506)
T KOG2507|consen   86 FSGTPLEVITGFVTADELASSIEK  109 (506)
T ss_pred             CCCceeEEeeccccHHHHHHHHHH
Confidence             99999999999998444444443

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=94.58  E-value=0.16  Score=36.67  Aligned_cols=75  Identities=17%  Similarity=0.183  Sum_probs=47.6

Q ss_pred             CCcEEEEE-ecCCChhhhhh-hHHHHHHHHHhC-CCe-EEEEEEccCCh----------------------HHHHHhCCC
Q 029703           97 SQPILIDW-MASWCRKCIYL-KPKLEKLAAEFD-TKL-KFYYVDVNKVS----------------------KDLVKRGNI  150 (189)
Q Consensus        97 ~k~~vv~f-~a~wC~~C~~~-~~~l~~~~~~~~-~~v-~~~~vd~~~~~----------------------~~l~~~~~i  150 (189)
                      +++++|.| .+.||+.|... .+.|.+..+++. ..+ .++.+..+...                      ..+++.||+
T Consensus        29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv  108 (155)
T cd03013          29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGL  108 (155)
T ss_pred             CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCC
Confidence            45555555 58999999998 889988888873 344 46666554321                      236777776


Q ss_pred             C------C-----CCeEEEEeCCeEEEEEeCC
Q 029703          151 S------K-----MPTIQIWKDGEMKSEVIGG  171 (189)
Q Consensus       151 ~------~-----~Pt~~~~~~G~~~~~~~g~  171 (189)
                      .      +     ..+.+++++|++...+...
T Consensus       109 ~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~  140 (155)
T cd03013         109 TLDLSAAGGGIRSKRYALIVDDGKVKYLFVEE  140 (155)
T ss_pred             CccccccCCcceeeeEEEEECCCEEEEEEEec
Confidence            3      1     2344555677776655443

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=94.20  E-value=0.018  Score=45.93  Aligned_cols=84  Identities=12%  Similarity=0.294  Sum_probs=60.4

Q ss_pred             CCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEE-ccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcch
Q 029703           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD-VNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAW  175 (189)
Q Consensus        97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd-~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~  175 (189)
                      ..++=+.||+.||+..+..+|.+.-....+ ..+....++ ....+ .+..+|++.+.|++++. +-.-..++.|.+.. 
T Consensus        76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~-~~i~h~~vee~~~lp-sv~s~~~~~~~ps~~~~-n~t~~~~~~~~r~l-  151 (319)
T KOG2640|consen   76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLF-SSIQHFAVEESQALP-SVFSSYGIHSEPSNLML-NQTCPASYRGERDL-  151 (319)
T ss_pred             CCcccccchhcccCcccccCcccchhhhhc-cccccccHHHHhhcc-cchhccccccCCcceee-ccccchhhcccccH-
Confidence            567889999999999999999998877776 344444433 22234 37899999999999887 44445677888776 


Q ss_pred             hhHHHHHHHHHh
Q 029703          176 LVIEEVREMIKK  187 (189)
Q Consensus       176 ~~~~~l~~~i~~  187 (189)
                         ..|..|..+
T Consensus       152 ---~sLv~fy~~  160 (319)
T KOG2640|consen  152 ---ASLVNFYTE  160 (319)
T ss_pred             ---HHHHHHHHh
Confidence               555555443

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=94.13  E-value=0.013  Score=38.88  Aligned_cols=29  Identities=7%  Similarity=-0.143  Sum_probs=22.7

Q ss_pred             cccCCccccCCCccccceecCce-EEEeCC
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDTA   50 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~g~   50 (189)
                      ..+|+.|+|++|||+.+|++|.. ..|.|.
T Consensus        62 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~   91 (101)
T cd03003          62 RMLCRSQGVNSYPSLYVFPSGMNPEKYYGD   91 (101)
T ss_pred             HHHHHHcCCCccCEEEEEcCCCCcccCCCC
Confidence            56789999999999999998754 444443

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=94.12  E-value=0.6  Score=40.47  Aligned_cols=85  Identities=22%  Similarity=0.210  Sum_probs=57.5

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG  162 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G  162 (189)
                      .+++..++.   .=.+++-+.++.+.|..|..+...++++++.- +++.+-..+..            ...|++.+..+|
T Consensus         7 ~~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~------------~~~p~~~~~~~~   70 (517)
T PRK15317          7 KTQLKQYLE---LLERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD------------VRKPSFSITRPG   70 (517)
T ss_pred             HHHHHHHHH---hCCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC------------CCCCEEEEEcCC
Confidence            345666663   33566655555558999999999999987764 77766442211            347999998877


Q ss_pred             eEE-EEEeCCCcchhhHHHHHHHHHh
Q 029703          163 EMK-SEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       163 ~~~-~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      +.. -+|.|....    .++..||..
T Consensus        71 ~~~~i~f~g~P~g----~Ef~s~i~~   92 (517)
T PRK15317         71 EDTGVRFAGIPMG----HEFTSLVLA   92 (517)
T ss_pred             ccceEEEEecCcc----HHHHHHHHH
Confidence            554 488998887    666666654

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=94.00  E-value=0.26  Score=30.86  Aligned_cols=57  Identities=21%  Similarity=0.246  Sum_probs=44.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHhCCCCCCCeEEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQI  158 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~  158 (189)
                      +..|-+..-+-.+.....+.++-+++ ++.+.+-.||+.++++ ++..++|-.+||++=
T Consensus         4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~-lAe~~~ivAtPtLvk   61 (72)
T cd02978           4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQ-LAEEDKIVATPTLVK   61 (72)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh-HHhhCCEEEechhhh
Confidence            44454555577777777777777765 6789999999999996 999999999999764

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=93.92  E-value=1.5  Score=30.71  Aligned_cols=108  Identities=17%  Similarity=0.259  Sum_probs=55.9

Q ss_pred             ceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhh--hhhHHHHHHHHHhCCCeEEEEEEccCChHH--HHHhCC--
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCI--YLKPKLEKLAAEFDTKLKFYYVDVNKVSKD--LVKRGN--  149 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~--~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~--l~~~~~--  149 (189)
                      .+.++.|.++.++.+..   .++..+|. -.+-|| |.  ..+|-.......-+.--.++.|=.....+.  -++.|=  
T Consensus        17 Gf~eL~T~e~Vd~~~~~---~~GTtlVv-VNSVCG-CAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~   91 (136)
T PF06491_consen   17 GFEELTTAEEVDEALKN---KEGTTLVV-VNSVCG-CAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEP   91 (136)
T ss_dssp             T-EE--SHHHHHHHHHH-----SEEEEE-EE-SSH-HHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTT
T ss_pred             CccccCCHHHHHHHHhC---CCCcEEEE-Eecccc-ccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCC
Confidence            46678899999999941   44444443 377787 64  345655544433211223344433333221  233432  


Q ss_pred             -CCCCCeEEEEeCCeEEEEEeC----CCcchhhHHHHHHHHHhh
Q 029703          150 -ISKMPTIQIWKDGEMKSEVIG----GHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       150 -i~~~Pt~~~~~~G~~~~~~~g----~~~~~~~~~~l~~~i~~~  188 (189)
                       -.+-|++.+|++|+++.-+.-    .++...+.++|.+.++++
T Consensus        92 ~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~~~  135 (136)
T PF06491_consen   92 YPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAFDEY  135 (136)
T ss_dssp             S---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHHhh
Confidence             247899999999999874432    245556667777666654

; PDB: 3FHK_F.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=93.60  E-value=0.027  Score=37.56  Aligned_cols=31  Identities=10%  Similarity=0.088  Sum_probs=24.9

Q ss_pred             ccccCCccccCCCccccceecCceEEEeCCC
Q 029703           21 KQQFQQPWSSGSSSCLLLQKNSAFFWVDTAS   51 (189)
Q Consensus        21 ~~~~~~~~~i~g~Ptl~~~~~~~~~~~~g~~   51 (189)
                      ....++.|+|.++||+.+|++|....|.|.+
T Consensus        61 ~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~   91 (100)
T cd02999          61 KPSLLSRYGVVGFPTILLFNSTPRVRYNGTR   91 (100)
T ss_pred             CHHHHHhcCCeecCEEEEEcCCceeEecCCC
Confidence            3557789999999999999988556676654

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=93.40  E-value=0.97  Score=39.17  Aligned_cols=86  Identities=19%  Similarity=0.220  Sum_probs=57.3

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG  162 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G  162 (189)
                      .+++...+.   .=.+++-+.++.+.|..|..+...++++++.- +++.+..-+.+           ....|++.+..+|
T Consensus         7 ~~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~-----------~~~~p~~~~~~~~   71 (515)
T TIGR03140         7 LAQLKSYLA---SLENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTAD-----------TLRKPSFTILRDG   71 (515)
T ss_pred             HHHHHHHHH---hcCCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCC-----------cCCCCeEEEecCC
Confidence            346666663   23555655555447999999999998887754 77777443322           1356999998777


Q ss_pred             eEE-EEEeCCCcchhhHHHHHHHHHh
Q 029703          163 EMK-SEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       163 ~~~-~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      +.. -+|.|....    .++..||..
T Consensus        72 ~~~~i~f~g~P~g----~Ef~s~i~~   93 (515)
T TIGR03140        72 ADTGIRFAGIPGG----HEFTSLVLA   93 (515)
T ss_pred             cccceEEEecCCc----HHHHHHHHH
Confidence            643 488998887    666666654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=93.17  E-value=0.045  Score=36.19  Aligned_cols=29  Identities=7%  Similarity=0.054  Sum_probs=23.4

Q ss_pred             cccCCccccCCCccccceecCceEEEeCC
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAFFWVDTA   50 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~~g~   50 (189)
                      ...|+.|+|.++||+.++++|....|.|.
T Consensus        61 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~G~   89 (101)
T cd02994          61 PGLSGRFFVTALPTIYHAKDGVFRRYQGP   89 (101)
T ss_pred             HhHHHHcCCcccCEEEEeCCCCEEEecCC
Confidence            34678999999999999988876556554

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=93.06  E-value=0.82  Score=37.41  Aligned_cols=139  Identities=18%  Similarity=0.191  Sum_probs=80.7

Q ss_pred             CccccCCCccccceecCceEEEeCCCccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCCCcEEEEEe
Q 029703           26 QPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM  105 (189)
Q Consensus        26 ~~~~i~g~Ptl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~  105 (189)
                      +.+|+...++|-+|+.|....|+|.+....     .++....-+..|    +..|++..+++.+-.   -...+-||-|+
T Consensus       106 KKLgv~E~~SiyVfkd~~~IEydG~~saDt-----LVeFl~dl~edP----VeiIn~~~e~~~Fe~---ied~~klIGyF  173 (383)
T PF01216_consen  106 KKLGVEEEGSIYVFKDGEVIEYDGERSADT-----LVEFLLDLLEDP----VEIINNKHELKAFER---IEDDIKLIGYF  173 (383)
T ss_dssp             HHHT--STTEEEEEETTEEEEE-S--SHHH-----HHHHHHHHHSSS----EEEE-SHHHHHHHHH-----SS-EEEEE-
T ss_pred             HhcCccccCcEEEEECCcEEEecCccCHHH-----HHHHHHHhcccc----hhhhcChhhhhhhhh---cccceeEEEEe
Confidence            566888899999999999999999865522     122222222333    445677777766653   24456667666


Q ss_pred             cCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe--CCeEEEEEeCCCcchhhHHHHHH
Q 029703          106 ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK--DGEMKSEVIGGHKAWLVIEEVRE  183 (189)
Q Consensus       106 a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~--~G~~~~~~~g~~~~~~~~~~l~~  183 (189)
                      .+.-+.   -...++++|+.+.+-+.|+.+   -.+ .+|++++.. .=.+-+|.  -.+++.--....+.    ++|.+
T Consensus       174 k~~~s~---~yk~FeeAAe~F~p~IkFfAt---fd~-~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e----~e~~~  241 (383)
T PF01216_consen  174 KSEDSE---HYKEFEEAAEHFQPYIKFFAT---FDK-KVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTE----EELVE  241 (383)
T ss_dssp             SSTTSH---HHHHHHHHHHHCTTTSEEEEE----SH-HHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--H----HHHHH
T ss_pred             CCCCcH---HHHHHHHHHHhhcCceeEEEE---ecc-hhhhhcCcc-ccceeeeccccCCCccCCCCCCCH----HHHHH
Confidence            664332   345778889999888988764   234 389999986 66777775  34444332223344    89999


Q ss_pred             HHHhh
Q 029703          184 MIKKF  188 (189)
Q Consensus       184 ~i~~~  188 (189)
                      ||+++
T Consensus       242 fi~~h  246 (383)
T PF01216_consen  242 FIEEH  246 (383)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            99875

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=93.00  E-value=1.2  Score=31.36  Aligned_cols=83  Identities=22%  Similarity=0.233  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG  162 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G  162 (189)
                      .+.+++++..+.+-+-++++.=.-..  .-+.....+.++..+- +.     .++.-+|. +-++|+|+.+|++++.+++
T Consensus        11 ~~~Lk~l~~~a~~~g~~~VlRG~~~~--~~~~T~~~i~~L~~~~-~~-----~~v~IdP~-lF~~f~I~~VPa~V~~~~~   81 (130)
T TIGR02742        11 EPLLKQLLDQAEALGAPLVIRGLLDN--GFKATATRIQSLIKDG-GK-----SGVQIDPQ-WFKQFDITAVPAFVVVKDG   81 (130)
T ss_pred             HHHHHHHHHHHHHhCCeEEEeCCCCC--CHHHHHHHHHHHHhcC-CC-----CcEEEChH-HHhhcCceEcCEEEEECCC
Confidence            56788888766455555555444433  1123333333333322 11     22223464 8999999999999999876


Q ss_pred             e-----------EEEEEeCCCcc
Q 029703          163 E-----------MKSEVIGGHKA  174 (189)
Q Consensus       163 ~-----------~~~~~~g~~~~  174 (189)
                      .           ...+..|..+.
T Consensus        82 ~~c~~~~~~~~~~~d~v~Gdvsl  104 (130)
T TIGR02742        82 LACLPEQPCPESDYDVVYGNVSL  104 (130)
T ss_pred             CcccccCCCCCCCeeEEEecccH
Confidence            4           34577777765

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=92.93  E-value=1.2  Score=30.49  Aligned_cols=71  Identities=17%  Similarity=0.192  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeC
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKD  161 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~  161 (189)
                      .+.+++++..+...+-++++.=+-+.  .=+.....+.++..+-...     .++.-+|. +-++|+|+.+|++++-++
T Consensus        10 ~~~L~~l~~~a~~~~~~~V~RG~~~g--~~~~t~~~~~~l~~~~~~~-----~~v~IdP~-~F~~y~I~~VPa~V~~~~   80 (113)
T PF09673_consen   10 DASLRNLLKQAERAGVVVVFRGFPDG--SFKPTAKAIQELLRKDDPC-----PGVQIDPR-LFRQYNITAVPAFVVVKD   80 (113)
T ss_pred             HHHHHHHHHHHHhCCcEEEEECCCCC--CHHHHHHHHHHHhhccCCC-----cceeEChh-HHhhCCceEcCEEEEEcC
Confidence            56788888766344333333333333  2223333344444333211     22233464 899999999999999877

The N-terminal portion of these proteins is heterogeneous.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=92.84  E-value=0.038  Score=36.77  Aligned_cols=30  Identities=7%  Similarity=-0.088  Sum_probs=23.2

Q ss_pred             cccCCccccCCCccccceecC-ce-EEEeCCC
Q 029703           22 QQFQQPWSSGSSSCLLLQKNS-AF-FWVDTAS   51 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~-~~-~~~~g~~   51 (189)
                      ...|+.|+|+++||+.+|++| .. ..|.|..
T Consensus        63 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~   94 (104)
T cd03004          63 ESLCQQANIRAYPTIRLYPGNASKYHSYNGWH   94 (104)
T ss_pred             HHHHHHcCCCcccEEEEEcCCCCCceEccCCC
Confidence            457889999999999999987 33 5565543

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=92.55  E-value=1.9  Score=30.63  Aligned_cols=74  Identities=16%  Similarity=0.246  Sum_probs=50.3

Q ss_pred             CcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCC----CCCeEEEEeCCeEEEEEeCCCc
Q 029703           98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----KMPTIQIWKDGEMKSEVIGGHK  173 (189)
Q Consensus        98 k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~----~~Pt~~~~~~G~~~~~~~g~~~  173 (189)
                      ..-++.+++|.|+=|......++.      ..+.+-.+..++.. .+.++++|.    +-=|.++  +|..+   .|-..
T Consensus        25 ~~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~-alK~~~gIp~e~~SCHT~VI--~Gy~v---EGHVP   92 (149)
T COG3019          25 ATEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFL-ALKRRLGIPYEMQSCHTAVI--NGYYV---EGHVP   92 (149)
T ss_pred             eeeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHH-HHHHhcCCChhhccccEEEE--cCEEE---eccCC
Confidence            345677899999999987766652      35666666666655 488888875    5555554  88765   56666


Q ss_pred             chhhHHHHHHHHHh
Q 029703          174 AWLVIEEVREMIKK  187 (189)
Q Consensus       174 ~~~~~~~l~~~i~~  187 (189)
                      .    +.+..++++
T Consensus        93 a----~aI~~ll~~  102 (149)
T COG3019          93 A----EAIARLLAE  102 (149)
T ss_pred             H----HHHHHHHhC
Confidence            6    667776653

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=92.49  E-value=0.11  Score=34.96  Aligned_cols=79  Identities=16%  Similarity=0.162  Sum_probs=41.5

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCCCCCCCeEEEEe-CCeEEEEEeCCC-cchh
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISKMPTIQIWK-DGEMKSEVIGGH-KAWL  176 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~~~~-~G~~~~~~~g~~-~~~~  176 (189)
                      ..|+.++|+.|++....|++      .++.+-.+|+.+.+   .++....+-.+.+.--+++ .|...... |.. ....
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l-~~~~~~~l   74 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEE------HGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKL-GLADKDEL   74 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHH------cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHc-CCccccCC
Confidence            46889999999998766654      24566677765532   2344444444443333443 44332221 111 1122


Q ss_pred             hHHHHHHHHHh
Q 029703          177 VIEEVREMIKK  187 (189)
Q Consensus       177 ~~~~l~~~i~~  187 (189)
                      ..+++.++|.+
T Consensus        75 s~~e~~~~l~~   85 (105)
T cd02977          75 SDEEALELMAE   85 (105)
T ss_pred             CHHHHHHHHHh
Confidence            23666666654

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=92.27  E-value=0.045  Score=36.59  Aligned_cols=23  Identities=4%  Similarity=0.046  Sum_probs=20.1

Q ss_pred             ccccCCccccCCCccccceecCc
Q 029703           21 KQQFQQPWSSGSSSCLLLQKNSA   43 (189)
Q Consensus        21 ~~~~~~~~~i~g~Ptl~~~~~~~   43 (189)
                      ....|+.|+|+++||+.+|++|+
T Consensus        63 ~~~~~~~~~i~~~Pt~~~~~~~~   85 (109)
T cd03002          63 NKPLCGKYGVQGFPTLKVFRPPK   85 (109)
T ss_pred             cHHHHHHcCCCcCCEEEEEeCCC
Confidence            45678899999999999999885

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=92.23  E-value=0.053  Score=35.76  Aligned_cols=30  Identities=7%  Similarity=-0.057  Sum_probs=23.2

Q ss_pred             cccCCccccCCCccccceecC--ceEEEeCCC
Q 029703           22 QQFQQPWSSGSSSCLLLQKNS--AFFWVDTAS   51 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~--~~~~~~g~~   51 (189)
                      ...|+.|+|+++||+.++++|  ....|.|..
T Consensus        62 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~   93 (103)
T cd03001          62 QSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGR   93 (103)
T ss_pred             HHHHHHCCCCccCEEEEECCCCcceeecCCCC
Confidence            457789999999999999987  335566553

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=92.06  E-value=0.61  Score=30.36  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=54.5

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703          100 ILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA  174 (189)
Q Consensus       100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~  174 (189)
                      ++=.|.+..-+-++.....+.++-+++ .+.+.+-.||+.++++ ++..++|-++||++=.. =.+..++.|..+.
T Consensus         5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~-lAE~~~IvATPtLIK~~-P~P~rriiGdls~   78 (87)
T TIGR02654         5 VLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQ-LAEEDKILATPTLSKIL-PPPVRKIIGDLSD   78 (87)
T ss_pred             EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCEEEecHHhhcC-CCCcceeeccccc
Confidence            444455666677777777777776654 5678888999999996 99999999999976443 3356788887653

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=92.00  E-value=4.3  Score=30.89  Aligned_cols=92  Identities=14%  Similarity=0.251  Sum_probs=57.5

Q ss_pred             cCCCcEEEEEecCCC-hhhhhhhHHHHHHHHHhC----CCeEEEE--EEccCCh--------------------------
Q 029703           95 ELSQPILIDWMASWC-RKCIYLKPKLEKLAAEFD----TKLKFYY--VDVNKVS--------------------------  141 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC-~~C~~~~~~l~~~~~~~~----~~v~~~~--vd~~~~~--------------------------  141 (189)
                      -.+++++|+|.=+.| .-|-.+...+..+.+++.    .++.++.  +|-+...                          
T Consensus        65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~  144 (207)
T COG1999          65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQI  144 (207)
T ss_pred             cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHH
Confidence            368999999965556 457777777777776663    3444444  4443321                          


Q ss_pred             HHHHHhCCCCC---------------CCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          142 KDLVKRGNISK---------------MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       142 ~~l~~~~~i~~---------------~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      +++++.|+|..               ...++++. +|+....+.+...++.+.+.|+..++
T Consensus       145 ~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~  205 (207)
T COG1999         145 EEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK  205 (207)
T ss_pred             HHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence            12566666552               23344554 89999998888888566666665554

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=91.98  E-value=0.069  Score=35.02  Aligned_cols=29  Identities=10%  Similarity=0.125  Sum_probs=24.3

Q ss_pred             cccCCccccCCCccccceecCce-EEEeCC
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDTA   50 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~g~   50 (189)
                      ..+|..|+|.++||+.++++|.. ..+.|.
T Consensus        61 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~   90 (103)
T PF00085_consen   61 KELCKKYGVKSVPTIIFFKNGKEVKRYNGP   90 (103)
T ss_dssp             HHHHHHTTCSSSSEEEEEETTEEEEEEESS
T ss_pred             chhhhccCCCCCCEEEEEECCcEEEEEECC
Confidence            56789999999999999999877 466665

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PRK09301 circadian clock protein KaiB; Provisional

Probab=91.63  E-value=0.69  Score=31.05  Aligned_cols=76  Identities=17%  Similarity=0.144  Sum_probs=57.1

Q ss_pred             CCcEEEEEecCCChhhhhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA  174 (189)
Q Consensus        97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~  174 (189)
                      +..++=.|.+..-+-.+.....+.++-+++ .+.+.+=.||+.++++ ++..++|-++||++=.. =.++.|+.|..+.
T Consensus         5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPe-lAE~~~IvATPTLIK~~-P~P~rriiGDlsd   81 (103)
T PRK09301          5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQ-LAEEDKILATPTLAKIL-PPPVRKIIGDLSD   81 (103)
T ss_pred             ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCeEEecHHhhcC-CCCcceeeccccc
Confidence            345555666777777777777777776654 5678888999999996 99999999999976433 3356788887653

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=91.47  E-value=0.15  Score=34.81  Aligned_cols=56  Identities=18%  Similarity=0.300  Sum_probs=34.9

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCCCCCCCeEEEEe-CCe
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISKMPTIQIWK-DGE  163 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~~~~-~G~  163 (189)
                      ..|+.++|+.|++....|++      .++.|-.+|+...+   .++..-++..+.|.--+++ .|.
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~   61 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDE------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGK   61 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHH------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCc
Confidence            45789999999998766654      25667777776543   1244434444556555554 443

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function

Probab=91.23  E-value=0.8  Score=35.85  Aligned_cols=58  Identities=17%  Similarity=0.135  Sum_probs=39.1

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~  160 (189)
                      ..+|+.+++..+.||+.|...+=.|-.+..++ +++.+.....+...       .-..+||++|..
T Consensus        56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf-Gn~~l~~~~S~~~d-------~~pn~Ptl~F~~  113 (249)
T PF06053_consen   56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRF-GNFSLEYHYSDPYD-------NYPNTPTLIFNN  113 (249)
T ss_pred             CCCeeEEEEEecccCccchhhHHHHHHHHHhc-CCeeeEEeecCccc-------CCCCCCeEEEec
Confidence            67999999999999999988765555555666 55633333222211       125789998864

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=91.20  E-value=0.1  Score=34.43  Aligned_cols=30  Identities=7%  Similarity=0.100  Sum_probs=23.2

Q ss_pred             ccccCCccccCCCccccceecCce-EEEeCC
Q 029703           21 KQQFQQPWSSGSSSCLLLQKNSAF-FWVDTA   50 (189)
Q Consensus        21 ~~~~~~~~~i~g~Ptl~~~~~~~~-~~~~g~   50 (189)
                      ....|..++|+++||+.++++|.. ..+.|.
T Consensus        64 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~   94 (104)
T cd02997          64 HDALKEEYNVKGFPTFKYFENGKFVEKYEGE   94 (104)
T ss_pred             cHHHHHhCCCccccEEEEEeCCCeeEEeCCC
Confidence            456778999999999999998864 444443

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=91.15  E-value=0.96  Score=27.61  Aligned_cols=52  Identities=13%  Similarity=0.106  Sum_probs=33.7

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      ..|+.++|+.|++..-.++...    -.+....+|......++.+......+|++.
T Consensus         2 ~ly~~~~~~~~~~v~~~l~~~g----i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~   53 (73)
T cd03059           2 TLYSGPDDVYSHRVRIVLAEKG----VSVEIIDVDPDNPPEDLAELNPYGTVPTLV   53 (73)
T ss_pred             EEEECCCChhHHHHHHHHHHcC----CccEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence            4577899999999876664432    234455556554443466666778999774

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=90.89  E-value=0.15  Score=33.50  Aligned_cols=30  Identities=13%  Similarity=0.061  Sum_probs=23.5

Q ss_pred             cccCCccccCCCccccceecCce-EEEeCCC
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDTAS   51 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~g~~   51 (189)
                      ...|+.|+|.++||+.++++|.. ..+.|..
T Consensus        63 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~   93 (102)
T cd03005          63 RELCSEFQVRGYPTLLLFKDGEKVDKYKGTR   93 (102)
T ss_pred             hhhHhhcCCCcCCEEEEEeCCCeeeEeeCCC
Confidence            35788999999999999998865 4465553

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=90.88  E-value=0.47  Score=28.94  Aligned_cols=57  Identities=12%  Similarity=0.197  Sum_probs=35.8

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHhCCCCCCCeEEEEeCCe
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSKDLVKRGNISKMPTIQIWKDGE  163 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~---~~~~l~~~~~i~~~Pt~~~~~~G~  163 (189)
                      ..|+.++|+.|++..-.+....    -.+....++...   ...++.+......+|++.. .+|.
T Consensus         2 ~Ly~~~~s~~~~~~~~~L~~~~----l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~   61 (74)
T cd03051           2 KLYDSPTAPNPRRVRIFLAEKG----IDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGT   61 (74)
T ss_pred             EEEeCCCCcchHHHHHHHHHcC----CCceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCC
Confidence            3577889999999887776542    234445555422   2223666667789999864 3453

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=90.83  E-value=3.7  Score=30.17  Aligned_cols=44  Identities=16%  Similarity=0.372  Sum_probs=31.8

Q ss_pred             CCCcEEEEEecCCC-hhhhhhhHHHHHHHHHh---CCCeEEEEEEccC
Q 029703           96 LSQPILIDWMASWC-RKCIYLKPKLEKLAAEF---DTKLKFYYVDVNK  139 (189)
Q Consensus        96 ~~k~~vv~f~a~wC-~~C~~~~~~l~~~~~~~---~~~v~~~~vd~~~  139 (189)
                      .+|+++|.|.=..| ..|-.+...+.++.+.+   +.++.++.|.+|-
T Consensus        51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP   98 (174)
T PF02630_consen   51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP   98 (174)
T ss_dssp             TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred             CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence            68999999977777 66877777777776665   2467777777764

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.81  E-value=0.82  Score=28.81  Aligned_cols=57  Identities=21%  Similarity=0.417  Sum_probs=37.1

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---------------HHHHhCCCCCCCeEEEEeCCeEE
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---------------DLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---------------~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      +.|+|..||.|..+...++.+      ++.+-.|++.....               +-.+..|--++|.+++ .+|+++
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV   76 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERL------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV   76 (85)
T ss_pred             eeeccccCcchHHHHHHHHHc------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence            679999999998876666554      34444555543210               1245567779999876 577664

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=90.76  E-value=0.12  Score=36.49  Aligned_cols=25  Identities=4%  Similarity=0.025  Sum_probs=21.2

Q ss_pred             ccccCCccccCCCccccceecCceE
Q 029703           21 KQQFQQPWSSGSSSCLLLQKNSAFF   45 (189)
Q Consensus        21 ~~~~~~~~~i~g~Ptl~~~~~~~~~   45 (189)
                      -..+...|+|.++||+.+|++|...
T Consensus        80 ~~~LA~~fgV~siPTLl~FkdGk~v  104 (132)
T PRK11509         80 SEAIGDRFGVFRFPATLVFTGGNYR  104 (132)
T ss_pred             CHHHHHHcCCccCCEEEEEECCEEE
Confidence            3456689999999999999999874

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=90.61  E-value=0.086  Score=36.05  Aligned_cols=23  Identities=9%  Similarity=0.271  Sum_probs=19.9

Q ss_pred             ccCCccccCCCccccceecCceE
Q 029703           23 QFQQPWSSGSSSCLLLQKNSAFF   45 (189)
Q Consensus        23 ~~~~~~~i~g~Ptl~~~~~~~~~   45 (189)
                      .....|+|.+.||+.+|++|...
T Consensus        74 ~la~~f~V~sIPTli~fkdGk~v   96 (111)
T cd02965          74 ALAARFGVLRTPALLFFRDGRYV   96 (111)
T ss_pred             HHHHHcCCCcCCEEEEEECCEEE
Confidence            45588999999999999999774

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=90.59  E-value=0.11  Score=34.78  Aligned_cols=27  Identities=7%  Similarity=-0.074  Sum_probs=21.3

Q ss_pred             ccCCccccCCCccccceecCce-EEEeC
Q 029703           23 QFQQPWSSGSSSCLLLQKNSAF-FWVDT   49 (189)
Q Consensus        23 ~~~~~~~i~g~Ptl~~~~~~~~-~~~~g   49 (189)
                      .+++.|+|.++||+.+|++|.. ..+.|
T Consensus        62 ~l~~~~~V~~~Pt~~~~~~G~~v~~~~G   89 (103)
T cd02985          62 ELCRREKIIEVPHFLFYKDGEKIHEEEG   89 (103)
T ss_pred             HHHHHcCCCcCCEEEEEeCCeEEEEEeC
Confidence            4668899999999999998865 34444

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=90.52  E-value=0.15  Score=33.95  Aligned_cols=29  Identities=7%  Similarity=0.052  Sum_probs=22.2

Q ss_pred             cccCCccccCCCccccceecCceEEEeCC
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAFFWVDTA   50 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~~g~   50 (189)
                      ...|+.|+|+++||+.+++++....+.|.
T Consensus        62 ~~~~~~~~I~~~Pt~~l~~~~~~~~~~G~   90 (104)
T cd03000          62 SSIASEFGVRGYPTIKLLKGDLAYNYRGP   90 (104)
T ss_pred             HhHHhhcCCccccEEEEEcCCCceeecCC
Confidence            45678899999999999987655555543

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PHA03075 glutaredoxin-like protein; Provisional

Probab=90.27  E-value=0.59  Score=31.98  Aligned_cols=36  Identities=22%  Similarity=0.458  Sum_probs=28.2

Q ss_pred             CcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEc
Q 029703           98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV  137 (189)
Q Consensus        98 k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~  137 (189)
                      |.++|.|.-|.|+-|+.....+.++..+|    .+.+||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI   37 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI   37 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence            56899999999999999999997776665    3444444

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=90.04  E-value=0.14  Score=33.42  Aligned_cols=29  Identities=14%  Similarity=-0.004  Sum_probs=22.2

Q ss_pred             cccCCccccCCCccccceecCce-EEEeCC
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDTA   50 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~g~   50 (189)
                      ..+|+.|+|.++||+.++++|.. ..+.|.
T Consensus        56 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~   85 (96)
T cd02956          56 PQIAQQFGVQALPTVYLFAAGQPVDGFQGA   85 (96)
T ss_pred             HHHHHHcCCCCCCEEEEEeCCEEeeeecCC
Confidence            45778999999999999998765 234443

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=89.88  E-value=2.6  Score=26.25  Aligned_cols=51  Identities=14%  Similarity=0.176  Sum_probs=30.9

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHhCCCCCCCeEEE
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISKMPTIQI  158 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~~  158 (189)
                      ..++.++|+.|++..-.+.+.      ++.+-.++++..   ..++.+.-+-..+|+++.
T Consensus         3 ~Ly~~~~sp~~~kv~~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~   56 (77)
T cd03041           3 ELYEFEGSPFCRLVREVLTEL------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD   56 (77)
T ss_pred             eEecCCCCchHHHHHHHHHHc------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence            456678999999877666543      233333444432   223444456678999854

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=89.81  E-value=0.13  Score=33.58  Aligned_cols=29  Identities=0%  Similarity=-0.034  Sum_probs=23.2

Q ss_pred             cccCCccccCCCccccceecCc-eEEEeCC
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSA-FFWVDTA   50 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~-~~~~~g~   50 (189)
                      ...|+.|+|.++|++.++++|. ...|.|.
T Consensus        59 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~   88 (102)
T TIGR01126        59 KDLASRFGVSGFPTIKFFPKGKKPVDYEGG   88 (102)
T ss_pred             HHHHHhCCCCcCCEEEEecCCCcceeecCC
Confidence            4567899999999999999887 4556554

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=89.71  E-value=3.3  Score=25.55  Aligned_cols=52  Identities=21%  Similarity=0.384  Sum_probs=30.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC-hHHHHHhCCCCCCCeEEEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-SKDLVKRGNISKMPTIQIW  159 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~-~~~l~~~~~i~~~Pt~~~~  159 (189)
                      +..|+.+.|+.|++..-.+.+.      .+.+-.++++.. ...+ +.-+...+|++..-
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~   54 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYH------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVE   54 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC------CCceEEEECCchhHHHH-HHhCCCccCEEEEC
Confidence            3467789999999987665543      233333343322 1123 33466789998753

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=89.63  E-value=0.15  Score=39.30  Aligned_cols=29  Identities=10%  Similarity=0.202  Sum_probs=24.4

Q ss_pred             cccCCccccCCCccccceecCceEEEeCC
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAFFWVDTA   50 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~~g~   50 (189)
                      ...|+.|+|++|||+.+|++|....+.++
T Consensus        96 ~~l~~~~~I~~~PTl~~f~~G~~v~~~~G  124 (224)
T PTZ00443         96 LNLAKRFAIKGYPTLLLFDKGKMYQYEGG  124 (224)
T ss_pred             HHHHHHcCCCcCCEEEEEECCEEEEeeCC
Confidence            45788999999999999999987766554

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=89.41  E-value=3.5  Score=25.45  Aligned_cols=57  Identities=18%  Similarity=0.178  Sum_probs=39.5

Q ss_pred             EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEE
Q 029703          103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      .++.++|+.|++..-.++..    +-.+.+..++.......+.+...-..+|++.  .+|..+
T Consensus         1 Ly~~~~Sp~~~kv~~~l~~~----~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l   57 (75)
T PF13417_consen    1 LYGFPGSPYSQKVRLALEEK----GIPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL   57 (75)
T ss_dssp             EEEETTSHHHHHHHHHHHHH----TEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE
T ss_pred             CCCcCCChHHHHHHHHHHHc----CCeEEEeccCcccchhHHHhhcccccceEEE--ECCEEE
Confidence            36789999999987655443    1245666666655544577778888999997  567653

...

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=89.40  E-value=0.098  Score=35.75  Aligned_cols=24  Identities=4%  Similarity=-0.101  Sum_probs=20.5

Q ss_pred             ccccCCccccCCCccccceecCce
Q 029703           21 KQQFQQPWSSGSSSCLLLQKNSAF   44 (189)
Q Consensus        21 ~~~~~~~~~i~g~Ptl~~~~~~~~   44 (189)
                      ....|+.|+|++|||+++|+++..
T Consensus        67 ~~~~~~~~~i~~~Pt~~lf~~~~~   90 (114)
T cd02992          67 NVALCRDFGVTGYPTLRYFPPFSK   90 (114)
T ss_pred             hHHHHHhCCCCCCCEEEEECCCCc
Confidence            356789999999999999998764

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PRK12559 transcriptional regulator Spx; Provisional

Probab=89.29  E-value=0.34  Score=34.09  Aligned_cols=34  Identities=15%  Similarity=0.330  Sum_probs=23.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV  140 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~  140 (189)
                      +..|+.++|+.|++....|++      .++.+-.+|+...
T Consensus         2 i~iY~~~~C~~crkA~~~L~~------~gi~~~~~di~~~   35 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEE------NQIDYTEKNIVSN   35 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHH------cCCCeEEEEeeCC
Confidence            456889999999997765544      2455555665543

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=89.08  E-value=1.7  Score=25.51  Aligned_cols=56  Identities=13%  Similarity=0.229  Sum_probs=34.9

Q ss_pred             EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH-HHHHhCCCCCCCeEEEEeCCeE
Q 029703          103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK-DLVKRGNISKMPTIQIWKDGEM  164 (189)
Q Consensus       103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~-~l~~~~~i~~~Pt~~~~~~G~~  164 (189)
                      .|+.++|+.|++..-.+....    -.+....++...... .+.+..+-..+|++..  +|..
T Consensus         3 ly~~~~~~~~~~~~~~l~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~   59 (71)
T cd00570           3 LYYFPGSPRSLRVRLALEEKG----LPYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLV   59 (71)
T ss_pred             EEeCCCCccHHHHHHHHHHcC----CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEE
Confidence            577889999998776665542    234445555443321 2455667789998764  4643

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=88.97  E-value=0.67  Score=31.25  Aligned_cols=34  Identities=15%  Similarity=0.143  Sum_probs=24.7

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS  141 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~  141 (189)
                      ..|+.|+|+.|++....|++      .++.+-.+|+.+.+
T Consensus         2 ~iy~~~~C~~crka~~~L~~------~~i~~~~~di~~~p   35 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEA------RGVAYTFHDYRKDG   35 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHH------cCCCeEEEecccCC
Confidence            46889999999998776654      25666667766553

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=88.78  E-value=0.19  Score=34.08  Aligned_cols=26  Identities=8%  Similarity=0.102  Sum_probs=21.0

Q ss_pred             cccCCccccCCCccccceecCceEEE
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAFFWV   47 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~   47 (189)
                      ...|+.|+|+++||+.+|++|.....
T Consensus        69 ~~l~~~~~V~~~Pt~~i~~~g~~~~~   94 (111)
T cd02963          69 RRLARKLGAHSVPAIVGIINGQVTFY   94 (111)
T ss_pred             HHHHHHcCCccCCEEEEEECCEEEEE
Confidence            35678899999999999998866443

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.62  E-value=0.87  Score=35.07  Aligned_cols=39  Identities=21%  Similarity=0.361  Sum_probs=28.7

Q ss_pred             HHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703          144 LVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       144 l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      .+++.||+++|||++  +|+  ..+.|..+.+.+.+.|++.+.
T Consensus       176 ~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~  214 (225)
T COG2761         176 AAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLA  214 (225)
T ss_pred             HHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHh
Confidence            688899999999998  444  356899999555555555443

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=88.34  E-value=5.6  Score=28.84  Aligned_cols=44  Identities=20%  Similarity=0.132  Sum_probs=29.7

Q ss_pred             cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK  139 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~  139 (189)
                      -.+|+++|.=.|+-|+.--+ ...|+.+.++|++ .+.++..-|++
T Consensus        23 ~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQ   67 (162)
T COG0386          23 YKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQ   67 (162)
T ss_pred             hCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccc
Confidence            36888888888999986542 3456667777743 46666666654

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=88.26  E-value=6.5  Score=27.03  Aligned_cols=86  Identities=17%  Similarity=0.150  Sum_probs=50.8

Q ss_pred             cEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCChH-----------HHHHhCCCCCCC-eEEEE-eCCe
Q 029703           99 PILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSK-----------DLVKRGNISKMP-TIQIW-KDGE  163 (189)
Q Consensus        99 ~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~~-----------~l~~~~~i~~~P-t~~~~-~~G~  163 (189)
                      -++|.|. ++.-+.-+.+...|.+....+. .++.++.+--+....           .+.++|++..-. +++++ ++|.
T Consensus        11 R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~   90 (118)
T PF13778_consen   11 RLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGG   90 (118)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCc
Confidence            3444443 3344444444555555333442 356666653332221           488999976433 34444 7999


Q ss_pred             EEEEEeCCCcchhhHHHHHHHHHhh
Q 029703          164 MKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       164 ~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +..++....+.    ++|-+.|+.+
T Consensus        91 vK~r~~~p~~~----~~lf~~ID~M  111 (118)
T PF13778_consen   91 VKLRWPEPIDP----EELFDTIDAM  111 (118)
T ss_pred             EEEecCCCCCH----HHHHHHHhCC
Confidence            98998888888    8888888754

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=87.71  E-value=2.8  Score=25.46  Aligned_cols=56  Identities=9%  Similarity=0.200  Sum_probs=31.2

Q ss_pred             EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703          103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM  164 (189)
Q Consensus       103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~  164 (189)
                      .++.++|++|++..-.+....-    .+....++...... ..+..+-..+|++.. .+|..
T Consensus         3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~-~~~~~~~~~vP~L~~-~~~~~   58 (71)
T cd03037           3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEAT-PIRMIGAKQVPILEK-DDGSF   58 (71)
T ss_pred             eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHH-HHHhcCCCccCEEEe-CCCeE
Confidence            4678899999987766654311    23333444332222 234445567998743 34543

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=87.70  E-value=0.19  Score=32.44  Aligned_cols=21  Identities=10%  Similarity=0.121  Sum_probs=18.7

Q ss_pred             cccCCccccCCCccccceecC
Q 029703           22 QQFQQPWSSGSSSCLLLQKNS   42 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~   42 (189)
                      ..+|+.|+|+++||+.+++++
T Consensus        61 ~~~~~~~~i~~~Pt~~~~~~~   81 (101)
T cd02961          61 NDLCSEYGVRGYPTIKLFPNG   81 (101)
T ss_pred             HHHHHhCCCCCCCEEEEEcCC
Confidence            457899999999999999877

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=87.45  E-value=0.54  Score=32.13  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=24.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV  140 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~  140 (189)
                      +..|+.++|+.|++....|++.      ++.+-.+|+...
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~   35 (115)
T cd03032           2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ   35 (115)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence            3467789999999987766552      456667776554

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=87.29  E-value=0.25  Score=32.43  Aligned_cols=23  Identities=4%  Similarity=0.151  Sum_probs=19.6

Q ss_pred             ccccCCccccCCCccccceecCc
Q 029703           21 KQQFQQPWSSGSSSCLLLQKNSA   43 (189)
Q Consensus        21 ~~~~~~~~~i~g~Ptl~~~~~~~   43 (189)
                      ....|+.++|+++||+.++++++
T Consensus        64 ~~~~~~~~~i~~~P~~~~~~~~~   86 (105)
T cd02998          64 NKDLAKKYGVSGFPTLKFFPKGS   86 (105)
T ss_pred             chhhHHhCCCCCcCEEEEEeCCC
Confidence            35678999999999999998773

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=87.22  E-value=1.2  Score=33.48  Aligned_cols=41  Identities=17%  Similarity=0.213  Sum_probs=29.4

Q ss_pred             HHHHhCCCCCCCeEEEEeCCeEEEEEeC--CCcchhhHHHHHHHHHh
Q 029703          143 DLVKRGNISKMPTIQIWKDGEMKSEVIG--GHKAWLVIEEVREMIKK  187 (189)
Q Consensus       143 ~l~~~~~i~~~Pt~~~~~~G~~~~~~~g--~~~~~~~~~~l~~~i~~  187 (189)
                      .+++++++.++||+++-+||+.-.--.|  ..+.    +.+..++.+
T Consensus       165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~----~~~~arl~~  207 (212)
T COG3531         165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSP----DAWLARLAQ  207 (212)
T ss_pred             HHHHHhccCCCCeeeeeeCCceEeccCCcccCCc----HHHHHHHHH
Confidence            3788999999999999999987554445  3444    445555443

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=87.19  E-value=0.28  Score=33.04  Aligned_cols=28  Identities=11%  Similarity=0.092  Sum_probs=21.4

Q ss_pred             ccCC-ccccCCCccccceecCce--EEEeCC
Q 029703           23 QFQQ-PWSSGSSSCLLLQKNSAF--FWVDTA   50 (189)
Q Consensus        23 ~~~~-~~~i~g~Ptl~~~~~~~~--~~~~g~   50 (189)
                      .+|. .++|.+|||+.+|++++.  ..|.|.
T Consensus        68 ~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~   98 (109)
T cd02993          68 EFAKEELQLKSFPTILFFPKNSRQPIKYPSE   98 (109)
T ss_pred             hhHHhhcCCCcCCEEEEEcCCCCCceeccCC
Confidence            4565 589999999999988653  667664

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=86.76  E-value=0.38  Score=32.62  Aligned_cols=22  Identities=18%  Similarity=0.104  Sum_probs=19.6

Q ss_pred             ccCCccccCCCccccceecCce
Q 029703           23 QFQQPWSSGSSSCLLLQKNSAF   44 (189)
Q Consensus        23 ~~~~~~~i~g~Ptl~~~~~~~~   44 (189)
                      ..++.|+|.++||+.+|++|..
T Consensus        67 ~l~~~~~i~~~Pt~~~f~~G~~   88 (113)
T cd02957          67 FLVNYLDIKVLPTLLVYKNGEL   88 (113)
T ss_pred             HHHHhcCCCcCCEEEEEECCEE
Confidence            5678999999999999999866

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PTZ00051 thioredoxin; Provisional

Probab=86.44  E-value=0.27  Score=32.10  Aligned_cols=29  Identities=14%  Similarity=-0.042  Sum_probs=22.4

Q ss_pred             cccCCccccCCCccccceecCce-EEEeCC
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDTA   50 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~g~   50 (189)
                      ...+..|+|.++||+.++++|.. ..+.|.
T Consensus        61 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~   90 (98)
T PTZ00051         61 SEVAEKENITSMPTFKVFKNGSVVDTLLGA   90 (98)
T ss_pred             HHHHHHCCCceeeEEEEEeCCeEEEEEeCC
Confidence            45678899999999999998876 344443

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=86.26  E-value=1.3  Score=31.07  Aligned_cols=35  Identities=17%  Similarity=0.277  Sum_probs=24.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS  141 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~  141 (189)
                      +..|+.++|+.|++....|.+      .++.+-.+|+...+
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~------~gi~~~~idi~~~~   36 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEE------HDIPFTERNIFSSP   36 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHH------cCCCcEEeeccCCh
Confidence            456789999999997766644      24666667765543

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=86.01  E-value=5  Score=25.78  Aligned_cols=54  Identities=9%  Similarity=0.212  Sum_probs=34.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEE
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQI  158 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~  158 (189)
                      +..++.+.|+.|++..-.+...    +-.+.+..++.....+.+.+......+|++..
T Consensus        19 ~~Ly~~~~sp~~~kv~~~L~~~----gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~   72 (89)
T cd03055          19 IRLYSMRFCPYAQRARLVLAAK----NIPHEVININLKDKPDWFLEKNPQGKVPALEI   72 (89)
T ss_pred             EEEEeCCCCchHHHHHHHHHHc----CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence            4456788899999876555543    22455566665444333666667789999874

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>PRK10996 thioredoxin 2; Provisional

Probab=85.92  E-value=0.34  Score=34.30  Aligned_cols=23  Identities=13%  Similarity=0.267  Sum_probs=19.5

Q ss_pred             cccCCccccCCCccccceecCce
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAF   44 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~   44 (189)
                      ...++.|+|.|+||+.+|++|..
T Consensus        96 ~~l~~~~~V~~~Ptlii~~~G~~  118 (139)
T PRK10996         96 RELSARFRIRSIPTIMIFKNGQV  118 (139)
T ss_pred             HHHHHhcCCCccCEEEEEECCEE
Confidence            45678999999999999988765

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=85.86  E-value=0.37  Score=31.28  Aligned_cols=23  Identities=4%  Similarity=0.239  Sum_probs=19.4

Q ss_pred             cccCCccccCCCccccceecCce
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAF   44 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~   44 (189)
                      ...+..|+|.++||+.+|++|..
T Consensus        58 ~~~~~~~~i~~~Pt~~~~~~g~~   80 (97)
T cd02984          58 PEISEKFEITAVPTFVFFRNGTI   80 (97)
T ss_pred             HHHHHhcCCccccEEEEEECCEE
Confidence            34678899999999999988765

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=85.19  E-value=0.35  Score=32.10  Aligned_cols=23  Identities=13%  Similarity=0.247  Sum_probs=19.5

Q ss_pred             ccCCccccCCCccccceecCceE
Q 029703           23 QFQQPWSSGSSSCLLLQKNSAFF   45 (189)
Q Consensus        23 ~~~~~~~i~g~Ptl~~~~~~~~~   45 (189)
                      ..++.|+|+++||+.+|++|...
T Consensus        62 ~~~~~~~v~~~Pt~~~~~~g~~~   84 (102)
T cd02948          62 DTLKRYRGKCEPTFLFYKNGELV   84 (102)
T ss_pred             HHHHHcCCCcCcEEEEEECCEEE
Confidence            45689999999999999988763

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=85.07  E-value=1.8  Score=32.12  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=26.2

Q ss_pred             HHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703          144 LVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       144 l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      .+.+.||.++||+++  +|+.  .+.|..+.    +.+.+.|
T Consensus       167 ~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~----~~~~~~i  200 (201)
T cd03024         167 RARQLGISGVPFFVF--NGKY--AVSGAQPP----EVFLQAL  200 (201)
T ss_pred             HHHHCCCCcCCEEEE--CCeE--eecCCCCH----HHHHHHh
Confidence            677899999999988  7753  46888887    6666554

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=84.98  E-value=0.48  Score=32.55  Aligned_cols=26  Identities=4%  Similarity=0.119  Sum_probs=21.1

Q ss_pred             cccCCccccCCCccccceecCceEEE
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAFFWV   47 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~   47 (189)
                      ..+.+.|+|++.||+.+|++|....-
T Consensus        58 ~~la~~~~V~~iPTf~~fk~G~~v~~   83 (114)
T cd02954          58 PDFNKMYELYDPPTVMFFFRNKHMKI   83 (114)
T ss_pred             HHHHHHcCCCCCCEEEEEECCEEEEE
Confidence            34558899999999999999977443

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=84.90  E-value=1.4  Score=27.00  Aligned_cols=56  Identities=16%  Similarity=0.143  Sum_probs=35.6

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHhCCCCCCCeEEEEeCCe
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISKMPTIQIWKDGE  163 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~~~~~G~  163 (189)
                      ..|+.++|+.|++..-.+++.    +-.+....+|....   ..++.+......+|++..  +|.
T Consensus         2 ~Ly~~~~~~~~~~v~~~l~~~----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~   60 (74)
T cd03045           2 DLYYLPGSPPCRAVLLTAKAL----GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGF   60 (74)
T ss_pred             EEEeCCCCCcHHHHHHHHHHc----CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCE
Confidence            357889999999876666553    22455555654332   234666667789999953  454

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=84.29  E-value=2.7  Score=34.60  Aligned_cols=75  Identities=15%  Similarity=0.165  Sum_probs=43.0

Q ss_pred             Chhhhhhh----HHHHHHHHHhC---CCeEEEEEEccCC--hHHHHHhCCCCC-CCeEEEEeCCeEEEEEeCCCcchhhH
Q 029703          109 CRKCIYLK----PKLEKLAAEFD---TKLKFYYVDVNKV--SKDLVKRGNISK-MPTIQIWKDGEMKSEVIGGHKAWLVI  178 (189)
Q Consensus       109 C~~C~~~~----~~l~~~~~~~~---~~v~~~~vd~~~~--~~~l~~~~~i~~-~Pt~~~~~~G~~~~~~~g~~~~~~~~  178 (189)
                      ||.|..-.    ....++-+.+.   ..++++.+-|-.+  .+.-...+||.+ -+..++|.+|+.+.++.+..-.+.+.
T Consensus       271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~  350 (360)
T PRK00366        271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE  350 (360)
T ss_pred             CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence            66665544    33344444442   2377787777422  222455677764 44777889999988887665443333


Q ss_pred             HHHHH
Q 029703          179 EEVRE  183 (189)
Q Consensus       179 ~~l~~  183 (189)
                      +++.+
T Consensus       351 ~~i~~  355 (360)
T PRK00366        351 AEIEA  355 (360)
T ss_pred             HHHHH
Confidence            33333

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=84.28  E-value=1.8  Score=29.65  Aligned_cols=34  Identities=15%  Similarity=0.378  Sum_probs=25.3

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS  141 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~  141 (189)
                      ..|+.++|+.|++....|++      .++.+-.+|+.+.+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~   35 (117)
T TIGR01617         2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDG   35 (117)
T ss_pred             EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCCh
Confidence            35789999999998776665      35677777876654

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>PHA02278 thioredoxin-like protein

Probab=84.26  E-value=0.45  Score=31.96  Aligned_cols=22  Identities=14%  Similarity=0.104  Sum_probs=19.2

Q ss_pred             cCCccccCCCccccceecCceE
Q 029703           24 FQQPWSSGSSSCLLLQKNSAFF   45 (189)
Q Consensus        24 ~~~~~~i~g~Ptl~~~~~~~~~   45 (189)
                      ..+.|+|.+.||+.+|++|...
T Consensus        64 l~~~~~I~~iPT~i~fk~G~~v   85 (103)
T PHA02278         64 AVKLFDIMSTPVLIGYKDGQLV   85 (103)
T ss_pred             HHHHCCCccccEEEEEECCEEE
Confidence            5578999999999999998764

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=84.26  E-value=1.7  Score=32.06  Aligned_cols=30  Identities=30%  Similarity=0.582  Sum_probs=25.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHhCCCe
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKL  130 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v  130 (189)
                      +.+|+.+.|+.|-...+.+.++.+++..++
T Consensus         3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~   32 (193)
T cd03025           3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGI   32 (193)
T ss_pred             EEEEECCCCchhhCchHHHHHHHHHhCCCc
Confidence            567889999999999999999999884333

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=84.05  E-value=11  Score=25.64  Aligned_cols=90  Identities=17%  Similarity=0.187  Sum_probs=64.3

Q ss_pred             CCCcEEEEEecCCChhhhhhhHHHHHHHHHh--CCCeEEEEEEccCChH---HHHHhCCCC-CCCeEEEEe--CCe-EEE
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSK---DLVKRGNIS-KMPTIQIWK--DGE-MKS  166 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~--~~~v~~~~vd~~~~~~---~l~~~~~i~-~~Pt~~~~~--~G~-~~~  166 (189)
                      -+...++-|--+--+.-..|.+.+.++|+.+  +++..|+-||-+..+-   ---+.|+|. .-|.+=+..  +.+ .-.
T Consensus        19 ~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~   98 (120)
T cd03074          19 LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWM   98 (120)
T ss_pred             cCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeE
Confidence            3577888888888888899999999999997  4689999999999873   123445654 358887774  222 222


Q ss_pred             EEeCC---CcchhhHHHHHHHHHhhC
Q 029703          167 EVIGG---HKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       167 ~~~g~---~~~~~~~~~l~~~i~~~l  189 (189)
                      +..+.   .+.    ++|.+||+..|
T Consensus        99 ~m~~~~d~~t~----~~Le~WiedVL  120 (120)
T cd03074          99 EMDDDEDLPTA----EELEDWIEDVL  120 (120)
T ss_pred             ecccccccCcH----HHHHHHHHhhC
Confidence            33333   344    89999998764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=83.83  E-value=0.69  Score=28.96  Aligned_cols=23  Identities=17%  Similarity=0.231  Sum_probs=19.5

Q ss_pred             cccCCccccCCCccccceecCce
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAF   44 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~   44 (189)
                      ...+..|++.++||+.++++|..
T Consensus        53 ~~~~~~~~v~~~P~~~~~~~g~~   75 (93)
T cd02947          53 PELAEEYGVRSIPTFLFFKNGKE   75 (93)
T ss_pred             hhHHHhcCcccccEEEEEECCEE
Confidence            34678899999999999998864

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=83.74  E-value=0.67  Score=30.30  Aligned_cols=28  Identities=4%  Similarity=-0.009  Sum_probs=21.3

Q ss_pred             ccCCccccCCCccccceecCc---eEEEeCC
Q 029703           23 QFQQPWSSGSSSCLLLQKNSA---FFWVDTA   50 (189)
Q Consensus        23 ~~~~~~~i~g~Ptl~~~~~~~---~~~~~g~   50 (189)
                      ..|..+++.++||+.+|++|.   ...|.|.
T Consensus        64 ~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~   94 (104)
T cd02995          64 DVPSEFVVDGFPTILFFPAGDKSNPIKYEGD   94 (104)
T ss_pred             hhhhhccCCCCCEEEEEcCCCcCCceEccCC
Confidence            366788999999999999876   2445554

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria

Probab=83.45  E-value=0.42  Score=30.80  Aligned_cols=51  Identities=20%  Similarity=0.279  Sum_probs=40.9

Q ss_pred             cCCChhhhhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703          106 ASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus       106 a~wC~~C~~~~~~l~~~~~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      +..-+..+.....+..+.+.+ ...+.+-.||+.++++ ++..++|-.+||++
T Consensus         5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~-lAe~~~ivAtPtLi   56 (82)
T PF07689_consen    5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPE-LAEEDRIVATPTLI   56 (82)
T ss_dssp             SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHS-HHTTTEEECHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHh-HHhHCCeeecceEe
Confidence            444455566777778877764 5789999999999996 99999999999976

Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.

>PRK09381 trxA thioredoxin; Provisional

Probab=81.99  E-value=0.95  Score=30.16  Aligned_cols=24  Identities=21%  Similarity=0.147  Sum_probs=19.7

Q ss_pred             cccCCccccCCCccccceecCceE
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAFF   45 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~~   45 (189)
                      ...++.|+|.++||+.++++|...
T Consensus        65 ~~~~~~~~v~~~Pt~~~~~~G~~~   88 (109)
T PRK09381         65 PGTAPKYGIRGIPTLLLFKNGEVA   88 (109)
T ss_pred             hhHHHhCCCCcCCEEEEEeCCeEE
Confidence            345678999999999999988763

>TIGR01068 thioredoxin thioredoxin

Probab=81.82  E-value=0.77  Score=29.67  Aligned_cols=23  Identities=26%  Similarity=0.222  Sum_probs=19.2

Q ss_pred             cccCCccccCCCccccceecCce
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAF   44 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~   44 (189)
                      ...++.|+|.++||+.++++|..
T Consensus        58 ~~~~~~~~v~~~P~~~~~~~g~~   80 (101)
T TIGR01068        58 PDIAAKYGIRSIPTLLLFKNGKE   80 (101)
T ss_pred             HHHHHHcCCCcCCEEEEEeCCcE
Confidence            34678899999999999987765

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=81.57  E-value=2.6  Score=30.96  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=24.2

Q ss_pred             HHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703          144 LVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI  185 (189)
Q Consensus       144 l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i  185 (189)
                      .+.++||.++||+++  +|+   .+.|....    +.|.+.|
T Consensus       159 ~a~~~gi~gvPtfvv--~g~---~~~G~~~l----~~~~~~l  191 (192)
T cd03022         159 EAIARGVFGVPTFVV--DGE---MFWGQDRL----DMLEEAL  191 (192)
T ss_pred             HHHHcCCCcCCeEEE--CCe---eecccccH----HHHHHHh
Confidence            677899999999988  786   34687776    5555443

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		5e-10
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		9e-10
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		9e-10
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		3e-09
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		3e-09
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		3e-09
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		7e-09
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		7e-09
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		1e-08
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		1e-08
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		1e-08
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		2e-08
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		2e-08
3vfi_A	104	Crystal Structure Of A Metagenomic Thioredoxin Leng		3e-08
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		4e-08
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		7e-08
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		8e-08
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		9e-08
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		1e-07
2oe0_A	114	Crystal Structure Of Mitochondrial Thioredoxin 3 Fr		1e-07
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		2e-07
1ep7_A	112	Crystal Structure Of Wt Thioredoxin H From Chlamydo		2e-07
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		2e-07
1faa_A	124	Crystal Structure Of Thioredoxin F From Spinach Chl		3e-07
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		3e-07
1f9m_A	112	Crystal Structure Of Thioredoxin F From Spinach Chl		3e-07
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		4e-07
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		7e-07
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		8e-07
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		8e-07
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		1e-06
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		1e-06
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		1e-06
2o7k_A	107	S. Aureus Thioredoxin Length = 107		1e-06
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		2e-06
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		2e-06
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		2e-06
1ep8_A	112	Crystal Structure Of A Mutated Thioredoxin, D30a, F		2e-06
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		2e-06
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		2e-06
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		4e-06
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		4e-06
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		5e-06
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		5e-06
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		5e-06
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		5e-06
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		5e-06
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		5e-06
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		5e-06
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		5e-06
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		5e-06
2pu9_C	111	Crystal Srtucture Of The Binary Complex Between Fer		6e-06
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		6e-06
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		6e-06
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		6e-06
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		7e-06
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		8e-06
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		8e-06
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		8e-06
1r26_A	125	Crystal Structure Of Thioredoxin From Trypanosoma B		9e-06
3gnj_A	111	The Crystal Structure Of A Thioredoxin-Related Prot		9e-06
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		1e-05
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		1e-05
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		1e-05
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		1e-05
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		1e-05
2iwt_A	125	Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Compl		1e-05
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		1e-05
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		1e-05
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		1e-05
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		1e-05
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		2e-05
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		2e-05
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		2e-05
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		2e-05
1tho_A	109	Crystal Structure Of A Mutant Escherichia Coli Thio		2e-05
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		2e-05
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		2e-05
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		2e-05
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		2e-05
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		3e-05
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		3e-05
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		3e-05
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		3e-05
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		3e-05
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		3e-05
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		3e-05
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		3e-05
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		3e-05
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		4e-05
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		6e-05
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		7e-05
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		7e-05
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		8e-05
3e3e_A	105	Human Thioredoxin Double Mutant C35s,C73r Length =		8e-05
1f6m_C	108	Crystal Structure Of A Complex Between Thioredoxin		8e-05
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		9e-05
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		1e-04
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		1e-04
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		1e-04
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		1e-04
3qfa_C	116	Crystal Structure Of The Human Thioredoxin Reductas		1e-04
1zcp_A	108	Crystal Structure Of A Catalytic Site Mutant E. Col		1e-04
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		2e-04
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		2e-04
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		3e-04
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		4e-04

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 81  NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140
           ++ D  D  + +A+E  + ++ID+ ASWC  C ++ P   + A +F   + F  VDV+++
Sbjct: 20  HNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDEL 78
Query: 141 SKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHK 173
            K++ ++ N+  MPT    KDG    +V+G  K
Sbjct: 79  -KEVAEKYNVEAMPTFLFIKDGAEADKVVGARK 110

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC  C  + P +EK A ++ +   FY +DV++VS D+ ++  +S MPT+  +
Sbjct: 22  VVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDEVS-DVAQKAEVSSMPTLIFY 79
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+  + V+G + A +
Sbjct: 80  KGGKEVTRVVGANPAAI 96

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC  C  + P +EK A ++ +   FY +DV++VS D+ ++  +S MPT+  +
Sbjct: 29  VVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDEVS-DVAQKAEVSSMPTLIFY 86
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+  + V+G + A +
Sbjct: 87  KGGKEVTRVVGANPAAI 103

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  +Q +L+     +P+L+D+ A+WC  C  + P LE +AAE+  K++   +++++    
Sbjct: 13  DSFEQDVLKND---KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGT 69
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185
             K G +S +PT+ +++ GE+   ++G      ++ ++ + I
Sbjct: 70  AAKYGVMS-IPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
Query: 91  LRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI 150
           L  Q  ++ +++D+ A+WC  C  + P  ++L+ ++D    F  VDV+K+ ++  ++ NI
Sbjct: 27  LLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI--FVKVDVDKL-EETARKYNI 83
Query: 151 SKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           S MPT    K+GE   +V+G       I +V +MIKKF+
Sbjct: 84  SAMPTFIAIKNGEKVGDVVGAS-----IAKVEDMIKKFI 117

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
Query: 91  LRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI 150
           L  Q  ++ +++D+ A+WC  C  + P  ++L+ ++D    F  VDV+K+ ++  ++ NI
Sbjct: 18  LLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI--FVKVDVDKL-EETARKYNI 74
Query: 151 SKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           S MPT    K+GE   +V+G       I +V +MIKKF+
Sbjct: 75  SAMPTFIAIKNGEKVGDVVGAS-----IAKVEDMIKKFI 108

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 86  LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV 145
            D  +   ++  + ++ID+ ASWC  C  + P   + A +F   + F  VDV+++ KD+ 
Sbjct: 17  FDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAI-FLKVDVDEL-KDVA 74
Query: 146 KRGNISKMPTIQIWKDGEMKSEVIGGHK 173
           +  N+  MPT    KDGE    V+GG K
Sbjct: 75  EAYNVEAMPTFLFIKDGEKVDSVVGGRK 102

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 76  ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
           E++ +NDS   + +L    E   P+++D+ A WC  C  + P +++LA E+  K+  Y +
Sbjct: 1   EVQDVNDSSWKEFVL----ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKL 56
Query: 136 DVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG 171
           + ++ +  +  + NI  +PT+  +K+GE K  +IG 
Sbjct: 57  NTDE-APGIATQYNIRSIPTVLFFKNGERKESIIGA 91

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC  C  + P +EK + ++  +  FY +DV+++  D+ ++  +S MPT+ ++
Sbjct: 21  VVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLDVDELG-DVAQKNEVSAMPTLLLF 78
Query: 160 KDGEMKSEVIGGHKAWL 176
           K+G+  ++V+G + A +
Sbjct: 79  KNGKEVAKVVGANPAAI 95

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC  C  + P +EK + ++  +  FY +DV+++  D+ ++  +S MPT+ ++
Sbjct: 27  VVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLDVDELG-DVAQKNEVSAMPTLLLF 84
Query: 160 KDGEMKSEVIGGHKAWL 176
           K+G+  ++V+G + A +
Sbjct: 85  KNGKEVAKVVGANPAAI 101

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC     + P +EK A ++ +   FY +DV++VS D+ ++  +S MPT+  +
Sbjct: 22  VVVDFFATWCGPSKMIAPMIEKFAEQY-SDAAFYKLDVDEVS-DVAQKAEVSSMPTLIFY 79
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+  + V+G + A +
Sbjct: 80  KGGKEVTRVVGANPAAI 96

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC     + P +EK A ++ +   FY +DV++VS D+ ++  +S MPT+  +
Sbjct: 30  VVVDFFATWCGPSKMIAPMIEKFAEQY-SDAAFYKLDVDEVS-DVAQKAEVSSMPTLIFY 87
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+  + V+G + A +
Sbjct: 88  KGGKEVTRVVGANPAAI 104

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +NDS   + +L    E   P+++D+ A WC  C  + P +++LA E+  K+  Y ++ ++
Sbjct: 4   VNDSSWKEFVL----ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 59
Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG 171
            +  +  + NI  +PT+  +K+GE K  +IG 
Sbjct: 60  -APGIATQYNIRSIPTVLFFKNGERKESIIGA 90

>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin Length = 104

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 77  LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136
           L  ++DSD      L  ++   PI+I +  SWC+ C  +KP  E++A++ +  ++F Y+D
Sbjct: 1   LRSLSDSD----FQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMD 56
Query: 137 VNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG 171
                K + +  NI  +P++ ++ DG M  EV  G
Sbjct: 57  AEDAEKTMAEL-NIRTLPSLALFVDG-MIREVFSG 89

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 55/89 (61%), Gaps = 7/89 (7%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A WC  C  + P  E+ +  + TK+ F  VDV++VS ++ ++ NI+ MPT +++
Sbjct: 29  VIVDFFAEWCGPCKRIAPFYEECSKTY-TKMVFIKVDVDEVS-EVTEKENITSMPTFKVY 86
Query: 160 KDGEMKSEVIGGHKAWLVIEEVREMIKKF 188
           K+G     ++G + + L     +++I+K+
Sbjct: 87  KNGSSVDTLLGANDSAL-----KQLIEKY 110

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
           ++P+L+D+ A+WC  C  + P LE++A E  T L    +DV+  + +  +   +  +PT+
Sbjct: 25  NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD-TNPETARNFQVVSIPTL 83
Query: 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188
            ++KDG+    ++G      ++ E+ +++   
Sbjct: 84  ILFKDGQPVKRIVGAKGKAALLRELSDVVPNL 115

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
           ++P+L+D+ A+WC  C  + P LE++A E  T L    +DV+  + +  +   +  +PT+
Sbjct: 30  NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD-TNPETARNFQVVSIPTL 88
Query: 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188
            ++KDG+    ++G      ++ E+ +++   
Sbjct: 89  ILFKDGQPVKRIVGAKGKAALLRELSDVVPNL 120

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 75  VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY 134
           +E   +ND D    ++L   E S P+L+D+ A WC  C  + P ++++A E+  KLK   
Sbjct: 1   MEAGAVND-DTFKNVVL---ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVK 56
Query: 135 VDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIK 186
           ++ ++ S ++     I  +PTI ++K G+    +IG      +++ V + + 
Sbjct: 57  LNTDE-SPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN 107

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 76  ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
           E++ +NDS   + +L    E   P+++D+ A WC     + P +++LA E+  K+  Y +
Sbjct: 1   EVQDVNDSSWKEFVL----ESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKL 56
Query: 136 DVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG 171
           + ++ +  +  + NI  +PT+  +K+GE K  +IG 
Sbjct: 57  NTDE-APGIATQYNIRSIPTVLFFKNGERKESIIGA 91

>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           ++ID+ A+WC  C  ++P L KL   +   ++F   DV++ S D+ K   ++ MPT  + 
Sbjct: 33  LVIDFYATWCGPCKMMQPHLTKLIQAY-PDVRFVKCDVDE-SPDIAKECEVTAMPTFVLG 90
Query: 160 KDGEMKSEVIGGHKAWL 176
           KDG++  ++IG +   L
Sbjct: 91  KDGQLIGKIIGANPTAL 107

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC     + P +EK + ++  +  FY +DV+++  D+ ++  +S MPT+ ++
Sbjct: 27  VVVDFYATWCGPSKMIAPMIEKFSEQY-PQADFYKLDVDELG-DVAQKNEVSAMPTLLLF 84
Query: 160 KDGEMKSEVIGGHKAWL 176
           K+G+  ++V+G + A +
Sbjct: 85  KNGKEVAKVVGANPAAI 101

>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas Reinhardtii Length = 112

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 87  DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK 146
           D  L + +E  +PI++D+ A+WC  C  + P  E L+ ++  K+ F  VDV+ V+     
Sbjct: 14  DAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEA 73
Query: 147 RGNISKMPTIQIWKDGEMKSEVIG 170
            G I+ MPT  ++KDG    +++G
Sbjct: 74  AG-ITAMPTFHVYKDGVKADDLVG 96

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           + D   LD  L +A    + +++D+ A+WC  C  + PKL +L+ +F   +    VDV++
Sbjct: 10  VKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 67
Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGH 172
             +D+    NIS MPT    K+G    E  G +
Sbjct: 68  -CEDIAMEYNISSMPTFVFLKNGVKVEEFAGAN 99

>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157
           +P+++D    WC  C  + PK EKLA E+   + F  +D N+ +K L K   I  +PT +
Sbjct: 38  KPVVLDMFTQWCGPCKAMAPKYEKLAEEY-LDVIFLKLDCNQENKTLAKELGIRVVPTFK 96
Query: 158 IWKDGEMKSEVIGG 171
           I K+  +  EV G 
Sbjct: 97  ILKENSVVGEVTGA 110

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           + D   LD  L +A    + +++D+ A+WC  C  + PKL +L+ +F   +    VDV++
Sbjct: 5   VKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 62
Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGH 172
             +D+    NIS MPT    K+G    E  G +
Sbjct: 63  -CEDIAMEYNISSMPTFVFLKNGVKVEEFAGAN 94

>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Short Form) Length = 112

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157
           +P+++D    WC  C  + PK EKLA E+   + F  +D N+ +K L K   I  +PT +
Sbjct: 26  KPVVLDMFTQWCGPCKAMAPKYEKLAEEY-LDVIFLKLDCNQENKTLAKELGIRVVPTFK 84
Query: 158 IWKDGEMKSEVIGG 171
           I K+  +  EV G 
Sbjct: 85  ILKENSVVGEVTGA 98

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
Query: 78  EPIN--DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
           EP+   +S + D+ + +    ++ +++D+ A WC  C+ L P +E+LA ++  ++ F  +
Sbjct: 6   EPVKHLNSKNFDEFITK----NKIVVVDFWAEWCAPCLILAPVIEELANDY-PQVAFGKL 60
Query: 136 DVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG 171
           +  + S+D+  R  I  +PTI  +K+GE+  +++G 
Sbjct: 61  NTEE-SQDIAMRYGIMSLPTIMFFKNGELVDQILGA 95

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141
           DS + D   L + E++   ++D+ A WC  C+ L P +E+LA ++  ++ F  ++ ++ +
Sbjct: 5   DSKNFDS-FLASHEIA---VVDFWAEWCAPCLILAPIIEELAEDY-PQVGFGKLNSDE-N 58
Query: 142 KDLVKRGNISKMPTIQIWKDGEMKSEVIGG 171
            D+  R  +  +PT+  +KDGE   E+IG 
Sbjct: 59  PDIAARYGVMSLPTVIFFKDGEPVDEIIGA 88

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQI 158
           P+++D+ A WC  C  L P+LEK+ A+   K+    VD++    DL     +S +PT+  
Sbjct: 33  PVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD-HTDLAIEYEVSAVPTVLA 91
Query: 159 WKDGEMKSEVIG 170
            K+G++  + +G
Sbjct: 92  MKNGDVVDKFVG 103

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           ++ID+ ASWC  C  + P    LA +F   + F  VDV+++ K + ++ ++  MPT    
Sbjct: 37  VVIDFTASWCGPCRIMAPVFADLAKKFPNAV-FLKVDVDEL-KPIAEQFSVEAMPTFLFM 94
Query: 160 KDGEMKSEVIGGHK 173
           K+G++K  V+G  K
Sbjct: 95  KEGDVKDRVVGAIK 108

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
           ++P+L+D+ A+WC     + P LE++A E  T L    +DV+  + +  +   +  +PT+
Sbjct: 27  NKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVD-TNPETARNFQVVSIPTL 85
Query: 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188
            ++KDG+    ++G      ++ E+ +++   
Sbjct: 86  ILFKDGQPVKRIVGAKGKAALLRELSDVVPNL 117

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160
           L+D+ A+WC  C  + P LE+LAA+++ K     +DV++ +     +  +  +PT+ ++K
Sbjct: 23  LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDE-NPSTAAKYEVMSIPTLIVFK 81
Query: 161 DGEMKSEVIG 170
           DG+   +V+G
Sbjct: 82  DGQPVDKVVG 91

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160
           L+D+ A+WC  C  + P LE+LAA+++ K     +DV++ +     +  +  +PT+ ++K
Sbjct: 24  LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDE-NPSTAAKYEVMSIPTLIVFK 82
Query: 161 DGEMKSEVIG 170
           DG+   +V+G
Sbjct: 83  DGQPVDKVVG 92

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160
           L+D+ A+WC  C  + P LE+LAA+++ K     +DV++ +     +  +  +PT+ ++K
Sbjct: 24  LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDE-NPSTAAKYEVMSIPTLIVFK 82
Query: 161 DGEMKSEVIG 170
           DG+   +V+G
Sbjct: 83  DGQPVDKVVG 92

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +L+D+ A WC  C  + P LE++A E++ KL    +DV++  K    R  +  +PT+ ++
Sbjct: 22  VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK-TAXRYRVXSIPTVILF 80
Query: 160 KDGEMKSEVIGGH 172
           KDG+    ++G  
Sbjct: 81  KDGQPVEVLVGAQ 93

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +L+D+ A WC  C  + P LE++A E++ KL    +DV++  K    R  +  +PT+ ++
Sbjct: 21  VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK-TAXRYRVXSIPTVILF 79
Query: 160 KDGEMKSEVIGGH 172
           KDG+    ++G  
Sbjct: 80  KDGQPVEVLVGAQ 92

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +L D+ A WC  C  + P LE+L  E   KLK   +DV++  +   K G +S +PT+ + 
Sbjct: 20  VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMS-IPTLLVL 78
Query: 160 KDGEMKSEVIG 170
           KDGE+    +G
Sbjct: 79  KDGEVVETSVG 89

>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From Chlamydomonas Reinhardtii Length = 112

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 87  DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK 146
           D  L + +E  +PI++ + A+WC  C  + P  E L+ ++  K+ F  VDV+ V+     
Sbjct: 14  DAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEA 73
Query: 147 RGNISKMPTIQIWKDGEMKSEVIG 170
            G I+ MPT  ++KDG    +++G
Sbjct: 74  AG-ITAMPTFHVYKDGVKADDLVG 96

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P LE++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           I++D+ ASWC  C  + P   +LA +F   + F  VDV+++ K + +  N+  MPT    
Sbjct: 29  IVVDFTASWCPPCKMIAPIFAELAKKF-PNVTFLKVDVDEL-KAVAEEWNVEAMPTFIFL 86
Query: 160 KDGEMKSEVIGGHKAWL 176
           KDG++  + +G  K  L
Sbjct: 87  KDGKLVDKTVGADKDGL 103

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC  C  +KP    L+ ++ + + F  VDVN   +D+     +  MPT Q +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVND-CQDVASECEVKCMPTFQFF 80
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+   E  G +K  L
Sbjct: 81  KKGQKVGEFSGANKEKL 97

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC  C  +KP    L+ ++ + + F  VDV+   +D+     +  MPT Q +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDC-QDVASESEVKSMPTFQFF 80
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+   E  G +K  L
Sbjct: 81  KKGQKVGEFSGANKEKL 97

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 20  DSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 76
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 77  APKYG-IRGIPTLLLFKNGEVAATKVG 102

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRSIPTLLLFKNGEVAATKVG 92

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 111

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157
           +P+++D    WC     + PK EKLA E+   + F  +D N+ +K L K   I  +PT +
Sbjct: 25  KPVVLDMFTQWCGPSKAMAPKYEKLAEEY-LDVIFLKLDCNQENKTLAKELGIRVVPTFK 83
Query: 158 IWKDGEMKSEVIGG 171
           I K+  +  EV G 
Sbjct: 84  ILKENSVVGEVTGA 97

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLA-AEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQI 158
           ++ID+ A+WC  C  + P  EK++      K+ FY VDV++ S+ + +   I  MPT   
Sbjct: 36  VVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQ-IAQEVGIRAMPTFVF 94
Query: 159 WKDGEMKSEVIGGHKAWL 176
           +K+G+    V+G   + L
Sbjct: 95  FKNGQKIDTVVGADPSKL 112

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 11  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 67
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I   PT+ ++K+GE+ +  +G
Sbjct: 68  APKYG-IRGTPTLLLFKNGEVAATKVG 93

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+ +A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC  C  +KP    L+ ++ + + F  VDV+   +D+     +  MPT Q +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDC-QDVASECEVKSMPTFQFF 80
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+   E  G +K  L
Sbjct: 81  KKGQKVGEFSGANKEKL 97

>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei Brucei Length = 125

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 96  LSQPIL-IDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKM 153
           +S+ IL + W  A WC  C  ++  +EK+A EF T +KF  VD +  S ++V +  + ++
Sbjct: 34  MSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT-VKFAKVDADNNS-EIVSKCRVLQL 91
Query: 154 PTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIK 186
           PT  I + G+M   VIG +   L  +++R++IK
Sbjct: 92  PTFIIARSGKMLGHVIGANPGMLR-QKLRDIIK 123

>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein From Desulfitobacterium Hafniense Dcb Length = 111

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141
           D++  +Q++       +  L+ +    C  C  + P LE+L   ++    FYYVDV +  
Sbjct: 10  DTNTFEQLIYDE---GKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE-E 65
Query: 142 KDLVKRGNISKMPTIQIWKDGEMKSEVIG 170
           K L +R ++  +P I  +KDGE K +  G
Sbjct: 66  KTLFQRFSLKGVPQILYFKDGEYKGKXAG 94

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           I++D+ A WC  C  + PK+E LA E   +++F  VDV++ +++   + +++ MPT    
Sbjct: 22  IVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVDQ-NEEAAAKYSVTAMPTFVFI 79
Query: 160 KDGEMKSEVIGGHKAWL 176
           KDG+      G ++  L
Sbjct: 80  KDGKEVDRFSGANETKL 96

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAACKVG 92

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC  C  +KP    L+ ++ + + F  VDV+  ++D+     +   PT Q +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD-AQDVASEAEVKATPTFQFF 80
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+   E  G +K  L
Sbjct: 81  KKGQKVGEFSGANKEKL 97

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           IL+D+ A WC  C  + P L+++A E+  KL    +++++      K G I  +PT+ ++
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 160 KDGEMKSEVIG 170
           K+GE+ +  +G
Sbjct: 82  KNGEVAATKVG 92

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           IL+D+ A WC  C  + P L+++A E+  KL    +++++      K G I  +PT+ ++
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 160 KDGEMKSEVIG 170
           K+GE+ +  +G
Sbjct: 82  KNGEVAATKVG 92

>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With The Target Protein Basi Length = 125

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           ++ID+ ASWC     + P    LA +F   + F  VDV+++ K + ++ ++  MPT    
Sbjct: 40  VVIDFTASWCGPSRIMAPVFADLAKKFPNAV-FLKVDVDEL-KPIAEQFSVEAMPTFLFM 97
Query: 160 KDGEMKSEVIGGHK 173
           K+G++K  V+G  K
Sbjct: 98  KEGDVKDRVVGAIK 111

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+G++ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGDVAATKVG 92

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A ++  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC  C  +KP    L+ ++ + + F  VDV+   +D+     +  MPT Q +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD-CQDVASECEVKCMPTFQFF 80
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+   E  G +K  L
Sbjct: 81  KKGQKVGEFSGANKEKL 97

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC  C  +KP    L+ ++ + + F  VDV+   +D+     +  MPT Q +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD-CQDVASEXEVKCMPTFQFF 80
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+   E  G +K  L
Sbjct: 81  KKGQKVGEFSGANKEKL 97

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 12/136 (8%)
Query: 30  SGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQI 89
           SG  +  +L+K  A  +  + ++ +   + VR E   PD + P  V L  +   ++ D++
Sbjct: 88  SGYPTIKILKKGQAVDYEGSRTQEEIVAK-VR-EVSQPDWTPPPEVTL--VLTKENFDEV 143
Query: 90  LLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK---LKFYYVDVNKVSKDLVK 146
           +  A      IL+++ A WC  C  L P+ EK A E   +   +    VD      DL K
Sbjct: 144 VNDADI----ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT-AETDLAK 198
Query: 147 RGNISKMPTIQIWKDG 162
           R ++S  PT++I++ G
Sbjct: 199 RFDVSGYPTLKIFRKG 214

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 90  LLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGN 149
           L +A E    +++D+ ASWC  C ++ P    LA +    L F  VD +++ K +     
Sbjct: 31  LQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL-FLKVDTDEL-KSVASDWA 88
Query: 150 ISKMPTIQIWKDGEMKSEVIGGHK 173
           I  MPT    K+G++  +V+G  K
Sbjct: 89  IQAMPTFMFLKEGKILDKVVGAKK 112

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC     +KP    L+ ++ + + F  VDV+  S+D+     +  MPT Q +
Sbjct: 23  VVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDD-SQDVASESEVKSMPTFQFF 80
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+   E  G +K  L
Sbjct: 81  KKGQKVGEFSGANKEKL 97

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC  C  +KP    L+ ++ + + F  VDV+  ++D+  +  I  +PT+ ++
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD-AQDVAPKYGIRGIPTLLLF 80
Query: 160 KDGEMKSEVIG 170
           K+GE+ +  +G
Sbjct: 81  KNGEVAATKVG 91

>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWC-RKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK 142
           D  D  +L+A      IL+D+ A WC R C  + P L+++A E+  KL    +++++   
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG 66
Query: 143 DLVKRGNISKMPTIQIWKDGEMKSEVIG 170
              K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  TAPKYG-IRGIPTLLLFKNGEVAATKVG 93

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           ++ID+ A+WC  C  + PKLE+L+    + + F  VDV++  +D+ +   I+ MPT    
Sbjct: 23  VVIDFYATWCGPCKMIAPKLEELSQSM-SDVVFLKVDVDE-CEDIAQDNQIACMPTFLFM 80
Query: 160 KDGEMKSEVIGGH 172
           K+G+    + G +
Sbjct: 81  KNGQKLDSLSGAN 93

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160
           L+D+ A+WC     + P LE+LAA+++ K     +DV++ +     +  +  +PT+ ++K
Sbjct: 24  LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDE-NPSTAAKYEVMSIPTLIVFK 82
Query: 161 DGEMKSEVIG 170
           DG+   +V+G
Sbjct: 83  DGQPVDKVVG 92

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 92  RAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           +A +  +P+L+D+ A+WC  C  + P LE+ A     K+    ++V++ + +   +  I 
Sbjct: 12  QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE-NPETTSQFGIM 70
Query: 152 KMPTIQIWKDGEMKSEVIG 170
            +PT+ ++K GE   ++IG
Sbjct: 71  SIPTLILFKGGEPVKQLIG 89

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
           +P ++D+ A WC  C  + P LE+L+ E+  K+  Y V+V+K   +L +   I  +PTI
Sbjct: 52  KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK-EPELARDFGIQSIPTI 109

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQI 158
           P+L+D+ A+WC  C  + P LE+ A     K+    ++V++ + +   +  I  +PT+ +
Sbjct: 19  PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE-NPETTSQFGIMSIPTLIL 77
Query: 159 WKDGEMKSEVIG 170
           +K GE   ++IG
Sbjct: 78  FKGGEPVKQLIG 89

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
           +P ++D+ A WC  C  + P LE+L+ E+  K+  Y V+V+K   +L +   I  +PTI
Sbjct: 52  KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK-EPELARDFGIQGIPTI 109

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +L D+ A WC     + P LE+L  E   KLK   +DV++  +   K G +S +PT+ + 
Sbjct: 20  VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMS-IPTLLVL 78
Query: 160 KDGEMKSEVIG 170
           KDGE+    +G
Sbjct: 79  KDGEVVETSVG 89

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160
           L+D+ A+ C  C  + P LE+LAA+++ K     +DV++ +     +  +  +PT+ ++K
Sbjct: 23  LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE-NPSTAAKYEVMSIPTLIVFK 81
Query: 161 DGEMKSEVIG 170
           DG+   +V+G
Sbjct: 82  DGQPVDKVVG 91

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 95  ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMP 154
           E  +P ++D+ A WC  C  + P L++LA E+D ++  Y VD  K  ++L     I  +P
Sbjct: 36  EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK-EQELAGAFGIRSIP 94
Query: 155 TI 156
           +I
Sbjct: 95  SI 96

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +L D+ A WC     + P LE+L  E   KLK   +DV++  +   K G +S +PT+ + 
Sbjct: 20  VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMS-IPTLLVL 78
Query: 160 KDGEMKSEVIG 170
           KDGE+    +G
Sbjct: 79  KDGEVVETSVG 89

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 10/90 (11%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---V 140
           D  D  L++A      IL+D+ A WC  C  + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDLVKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 SKDLVKRGNISKMPTIQIWKDGEMKSEVIG 170
           +   ++RG    +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYIERG----IPTLLLFKNGEVAATKVG 92

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 93  AQELS-QPI-LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI 150
           AQE++  P+ L+D+ A WC  C  + P LE+LA +   +LK   V+V++    L  R  +
Sbjct: 44  AQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDE-HPGLAARYGV 102
Query: 151 SKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIK 186
             +PT+ +++ G   +  +G     ++ E +R  ++
Sbjct: 103 RSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLE 138

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK---LKFYYVDVNKV 140
           D+ D ++  A      IL+++ A WC  C  L P+ EK A E   +   +    VD  + 
Sbjct: 15  DNFDDVVNNADI----ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQ 70
Query: 141 SKDLVKRGNISKMPTIQIWKDG 162
           + DL KR ++S  PT++I++ G
Sbjct: 71  T-DLAKRFDVSGYPTLKIFRKG 91

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC     + P L+++A E+  KL    +++++    
Sbjct: 30  DSFDTDVLKAD---GAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 86
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 87  APKYG-IRGIPTLLLFKNGEVAATKVG 112

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC  C  +   L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           ++ +Q +L++    +P+L+D+ A WC  C  + P +E+LA E++ K+K   V+V++    
Sbjct: 9   ENFEQEVLKS---DKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT 65
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIGGH 172
             + G I  +PT+ ++K+G++   ++G  
Sbjct: 66  AAQYG-IRSIPTLLLFKNGQVVDRLVGAQ 93

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC  C  +KP    L+ ++ + + F  VDV+   +D+     +   PT Q +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDC-QDVASECEVKCTPTFQFF 80
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+   E  G +K  L
Sbjct: 81  KKGQKVGEFSGANKEKL 97

>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC     +KP    L+ ++ + + F  VDV+   +D+     + +MPT Q +
Sbjct: 23  VVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDDC-QDVASECEVKRMPTFQFF 80
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+   E  G +K  L
Sbjct: 81  KKGQKVGEFSGANKEKL 97

>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC     + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 89  ILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRG 148
           IL RA+    P+L+D+ A WC  C  + P+ +  AA    +++   +D  +    +  R 
Sbjct: 56  ILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKID-TQAHPAVAGRH 114
Query: 149 NISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVR 182
            I  +P   ++  G   +   G   A  ++  VR
Sbjct: 115 RIQGIPAFILFHKGRELARAAGARPASELVGFVR 148

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +L+++ A WC  C  L P+ E  A      +    VD    +    K G +S  PT++I+
Sbjct: 24  MLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYG-VSGYPTLKIF 82
Query: 160 KDGEMKSEVIGGHKAWLVIEEVRE 183
           +DGE      G   A  ++  +++
Sbjct: 83  RDGEEAGAYDGPRTADGIVSHLKK 106

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           ++DS   DQ +L+A  L   +L+D+ A WC  C  + P L ++  EF  K+    V+++ 
Sbjct: 7   VSDS-SFDQDVLKASGL---VLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDD 62
Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG-----HKAWL 176
            + +      +  +PT+ + +DG++  + +G       KAW+
Sbjct: 63  -NPETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWV 103

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 92  RAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
           +A +  +P+L+D+ A+WC  C  + P LE+ A     K+    ++V++ + +   +  I 
Sbjct: 12  QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE-NPETTSQFGIM 70
Query: 152 KMPTIQIWKDGEMKSEVIG 170
            +PT+ ++K G    ++IG
Sbjct: 71  SIPTLILFKGGRPVKQLIG 89

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQI 158
           P+L+D+ A+WC  C  + P LE+ A     K+    ++V++ + +   +  I  +PT+ +
Sbjct: 19  PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE-NPETTSQFGIMSIPTLIL 77
Query: 159 WKDGEMKSEVIG 170
           +K G    ++IG
Sbjct: 78  FKGGRPVKQLIG 89

>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC     +KP    L+ ++ + + F  VDV+   +D+     +  MPT Q +
Sbjct: 34  VVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDDC-QDVASECEVKSMPTFQFF 91
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+   E  G +K  L
Sbjct: 92  KKGQKVGEFSGANKEKL 108

>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa (Caca) Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
           D  D  +L+A      IL+D+ A WC     + P L+++A E+  KL    +++++    
Sbjct: 10  DSFDTDVLKAD---GAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISKMPTIQIWKDGEMKSEVIG 170
             K G I  +PT+ ++K+GE+ +  +G
Sbjct: 67  APKYG-IRGIPTLLLFKNGEVAATKVG 92

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159
           +++D+ A+WC     +KP    L+ ++ + + F  VDV+  ++D+     +   PT Q +
Sbjct: 23  VVVDFSATWCGPAKMIKPFFHSLSEKY-SNVIFLEVDVDD-AQDVASEAEVKATPTFQFF 80
Query: 160 KDGEMKSEVIGGHKAWL 176
           K G+   E  G +K  L
Sbjct: 81  KKGQKVGEFSGANKEKL 97

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEK----LAAEF--DTKLKFYYV 135
           D++++D+IL  A       L+++ A WCR    L P  E+    +  EF  + ++ F  V
Sbjct: 11  DTENIDEILNNADV----ALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARV 66
Query: 136 DVNKVSKDLVKRGNISKMPTIQIWKDG 162
           D ++ S D+ +R  ISK PT++++++G
Sbjct: 67  DCDQHS-DIAQRYRISKYPTLKLFRNG 92

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQI 158
           P +ID+ A WC  C    P   + AAE   K++F  V+  +    L  R  I  +PTI +
Sbjct: 57  PXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNT-EAEPALSTRFRIRSIPTIXL 115
Query: 159 WKDGEMKSEVIGG 171
           +++G+    + G 
Sbjct: 116 YRNGKXIDXLNGA 128

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 84  DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF----DTKLKFYYVDVNK 139
           D  D+ +L ++++    ++++ A WC  C  L+P+    A+E       K+K   VD   
Sbjct: 15  DSFDKNVLDSEDV---WMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDAT- 70
Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG 171
           V++ L  R  I   PTI+I++ GE   +  GG
Sbjct: 71  VNQVLASRYGIRGFPTIKIFQKGESPVDYDGG 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	2e-23
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	4e-22
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	5e-22
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	3e-21
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	4e-21
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	5e-21
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	6e-21
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	1e-20
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	3e-20
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	5e-20
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	7e-20
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	3e-19
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	1e-18
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	2e-18
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	3e-18
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	6e-18
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	8e-18
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	1e-17
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	1e-17
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	1e-17
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	8e-17
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	1e-16
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	2e-16
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	4e-16
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	2e-15
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	3e-13
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	5e-13
2l57_A	126	Uncharacterized protein; structural genomics, unkn	8e-13
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	1e-12
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	3e-12
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	8e-12
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	1e-11
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	2e-11
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	6e-11
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	7e-11
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	8e-11
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	1e-10
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	2e-10
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	2e-10
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	2e-10
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-10
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	2e-10
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	3e-10
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	9e-07
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	3e-10
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	3e-10
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	3e-10
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	4e-10
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	6e-10
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	6e-10
2kuc_A	130	Putative disulphide-isomerase; structural genomics	7e-10
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	7e-10
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	8e-10
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	8e-10
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	8e-10
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	9e-10
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	1e-09
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	2e-09
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	2e-09
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	8e-08
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	2e-09
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	2e-09
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	4e-09
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	4e-09
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-09
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	8e-09
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-08
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	1e-08
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	1e-08
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	2e-08
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	2e-08
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	4e-08
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	5e-08
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	6e-08
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	7e-07
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	2e-07
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	2e-07
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	3e-07
1mek_A	120	Protein disulfide isomerase; electron transport, r	3e-07
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	4e-07
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	6e-07
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	6e-07
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	7e-07
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	9e-07
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	1e-06
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	2e-06
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	2e-06
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	3e-06
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	3e-06
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	3e-06
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	4e-06
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	5e-06
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	8e-06
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	9e-06
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	9e-06
2qsi_A	137	Putative hydrogenase expression/formation protein;	2e-05
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	3e-05
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	6e-05
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	6e-05
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	2e-04
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	5e-04
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	8e-04

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 88.9 bits (221), Expect = 2e-23
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 6/110 (5%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           I+     D  L + +E  +PI++D+ A+WC  C  + P  E L+ ++  K+ F  VDV+ 
Sbjct: 7   IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA 66

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           V   + +   I+ MPT  ++KDG    +++G  +     ++++ ++ K  
Sbjct: 67  V-AAVAEAAGITAMPTFHVYKDGVKADDLVGASQ-----DKLKALVAKHA 110

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 85.5 bits (212), Expect = 4e-22
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
            +     D  +   ++  + ++ID+ ASWC  C  + P   + A +F     F  VDV++
Sbjct: 11  CHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGA-IFLKVDVDE 69

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           + KD+ +  N+  MPT    KDGE    V+GG K     +++   I   +
Sbjct: 70  L-KDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRK-----DDIHTKIVALM 113

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 85.5 bits (212), Expect = 5e-22
 Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
            ++ D  D  + +A+E  + ++ID+ ASWC  C ++ P   + A +F     F  VDV++
Sbjct: 19  CHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA-VFLKVDVDE 77

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           + K++ ++ N+  MPT    KDG    +V+G  K     ++++  I K V
Sbjct: 78  L-KEVAEKYNVEAMPTFLFIKDGAEADKVVGARK-----DDLQNTIVKHV 121

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 83.2 bits (206), Expect = 3e-21
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 7/110 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           ++  +     +  A    + ++ID+ ASWC  C  + P    LA +F     F  VDV++
Sbjct: 17  VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNA-VFLKVDVDE 75

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           + K + ++ ++  MPT    K+G++K  V+G  K     EE+   +    
Sbjct: 76  L-KPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIK-----EELTAKVGLHA 119

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 82.8 bits (205), Expect = 4e-21
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
            +  +  ++ L +A E    +++D+ ASWC  C ++ P    LA +    + F  VD ++
Sbjct: 21  CHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDE 79

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           + K +     I  MPT    K+G++  +V+G  K     +E++  I K +
Sbjct: 80  L-KSVASDWAIQAMPTFMFLKEGKILDKVVGAKK-----DELQSTIAKHL 123

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 83.3 bits (206), Expect = 5e-21
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           I   +  DQ L  A    + +L ++ A WC     + P   +L+  +   L F  +DV++
Sbjct: 29  ITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDE 87

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           +  D      I   PT    +DG+   +++G +K      E+ + I   +
Sbjct: 88  L-SDFSASWEIKATPTFFFLRDGQQVDKLVGANK-----PELHKKITAIL 131

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 82.4 bits (204), Expect = 6e-21
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           I       + L  A +  + +++D+ A+WC     +KP    L+ ++ + + F  VDV+ 
Sbjct: 16  IESKTAFQEALDAAGD--KLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDD 72

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
             +D+     +  MPT Q +K G+   E  G +K     E++   I + V
Sbjct: 73  C-QDVASECEVKSMPTFQFFKKGQKVGEFSGANK-----EKLEATINELV 116

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 81.2 bits (201), Expect = 1e-20
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           I       + L  A +  + +++D+ A+WC  C  +KP    L+ ++ + + F  VDV+ 
Sbjct: 5   IESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
             +D+     +  MPT Q +K G+   E  G +K     E++   I + V
Sbjct: 62  C-QDVASESEVKSMPTFQFFKKGQKVGEFSGANK-----EKLEATINELV 105

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 80.0 bits (198), Expect = 3e-20
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +         L  A    +  ++ +    C  C+ + P    ++ ++  +  F  VDV++
Sbjct: 6   VGSDPDFQPELSGAGS--RLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQ 62

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
             +      NIS  PT Q +++     +  G          + E IK+ +
Sbjct: 63  C-QGTAATNNISATPTFQFFRNKVRIDQYQGADA-----VGLEEKIKQHL 106

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 79.6 bits (197), Expect = 5e-20
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 8/108 (7%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           + D   LD  L +A    + +++D+ A+WC  C  + PKL +L+ +F   +    VDV++
Sbjct: 5   VKDKADLDGQLTKASG--KLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 62

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
             +D+    NIS MPT    K+G    E  G +      + + ++IK 
Sbjct: 63  -CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANA-----KRLEDVIKA 104

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 79.3 bits (196), Expect = 7e-20
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
            +  D   +   + +   + I++D+ ASWC  C  + P   +LA +F   + F  VDV++
Sbjct: 9   CHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDE 67

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           + K + +  N+  MPT    KDG++  + +G  K     + +  ++ K  
Sbjct: 68  L-KAVAEEWNVEAMPTFIFLKDGKLVDKTVGADK-----DGLPTLVAKHA 111

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 77.8 bits (192), Expect = 3e-19
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 10/110 (9%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +     L+ +L + +   + +++D+ A+WC  C  + P  ++L+ ++D    F  VDV+K
Sbjct: 18  LKQDGDLESLLEQHKN--KLVVVDFFATWCGPCKTIAPLFKELSEKYD--AIFVKVDVDK 73

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
             ++  ++ NIS MPT    K+GE   +V+G         +V +MIKKF+
Sbjct: 74  -LEETARKYNISAMPTFIAIKNGEKVGDVVGASI-----AKVEDMIKKFI 117

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 76.1 bits (188), Expect = 1e-18
 Identities = 27/108 (25%), Positives = 58/108 (53%), Gaps = 9/108 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +  +  L++++   +   + I++D+ A WC  C  + PK+E LA E   +++F  VDV++
Sbjct: 4   LATAADLEKLINENKG--RLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQ 60

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
            +++   + +++ MPT    KDG+      G ++      ++RE I +
Sbjct: 61  -NEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANE-----TKLRETITR 102

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 75.8 bits (187), Expect = 2e-18
 Identities = 25/109 (22%), Positives = 58/109 (53%), Gaps = 11/109 (10%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +      D I+      ++ +++D+ A WC  C  + P  E+ +  +  K+ F  VDV++
Sbjct: 13  VTSQAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDE 67

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188
           V  ++ ++ NI+ MPT +++K+G     ++G +        ++++I+K+
Sbjct: 68  V-SEVTEKENITSMPTFKVYKNGSSVDTLLGAND-----SALKQLIEKY 110

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 75.5 bits (186), Expect = 3e-18
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 11/110 (10%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +   +    I+          +  + A WC  C  ++  +EK+A EF   +KF  VD + 
Sbjct: 24  VYSVEQFRNIM----SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADN 78

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
            S ++V +  + ++PT  I + G+M   VIG +        +R+ ++  +
Sbjct: 79  NS-EIVSKCRVLQLPTFIIARSGKMLGHVIGANP-----GMLRQKLRDII 122

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 74.7 bits (184), Expect = 6e-18
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           + +      ++    + +  ++ID+ A+WC  C  ++P L KL   +   ++F   DV++
Sbjct: 17  LTNLTEFRNLI----KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAY-PDVRFVKCDVDE 71

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188
              D+ K   ++ MPT  + KDG++  ++IG +        + + IK  
Sbjct: 72  S-PDIAKECEVTAMPTFVLGKDGQLIGKIIGANP-----TALEKGIKDL 114

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 74.3 bits (183), Expect = 8e-18
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +N       I+  A +  +P+++D    WC     + PK EKLA E+     F  +D N+
Sbjct: 10  VNKDT-FWPIVKAAGD--KPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDV-IFLKLDCNQ 65

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
            +K L K   I  +PT +I K+  +  EV G        +++ E I+ 
Sbjct: 66  ENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY-----DKLLEAIQA 108

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 73.9 bits (182), Expect = 1e-17
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVN 138
           IND +     L       + I++ +  SW   C  LK   E ++ E  ++ + F  +D +
Sbjct: 5   INDQEQFTY-LTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD 63

Query: 139 KVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           +   ++ +   IS +P   I   G +  E+ G        +E   +++   
Sbjct: 64  EN-SEISELFEISAVPYFIIIHKGTILKELSGADP-----KEYVSLLEDCK 108

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 74.0 bits (182), Expect = 1e-17
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +N       I+  A +  +P+++D    WC  C  + PK EKLA E+     F  +D N+
Sbjct: 23  VNKDT-FWPIVKAAGD--KPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDV-IFLKLDCNQ 78

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
            +K L K   I  +PT +I K+  +  EV G        +++ E I+ 
Sbjct: 79  ENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY-----DKLLEAIQA 121

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 74.5 bits (183), Expect = 1e-17
 Identities = 17/110 (15%), Positives = 49/110 (44%), Gaps = 9/110 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +  +   +++L    +    +++ + A W  +C  +   + +LA E   ++ F  ++   
Sbjct: 17  VGSAGQFEELLRLKAK--SLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEG 73

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           V  ++ ++  IS +PT   +K+ +    + G H       E+ + +++  
Sbjct: 74  V-PEVSEKYEISSVPTFLFFKNSQKIDRLDGAHA-----PELTKKVQRHA 117

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 71.6 bits (176), Expect = 8e-17
 Identities = 23/108 (21%), Positives = 57/108 (52%), Gaps = 11/108 (10%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
              +   D  +       + +++D+ A+WC  C  + P +EK + ++  +  FY +DV++
Sbjct: 11  FKTASEFDSAI----AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDE 65

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
           +  D+ ++  +S MPT+ ++K+G+  ++V+G +        +++ I  
Sbjct: 66  LG-DVAQKNEVSAMPTLLLFKNGKEVAKVVGANP-----AAIKQAIAA 107

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 71.2 bits (175), Expect = 1e-16
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 11/111 (9%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVN 138
           I+  D   Q+        + ++ID+ A+WC  C  + P  EK++      K+ FY VDV+
Sbjct: 20  ISSYDQFKQVT----GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD 75

Query: 139 KVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           + S  + +   I  MPT   +K+G+    V+G         +++  I +  
Sbjct: 76  EQS-QIAQEVGIRAMPTFVFFKNGQKIDTVVGADP-----SKLQAAITQHS 120

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 70.9 bits (174), Expect = 2e-16
 Identities = 20/113 (17%), Positives = 47/113 (41%), Gaps = 14/113 (12%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           + ++  L+Q+    Q     I+I + A WC+ C  +K   +     +   +    +DV+ 
Sbjct: 25  LKNTGSLNQVFSSTQN--SSIVIKFGAVWCKPCNKIKEYFKNQLNYYY--VTLVDIDVDI 80

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKS----EVIGGHKAWLVIEEVREMIKKF 188
               L  + NI  +PT + + +   +      V G ++      ++ +  +K+
Sbjct: 81  H-PKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQ-----NDIEKAFQKY 127

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 69.6 bits (171), Expect = 4e-16
 Identities = 14/111 (12%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 78  EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
                 + L   +    E  Q +L+      C  C  +  K+  +   ++  ++   + +
Sbjct: 3   NTFKTIEELATYI----EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILL 57

Query: 138 NKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188
               +++  R  +   PT+ ++ +G+               E +   I+ F
Sbjct: 58  QD-MQEIAGRYAVFTGPTVLLFYNGKEILRESRFISL----ENLERTIQLF 103

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 68.8 bits (168), Expect = 2e-15
 Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 74  SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFY 133
           S  L  +     +DQ +    E  + +++ +       C+ L   L K +++       Y
Sbjct: 2   SFLLPKLTSKKEVDQAIKSTAE--KVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIY 59

Query: 134 YVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG---HKAWLVIEEVREMI 185
            VDV++      +  +IS +P+   + +G+      G     K     +  ++ I
Sbjct: 60  LVDVDQT-AVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFI 113

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 62.0 bits (151), Expect = 3e-13
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
                 L++I     E    +L+D+ A+WC  C  L   L  +A      + F  VDV+K
Sbjct: 10  GTHEALLNRIK----EAPGLVLVDFFATWCGPCQRLGQILPSIAEANK-DVTFIKVDVDK 64

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188
            + +      +S +P +   K    + + +        +  ++  I+KF
Sbjct: 65  -NGNAADAYGVSSIPALFFVKKEGNEIKTLDQ-FVGADVSRIKADIEKF 111

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 61.7 bits (150), Expect = 5e-13
 Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 76  ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
           EL  I+ + +++++    +++   ++I    S    C+ +   L  LA +F  + KF   
Sbjct: 4   ELREISGNQYVNEVTNAEEDV--WVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKA 60

Query: 136 DVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIG 170
            VN   +      + + +PTI ++K+G+++++ IG
Sbjct: 61  IVNSCIQHY----HDNCLPTIFVYKNGQIEAKFIG 91

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 61.3 bits (149), Expect = 8e-13
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 69  LSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128
           L     +  + IN  ++L+       +   P +I +    C  C+ ++ +L  ++ E + 
Sbjct: 3   LEGIKQINFQSINVVENLE-----EAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG 57

Query: 129 KLKFYYVDVNKVS-KDLVKRGNISKMPT-IQIWKDGEMKSEVIGGHKAWLVIEEVREMIK 186
           K   YY  + +    DL  + + + +PT + + K+G       G  +       +  ++ 
Sbjct: 58  KFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRK----NNIETILN 113

Query: 187 KF 188
             
Sbjct: 114 SL 115

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 61.0 bits (148), Expect = 1e-12
 Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 76  ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
           EL  I+ + +++++    ++L   ++I    S    C+ +   L  LA +F  + KF   
Sbjct: 11  ELREISGNQYVNEVTNAEKDL--WVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKA 67

Query: 136 DVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIG 170
            VN   +      + + +PTI ++K+G+++ + IG
Sbjct: 68  IVNSCIEHY----HDNCLPTIFVYKNGQIEGKFIG 98

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 60.2 bits (146), Expect = 3e-12
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 67  PDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126
               R  +   +P+  S  +D  + R  +    IL+        +       + +L  EF
Sbjct: 9   ALWQRLLTRGWQPVEAST-VDDWIKRVGD--GVILLSSDPRRTPEVSDNPVMIAELLREF 65

Query: 127 -DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185
                +    D+ + S+ +  R N+ + P   ++ DG+++  + G H    ++  +R ++
Sbjct: 66  PQFDWQVAVADLEQ-SEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIV 124

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 58.5 bits (142), Expect = 8e-12
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            +  L+ +    C  C  + P LE+L   ++    FYYVDV +  K L +R ++  +P I
Sbjct: 22  GKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE-EKTLFQRFSLKGVPQI 80

Query: 157 QIWKDGEMKSEVIG 170
             +KDGE K ++ G
Sbjct: 81  LYFKDGEYKGKMAG 94

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 58.6 bits (142), Expect = 1e-11
 Identities = 17/98 (17%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 94  QELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY--VDVNKV----SKDLVKR 147
           Q L    ++   +  C  C    P+L + + E D  +  +     + +     ++  + +
Sbjct: 28  QLLQGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNK 87

Query: 148 GNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185
             +   PT+  +K+G +  +++G     L +E+ RE+ 
Sbjct: 88  AGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIY 125

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            +P ++D+ A WC  C  + P L++LA E+D ++  Y VD  K  ++L     I  +P+I
Sbjct: 38  DKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK-EQELAGAFGIRSIPSI 96

Query: 157 QIWKDGEMKSEVIG 170
                        G
Sbjct: 97  LFIPMEGKPEMAQG 110

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 56.8 bits (137), Expect = 6e-11
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            +P ++D+ A WC  C  + P LE+L+ E+  K+  Y V+V+K   +L +   I  +PTI
Sbjct: 51  DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK-EPELARDFGIQSIPTI 109

Query: 157 QIWKDGEMKSEVIG 170
                       +G
Sbjct: 110 WFVPMKGEPQVNMG 123

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 55.8 bits (135), Expect = 7e-11
 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 96  LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT 155
            S   L+D+ A+ C  C  + P LE+LAA+++ K     +DV++ +     +  +  +PT
Sbjct: 18  ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE-NPSTAAKYEVMSIPT 76

Query: 156 IQIWKDGEMKSEVIG 170
           + ++KDG+   +V+G
Sbjct: 77  LIVFKDGQPVDKVVG 91

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 56.7 bits (137), Expect = 8e-11
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
             P++ID+ A WC  C    P   + AAE   K++F  V+       L  R  I  +PTI
Sbjct: 55  DLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA-EPALSTRFRIRSIPTI 113

Query: 157 QIWKDGEMKSEVIG 170
            ++++G+M   + G
Sbjct: 114 MLYRNGKMIDMLNG 127

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 55.0 bits (133), Expect = 1e-10
 Identities = 17/74 (22%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
           ++ +L+D  A WC  C   +P  +K+A ++  K  F  ++V++ ++ +  + ++  +PT 
Sbjct: 21  NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDE-NQKIADKYSVLNIPTT 79

Query: 157 QIWKDGEMKSEVIG 170
            I+ +G++   ++G
Sbjct: 80  LIFVNGQLVDSLVG 93

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
           +   L+D+ A WC  C  + P LE+LA +   +LK   V+V++    L  R  +  +PT+
Sbjct: 50  APLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDE-HPGLAARYGVRSVPTL 108

Query: 157 QIWKDGEMKSEVIG 170
            +++ G   +  +G
Sbjct: 109 VLFRRGAPVATWVG 122

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
               ++ +  + C  C  ++  L+K  A    ++    VD      +L+K     ++PT+
Sbjct: 19  LSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEA-RPELMKELGFERVPTL 76

Query: 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
              +DG++     G         E++ +   
Sbjct: 77  VFIRDGKVAKVFSGIMNP----RELQALYAS 103

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 53.8 bits (130), Expect = 2e-10
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 96  LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT 155
           +S+  +  + +  C  C   K  +E++A E    ++  Y++V + +        I  +PT
Sbjct: 1   MSKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME-NPQKAMEYGIMAVPT 59

Query: 156 IQIWKDGEM 164
           I I  D E 
Sbjct: 60  IVINGDVEF 68

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
               ++D+ A WC  C    P+ E LA     K++   VD         ++  I   P++
Sbjct: 21  KTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQ-AYPQTCQKAGIKAYPSV 79

Query: 157 QIWKDGEMKSEVIG 170
           ++++    K  +  
Sbjct: 80  KLYQYERAKKSIWE 93

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           I D       ++ +     P+++D+ A WC  C  L P+LEK+ A+   K+    VD++ 
Sbjct: 17  IQDGPDFQDRVVNS---ETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD 73

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIG 170
              DL     +S +PT+   K+G++  + +G
Sbjct: 74  -HTDLAIEYEVSAVPTVLAMKNGDVVDKFVG 103

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 57.2 bits (137), Expect = 3e-10
 Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 2/108 (1%)

Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141
             D+ +  +      +  +L+++ A WC     L P+ E  A      +    VD    +
Sbjct: 7   TDDNFESRISDTGS-AGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTA-N 64

Query: 142 KDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
            +   +  +S  PT++I++DGE      G   A  ++  +++      
Sbjct: 65  TNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPAS 112

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 47.2 bits (111), Expect = 9e-07
 Identities = 14/72 (19%), Positives = 30/72 (41%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
           ++ +LI++ A WC  C  L+PK ++L  +           ++  + D+     +   PTI
Sbjct: 370 NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTI 429

Query: 157 QIWKDGEMKSEV 168
                 +  +  
Sbjct: 430 YFSPANKKLNPK 441

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 54.3 bits (131), Expect = 3e-10
 Identities = 18/91 (19%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
            N S+ ++ +       +  I++ + A WC+ C     +++KL   +  ++    VD++K
Sbjct: 29  QNGSNIINGVN----MKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDK 84

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIG 170
            ++ L ++ ++  +PTI + K+  M +    
Sbjct: 85  -NESLARKFSVKSLPTIILLKNKTMLARKDH 114

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 53.8 bits (130), Expect = 3e-10
 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
             P+++D+ A WC  C  + P +++LA E+  K+  Y ++ ++ +  +  + NI  +PT+
Sbjct: 18  EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE-APGIATQYNIRSIPTV 76

Query: 157 QIWKDGEMKSEVIG 170
             +K+GE K  +IG
Sbjct: 77  LFFKNGERKESIIG 90

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 53.9 bits (130), Expect = 3e-10
 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
              +L+D+ A WC  C  + P LE++A E++ KL    +DV++ +     R  +  +PT+
Sbjct: 18  HPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE-NPKTAMRYRVMSIPTV 76

Query: 157 QIWKDGEMKSEVIG 170
            ++KDG+    ++G
Sbjct: 77  ILFKDGQPVEVLVG 90

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 17/92 (18%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            +P+++ + +  C  C  ++P  E+ A E+ +   F  +++   +    ++  +   PT 
Sbjct: 24  KKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIAT-NPWTAEKYGVQGTPTF 82

Query: 157 QIWKDGEMKSEVIGGH-KAWLVIEEVREMIKK 187
           + +  G    E +G    + L    VR+M++ 
Sbjct: 83  KFFCHGRPVWEQVGQIYPSILK-NAVRDMLQH 113

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 53.4 bits (129), Expect = 6e-10
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
              +L D+ A WC     + P LE+L  E   KLK   +DV++ +++   +  +  +PT+
Sbjct: 17  EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE-NQETAGKYGVMSIPTL 75

Query: 157 QIWKDGEMKSEVIGGH-----KAWL 176
            + KDGE+    +G       +  +
Sbjct: 76  LVLKDGEVVETSVGFKPKEALQELV 100

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 54.4 bits (131), Expect = 6e-10
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
             P+L+D+ A WC  C  + P+ +  AA    +++   +D       +  R  I  +P  
Sbjct: 64  DLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQA-HPAVAGRHRIQGIPAF 122

Query: 157 QIWKDGEMKSEVIG 170
            ++  G   +   G
Sbjct: 123 ILFHKGRELARAAG 136

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 53.6 bits (129), Expect = 7e-10
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVD 136
             +     + L RA+   + + +D   +WC  C  L   +     +A  F+       +D
Sbjct: 11  FRELS-FPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMD 69

Query: 137 VNKV-SKDLVKRGNISKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           + K    +L K+  +   PT+      GE+   ++G   A     E+ + +K  V
Sbjct: 70  MEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDA----PELLKKVKLGV 120

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 53.1 bits (128), Expect = 7e-10
 Identities = 19/74 (25%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            +P+L+D+ A+WC  C  + P LE +AAE+  K++   +++++ +     +  +  +PT+
Sbjct: 23  DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDE-NPGTAAKYGVMSIPTL 81

Query: 157 QIWKDGEMKSEVIG 170
            +++ GE+   ++G
Sbjct: 82  NVYQGGEVAKTIVG 95

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 53.0 bits (128), Expect = 8e-10
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
           S P+L+D+ A WC  C  + P ++++A E+  KLK   ++ ++ S ++     I  +PTI
Sbjct: 19  SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE-SPNVASEYGIRSIPTI 77

Query: 157 QIWKDGEMKSEVIG 170
            ++K G+    +IG
Sbjct: 78  MVFKGGKKCETIIG 91

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 52.7 bits (127), Expect = 8e-10
 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            +  ++D+ A WC  C+ L P +E+LA ++  ++ F  ++ ++ + D+  R  +  +PT+
Sbjct: 16  HEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDE-NPDIAARYGVMSLPTV 73

Query: 157 QIWKDGEMKSEVIG 170
             +KDGE   E+IG
Sbjct: 74  IFFKDGEPVDEIIG 87

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 52.7 bits (127), Expect = 8e-10
 Identities = 22/74 (29%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            +P+L+D+ A WC  C  + P +E+LA E++ K+K   V+V++ + +   +  I  +PT+
Sbjct: 19  DKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDE-NPNTAAQYGIRSIPTL 77

Query: 157 QIWKDGEMKSEVIG 170
            ++K+G++   ++G
Sbjct: 78  LLFKNGQVVDRLVG 91

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 53.1 bits (128), Expect = 9e-10
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 66  WPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE 125
           W  ++         + D+     +L      ++P+L+D+ A+WC  C  + P LE++A E
Sbjct: 3   WGSMTDSEKSATIKVTDASFATDVL----SSNKPVLVDFWATWCGPCKMVAPVLEEIATE 58

Query: 126 FDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIG 170
             T L    +DV+  + +  +   +  +PT+ ++KDG+    ++G
Sbjct: 59  RATDLTVAKLDVDT-NPETARNFQVVSIPTLILFKDGQPVKRIVG 102

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
             P+L+D+ A+WC  C  + P LE+ A     K+    ++V++ + +   +  I  +PT+
Sbjct: 17  DGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE-NPETTSQFGIMSIPTL 75

Query: 157 QIWKDGEMKSEVIG 170
            ++K G    ++IG
Sbjct: 76  ILFKGGRPVKQLIG 89

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
           S  +L+D+ A WC  C  + P L ++  EF  K+    V+++  + +      +  +PT+
Sbjct: 20  SGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDD-NPETPNAYQVRSIPTL 78

Query: 157 QIWKDGEMKSEVIG 170
            + +DG++  + +G
Sbjct: 79  MLVRDGKVIDKKVG 92

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKVSKDLVKRGNISKM 153
              +L+++ A WC  C    P+ EK+A      D  +    +D    +  L  R ++S  
Sbjct: 32  KDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS-ASVLASRFDVSGY 90

Query: 154 PTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
           PTI+I K G+   +  G      ++ +VRE+ + 
Sbjct: 91  PTIKILKKGQAV-DYEGSRTQEEIVAKVREVSQP 123

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 49.5 bits (118), Expect = 8e-08
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKVSKDLVKRGNISKMP 154
             IL+++ A WC  C  L P+ EK A E       +    VD      DL KR ++S  P
Sbjct: 148 DIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA-ETDLAKRFDVSGYP 206

Query: 155 TIQIWKDGE 163
           T++I++ G 
Sbjct: 207 TLKIFRKGR 215

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            QP+L+ + ASWC  C  + P +   A  +  +LK   ++++  +   VK+  +  +P +
Sbjct: 25  EQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP-NPTTVKKYKVEGVPAL 83

Query: 157 QIWKDGEMKSEVIG 170
           ++ K  ++     G
Sbjct: 84  RLVKGEQILDSTEG 97

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
              IL+D+ A WC     + P L+++A E+  KL    +++++ +     +  I  +PT+
Sbjct: 40  DGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQ-NPGTAPKYGIRGIPTL 98

Query: 157 QIWKDGEMKSEVIG 170
            ++K+GE+ +  +G
Sbjct: 99  LLFKNGEVAATKVG 112

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
              IL+D+ A WC  C  + P L+++A E+  KL    +++++ +     +  I  +PT+
Sbjct: 20  DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ-NPGTAPKYGIRGIPTL 78

Query: 157 QIWKDGEMKSEVIG 170
            ++K+GE+ +  +G
Sbjct: 79  LLFKNGEVAATKVG 92

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 51.8 bits (124), Expect = 4e-09
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 24/124 (19%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVN 138
            ND   +D+ L R + +    ++++ A+W   C    P    L+ +++ T L F  VDV 
Sbjct: 12  FNDKT-IDEELERDKRV--TWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVG 68

Query: 139 K---------VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGH-----KAWLVIEEVREM 184
           +         VS   + +     +PT+ +++ G+               +W   EE   +
Sbjct: 69  RYTDVSTRYKVSTSPLTKQ----LPTLILFQGGKEAMRRPQIDKKGRAVSWTFSEE--NV 122

Query: 185 IKKF 188
           I++F
Sbjct: 123 IREF 126

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 54.0 bits (129), Expect = 5e-09
 Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 68  DLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127
           DL  P+ V L P   ++ + Q     ++  +  ++D+ + W      L P+ +++A    
Sbjct: 539 DLRNPSVVSLTPSTFNELVKQ-----RKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT 593

Query: 128 TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
             +    VD  +       + N+ + P I+ +     K+     +  W         ++ 
Sbjct: 594 GLINVGSVDCGQ-YHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDA---YSLRS 649

Query: 188 FV 189
           + 
Sbjct: 650 WG 651

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 53.2 bits (127), Expect = 8e-09
 Identities = 13/92 (14%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157
           +   +++ +        L P   + A E D  L+   V+     + L +   ++  P++ 
Sbjct: 134 ELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGD-DRMLCRMKGVNSYPSLF 192

Query: 158 IWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           I++ G    +  G      ++    + ++  V
Sbjct: 193 IFRSGMAAVKYNGDRSKESLVAFAMQHVRSTV 224

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            +P L+D+ A W      L P+L K +     +LK   +D     + L    NI   PT 
Sbjct: 455 KEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTI-HEGLCNMYNIQAYPTT 513

Query: 157 QIWKDGEMK 165
            ++    + 
Sbjct: 514 VVFNQSSIH 522

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 51.3 bits (122), Expect = 4e-08
 Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 7/127 (5%)

Query: 47  VDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMA 106
                      RD      W     P +     +      +++L    +     ++D+ A
Sbjct: 631 AYQYHSYNGWNRDAYSLRSWGLGFLPQASI--DLTPQTFNEKVL----QGKTHWVVDFYA 684

Query: 107 SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKS 166
            W        P+ E LA     K++   VD         ++  I   P++++++    K 
Sbjct: 685 PWSGPSQNFAPEFELLARMIKGKVRAGKVDCQA-YPQTCQKAGIKAYPSVKLYQYERAKK 743

Query: 167 EVIGGHK 173
            +     
Sbjct: 744 SIWEEQI 750

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 76  ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
            +  +   +   + + + Q+    I++       + C  L   L  LAAE+   +KF  +
Sbjct: 113 FVYELESGEQFLETIEKEQK-ITTIVVHIYEDGIKGCDALNSSLICLAAEY-PMVKFCKI 170

Query: 136 DVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIG 170
             +        R +   +PT+ ++K GE+ S  I 
Sbjct: 171 KASNT--GAGDRFSSDVLPTLLVYKGGELLSNFIS 203

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 86  LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV 145
           L+     A     P+++    SWC  C  LKPK  +     +    F  V++    +   
Sbjct: 35  LEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKD 94

Query: 146 KR--GNISKMPTIQIW-KDGEMKSEVIGGHK 173
           +    +   +P I      G++  E+I  + 
Sbjct: 95  EDFSPDGGYIPRILFLDPSGKVHPEIINENG 125

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
              IL+D+ A WC  C  + P L+++A E+  KL    +++++      K G I  +PT+
Sbjct: 30  DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTL 88

Query: 157 QIWKDGEMKSEVIG 170
            ++K+GE+ +  +G
Sbjct: 89  LLFKNGEVAATKVG 102

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 18/89 (20%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141
           +  +L Q+L ++     P+L  + +   + C+ L P LE LAA+++ +     +D +   
Sbjct: 13  NESNLQQVLEQSMT--TPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDA-E 69

Query: 142 KDLVKRGNISKMPTIQIWKDGEMKSEVIG 170
           + +  +  +  +PT+ ++++G+      G
Sbjct: 70  QMIAAQFGLRAIPTVYLFQNGQPVDGFQG 98

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 73  TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKF 132
           T +    I   D L+Q L+ A+   +P+++D  A WC  C   +                
Sbjct: 9   THLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADT 66

Query: 133 YYVDV-----NKVSKDLVKRGNISKMPTIQIW-KDGEMKSE--VIGGHKA 174
             +       +     L+K  N+  +PTI  +   G+   +  V G   A
Sbjct: 67  VLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDA 116

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 50.5 bits (120), Expect = 5e-08
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPTIQ 157
             L+++ A WC  C  L     K A   D  ++   V+ +    K L  + +++  PT+ 
Sbjct: 37  TSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLM 96

Query: 158 IWKDGEMKSEVIGGHKAWLVIEEVRE 183
           +++  ++       +          E
Sbjct: 97  VFRPPKIDLSKPIDNAKKSFSAHANE 122

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 50.6 bits (120), Expect = 6e-08
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
             +L ++ A WC  C  + P+  K A    +  +    +D  + ++DL    NI   P++
Sbjct: 32  DLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE-NQDLCMEHNIPGFPSL 90

Query: 157 QIWKDGEMKS 166
           +I+K+ ++ +
Sbjct: 91  KIFKNSDVNN 100

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 47.5 bits (112), Expect = 7e-07
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKVSKDLVKRGNISKM 153
            + +L+ + A WC  C  L P  ++LA  +    + +    +D    +++ V+   I   
Sbjct: 376 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLD---HTENDVRGVVIEGY 432

Query: 154 PTIQIWKDGEMKSEVI 169
           PTI ++  G+ KSE +
Sbjct: 433 PTIVLYPGGK-KSESV 447

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 48.5 bits (115), Expect = 2e-07
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 87  DQILLRAQELSQPILID-WMASWCRKCIYLKPKLEKLAAEFDT----KLKFYYVDVNKVS 141
           D+     + + Q + I  ++   C  C        K A E       K+    V+  +  
Sbjct: 123 DETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-Y 181

Query: 142 KDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185
            +   + N+  +P I I  +GE + E  G +   + +E++   +
Sbjct: 182 PEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 48.1 bits (114), Expect = 2e-07
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 76  ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
            +  +   +   + + + Q+    I+++      R C  L   LE LAAE+   +KF  +
Sbjct: 100 FVYELETGEQFLETIEKEQK-VTTIVVNIYEDGVRGCDALNSSLECLAAEY-PMVKFCKI 157

Query: 136 DVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIG 170
             +        R +   +PT+ ++K GE+ S  I 
Sbjct: 158 RASNT--GAGDRFSSDVLPTLLVYKGGELISNFIS 190

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEF----DTKLKFYYVDVNKVSKDLVKRGNISKMP 154
             ++++ A WC  C  L+P+    A+E       K+K   VD   V++ L  R  I   P
Sbjct: 27  VWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDAT-VNQVLASRYGIRGFP 85

Query: 155 TIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
           TI+I++ GE   +  GG     ++    ++   
Sbjct: 86  TIKIFQKGESPVDYDGGRTRSDIVSRALDLFSD 118

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKVSKDLVKRGNISKMPT 155
            +L+++ A WC  C  L P+  K A +     ++++   VD  +   DL ++  +   PT
Sbjct: 26  YLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-ESDLAQQYGVRGYPT 84

Query: 156 IQIWKDGEMKS 166
           I+ +++G+  S
Sbjct: 85  IKFFRNGDTAS 95

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 8/110 (7%)

Query: 86  LDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKV-S 141
             + L  AQ   + +++ + +  C  C  +   +     ++   + +     V V+    
Sbjct: 8   YPEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEG 67

Query: 142 KDLVKRGNISKMPTIQIW-KDGEMKSEV---IGGHKAWLVIEEVREMIKK 187
           ++L +R  +   PT            EV    G       ++E+R++  K
Sbjct: 68  QELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVK 117

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 47.8 bits (113), Expect = 6e-07
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNISKMP 154
            + + +++ A WC  C  L P  +KL   +     +    +D    + + V+   +   P
Sbjct: 267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMD---STANEVEAVKVHSFP 323

Query: 155 TIQIWKDGEMKSEVI 169
           T++ +        VI
Sbjct: 324 TLKFFPASA-DRTVI 337

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKVSKDLVKRGNISKMPT 155
              I + A WC  C  L P  E+L+ +       +K   VD     +++  + ++   PT
Sbjct: 23  ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT-AERNICSKYSVRGYPT 81

Query: 156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           + +++ G+  SE  GG           + + +FV
Sbjct: 82  LLLFRGGKKVSEHSGGRDL--------DSLHRFV 107

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157
              L+++ A WC  C  L P+ +K A      +K   V+ +K  + L  +  +   PTI+
Sbjct: 36  GLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADK-HQSLGGQYGVQGFPTIK 94

Query: 158 IWKDGEMKSE 167
           I+   + K E
Sbjct: 95  IFGANKNKPE 104

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 45.1 bits (107), Expect = 9e-07
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 15/88 (17%)

Query: 97  SQPILIDWMASWC--------------RKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK 142
              IL+D+ A WC                C  + P L+++A E+  KL    +++++   
Sbjct: 21  DGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG 80

Query: 143 DLVKRGNISKMPTIQIWKDGEMKSEVIG 170
              K G I  +PT+ ++K+GE+ +  +G
Sbjct: 81  TAPKYG-IRGIPTLLLFKNGEVAATKVG 107

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 106 ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMK 165
           +  C  C      +++   EF  K+    +D+    ++      +  +P I I  +G ++
Sbjct: 10  SPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV-DREKAIEYGLMAVPAIAI--NGVVR 66

Query: 166 SEVIGGHKAWLVIEEVREMIK 186
              +G      + E + + ++
Sbjct: 67  --FVGAPSREELFEAINDEME 85

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVD-V 137
           D+D +   +L +        +++ ASWC   I   P  ++LA +       L    +D  
Sbjct: 18  DADSVRPTVLGSSS---AWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCA 74

Query: 138 NKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
            + +  + +  NI+  PT++ ++             A   ++ +R  +   +
Sbjct: 75  EETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDAL 126

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 81  NDSDHLDQILLRAQELSQPILIDWMAS--WCRKCIYLKPKLEKLAAEFDT-----KLKFY 133
           +    L ++    +E  +P+ I   +    C  C   +  L++            K+K  
Sbjct: 6   DVRMQLKELA--QKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLD 63

Query: 134 YVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG 171
                   K+  ++  + ++PTI I  D +     IG 
Sbjct: 64  IYSPFT-HKEETEKYGVDRVPTIVIEGDKDYGIRYIGL 100

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEF------DTKLKFYYVDVNKVSKDLVKRGNIS 151
              L+++ A WCR    L P  E+ +         + ++ F  VD ++   D+ +R  IS
Sbjct: 23  DVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ-HSDIAQRYRIS 81

Query: 152 KMPTIQIWKDGEMKSEVIGGHK 173
           K PT++++++G M      G +
Sbjct: 82  KYPTLKLFRNGMMMKREYRGQR 103

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKVSKDLVKRGNISKM 153
              +L+++ A WC  C    P+ EK+A+     D  +    +D    +  L  + ++S  
Sbjct: 34  KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS-ASMLASKFDVSGY 92

Query: 154 PTIQIWKDGEMKSEVIGGHKA 174
           PTI+I K G+   +  G    
Sbjct: 93  PTIKILKKGQ-AVDYDGSRTQ 112

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 11/93 (11%)

Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----KDLVKRGNISK 152
           +          C  C      L  + AE  TK   Y+++  + S     +    R  I  
Sbjct: 30  ETATFFIGRKTCPYCRKFAGTLSGVVAE--TKAHIYFINSEEPSQLNDLQAFRSRYGIPT 87

Query: 153 MPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185
           +P      DG++         A    +E+++  
Sbjct: 88  VPGFVHITDGQINVRCDSSMSA----QEIKDFA 116

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 96  LSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMP 154
           L    +I++ A WC  C  L+P+ E  A    D ++    VDV      L  R  I+ +P
Sbjct: 21  LEGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVT-EQPGLSGRFIINALP 79

Query: 155 TIQIWKDGEMK 165
           TI   KDGE +
Sbjct: 80  TIYHCKDGEFR 90

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVD-V 137
            +D +   +L ++       +++ ASWC  CI   P    LA +       L    +D  
Sbjct: 18  QADTVRGAVLGSRS---AWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCA 74

Query: 138 NKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
            + +  + +  NI   PT++ +              A   ++ +RE +   +
Sbjct: 75  EETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDAL 126

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A Length = 123

 Score = 42.4 bits (99), Expect = 8e-06
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 14/68 (20%)

Query: 107 SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV----------NKVSKDLVKRGNISKMPTI 156
           SWC  C+  +P + +          F Y  V          N   K+L     ++ +PT+
Sbjct: 41  SWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNL----KVTAVPTL 96

Query: 157 QIWKDGEM 164
             +   + 
Sbjct: 97  LKYGTPQK 104

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----SKDLVKRGNISK 152
            + + + +   W R  +      + L+     K         ++      D+++R  +S 
Sbjct: 33  EKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSG 92

Query: 153 MPTIQIWKDGEMKSEVI 169
            PT++ +   + K E  
Sbjct: 93  FPTMRYYTRID-KQEPF 108

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPT 155
            + +LI++ A WC  C  L+P    L  ++  +       ++  +      +  +   PT
Sbjct: 25  KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT 84

Query: 156 IQIWKDGEMKSEV 168
           I     G+ K+ +
Sbjct: 85  IYFAPSGDKKNPI 97

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Length = 137

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 13/109 (11%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 79  PINDSDHLDQILLRAQELSQPILIDWMASWCR--KCIYLKPKLEKLAAEFDTKLKFYYVD 136
            + D   +D  +  + +    +++ +     R  +   L   L +L   F  +L    V 
Sbjct: 18  TLVDEATVDDFIAHSGK---IVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVA 74

Query: 137 VNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185
                + L+ R  ++  P++ + +       +         + ++  M+
Sbjct: 75  AEA-ERGLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAML 122

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 5/108 (4%)

Query: 86  LDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS- 141
            +      Q  ++ ++I+        C  L   +   E +         F+ V  +    
Sbjct: 31  FETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEG 90

Query: 142 KDLVKRGNISKMPTIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIKKF 188
           +  ++   +   P + I       K            +++V   + + 
Sbjct: 91  QRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEH 138

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 78  EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLE--KLAAEFDTKLKFYYV 135
           E  +    + + L   +   +P L+ + A+WC  C  L   L   K  A      +   +
Sbjct: 10  EHADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKI 69

Query: 136 DVNKVSK--DLVKRGNISKM---PTIQIW-KDGEMKSEVIGG 171
           DV    +  +L +          P + +   DG+++    GG
Sbjct: 70  DVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGG 111

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 10/99 (10%)

Query: 99  PILIDWMASWCRKCIYLKPKLEKLAAEF--------DTKLKFYYVDVNKVSKDLVKRGNI 150
            +L  +           + + +                 + F  VD  K    L K+   
Sbjct: 29  DVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK-EAKLAKKLGF 87

Query: 151 SKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
            +  ++ + K      E  G   A +++E + ++I+  V
Sbjct: 88  DEEGSLYVLKGDRTI-EFDGEFAADVLVEFLLDLIEDPV 125

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK-RGNISKMPT 155
           ++ +LI++ A WC  C  L PK E+L A +        V + KV          I   PT
Sbjct: 25  TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPT 84

Query: 156 IQIWKDGEMKSEVI 169
           I+++  G  K + +
Sbjct: 85  IKLYPAGA-KGQPV 97

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} Length = 151

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 86  LDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSK 142
            ++ L  AQ+  +P+++      C+    LK      E++      K     +      K
Sbjct: 33  YEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDK 92

Query: 143 DLVKRGNISKMPTIQIW-KDGEMKSEVIG 170
           +L   G    +P I        +++++ G
Sbjct: 93  NLSPDGQY--VPRIMFVDPSLTVRADIAG 119

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 98  QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157
           +   +++ +  C  C  L P   + A E D  L+   V+     + L +   ++  P++ 
Sbjct: 115 ELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGD-DRMLCRMKGVNSYPSLF 173

Query: 158 IWKDG 162
           I++ G
Sbjct: 174 IFRSG 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	1e-11
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	1e-09
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	2e-09
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	3e-09
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	7e-09
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	7e-09
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	9e-09
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	1e-08
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	4e-08
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	5e-08
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	6e-08
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	6e-08
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	1e-07
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	2e-07
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	8e-07
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	8e-06
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	1e-05
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	2e-05
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	3e-05
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	6e-05
d1a8la1	119	c.47.1.2 (A:1-119) Protein disulfide isomerase, PD	1e-04
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	1e-04
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	2e-04
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	3e-04
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	5e-04
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	0.001
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	0.002
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	0.002

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 57.1 bits (137), Expect = 1e-11
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 6/110 (5%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           I+     D  L + +E  +PI++D+ A+WC  C  + P  E L+ ++  K+ F  VDV+ 
Sbjct: 7   IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA 66

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           V   + +   I+ MPT  ++KDG    +++G  +     ++++ ++ K  
Sbjct: 67  V-AAVAEAAGITAMPTFHVYKDGVKADDLVGASQ-----DKLKALVAKHA 110

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 1e-09
 Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 74  SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFY 133
           S  L  +++   +DQ +L  ++  + ++I +   W   C+ +   L  +A +       Y
Sbjct: 1   SYMLPHLHNGWQVDQAILSEED--RVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIY 58

Query: 134 YVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG---HKAWLVIEEVREMIK 186
            VD+ +V     K   +    T+  +   +     +G    +K    +E+ +EM+ 
Sbjct: 59  LVDITEVPDF-NKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVD 113

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 50.6 bits (120), Expect = 2e-09
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 8/106 (7%)

Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141
             D  D  +L+A      IL+D+ A WC  C  + P L+++A E+  KL    +++++  
Sbjct: 8   TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64

Query: 142 KDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
               K G    +PT+ ++K+GE+ +  +G         +++E +  
Sbjct: 65  GTAPKYGIRG-IPTLLLFKNGEVAATKVGALSK----GQLKEFLDA 105

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 3e-09
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 78  EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           +P+         L  A    +  ++ +    C  C+ + P    ++ ++     F  VDV
Sbjct: 4   KPVGSDPDFQPELSGAGS--RLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQA-VFLEVDV 60

Query: 138 NKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           ++  +      NIS  PT Q +++     +  G          + E IK+ +
Sbjct: 61  HQ-CQGTAATNNISATPTFQFFRNKVRIDQYQGADA-----VGLEEKIKQHL 106

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.5 bits (117), Expect = 7e-09
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
            +  +  ++ L +A E    +++D+ ASWC  C ++ P               +      
Sbjct: 11  CHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFAD--LAKKLPNVLFLKVDTD 68

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
             K +     I  MPT    K+G++  +V+G  K     +E++  I K +
Sbjct: 69  ELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKK-----DELQSTIAKHL 113

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.2 bits (122), Expect = 7e-09
 Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 76  ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
            +  +   +   + + + Q+    I+++      R C  L   LE             + 
Sbjct: 100 FVYELETGEQFLETIEKEQK-VTTIVVNIYEDGVRGCDALNSSLEC---LAAEYPMVKFC 155

Query: 136 DVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAW---LVIEEVREMIKK 187
            +   +     R +   +PT+ ++K GE+ S  I   + +       +V   + +
Sbjct: 156 KIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNE 210

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 49.7 bits (118), Expect = 9e-09
 Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 10/131 (7%)

Query: 59  DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK 118
           D   +ALW    R  +    P+++S  LD  L +A +    +L+        +       
Sbjct: 4   DTPFDALW---QRMLARGWTPVSESR-LDDWLTQAPD--GVVLLSSDPKRTPEVSDNPVM 57

Query: 119 LEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI 178
           + +L  EF        +   + S+ +  R  + + P   ++  G  +  + G H      
Sbjct: 58  IGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW---- 113

Query: 179 EEVREMIKKFV 189
            E+  +++  V
Sbjct: 114 AELINLMRGLV 124

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 1e-08
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           I       + L  A +  + +++D+ A+WC  C  +KP    L+ ++     F  VDV+ 
Sbjct: 5   IESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV-IFLEVDVDD 61

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
             +D+     +  MPT Q +K G+   E  G +K     E++   I + V
Sbjct: 62  -CQDVASECEVKCMPTFQFFKKGQKVGEFSGANK-----EKLEATINELV 105

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 47.2 bits (111), Expect = 4e-08
 Identities = 27/115 (23%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 75  VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY 134
           +E   +ND      ++L +   S P+L+D+ A WC  C  + P ++++A E+  KLK   
Sbjct: 1   MEAGAVNDDT-FKNVVLES---SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVK 56

Query: 135 VDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
           ++ ++   ++     I  +PTI ++K G+    +IG          + + ++K++
Sbjct: 57  LNTDES-PNVASEYGIRSIPTIMVFKGGKKCETIIGAVPK----ATIVQTVEKYL 106

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 47.3 bits (112), Expect = 5e-08
 Identities = 17/101 (16%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 86  LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDL 144
           +D  + R  +    IL+        +       + +L  EF     +    D+ + S+ +
Sbjct: 21  VDDWIKRVGD--GVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ-SEAI 77

Query: 145 VKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185
             R N+ + P   ++ DG+++  + G H    ++  +R ++
Sbjct: 78  GDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIV 118

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 47.1 bits (111), Expect = 6e-08
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 82  DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141
           + D    I+  A +  +P+++D    WC  C  + PK EKLA E+     F  +D N+ +
Sbjct: 12  NKDTFWPIVKAAGD--KPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDV-IFLKLDCNQEN 68

Query: 142 KDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
           K L K   I  +PT +I K+  +  EV G        +++ E I+ 
Sbjct: 69  KTLAKELGIRVVPTFKILKENSVVGEVTGAKY-----DKLLEAIQA 109

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 46.7 bits (110), Expect = 6e-08
 Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            +P+L+D+ A+WC  C  + P LE+ A     K+    ++V++   +   +  I  +PT+
Sbjct: 17  DKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN-PETTSQFGIMSIPTL 75

Query: 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIK 186
            ++K GE   ++IG      +  ++ ++++
Sbjct: 76  ILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 8/108 (7%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           + D   LD  L +A    + +++D+ A+WC  C  + PKL +L+ +F   +    VDV++
Sbjct: 10  VKDKADLDGQLTKASG--KLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 67

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
             +D+    NIS MPT    K+G    E  G +      + + ++IK 
Sbjct: 68  -CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANA-----KRLEDVIKA 109

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 45.6 bits (107), Expect = 2e-07
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
            +  D   +   + +   + I++D+ ASWC  C  + P   +LA +F      +      
Sbjct: 9   CHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN--VTFLKVDVD 66

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
             K + +  N+  MPT    KDG++  + +G  K     + +  ++ K
Sbjct: 67  ELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADK-----DGLPTLVAK 109

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 43.7 bits (102), Expect = 8e-07
 Identities = 21/110 (19%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           I D++  +  +L+A    QP+L+ + ASWC  C  + P +   A  +  +LK   ++++ 
Sbjct: 7   ITDAE-FESEVLKA---EQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP 62

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
                VK+  +  +P +++ K  ++     G        +++   +   +
Sbjct: 63  N-PTTVKKYKVEGVPALRLVKGEQILDSTEGVISK----DKLLSFLDTHL 107

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 41.0 bits (95), Expect = 8e-06
 Identities = 21/110 (19%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138
           +      D I+      ++ +++D+ A WC  C  + P  E+ +  +         VD  
Sbjct: 5   VTSQAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEV 60

Query: 139 KVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188
               ++ ++ NI+ MPT +++K+G     ++G +        ++++I+K+
Sbjct: 61  S---EVTEKENITSMPTFKVYKNGSSVDTLLGAND-----SALKQLIEKY 102

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPT 155
           ++ +LI++ A WC  C  L PK E+L A +  ++ K   V     +        I   PT
Sbjct: 20  TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPT 79

Query: 156 IQIWKDGEMKSEV--IGGHKAWLVIEEVREMIKK 187
           I+++  G     V   G      +I+ + E  K 
Sbjct: 80  IKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY 113

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 15/97 (15%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKF 132
           ++  +   + + +     + I   +         SWC  C+  +P + +          F
Sbjct: 6   VSGFEEFHRAVEQHN--GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVF 63

Query: 133 YYVDVNKVSKDLV------KRGNISKMPTIQIWKDGE 163
            Y  V +            K   ++ +PT+  +   +
Sbjct: 64  IYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQ 100

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
            + +L+ + A WC  C  L P  ++LA  +        +     +++ V+   I   PTI
Sbjct: 30  KKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTI 89

Query: 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
            ++  G+    V+  ++    ++ + + IK+
Sbjct: 90  VLYPGGKKSESVV--YQGSRSLDSLFDFIKE 118

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 38.4 bits (88), Expect = 6e-05
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +NDS   + +L    E   P+++D+ A WC  C  + P +++LA E+  K+  Y ++ ++
Sbjct: 4   VNDSSWKEFVL----ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 59

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189
               +  + NI  +PT+  +K+GE K  +IG          + + I+K++
Sbjct: 60  A-PGIATQYNIRSIPTVLFFKNGERKESIIGAVPK----STLTDSIEKYL 104

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
           I+D+D          ++  P+ +        C+ C  LK  +++L+   D KL +  VD 
Sbjct: 4   ISDADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTD-KLSYEIVDF 62

Query: 138 NKVS-KDLVKRGNISKMPTIQIWKDGE 163
           +    K+L KR  I + P   I +DG+
Sbjct: 63  DTPEGKELAKRYRIDRAPATTITQDGK 89

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 86  LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV 145
           L+     A     P+++    SWC  C  LKPK  +     +    F  V++    +   
Sbjct: 14  LEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKD 73

Query: 146 KRGNISKMPTIQIW---KDGEMKSEVIG 170
           +  +       +I      G++  E+I 
Sbjct: 74  EDFSPDGGYIPRILFLDPSGKVHPEIIN 101

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 14/122 (11%), Positives = 36/122 (29%), Gaps = 20/122 (16%)

Query: 75  VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLA---AEFDTKLK 131
           V+L    D    ++ + R        ++ +  +               +    +    L 
Sbjct: 5   VDL----DELSFEKTVER----FPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLL 54

Query: 132 FYYVDV----NKVSKDLVKRG--NISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185
              V V       +K L  R   +    P+I ++K    +   +  H    + + ++  +
Sbjct: 55  IATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTL-DNLKAFV 113

Query: 186 KK 187
             
Sbjct: 114 SA 115

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156
              +L ++ A WC  C  + P+  K A     K           ++DL    NI   P++
Sbjct: 27  HDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSL 86

Query: 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187
           +I+K+ ++ + +    +     E + + + K
Sbjct: 87  KIFKNSDVNNSIDY--EGPRTAEAIVQFMIK 115

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 36.0 bits (82), Expect = 5e-04
 Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 80  INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
           +   +    I+          +  + A WC  C     +       ++     +      
Sbjct: 13  VYSVEQFRNIM----SEDILTVAWFTAVWCGPCK--TIERPMEKIAYEFPTVKFAKVDAD 66

Query: 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIK 186
            + ++V +  + ++PT  I + G+M   VIG +   L  +++R++IK
Sbjct: 67  NNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLR-QKLRDIIK 112

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 97  SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD--LVKRGNISKMP 154
            + +L+++ A WC  C  L P+  K A +   +     +     +++  L ++  +   P
Sbjct: 24  HKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYP 83

Query: 155 TIQIWKDGEMKS--EVIGGHKAWLVIEEVREMIKKFV 189
           TI+ +++G+  S  E   G +A    +++   +KK  
Sbjct: 84  TIKFFRNGDTASPKEYTAGREA----DDIVNWLKKRT 116

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 9/82 (10%)

Query: 106 ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMK 165
           +  C  C      +++ A +              V ++      +  +P I I       
Sbjct: 10  SPTCPYCPMAIEVVDE-AKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAINGVVRF- 67

Query: 166 SEVIGGHKAWLVIEEVREMIKK 187
              +G        EE+ E I  
Sbjct: 68  ---VGAPSR----EELFEAIND 82

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (77), Expect = 0.002
 Identities = 10/48 (20%), Positives = 17/48 (35%)

Query: 91  LRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
           L A   + P+L  +  + C  C   K  L+     F  +     +  N
Sbjct: 9   LSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPEN 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.94
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.93
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.93
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.93
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.93
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.93
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.93
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.93
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.92
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.92
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.92
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.92
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.9
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.89
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.89
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.87
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.87
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.85
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.85
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.84
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.83
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.83
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.83
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.82
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.81
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.8
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.8
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.78
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.76
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.74
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.7
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.68
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.65
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.64
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.62
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.61
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.61
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.59
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.56
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.52
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.5
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.5
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.49
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.41
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.39
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.27
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.21
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.94
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.88
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.84
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.75
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.74
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.68
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.66
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.63
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.62
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.58
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.56
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	98.52
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.51
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	98.51
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	98.44
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.39
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.36
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	98.31
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	98.3
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.29
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.24
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.18
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.17
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	98.16
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.16
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	98.09
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.04
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	98.03
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.98
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	97.93
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	97.62
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.61
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	97.54
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.52
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.49
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	97.34
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	97.32
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.32
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.3
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	97.3
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.23
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.06
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	96.81
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.78
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	96.55
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	95.72
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	94.44
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	93.88
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	93.63
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	93.34
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	92.98
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	92.69
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	92.54
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	92.33
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	91.68
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	91.48
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	91.44
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	91.07
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	90.83
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	90.54
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	90.5
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	90.13
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	89.95
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	89.72
d1r5pa_	90	Circadian oscillation regulator KaiB {Cyanobacteri	80.95
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	80.52

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.94  E-value=8.2e-26  Score=145.80  Aligned_cols=107  Identities=27%  Similarity=0.627  Sum_probs=98.1

Q ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCE
Q ss_conf             22324996579999999630899499999569995443210999999998279709999985587188998689997876
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      .+..+.+.++|++.+..+..++++++|+||++||++|+.+.|.++++++++.+++.|+.+|++.++. ++++|+|+++||
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~-l~~~~~v~~~Pt   81 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA-VAEAAGITAMPT   81 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH-HHHHHTCCBSSE
T ss_pred             CEEEEECHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCC-CCCCCCCCCCCE
T ss_conf             8899708999999999876429919999985875787524222355541246268998730234442-100151067898


Q ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             999829958899848875001699999999842
Q 029703          156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +++|++|+.+.++.|. +.    ++|++||+++
T Consensus        82 ~~~~~~G~~v~~~~G~-~~----~~l~~~i~k~  109 (112)
T d1ep7a_          82 FHVYKDGVKADDLVGA-SQ----DKLKALVAKH  109 (112)
T ss_dssp             EEEEETTEEEEEEESC-CH----HHHHHHHHHH
T ss_pred             EEEEECCEEEEEEECC-CH----HHHHHHHHHH
T ss_conf             9999999999999596-99----9999999987

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.93  E-value=5e-26  Score=146.88  Aligned_cols=99  Identities=23%  Similarity=0.510  Sum_probs=92.7

Q ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEEC
Q ss_conf             96579999999630899499999569995443210999999998279709999985587188998689997876999829
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKD  161 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~  161 (189)
                      +.++|++.+    .++++++|+||++||++|+.+.|.+.++++++.+++.|+++|++..+. ++.+|+|.++||+++|++
T Consensus         6 t~~~f~~~i----~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~V~~~Pt~~~~~~   80 (105)
T d1nw2a_           6 TDANFQQAI----QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE-TTSQFGIMSIPTLILFKG   80 (105)
T ss_dssp             CTTTHHHHT----TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH-HHHHTTCCBSSEEEEEET
T ss_pred             CHHHHHHHH----HCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCC-CHHHCCCCEEEEEEEEEC
T ss_conf             789999998----589929999977898885311400010034238926999997988715-488879643107999989


Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             9588998488750016999999998429
Q 029703          162 GEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       162 G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      |+.+.++.|..+.    +.|+++|+++|
T Consensus        81 G~~~~~~~G~~~~----~~l~~~i~~~L  104 (105)
T d1nw2a_          81 GEPVKQLIGYQPK----EQLEAQLADVL  104 (105)
T ss_dssp             TEEEEEEESCCCH----HHHHHHTTTTC
T ss_pred             CEEEEEEECCCCH----HHHHHHHHHHH
T ss_conf             9898899788999----99999999973

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.93  E-value=7e-26  Score=146.15  Aligned_cols=104  Identities=26%  Similarity=0.601  Sum_probs=94.4

Q ss_pred             EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEE
Q ss_conf             23249965799999996308994999995699954432109999999982797099999855871889986899978769
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      +..|+ .++|++.+.   .++++++|+||++||++|+.+.|.+.++++++.+++.++++|++.+++ ++++|+|.++||+
T Consensus         3 ~~~i~-~~~f~~~v~---~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~V~~~Pt~   77 (107)
T d1dbya_           3 AGAVN-DDTFKNVVL---ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN-VASEYGIRSIPTI   77 (107)
T ss_dssp             CEEEC-HHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHHTCCSSCEE
T ss_pred             CEEEC-HHHHHHHHH---HCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHH-HHHHHCCCCEEEE
T ss_conf             66755-899999998---489919999989987775446718888877643440699996666566-7988134626799


Q ss_pred             EEEECCEEEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             998299588998488750016999999998429
Q 029703          157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       157 ~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      ++|++|+.+.++.|..+.    +.|.++|+++|
T Consensus        78 ~~~~~G~~v~~~~G~~~~----~~l~~~i~~~L  106 (107)
T d1dbya_          78 MVFKGGKKCETIIGAVPK----ATIVQTVEKYL  106 (107)
T ss_dssp             EEESSSSEEEEEESCCCH----HHHHHHHHHHC
T ss_pred             EEEECCEEEEEEECCCCH----HHHHHHHHHHH
T ss_conf             999878088898679999----99999999852

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2.3e-25  Score=143.50  Aligned_cols=108  Identities=25%  Similarity=0.525  Sum_probs=98.0

Q ss_pred             CCEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCC
Q ss_conf             32232499657999999963089949999956999544321099999999827970999998558718899868999787
Q 029703           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMP  154 (189)
Q Consensus        75 ~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~P  154 (189)
                      ..+..+.+.++|++.+..+..++++++|+||++||++|+.+.|.++++++.+ +++.|+.+|+++++. ++++|+|+++|
T Consensus         6 ~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~-~~~~~~~vd~~~~~~-l~~~~~V~~~P   83 (114)
T d1xfla_           6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL-PNVLFLKVDTDELKS-VASDWAIQAMP   83 (114)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHC-SSEEEEEEETTTSHH-HHHHTTCCSSS
T ss_pred             CCEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHCCCC-CCCCEEEEEEEECEE-ECCCCCEEEEE
T ss_conf             8589976999999999986526996999998688788643330001101345-665204787410100-10005541157


Q ss_pred             EEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             69998299588998488750016999999998429
Q 029703          155 TIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       155 t~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      |+++|++|+.+.++.|. +.    ++|.++|+++|
T Consensus        84 t~~~~~~G~~v~~~~G~-~~----~~l~~~i~k~l  113 (114)
T d1xfla_          84 TFMFLKEGKILDKVVGA-KK----DELQSTIAKHL  113 (114)
T ss_dssp             EEEEEETTEEEEEEESC-CH----HHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEECC-CH----HHHHHHHHHHH
T ss_conf             99999899999999296-99----99999999961

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=2.9e-25  Score=143.01  Aligned_cols=107  Identities=27%  Similarity=0.530  Sum_probs=96.9

Q ss_pred             CCEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCC
Q ss_conf             32232499657999999963089949999956999544321099999999827970999998558718899868999787
Q 029703           75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMP  154 (189)
Q Consensus        75 ~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~P  154 (189)
                      ..+.++.+.++|+..+..  .++++++|+||++||++|+.+.|.++++++++.+.+.++.+|++++++ ++++|+|.++|
T Consensus         5 ~~v~~i~~~~~~~~~l~~--~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~-l~~~~~V~~~P   81 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECED-IAMEYNISSMP   81 (111)
T ss_dssp             CCEEECCSHHHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH-HHHHTTCCSSS
T ss_pred             CEEEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCC-HHHCCCCCCCC
T ss_conf             707997798999999986--599989999997865685000145798864115524799998503701-22217775350


Q ss_pred             EEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             69998299588998488750016999999998429
Q 029703          155 TIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       155 t~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      |+++|++|+.+.++.|...     ++|.++|+++|
T Consensus        82 t~~~~~~G~~v~~~~G~~~-----~~l~~~I~~~l  111 (111)
T d1xwaa_          82 TFVFLKNGVKVEEFAGANA-----KRLEDVIKANI  111 (111)
T ss_dssp             EEEEEETTEEEEEEESCCH-----HHHHHHHHHTC
T ss_pred             EEEEEECCEEEEEEECCCH-----HHHHHHHHHCC
T ss_conf             8999989979999968998-----99999998429

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.93  E-value=1.5e-25  Score=144.43  Aligned_cols=103  Identities=26%  Similarity=0.643  Sum_probs=93.8

Q ss_pred             EECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEE
Q ss_conf             32499657999999963089949999956999544321099999999827970999998558718899868999787699
Q 029703           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      .+++ .++|++.+.   .++++++|+||++||++|+.+.|.+.++++.+.+++.++.+|++.++. ++++|+|.++||++
T Consensus         2 ~el~-d~~f~~~v~---~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~-l~~~~~V~~~Pt~~   76 (104)
T d1fb6a_           2 QDVN-DSSWKEFVL---ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG-IATQYNIRSIPTVL   76 (104)
T ss_dssp             EECC-TTTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSSEEE
T ss_pred             EECC-HHHHHHHHH---CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHH-HHHHCCEEEEEEEE
T ss_conf             6895-343899997---089939999986864776535833688877603765305895145554-55414652545789


Q ss_pred             EEECCEEEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             98299588998488750016999999998429
Q 029703          158 IWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       158 ~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      +|++|+.+.++.|..+.    +.|.++|+++|
T Consensus        77 ~~~~G~~v~~~~G~~~~----~~l~~~i~~~L  104 (104)
T d1fb6a_          77 FFKNGERKESIIGAVPK----STLTDSIEKYL  104 (104)
T ss_dssp             EEETTEEEEEEEECCCH----HHHHHHHHHHC
T ss_pred             EEECCEEEEEEECCCCH----HHHHHHHHHHC
T ss_conf             99757489998679999----99999999729

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.93  E-value=2.1e-25  Score=143.78  Aligned_cols=105  Identities=18%  Similarity=0.433  Sum_probs=94.3

Q ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCE
Q ss_conf             22324996579999999630899499999569995443210999999998279709999985587188998689997876
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      .+.+++ .++|++.+.   .++++++|+||++||++|+.+.|.+++++.++.+.+.|+++|++.++. ++++|+|+++||
T Consensus         3 ~V~~lt-~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~I~~~Pt   77 (108)
T d1thxa_           3 GVITIT-DAEFESEVL---KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT-TVKKYKVEGVPA   77 (108)
T ss_dssp             SEEECC-GGGHHHHTT---TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH-HHHHTTCCSSSE
T ss_pred             CCEECC-HHHHHHHHH---HCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEECEECCCCCHH-HHHHHCCCCCCE
T ss_conf             853988-888999998---389939999987998875410067789998617863000002453088-999850268987


Q ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             9998299588998488750016999999998429
Q 029703          156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      +++|++|+.+.++.|..+.    ++|.+||+++|
T Consensus        78 ~~~~~~g~~v~~~~G~~~~----~~l~~~i~~~L  107 (108)
T d1thxa_          78 LRLVKGEQILDSTEGVISK----DKLLSFLDTHL  107 (108)
T ss_dssp             EEEEETTEEEEEEESCCCH----HHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEECCCCH----HHHHHHHHHHC
T ss_conf             9999999998999688999----99999999854

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.2e-25  Score=142.86  Aligned_cols=105  Identities=20%  Similarity=0.384  Sum_probs=94.3

Q ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCE
Q ss_conf             22324996579999999630899499999569995443210999999998279709999985587188998689997876
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      .+..+.+.++|++.+..  +++++++|+||++||++|+.+.|.++++++++ +++.|+++|++.+++ ++.+|+|.++||
T Consensus         2 ~v~~i~s~~~f~~~l~~--~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~-~~~~f~~vd~d~~~~-l~~~~~v~~~Pt   77 (107)
T d1gh2a_           2 GVKPVGSDPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQCQG-TAATNNISATPT   77 (107)
T ss_dssp             CEEEECSGGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHH-HHHHTTCCSSSE
T ss_pred             CEEECCCHHHHHHHHHH--CCCCEEEEEEECCCCCCCCCCCHHHHCCCCCC-CCCCCCCCCCCCCHH-HHHHCCCEECEE
T ss_conf             54890999999999986--79997999998898778643133220012322-100222344432433-466528144328


Q ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             9998299588998488750016999999998429
Q 029703          156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      +++|++|+.+.++.|. +.    +.|.++|+++|
T Consensus        78 ~~~~~~G~~v~~~~G~-~~----~~l~~~i~k~l  106 (107)
T d1gh2a_          78 FQFFRNKVRIDQYQGA-DA----VGLEEKIKQHL  106 (107)
T ss_dssp             EEEEETTEEEEEEESS-CH----HHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEECC-CH----HHHHHHHHHHH
T ss_conf             9999999899999597-99----99999999963

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.9e-25  Score=141.88  Aligned_cols=104  Identities=24%  Similarity=0.528  Sum_probs=93.7

Q ss_pred             EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEE
Q ss_conf             23249965799999996308994999995699954432109999999982797099999855871889986899978769
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      +.++.+.++|++.+..  .++++++|+||++||+||+.+.|.+.++++.+ +++.|+++|++++++ ++.+|+|+++||+
T Consensus         2 v~~i~s~~~f~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~-~~~~~~~vd~d~~~~-~~~~~~V~~~Pt~   77 (105)
T d2ifqa1           2 VKQIESKTAFQEALDA--AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDCQD-VASECEVKCMPTF   77 (105)
T ss_dssp             CEEECSHHHHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHH-HHHHTTCCBSSEE
T ss_pred             EEECCCHHHHHHHHHH--CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCC-CCCEEEECCCCCCHH-HHHHCCCEEEEEE
T ss_conf             1891899999999985--79998999998587564034444432201101-110046514425876-8988195599999


Q ss_pred             EEEECCEEEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             998299588998488750016999999998429
Q 029703          157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       157 ~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      ++|++|+.+.++.|. +.    ++|+++|+++|
T Consensus        78 ~~~~~G~~v~~~~G~-~~----~~l~~~i~~~l  105 (105)
T d2ifqa1          78 QFFKKGQKVGEFSGA-NK----EKLEATINELV  105 (105)
T ss_dssp             EEEETTEEEEEEESC-CH----HHHHHHHHHHC
T ss_pred             EEEECCEEEEEEECC-CH----HHHHHHHHHHC
T ss_conf             999999998899588-99----99999999559

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.92  E-value=8.5e-25  Score=140.69  Aligned_cols=104  Identities=26%  Similarity=0.503  Sum_probs=92.7

Q ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCE
Q ss_conf             22324996579999999630899499999569995443210999999998279709999985587188998689997876
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      .+..+.+.++|++++    .++++++|+||++||++|+.+.|.++++++++ +++.|+.+|+++++. ++.+|+|.++||
T Consensus         9 ~vi~i~s~~~~~~~~----~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~d~~~~-l~~~~~V~~~Pt   82 (113)
T d1r26a_           9 SVVDVYSVEQFRNIM----SEDILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDADNNSE-IVSKCRVLQLPT   82 (113)
T ss_dssp             CCEEECCHHHHHHHH----HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHC-TTSEEEEEETTTCHH-HHHHTTCCSSSE
T ss_pred             CEEEECCHHHHHHHH----CCCCEEEEEEECCCCCCCHHHCEECCCCCCCC-CCCCCCCCCCCCCHH-HHHHCCCCCCCE
T ss_conf             669937999999998----37983999998898765300010001111111-111110001233345-699752157878


Q ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             9998299588998488750016999999998
Q 029703          156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      +++|++|+.+.++.|.. ...+.+.|.++|+
T Consensus        83 ~~~~~~G~~v~~~~G~~-~~~l~~~l~~~ik  112 (113)
T d1r26a_          83 FIIARSGKMLGHVIGAN-PGMLRQKLRDIIK  112 (113)
T ss_dssp             EEEEETTEEEEEEESSC-HHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEECCC-HHHHHHHHHHHHC
T ss_conf             99998998999996989-8999999999845

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.92  E-value=4.7e-25  Score=141.98  Aligned_cols=106  Identities=24%  Similarity=0.530  Sum_probs=96.2

Q ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCE
Q ss_conf             22324996579999999630899499999569995443210999999998279709999985587188998689997876
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      ++..+.+.++|++.+..+..++++++|+||++||++|+.+.|.++++++++ +++.|+.+|++..+. ++.+|+|.++||
T Consensus         5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~-~~~~~~~vd~d~~~~-l~~~~~I~~~Pt   82 (113)
T d1ti3a_           5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF-PNVTFLKVDVDELKA-VAEEWNVEAMPT   82 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHC-SSEEEEEEETTTCHH-HHHHHHCSSTTE
T ss_pred             CEEEEECHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCC-CCCEEEEEEEECCCC-CCCCCEECCCCE
T ss_conf             689996799999999998737997999998486466223324554320037-984387654202565-322672324365


Q ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             999829958899848875001699999999842
Q 029703          156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +++|++|+.+.++.|. +.    +.|.++|+++
T Consensus        83 ~~~~k~G~~v~~~~G~-~~----~~l~~~i~k~  110 (113)
T d1ti3a_          83 FIFLKDGKLVDKTVGA-DK----DGLPTLVAKH  110 (113)
T ss_dssp             EEEEETTEEEEEEECC-CT----THHHHHHHHH
T ss_pred             EEEEECCEEEEEECCC-CH----HHHHHHHHHH
T ss_conf             9999999999998597-99----9999999987

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=6.9e-25  Score=141.15  Aligned_cols=105  Identities=23%  Similarity=0.534  Sum_probs=94.0

Q ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCE
Q ss_conf             22324996579999999630899499999569995443210999999998279709999985587188998689997876
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      .+.+++ .++|++.+.   .++++++|+||++||+||+.+.|.+.+++.++.+++.++.+|++.++. ++.+|+|.++||
T Consensus         3 ~v~~lt-~~~f~~~v~---~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~-l~~~~~v~~~PT   77 (108)
T d2trxa_           3 KIIHLT-DDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPT   77 (108)
T ss_dssp             TEEECC-TTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT-HHHHTTCCSSSE
T ss_pred             CCEECC-HHHHHHHHH---HCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCHHH-HHHHHCCCCEEE
T ss_conf             846988-888999998---289949999978988775334807999999841226665135632154-798838871779


Q ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             9998299588998488750016999999998429
Q 029703          156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      +++|++|+.+.++.|..+.    +.|.+||+++|
T Consensus        78 ~~~~~~G~~v~~~~G~~~~----~~l~~~i~~~L  107 (108)
T d2trxa_          78 LLLFKNGEVAATKVGALSK----GQLKEFLDANL  107 (108)
T ss_dssp             EEEEETTEEEEEEESCCCH----HHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEECCCCH----HHHHHHHHHHC
T ss_conf             9998899797898689999----99999999964

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.92  E-value=1.9e-24  Score=138.93  Aligned_cols=101  Identities=27%  Similarity=0.666  Sum_probs=92.1

Q ss_pred             EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEE
Q ss_conf             23249965799999996308994999995699954432109999999982797099999855871889986899978769
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      +..+++.++|++++    .++++++|+||++||++|+.+.|.++++++++ ++..|+.+|++++++ ++++|+|.++||+
T Consensus         2 v~~i~s~~~f~~~i----~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~-~~~~~~~vd~d~~~~-~~~~~~V~~~Pt~   75 (103)
T d1syra_           2 VKIVTSQAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFYEECSKTY-TKMVFIKVDVDEVSE-VTEKENITSMPTF   75 (103)
T ss_dssp             CEEECSHHHHHHHH----HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTTHH-HHHHTTCCSSSEE
T ss_pred             CEEECCHHHHHHHH----HCCCCEEEEEECCCCCCCCCCCCCCHHHHHCC-CCEEEEEECCCCCCC-EEEEEEEECCEEE
T ss_conf             39958999999998----47993999996786047511130000112203-204888611246753-0002235056089


Q ss_pred             EEEECCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             99829958899848875001699999999842
Q 029703          157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       157 ~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      ++|++|+.+.++.|. +.    ++|.++|+++
T Consensus        76 i~~k~G~~v~~~~G~-~~----~~l~~~i~k~  102 (103)
T d1syra_          76 KVYKNGSSVDTLLGA-ND----SALKQLIEKY  102 (103)
T ss_dssp             EEEETTEEEEEEESC-CH----HHHHHHHHTT
T ss_pred             EEEECCEEEEEEECC-CH----HHHHHHHHHH
T ss_conf             999999999999496-98----9999999965

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.90  E-value=2.2e-23  Score=133.66  Aligned_cols=104  Identities=30%  Similarity=0.539  Sum_probs=88.1

Q ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCE
Q ss_conf             22324996579999999630899499999569995443210999999998279709999985587188998689997876
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      .+.+++ .++|.+.+..  .++++++|+||++||++|+.+.|.|+++++++ +++.|+.+|++.....++++|+|.++||
T Consensus         7 ~v~~~~-~d~f~~~l~~--~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~-~~v~~~~vd~~~~~~~l~~~~~V~~~Pt   82 (112)
T d1f9ma_           7 KVTEVN-KDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY-LDVIFLKLDCNQENKTLAKELGIRVVPT   82 (112)
T ss_dssp             SEEEEC-TTTHHHHHHT--CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred             EEEEEC-HHHHHHHHHH--CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCC-CCCEEECCCCCCCCHHHHHHEEECCCCE
T ss_conf             269947-8889999997--69997999997699963689987775521333-3210000223432465675434056878


Q ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             999829958899848875001699999999842
Q 029703          156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +++|++|+.+.++.|...     +.+.++|++.
T Consensus        83 ~~~~k~G~~v~~~~G~~~-----~~l~e~i~~~  110 (112)
T d1f9ma_          83 FKILKENSVVGEVTGAKY-----DKLLEAIQAA  110 (112)
T ss_dssp             EEEEETTEEEEEEESSCH-----HHHHHHHHHH
T ss_pred             EEEEECCEEEEEEECCCH-----HHHHHHHHHC
T ss_conf             999999999999948898-----9999999973

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3e-23  Score=132.93  Aligned_cols=94  Identities=18%  Similarity=0.275  Sum_probs=83.4

Q ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCE
Q ss_conf             22324996579999999630899499999569995443210999999998279709999985587188998689997876
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT  155 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt  155 (189)
                      .+.++.+..++++++..  .++++++|.||++||++|+.+.|.++++++++.+.+.|+.||++++++ ++++|+|.++||
T Consensus         3 ~l~~l~s~~~~dq~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~-la~~~~I~~~PT   79 (137)
T d1qgva_           3 MLPHLHNGWQVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD-FNKMYELYDPCT   79 (137)
T ss_dssp             SSCBCCSHHHHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT-TTTSSCSCSSCE
T ss_pred             CCCCCCCHHHHHHHHHH--CCCCEEEEEEECCCCCCCHHCCHHHHHHHHHHHCCCEEEEEECCCCCH-HHHHCCEEEEEE
T ss_conf             13255888999999970--799889999979977552010848999998750100578864333510-043457425789


Q ss_pred             EEEEECCEEEEEEECCC
Q ss_conf             99982995889984887
Q 029703          156 IQIWKDGEMKSEVIGGH  172 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~  172 (189)
                      +++|++|+.+....|..
T Consensus        80 ~~~f~~g~~i~~~~g~~   96 (137)
T d1qgva_          80 VMFFFRNKHIMIDLGTG   96 (137)
T ss_dssp             EEEEETTEEEEEECC--
T ss_pred             EEEEECCCEEEEEECCC
T ss_conf             99996895899983478

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.1e-22  Score=130.18  Aligned_cols=104  Identities=19%  Similarity=0.465  Sum_probs=89.8

Q ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHCCCCCCC
Q ss_conf             2232499657999999963089949999956999544321099999999827-970999998558718899868999787
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNISKMP  154 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~~~l~~~~~i~~~P  154 (189)
                      .+..++ .++|++++    .+++.++|+||++||++|+.+.|.|+++++.+. +.+.|+.||++.+.. ++.+|+|.++|
T Consensus        11 ~v~~lt-~~~f~~~i----~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~P   84 (119)
T d2b5ea4          11 AVVKLA-TDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD-LCMEHNIPGFP   84 (119)
T ss_dssp             SCEECC-TTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHH-HHHHTTCCSSS
T ss_pred             CCEECC-HHHHHHHH----HCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHH-HHHHHCCCCCC
T ss_conf             518927-88899998----5699499999778667643221344332222212110466530224488-88875345698


Q ss_pred             EEEEEECCEEEE--EEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             699982995889--98488750016999999998429
Q 029703          155 TIQIWKDGEMKS--EVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       155 t~~~~~~G~~~~--~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      |+++|++|+...  .|.|..+.    +.|.+||+++.
T Consensus        85 ti~~f~~g~~~~~~~y~g~~~~----~~l~~fi~k~~  117 (119)
T d2b5ea4          85 SLKIFKNSDVNNSIDYEGPRTA----EAIVQFMIKQS  117 (119)
T ss_dssp             EEEEEETTCTTCEEECCSCCSH----HHHHHHHHHHT
T ss_pred             EEEEEECCEEEEEEEECCCCCH----HHHHHHHHHHH
T ss_conf             6999999988100774598999----99999999861

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=4.9e-23  Score=131.87  Aligned_cols=100  Identities=14%  Similarity=0.206  Sum_probs=88.3

Q ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHCCCCCCCEEEEEE
Q ss_conf             965799999996308994999995699954432109999999982797-0999998558718899868999787699982
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK-LKFYYVDVNKVSKDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~-v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~  160 (189)
                      +.++|++.+..  ..++++++.||++||++|+.+.|.+.++++++.+. +.+++||++.++. ++++|+|.++||+++|+
T Consensus        23 ~~~~~d~~~~~--~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~-la~~~~V~~~PT~~~~~   99 (132)
T d2hfda1          23 SESRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA-IGDRFGVFRFPATLVFT   99 (132)
T ss_dssp             CHHHHHHHHHH--CSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHH-HHHHHTCCSCCEEEEEE
T ss_pred             CCCCHHHHHHH--CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHH-HHHHHCCCCCEEEEEEE
T ss_conf             42069999973--7995799984278795378899999999987568863169987067989-99762657520699998


Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             9958899848875001699999999842
Q 029703          161 DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       161 ~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +|+.+.++.|..+.    +++.++|+++
T Consensus       100 ~G~~v~~~~G~~~~----~~l~~~i~~l  123 (132)
T d2hfda1         100 GGNYRGVLNGIHPW----AELINLMRGL  123 (132)
T ss_dssp             TTEEEEEECCCSCH----HHHHHHHHHH
T ss_pred             CCCEEEEECCCCCH----HHHHHHHHHH
T ss_conf             37476641399999----9999999998

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.4e-23  Score=130.45  Aligned_cols=101  Identities=23%  Similarity=0.523  Sum_probs=88.4

Q ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHC---CCEEEEEEECCCCHHHHHHHCCCCCCCEE
Q ss_conf             499657999999963089949999956999544321099999999827---97099999855871889986899978769
Q 029703           80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        80 i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      ..+.++|++.+    .+++.++|+||++||++|+.+.|.|.++++.+.   .++.++.+|++.++. ++.+|+|.++||+
T Consensus        11 ~l~~~~f~~~l----~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~Pt~   85 (120)
T d1meka_          11 VLRKSNFAEAL----AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESD-LAQQYGVRGYPTI   85 (120)
T ss_dssp             ECCTTTHHHHH----HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCS-SHHHHTCCSSSEE
T ss_pred             ECCHHHHHHHH----HCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCHH-HHHHHCCCCCCEE
T ss_conf             96888899999----669929999989986876433024332101111355420341034652415-7998098468759


Q ss_pred             EEEECCEEE--EEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             998299588--998488750016999999998429
Q 029703          157 QIWKDGEMK--SEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       157 ~~~~~G~~~--~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      ++|++|+.+  .++.|.++.    +.|.+||++++
T Consensus        86 ~~~~~G~~~~~~~~~g~~~~----~~l~~fi~~~~  116 (120)
T d1meka_          86 KFFRNGDTASPKEYTAGREA----DDIVNWLKKRT  116 (120)
T ss_dssp             EEEESSCSSSCEECCCCSSH----HHHHHHHHTTS
T ss_pred             EEEECCEEEEEEEECCCCCH----HHHHHHHHHHH
T ss_conf             99989969500796178999----99999999836

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.85  E-value=2.1e-22  Score=128.66  Aligned_cols=101  Identities=17%  Similarity=0.271  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC-CEEEEEEECCCCHHHHHHHCCCCCCCEEEEEE
Q ss_conf             96579999999630899499999569995443210999999998279-70999998558718899868999787699982
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK  160 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~  160 (189)
                      +..+++..+..  ..++++++.||++||++|+.+.|.+.++++++.+ ++.++.+|++.++. ++++|+|+++||+++|+
T Consensus        17 ~~~~ld~~~~~--~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~-l~~~~~V~~~Pt~~~~~   93 (119)
T d2es7a1          17 EASTVDDWIKR--VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEA-IGDRFNVRRFPATLVFT   93 (119)
T ss_dssp             CCC----------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHH-HHHTTTCCSSSEEEEES
T ss_pred             CCCCHHHHHHH--CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHH-HHHHCCCCCCEEEEEEE
T ss_conf             31179999972--7886799963599890277898899999986678864999997998878-89751757403799997


Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             99588998488750016999999998429
Q 029703          161 DGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       161 ~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      +|+.+.++.|..+.    +++.++|++.|
T Consensus        94 ~G~~v~~~~G~~~~----~~l~~~i~~lL  118 (119)
T d2es7a1          94 DGKLRGALSGIHPW----AELLTLMRSIV  118 (119)
T ss_dssp             CC----CEESCCCH----HHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCH----HHHHHHHHHHH
T ss_conf             68487776189999----99999999975

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.85  E-value=8.1e-21  Score=120.74  Aligned_cols=97  Identities=19%  Similarity=0.199  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHCCCCC-EEEEEECCCCHHHHHHHHHHHHHHHH----HCCCEEEEEEECCCCHHHHHHHCCCCCCCEEE
Q ss_conf             65799999996308994-99999569995443210999999998----27970999998558718899868999787699
Q 029703           83 SDHLDQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAAE----FDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~-~vv~f~a~wC~~C~~~~~~l~~~~~~----~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      .+.++.+.    ..+++ .++.||++||+||+.+.|.+.+++.+    +...+.+..+|++.+++ ++++|+|.++||++
T Consensus         4 ~~~~e~~~----~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~-l~~~~~V~~vPTi~   78 (107)
T d1a8la2           4 DETKQAIR----NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE-WADQYNVMAVPKIV   78 (107)
T ss_dssp             HHHHHHHT----TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH-HHHHTTCCSSCEEE
T ss_pred             HHHHHHHH----HCCCCEEEEEEECCCCCCCHHHCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CCCCCCCCCCEEEE
T ss_conf             78999999----56998299999958664135648268764334331457839999851542212-21124541000899


Q ss_pred             EEECCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             9829958899848875001699999999842
Q 029703          158 IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       158 ~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      ++++|+.+.++.|..+.    +++.++|.+.
T Consensus        79 i~~~G~~~~~~~G~~~~----~~~~~~i~~a  105 (107)
T d1a8la2          79 IQVNGEDRVEFEGAYPE----KMFLEKLLSA  105 (107)
T ss_dssp             EEETTEEEEEEESCCCH----HHHHHHHHHH
T ss_pred             EEECCEEEEEEECCCCH----HHHHHHHHHH
T ss_conf             99699398899789999----9999999986

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.84  E-value=8e-21  Score=120.78  Aligned_cols=100  Identities=14%  Similarity=0.192  Sum_probs=84.9

Q ss_pred             ECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH---HHHHHHCCCCCCCE
Q ss_conf             249965799999996308994999995699954432109999999982797099999855871---88998689997876
Q 029703           79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISKMPT  155 (189)
Q Consensus        79 ~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt  155 (189)
                      .+.+.+++++.+    .++++++|+||++||++|+.+.|.+.+++..++..+.++.++.....   ..++++|+|.++||
T Consensus        12 ~~~t~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1          12 EVTTVVRAQEAL----DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             EECCHHHHHHHH----HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             EECCHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCE
T ss_conf             658999999999----6699899999299983278799998999998543232210100023200232110012256527


Q ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             9998299588998488750016999999998
Q 029703          156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      +++|++|++..++.|..+.    ++|.+||.
T Consensus        88 li~~~~gk~~~~~~G~~~~----~el~~fla  114 (115)
T d1zmaa1          88 FVHITDGQINVRCDSSMSA----QEIKDFAG  114 (115)
T ss_dssp             EEEEETTEEEEECCTTCCH----HHHHHHHT
T ss_pred             EEEEECCEEEEEECCCCCH----HHHHHHHC
T ss_conf             9999899899998389999----99999972

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.83  E-value=1.7e-20  Score=119.16  Aligned_cols=102  Identities=16%  Similarity=0.199  Sum_probs=83.1

Q ss_pred             EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHH------HHHHHHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHCC
Q ss_conf             232499657999999963089949999956999544------321099999999827-9709999985587188998689
Q 029703           77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKC------IYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGN  149 (189)
Q Consensus        77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C------~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~~~l~~~~~  149 (189)
                      +..++ .++|++++    .+++.++|+||+|||++|      ..+.+.++.+++.+. ..+.|+.||++.+.. ++++|+
T Consensus        13 V~~L~-~~nf~~~l----~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~-l~~~~~   86 (124)
T d1a8ya1          13 VINVN-AKNYKNVF----KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAA-VAKKLG   86 (124)
T ss_dssp             CEECC-TTTHHHHH----HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHH-HHHTTT
T ss_pred             CEECC-HHHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC-HHHCCC
T ss_conf             37988-88899999----7398499999779862254511889999999999987056875999987404532-000034


Q ss_pred             CCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             9978769998299588998488750016999999998429
Q 029703          150 ISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       150 i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      |.++||+++|++|+.+ .|.|.++.    +.|.+||.+.|
T Consensus        87 I~~yPTi~~f~~g~~~-~y~G~r~~----~~l~~fi~~~l  121 (124)
T d1a8ya1          87 LTEEDSIYVFKEDEVI-EYDGEFSA----DTLVEFLLDVL  121 (124)
T ss_dssp             CCSTTCEEEEESSSEE-ECCSCCSH----HHHHHHHHHHH
T ss_pred             CCCCCCEEEECCCCCE-EEECCCCH----HHHHHHHHHHC
T ss_conf             5457837886167527-86379999----99999999861

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.2e-20  Score=119.90  Aligned_cols=102  Identities=21%  Similarity=0.391  Sum_probs=83.0

Q ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHC---CCEEEEEEECCCCHHHHHHHCCCCC
Q ss_conf             2232499657999999963089949999956999544321099999999827---9709999985587188998689997
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISK  152 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~  152 (189)
                      .+..++ .++|++.+.   ..+++++|+||++||++|+.+.|.|.++++.+.   ..+.++.+|++..   ++.+|+|.+
T Consensus        13 ~V~~l~-~~nf~~~v~---~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~---~~~~~~v~~   85 (140)
T d2b5ea1          13 SVFQLV-GKNHDEIVN---DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN---DVRGVVIEG   85 (140)
T ss_dssp             SEEEEC-TTTHHHHHH---CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGC---CCSSCCCSS
T ss_pred             CCEEEC-CCCHHHHHH---CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCH---HCCCCCCCC
T ss_conf             748954-769899983---6899799999844475430257999999999742455317886322301---101234566


Q ss_pred             CCEEEEEECCEEEE--EEECCCCCHHHHHHHHHHHHHH
Q ss_conf             87699982995889--9848875001699999999842
Q 029703          153 MPTIQIWKDGEMKS--EVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       153 ~Pt~~~~~~G~~~~--~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +||+++|++|+...  .|.|.++.    +.|.+||+++
T Consensus        86 ~Ptl~~f~~g~~~~~~~y~G~~t~----~~l~~fi~~~  119 (140)
T d2b5ea1          86 YPTIVLYPGGKKSESVVYQGSRSL----DSLFDFIKEN  119 (140)
T ss_dssp             SSEEEEECCTTSCCCCBCCSCCCH----HHHHHHHHHH
T ss_pred             CCEEEEEECCEECCEEEECCCCCH----HHHHHHHHHC
T ss_conf             885999989979620684798999----9999999976

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.2e-21  Score=120.72  Aligned_cols=102  Identities=16%  Similarity=0.303  Sum_probs=82.9

Q ss_pred             EECCCHHHHHHHHHHHHCCCCCEEEEEECC-------CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-------CHHH
Q ss_conf             324996579999999630899499999569-------99544321099999999827970999998558-------7188
Q 029703           78 EPINDSDHLDQILLRAQELSQPILIDWMAS-------WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-------VSKD  143 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~-------wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~-------~~~~  143 (189)
                      ..+.+.++|.+.+..  .++++++|+|||+       ||+||+.+.|.+.++++.+.+++.|+.||++.       +. .
T Consensus         4 i~v~~~~e~~~~l~~--~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~-~   80 (119)
T d1woua_           4 VSVSGFEEFHRAVEQ--HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNN-D   80 (119)
T ss_dssp             EEEESHHHHHHHHHT--TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTC-H
T ss_pred             EEECCHHHHHHHHHH--CCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHH-H
T ss_conf             896779999999997--4997799999802787789987539999999999997547861999998878721004544-5


Q ss_pred             HHHHCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             99868999787699982995889984887500169999999984
Q 029703          144 LVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       144 l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      ++.+|+|.++||+++|++|+.+....+. ..    +.|+.|+++
T Consensus        81 l~~~~~V~~iPT~i~~~~g~~l~~~~~~-~~----~ll~~~~~e  119 (119)
T d1woua_          81 FRKNLKVTAVPTLLKYGTPQKLVESECL-QA----NLVEMLFSE  119 (119)
T ss_dssp             HHHHHCCCSSSEEEETTSSCEEEGGGGG-CH----HHHHHHHHC
T ss_pred             HHHHCCEEEEEEEEEEECCEEEEEEECC-CH----HHHHHHHCC
T ss_conf             7886785888899999899697200438-99----999998639

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.2e-20  Score=118.54  Aligned_cols=111  Identities=19%  Similarity=0.306  Sum_probs=93.5

Q ss_pred             CCCEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCC
Q ss_conf             53223249965799999996308994999995699954432109999999982797099999855871889986899978
Q 029703           74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKM  153 (189)
Q Consensus        74 ~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~  153 (189)
                      -..+.+|.+.++|.+.+..+ ..+..++|.||++||++|+.|.+.|..++..| +.+.|++||++..+  +..+|+|.++
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~-~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~-~~vkF~ki~~~~~~--~~~~~~i~~l  173 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNSSLECLAAEY-PMVKFCKIRASNTG--AGDRFSSDVL  173 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHTTC-TTSEEEEEEHHHHT--CSTTSCGGGC
T ss_pred             CCEEEECCCHHHHHHHHHHC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCH--HHHHCCCCCC
T ss_conf             87599828889999999832-79975999997689887221204488776512-45338998145311--5876799878


Q ss_pred             CEEEEEECCEEEEEEECCCC---CHHHHHHHHHHHHHH
Q ss_conf             76999829958899848875---001699999999842
Q 029703          154 PTIQIWKDGEMKSEVIGGHK---AWLVIEEVREMIKKF  188 (189)
Q Consensus       154 Pt~~~~~~G~~~~~~~g~~~---~~~~~~~l~~~i~~~  188 (189)
                      ||+++|++|+.+.++.|...   .+...+.|..+|.++
T Consensus       174 Ptl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         174 PTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             SEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHC
T ss_conf             86999999999899978610156638899999999984

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.7e-19  Score=114.07  Aligned_cols=105  Identities=22%  Similarity=0.427  Sum_probs=84.3

Q ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH---HHHHHHHCCCEEEEEEECCCCH---HHHHHHCC
Q ss_conf             22324996579999999630899499999569995443210999---9999982797099999855871---88998689
Q 029703           76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS---KDLVKRGN  149 (189)
Q Consensus        76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~  149 (189)
                      .+..+.+.++++..+..  .++|+++|+||++||++|+.+.|.+   .++.+.+ .++.+..++++.+.   ..++++|+
T Consensus         3 ~f~~i~~~~~~~~~l~~--~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~   79 (117)
T d2fwha1           3 NFTQIKTVDELNQALVE--AKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL-ADTVLLQANVTANDAQDVALLKHLN   79 (117)
T ss_dssp             CCEECCSHHHHHHHHHH--HTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT-TTSEEEEEECTTCCHHHHHHHHHTT
T ss_pred             CCEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHHHHHHHHE
T ss_conf             84684689999999997--39983999986256776433316688679999851-6647775023322167888876635


Q ss_pred             CCCCCEEEEEE-CCEEEE--EEECCCCCHHHHHHHHHHHHH
Q ss_conf             99787699982-995889--984887500169999999984
Q 029703          150 ISKMPTIQIWK-DGEMKS--EVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       150 i~~~Pt~~~~~-~G~~~~--~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      |.++||+++|. +|+.+.  ++.|..+.    +++.++|++
T Consensus        80 v~~~Pt~~~~~~~G~~~~~~~~~G~~~~----~~~~~~l~~  116 (117)
T d2fwha1          80 VLGLPTILFFDGQGQEHPQARVTGFMDA----ETFSAHLRD  116 (117)
T ss_dssp             CCSSSEEEEECTTSCBCGGGCBCSCCCH----HHHHHHHHH
T ss_pred             HHHCEEEEEEECCCCEEECCCCCCCCCH----HHHHHHHHC
T ss_conf             6544089999089969732313335799----999999834

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.80  E-value=2.4e-20  Score=118.37  Aligned_cols=84  Identities=27%  Similarity=0.343  Sum_probs=75.7

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCHH
Q ss_conf             99499999569995443210999999998279709999985587188998689997876999829958899848875001
Q 029703           97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWL  176 (189)
Q Consensus        97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~  176 (189)
                      +|..+++||++||+||+.+.|.++++++.+.+.+.+..+|++.+++ ++++|+|.++||++++++|+    +.|..+.  
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~-la~~~~V~~~Pt~~i~~~g~----~~G~~~~--   74 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ-KAMEYGIMAVPTIVINGDVE----FIGAPTK--   74 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC-TTTSTTTCCSSEEEETTEEE----CCSSSSS--
T ss_pred             CCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEEEECCCE----EECCCCH--
T ss_conf             9509999987998172766442212221110000111101100113-33368714850999977919----9878999--


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             6999999998429
Q 029703          177 VIEEVREMIKKFV  189 (189)
Q Consensus       177 ~~~~l~~~i~~~l  189 (189)
                        +.|.++|+++|
T Consensus        75 --~~l~~~i~~~L   85 (85)
T d1fo5a_          75 --EALVEAIKKRL   85 (85)
T ss_dssp             --HHHHHHHHHHC
T ss_pred             --HHHHHHHHHCC
T ss_conf             --99999998519

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=2.4e-19  Score=113.38  Aligned_cols=98  Identities=11%  Similarity=0.085  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH---CCCEEEEEEECCCC----HHHHHHHCCC--C
Q ss_conf             9965799999996308994999995699954432109999999982---79709999985587----1889986899--9
Q 029703           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKV----SKDLVKRGNI--S  151 (189)
Q Consensus        81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~---~~~v~~~~vd~~~~----~~~l~~~~~i--~  151 (189)
                      .+.++|++++    .+.+.+||.||+|||++|+.  |.|.++++.+   ...+.+++||+++.    ..+++.+|+|  .
T Consensus         7 L~~~nFd~~v----~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~   80 (122)
T d2c0ga2           7 LDELSFEKTV----ERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK   80 (122)
T ss_dssp             CCTTTHHHHH----TTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTT
T ss_pred             CCHHHHHHHH----HCCCCEEEEEECCCCCCCCC--HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             6767289998----41981899998998974248--78999999999738974998436655555338999988631568


Q ss_pred             CCCEEEEEECCEEEE---EEECCCCCHHHHHHHHHHHHHH
Q ss_conf             787699982995889---9848875001699999999842
Q 029703          152 KMPTIQIWKDGEMKS---EVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       152 ~~Pt~~~~~~G~~~~---~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      ++||+++|++|....   .+.|.++.    +.|.+||+++
T Consensus        81 ~~PTi~~f~~g~~~~~~~~~~g~rt~----~~l~~fv~~~  116 (122)
T d2c0ga2          81 NFPSIFLFKGNADEYVQLPSHVDVTL----DNLKAFVSAN  116 (122)
T ss_dssp             SCCEEEEESSSSSSEEECCTTSCCCH----HHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCH----HHHHHHHHHH
T ss_conf             99938998699634311356788899----9999999983

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.78  E-value=1e-20  Score=120.22  Aligned_cols=98  Identities=24%  Similarity=0.473  Sum_probs=77.1

Q ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCC-----EEEEEEECCCCHHHHHHHCCCCCCC
Q ss_conf             49965799999996308994999995699954432109999999982797-----0999998558718899868999787
Q 029703           80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK-----LKFYYVDVNKVSKDLVKRGNISKMP  154 (189)
Q Consensus        80 i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~-----v~~~~vd~~~~~~~l~~~~~i~~~P  154 (189)
                      +.+.++|++.+.   .++++++|+||++||++|+.+.|.|+++++.+...     +.+...+...    .+.+++|.++|
T Consensus         6 ~lt~~nF~~~v~---~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~P   78 (116)
T d2djja1           6 VVVAKNYNEIVL---DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA----NDVPDEIQGFP   78 (116)
T ss_dssp             ECCTTTTTTSSS---CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT----SCCSSCCSSSS
T ss_pred             ECCCCCHHHHHH---CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCH----HHHCCCCCCCC
T ss_conf             936578899984---48997999998064665653406999999997505445505887236531----33113346898


Q ss_pred             EEEEEECCEE--EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             6999829958--899848875001699999999842
Q 029703          155 TIQIWKDGEM--KSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       155 t~~~~~~G~~--~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      |+++|++|+.  ...+.|.++.    +.|.+||+++
T Consensus        79 ti~~f~~g~~~~~~~~~g~~~~----~~l~~fi~~~  110 (116)
T d2djja1          79 TIKLYPAGAKGQPVTYSGSRTV----EDLIKFIAEN  110 (116)
T ss_dssp             EEEEECSSCTTSCCCCCCCSCH----HHHHHHHHHT
T ss_pred             EEEEEECCCCCCEEEECCCCCH----HHHHHHHHHC
T ss_conf             7999989936756784489999----9999999976

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=9.4e-19  Score=110.39  Aligned_cols=81  Identities=19%  Similarity=0.275  Sum_probs=71.5

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCHHHHH
Q ss_conf             99999569995443210999999998279709999985587188998689997876999829958899848875001699
Q 029703          100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIE  179 (189)
Q Consensus       100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~  179 (189)
                      .++.||++||+||+.+.|.++++++++.+++.++.+|++.+++ ++.+|+|.++||+++  +|+  .++.|..+.    +
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~-l~~~~~V~~~Pt~~~--~~~--~~~~G~~~~----~   74 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE-KAIEYGLMAVPAIAI--NGV--VRFVGAPSR----E   74 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG-GGGGTCSSCSSEEEE--TTT--EEEECSSCC----H
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHCCCEEECEEEE--CCC--EEEECCCCH----H
T ss_conf             9999999998326879999844032231001011334432643-687549158298999--985--899828999----9


Q ss_pred             HHHHHHHHHC
Q ss_conf             9999998429
Q 029703          180 EVREMIKKFV  189 (189)
Q Consensus       180 ~l~~~i~~~l  189 (189)
                      .|+++|++.|
T Consensus        75 ~l~~~i~~~l   84 (85)
T d1nhoa_          75 ELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
T ss_conf             9999999842

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.74  E-value=1.7e-17  Score=104.04  Aligned_cols=92  Identities=13%  Similarity=0.170  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCE
Q ss_conf             57999999963089949999956999544321099999999827970999998558718899868999787699982995
Q 029703           84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGE  163 (189)
Q Consensus        84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~  163 (189)
                      +++.+.+..  .++...++.|+++||++|+.+.|.+++++..+ +++.+..+|++.+++ ++.+|+|.++||+++  +|+
T Consensus         4 ~~~~e~ik~--l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~-~~i~~~~vd~~~~~~-l~~~~~I~~vPt~~~--ng~   77 (96)
T d1hyua4           4 QSLLEQIRD--IDGDFEFETYYSLSCHNCPDVVQALNLMAVLN-PRIKHTAIDGGTFQN-EITERNVMGVPAVFV--NGK   77 (96)
T ss_dssp             HHHHHHHHH--CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-TTEEEEEEETTTCHH-HHHHTTCCSSSEEEE--TTE
T ss_pred             HHHHHHHHH--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCCHH-HHHHCCCCCCCEEEE--CCE
T ss_conf             899999982--69983999999999842688999999988757-761899986310647-775425532429999--999


Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             889984887500169999999984
Q 029703          164 MKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       164 ~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      .+  +.|..+.    ++|.++|+.
T Consensus        78 ~~--~~G~~~~----~~l~~~les   95 (96)
T d1hyua4          78 EF--GQGRMTL----TEIVAKVDT   95 (96)
T ss_dssp             EE--EESCCCH----HHHHHHHCC
T ss_pred             EE--EECCCCH----HHHHHHHHC
T ss_conf             98--8607899----999999717

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=7.1e-17  Score=100.99  Aligned_cols=91  Identities=16%  Similarity=0.288  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH----------------------HHHHHHCCCCC
Q ss_conf             08994999995699954432109999999982797099999855871----------------------88998689997
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------------------KDLVKRGNISK  152 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~i~~  152 (189)
                      ..+|+++|+||++||+||+...|.+.++.+.   .+.++.++.+...                      ..+...|++.+
T Consensus        18 ~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~---~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~   94 (136)
T d1z5ye1          18 TQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG   94 (136)
T ss_dssp             HSSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCS
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCHHHHHHH---HHHHCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHCCCCC
T ss_conf             0999899999818687757653100223223---1100122335530456889998098632021132306777515577


Q ss_pred             CCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             87699982-9958899848875001699999999842
Q 029703          153 MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       153 ~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +|+++++. +|+++.++.|..+...+.+.|.+.|+++
T Consensus        95 ~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~kl  131 (136)
T d1z5ye1          95 APETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKY  131 (136)
T ss_dssp             BSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHHHH
T ss_pred             CCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             5358999689989999976899899999999999999

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.4e-17  Score=104.58  Aligned_cols=97  Identities=14%  Similarity=0.216  Sum_probs=76.4

Q ss_pred             CCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CEEEEEE-----ECCCCHHHHHHHC--CCC
Q ss_conf             996579999999630899499999569995443210999999998279--7099999-----8558718899868--999
Q 029703           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYV-----DVNKVSKDLVKRG--NIS  151 (189)
Q Consensus        81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~v-----d~~~~~~~l~~~~--~i~  151 (189)
                      .+.++|++++    .+++.++|.||+|||.+|.  .|.++++++.+..  +.....|     |++.+. .++.++  +|.
T Consensus         9 L~~~nFd~~i----~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~-~l~~~~~~~I~   81 (122)
T d1g7ea_           9 LDTVTFYKVI----PKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNM-ELSEKYKLDKE   81 (122)
T ss_dssp             CSHHHHHHHG----GGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHH-HHHHHHTCSSS
T ss_pred             CCHHHHHHHH----HHCCEEEEEEECCCCCCCC--CHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCH-HHHHHHCCCCC
T ss_conf             8777499999----6098099999557768535--999999999998778876302450112653057-88886423556


Q ss_pred             CCCEEEEEECCEE--EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             7876999829958--899848875001699999999842
Q 029703          152 KMPTIQIWKDGEM--KSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       152 ~~Pt~~~~~~G~~--~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      ++||+++|++|+.  ...|.|.++.    +.|.+||+++
T Consensus        82 ~yPTi~~f~~G~~~~~~~y~G~rt~----~~l~~fi~~~  116 (122)
T d1g7ea_          82 SYPVFYLFRDGDFENPVPYSGAVKV----GAIQRWLKGQ  116 (122)
T ss_dssp             SCEEEEEEESSCCCCCEEEESCCCH----HHHHHHHHTT
T ss_pred             CCCEEEEEECCCCCCCEECCCCCCH----HHHHHHHHHC
T ss_conf             7986899745765676651798999----9999999960

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=1.2e-15  Score=94.80  Aligned_cols=90  Identities=14%  Similarity=0.333  Sum_probs=76.3

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH--------------------------HHHHHHC
Q ss_conf             08994999995699954432109999999982797099999855871--------------------------8899868
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--------------------------KDLVKRG  148 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~--------------------------~~l~~~~  148 (189)
                      .++|+++|+||++||++|+...|.+.++.+++++++.++.++.+...                          ..+++.|
T Consensus        27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  106 (143)
T d2b5xa1          27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (143)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             HCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHC
T ss_conf             39898999998698952554154455665553103432268754265433134555678761367431116751058870


Q ss_pred             CCCCCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             999787699982-9958899848875001699999999842
Q 029703          149 NISKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       149 ~i~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      ++.++|+++++. +|+++.++.|..+.    +.+.+.|+++
T Consensus       107 ~v~~~P~~~~id~~G~i~~~~~G~~~~----~~l~~~l~~l  143 (143)
T d2b5xa1         107 ENEYVPAYYVFDKTGQLRHFQAGGSGM----KMLEKRVNRV  143 (143)
T ss_dssp             CCCCSSEEEEECTTCBEEEEEESCSTT----HHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCEEEEEEECCCCH----HHHHHHHHHC
T ss_conf             988489899998999799999789999----9999999719

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.64  E-value=1.2e-15  Score=94.82  Aligned_cols=92  Identities=14%  Similarity=0.204  Sum_probs=70.9

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----------------------HHHHHHHCCCCC
Q ss_conf             0899499999569995443210999999998279709999985587----------------------188998689997
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----------------------SKDLVKRGNISK  152 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~i~~  152 (189)
                      -.+|+++|+||++||++|+...|.+.++.+.++  +.+..+..+..                      ...+...|++.+
T Consensus        29 ~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (144)
T d1knga_          29 FKGKVSLVNVWASWCVPCHDEAPLLTELGKDKR--FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYG  106 (144)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT--SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCS
T ss_pred             HCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCC--CEEEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf             699889998514645555334850444311147--405789854003789999987198532112344104554227666


Q ss_pred             CCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             87699982-9958899848875001699999999842
Q 029703          153 MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       153 ~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +|+++++. +|+++.++.|..+.+.+.+.|.+.|++-
T Consensus       107 ~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~ka  143 (144)
T d1knga_         107 VPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA  143 (144)
T ss_dssp             SCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred             CCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             6438999589949999968899999999999999974

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-15  Score=94.81  Aligned_cols=108  Identities=10%  Similarity=0.132  Sum_probs=84.2

Q ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH---HHHHHHHCCCEEEEEEECCCCH-HHHHHHCCCCCCCE
Q ss_conf             4996579999999630899499999569995443210999---9999982797099999855871-88998689997876
Q 029703           80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPT  155 (189)
Q Consensus        80 i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt  155 (189)
                      +....+|++.+..|+.++|+++|+|+++||++|+.|....   .++.+.++.++.++.+|.+... ..++++|+|.++|+
T Consensus        25 i~~~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pt  104 (147)
T d2dlxa1          25 LMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPY  104 (147)
T ss_dssp             TSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSE
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHEEEEEECCCCHHHHHHHHHEECCCEEE
T ss_conf             33358999999999973993899995178872699987523789999997524567651111013565655000376148


Q ss_pred             EEEEE--CCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             99982--9958899848875001699999999842
Q 029703          156 IQIWK--DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       156 ~~~~~--~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      ++++.  .|+.+. ..|......+...|.+||.++
T Consensus       105 i~~idp~~ge~v~-~~~~~~~~~fl~~L~~fl~~~  138 (147)
T d2dlxa1         105 VSILDPRTGQKLV-EWHQLDVSSFLDQVTGFLGEH  138 (147)
T ss_dssp             EEEECTTTCCCCE-EESSCCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCEEEC-CCCCCCHHHHHHHHHHHHHHC
T ss_conf             9998089985750-248889999999999999607

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.61  E-value=3.9e-15  Score=92.25  Aligned_cols=90  Identities=23%  Similarity=0.385  Sum_probs=74.5

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCC---------------------------HHHHHH
Q ss_conf             089949999956999544321099999999827-9709999985587---------------------------188998
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV---------------------------SKDLVK  146 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~---------------------------~~~l~~  146 (189)
                      ..+|+++|+||++||++|+...|.+.++.++++ ..+.++.+..+..                           ...+++
T Consensus        21 ~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  100 (143)
T d2fy6a1          21 KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQ  100 (143)
T ss_dssp             CTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred             HCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             29998999998788865223583054444543258868999864203443201455555664078421001254457899


Q ss_pred             HCCCCCCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             68999787699982-9958899848875001699999999842
Q 029703          147 RGNISKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       147 ~~~i~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      .|++.++|+++++. +|+++.++.|..+.    +++.++|++.
T Consensus       101 ~~~v~~~P~~~liD~~G~i~~~~~G~~~~----~~~~~~l~~~  139 (143)
T d2fy6a1         101 SLNISVYPSWALIGKDGDVQRIVKGSINE----AQALALIRDP  139 (143)
T ss_dssp             HTTCCSSSEEEEECTTSCEEEEEESCCCH----HHHHHHHHCT
T ss_pred             HCCCCCCCEEEEECCCCEEEEEEECCCCH----HHHHHHHHHH
T ss_conf             85998448899998999899999799999----9999999887

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=8.4e-15  Score=90.57  Aligned_cols=88  Identities=18%  Similarity=0.330  Sum_probs=70.8

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH----------------------HHHHHHCCCCC
Q ss_conf             08994999995699954432109999999982797099999855871----------------------88998689997
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------------------KDLVKRGNISK  152 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~i~~  152 (189)
                      -.+|+++|+||++||++|+...|.+.++.+++ +++.++.++..+..                      ..+.+.|++.+
T Consensus        23 ~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~-~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~  101 (134)
T d1zzoa1          23 LLGKPAVLWFWAPWCPTCQGEAPVVGQVAASH-PEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ  101 (134)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCS
T ss_pred             HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCC
T ss_conf             68997999850341576210111467777640-22332111112320467777876077523688604546788669886


Q ss_pred             CCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             87699982-9958899848875001699999999842
Q 029703          153 MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       153 ~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +|+++++. +|++ ..+.|..+.    ++|.+.|+++
T Consensus       102 ~P~~~iiD~~G~i-~~~~g~~~~----~~l~~~i~~L  133 (134)
T d1zzoa1         102 QPAYAFVDPHGNV-DVVRGRMSQ----DELTRRVTAL  133 (134)
T ss_dssp             SSEEEEECTTCCE-EEEESCCCH----HHHHHHHHHH
T ss_pred             CCEEEEECCCCEE-EEEECCCCH----HHHHHHHHHH
T ss_conf             6769999899849-999899999----9999999964

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.2e-16  Score=95.93  Aligned_cols=88  Identities=19%  Similarity=0.312  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH--HCCCEEEEEEECCCCHHHHHHH-CCCCCCCEEEEE
Q ss_conf             6579999999630899499999569995443210999999998--2797099999855871889986-899978769998
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE--FDTKLKFYYVDVNKVSKDLVKR-GNISKMPTIQIW  159 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~--~~~~v~~~~vd~~~~~~~l~~~-~~i~~~Pt~~~~  159 (189)
                      ..+|++.+..|+.++|+++|+||++||++|+.+.+.+.+..+.  ...++..+.+|.+.... .... .....+||++++
T Consensus        11 w~~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~-~~~~~~~~~~~Pt~~~~   89 (135)
T d1sena_          11 WRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPK-DEDFSPDGGYIPRILFL   89 (135)
T ss_dssp             BCCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCS-CGGGCTTCSCSSEEEEE
T ss_pred             EEEHHHHHHHHHHCCCCEEEEEEECCCCCCEECCHHHHHHHHHHHHCCCCEEEECCCCCCHH-HHHHHHHCCCCEEEEEE
T ss_conf             66899999999981996999997268888605605566449998732782899678886878-99987412442057878


Q ss_pred             E-CCEEEEEEECC
Q ss_conf             2-99588998488
Q 029703          160 K-DGEMKSEVIGG  171 (189)
Q Consensus       160 ~-~G~~~~~~~g~  171 (189)
                      . +|+.+.++.|.
T Consensus        90 d~~G~~~~~~~g~  102 (135)
T d1sena_          90 DPSGKVHPEIINE  102 (135)
T ss_dssp             CTTSCBCTTCCCT
T ss_pred             CCCCEEEEEECCC
T ss_conf             8998098773488

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=1.7e-14  Score=89.09  Aligned_cols=89  Identities=17%  Similarity=0.305  Sum_probs=70.4

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH---------------------HHHHHHCCCCCC
Q ss_conf             08994999995699954432109999999982797099999855871---------------------889986899978
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---------------------KDLVKRGNISKM  153 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---------------------~~l~~~~~i~~~  153 (189)
                      -.+|+++|+||++||++|+...|.+.++.+++ ..+.++.++.+...                     ..+++.|++.++
T Consensus        22 ~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~  100 (134)
T d1lu4a_          22 LQGKPAVLWFWTPWCPFCNAEAPSLSQVAAAN-PAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQ  100 (134)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSS
T ss_pred             HCCCEEEEEEEECCCCCCEECCHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCCCC
T ss_conf             59987999871023577512003378875420-12220001333422556655542023451445745899998399827


Q ss_pred             CEEEEEE-CCEEEE--EEECCCCCHHHHHHHHHHHHHH
Q ss_conf             7699982-995889--9848875001699999999842
Q 029703          154 PTIQIWK-DGEMKS--EVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       154 Pt~~~~~-~G~~~~--~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      |+++++. +|++..  +..|..+.    ++|.+.|.++
T Consensus       101 P~~~lid~~G~i~~v~~~~g~~~~----~~l~~~l~~L  134 (134)
T d1lu4a_         101 PAFVFYRADGTSTFVNNPTAAMSQ----DELSGRVAAL  134 (134)
T ss_dssp             SEEEEECTTSCEEEECCSSSCCCH----HHHHHHHHHC
T ss_pred             CEEEEEECCCEEEEEECCCCCCCH----HHHHHHHHCC
T ss_conf             789999089859998266787899----9999999719

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.52  E-value=7.1e-14  Score=85.93  Aligned_cols=72  Identities=15%  Similarity=0.327  Sum_probs=59.6

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CEEEEEEECCCCHH-----------------------HHHHHCC
Q ss_conf             0899499999569995443210999999998279--70999998558718-----------------------8998689
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSK-----------------------DLVKRGN  149 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~~-----------------------~l~~~~~  149 (189)
                      -.+|+++|+||++||+||+...|.+.++.+++.+  .+.++.|+.+...+                       .+.+.|+
T Consensus        26 l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~  105 (144)
T d1i5ga_          26 LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD  105 (144)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCC
T ss_conf             49998999999168824766417699999998733495799972652389999999867977435677078899999789


Q ss_pred             CCCCCEEEEEE-C-CEEEE
Q ss_conf             99787699982-9-95889
Q 029703          150 ISKMPTIQIWK-D-GEMKS  166 (189)
Q Consensus       150 i~~~Pt~~~~~-~-G~~~~  166 (189)
                      |.++||++++. + |+++.
T Consensus       106 v~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_         106 VKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEE
T ss_pred             CCCCCEEEEEECCCCEEEE
T ss_conf             8875879999699999985

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.50  E-value=5.3e-14  Score=86.56  Aligned_cols=73  Identities=14%  Similarity=0.220  Sum_probs=61.4

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----------------------------HHHHHH
Q ss_conf             0899499999569995443210999999998279709999985587----------------------------188998
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----------------------------SKDLVK  146 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~----------------------------~~~l~~  146 (189)
                      -.+|+++|.||++||++|+...|.+.++.++|++++.++.++.+..                            ...+++
T Consensus        30 ~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~  109 (187)
T d2cvba1          30 FHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAK  109 (187)
T ss_dssp             CCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHH
T ss_pred             HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHCC
T ss_conf             58983999984777764013432220012220343135542011233322221477888898709863256540554200


Q ss_pred             HCCCCCCCEEEEEE-CCEEEEE
Q ss_conf             68999787699982-9958899
Q 029703          147 RGNISKMPTIQIWK-DGEMKSE  167 (189)
Q Consensus       147 ~~~i~~~Pt~~~~~-~G~~~~~  167 (189)
                      .|++.++|+++++. +|+++.+
T Consensus       110 ~~~v~~~P~~~liD~~G~i~y~  131 (187)
T d2cvba1         110 AYRALRTPEVFLFDERRLLRYH  131 (187)
T ss_dssp             HTTCCEESEEEEECTTCBEEEE
T ss_pred             CCCCCCEEEEEEECCCCEEEEE
T ss_conf             2464310257998689829987

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.50  E-value=2.5e-13  Score=83.23  Aligned_cols=89  Identities=15%  Similarity=0.382  Sum_probs=73.1

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH---------------------HHHHHHCCCCC
Q ss_conf             089949999956999544321099999999827-97099999855871---------------------88998689997
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------KDLVKRGNISK  152 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------~~l~~~~~i~~  152 (189)
                      -.+++++|+||++||++|+...+.+.++.+++. .++.++.++.+...                     ..++..|++.+
T Consensus        23 ~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  102 (137)
T d1st9a_          23 LKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  102 (137)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCS
T ss_pred             HCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf             69997999874013221552266531011111222100011232200245788998729984322000100355540056


Q ss_pred             CCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             87699982-995889984887500169999999984
Q 029703          153 MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       153 ~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      +|+++++. +|+++.++.|..+.    +.+.++++.
T Consensus       103 ~P~~~liD~~G~i~~~~~G~~~~----~~~~~~l~~  134 (137)
T d1st9a_         103 LPTTFLINPEGKVVKVVTGTMTE----SMIHDYMNL  134 (137)
T ss_dssp             SCEEEEECTTSEEEEEEESCCCH----HHHHHHHHH
T ss_pred             CCEEEEECCCCEEEEEEECCCCH----HHHHHHHHH
T ss_conf             62499999999999999798999----999999986

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.49  E-value=1.2e-13  Score=84.71  Aligned_cols=73  Identities=18%  Similarity=0.418  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCH-----------------------HHHHHHCC
Q ss_conf             089949999956999544321099999999827--97099999855871-----------------------88998689
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVS-----------------------KDLVKRGN  149 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~-----------------------~~l~~~~~  149 (189)
                      -.+|+++|+||++||++|+...|.+.++++++.  .++.++.|+.+...                       ..+.+.|+
T Consensus        26 ~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~  105 (144)
T d1o73a_          26 LVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             HCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCC
T ss_conf             69988999867212865124407899999987524674899972103279999999863465335643622789999749


Q ss_pred             CCCCCEEEEEE-C-CEEEEE
Q ss_conf             99787699982-9-958899
Q 029703          150 ISKMPTIQIWK-D-GEMKSE  167 (189)
Q Consensus       150 i~~~Pt~~~~~-~-G~~~~~  167 (189)
                      |.++|+++++. + |+++.+
T Consensus       106 v~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         106 VESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEES
T ss_pred             CCCCCEEEEEECCCCEEEEE
T ss_conf             88689899997999999843

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.41  E-value=1.6e-12  Score=79.18  Aligned_cols=92  Identities=20%  Similarity=0.369  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCC-HH--------------------------HHHH
Q ss_conf             089949999956999544321099999999827-9709999985587-18--------------------------8998
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV-SK--------------------------DLVK  146 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~-~~--------------------------~l~~  146 (189)
                      -.+|+++|+||++||++|+...+.+.++.+.+. ..+.++.+..+.. ++                          .+..
T Consensus        54 ~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  133 (176)
T d1jfua_          54 FRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKA  133 (176)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHT
T ss_pred             HCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
T ss_conf             49997999831576664589987653012221223333211210012034555567650875305640420178998764


Q ss_pred             HCCCCCCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             68999787699982-9958899848875001699999999842
Q 029703          147 RGNISKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       147 ~~~i~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      .+++.++|+++++. +|+++.++.|.....  .+++.+.|+..
T Consensus       134 ~~~v~~~P~~~lID~~G~I~~~~~G~~~~~--~~e~~~~l~al  174 (176)
T d1jfua_         134 IGRALGMPTSVLVDPQGCEIATIAGPAEWA--SEDALKLIRAA  174 (176)
T ss_dssp             TTCCSSSSEEEEECTTSBEEEEEESCCCTT--SHHHHHHHHHH
T ss_pred             HCCCCCCCEEEEECCCCEEEEEEECCCCCC--HHHHHHHHHHH
T ss_conf             415777776999949998999997888888--59999999984

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.39  E-value=2.3e-12  Score=78.41  Aligned_cols=72  Identities=19%  Similarity=0.399  Sum_probs=59.2

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CEEEEEEECCCCH-----------------------HHHHHHCC
Q ss_conf             0899499999569995443210999999998279--7099999855871-----------------------88998689
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVS-----------------------KDLVKRGN  149 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~-----------------------~~l~~~~~  149 (189)
                      -.+|+++|+||++||++|+...+.+.++.+++..  .+.++.++.+...                       ..+.+.|+
T Consensus        24 l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~  103 (144)
T d1o8xa_          24 LAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN  103 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT
T ss_pred             HCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCC
T ss_conf             49999999941544664000110067765300112100012345211178899887640355246530431156798748


Q ss_pred             CCCCCEEEEEE-C-CEEEE
Q ss_conf             99787699982-9-95889
Q 029703          150 ISKMPTIQIWK-D-GEMKS  166 (189)
Q Consensus       150 i~~~Pt~~~~~-~-G~~~~  166 (189)
                      |.++||++++. + |+++.
T Consensus       104 v~~~Pt~~liD~~~G~Vi~  122 (144)
T d1o8xa_         104 VESIPTLIGVDADSGDVVT  122 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEE
T ss_pred             CCCCCEEEEEECCCCEEEE
T ss_conf             8867879999689999999

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=1.9e-12  Score=78.75  Aligned_cols=82  Identities=16%  Similarity=0.311  Sum_probs=66.4

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCC
Q ss_conf             08994999995699954432109999999982797099999855871889986899978769998299588998488750
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA  174 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~  174 (189)
                      ...-+++++|+++||++|+.+.+.++++...+  ...+..+|.+.++. +.++|++. +|++++  +|+.+  ..|..+.
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~--~~~~v~vd~~~~~~-l~~~y~~~-VPvl~i--dg~~~--~~g~~d~   84 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRF--ILQEVDITLPENST-WYERYKFD-IPVFHL--NGQFL--MMHRVNT   84 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSS--EEEEEETTSSTTHH-HHHHSSSS-CSEEEE--SSSEE--EESSCCH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CEEEEECCCCCCHH-HHHHHCCC-CCCEEE--CCCEE--EECCCCH
T ss_conf             79997899987999997599999999864323--56998635645799-99985665-773364--69647--9678999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             01699999999842
Q 029703          175 WLVIEEVREMIKKF  188 (189)
Q Consensus       175 ~~~~~~l~~~i~~~  188 (189)
                          ++|+++|++.
T Consensus        85 ----~~L~~~L~~l   94 (100)
T d1wjka_          85 ----SKLEKQLRKL   94 (100)
T ss_dssp             ----HHHHHHHHSS
T ss_pred             ----HHHHHHHHHH
T ss_conf             ----9999999997

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.21  E-value=2.6e-11  Score=73.05  Aligned_cols=76  Identities=8%  Similarity=0.139  Sum_probs=62.6

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHC---CCCCCCEEEEEE-CCEEEEEEEC
Q ss_conf             089949999956999544321099999999827970999998558718899868---999787699982-9958899848
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRG---NISKMPTIQIWK-DGEMKSEVIG  170 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~---~i~~~Pt~~~~~-~G~~~~~~~g  170 (189)
                      -+++..++.||++||+||+...|.+.++++.+ +++.+..|+.+.... ....|   +...+|.++++. ++....++.+
T Consensus        52 ~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~-~~~~~~~i~~d~~~~-~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~  129 (166)
T d1z6na1          52 IERRYRLLVAGEMWCPDCQINLAALDFAQRLQ-PNIELAIISKGRAED-DLRQRLALERIAIPLVLVLDEEFNLLGRFVE  129 (166)
T ss_dssp             CCSCEEEEEECCTTCHHHHHHHHHHHHHHHHC-TTEEEEEECHHHHHH-HTTTTTTCSSCCSSEEEEECTTCCEEEEEES
T ss_pred             HCCCEEEEEEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEEECCCCHH-HHHHHHHHCCCCCCCEEECCCCCHHCCCCCC
T ss_conf             56982999999296852899999999999878-998179997766877-8888877415532314553753001011123


Q ss_pred             CC
Q ss_conf             87
Q 029703          171 GH  172 (189)
Q Consensus       171 ~~  172 (189)
                      ..
T Consensus       130 ~P  131 (166)
T d1z6na1         130 RP  131 (166)
T ss_dssp             SC
T ss_pred             CC
T ss_conf             23

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=7.2e-09  Score=60.84  Aligned_cols=101  Identities=16%  Similarity=0.156  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH--------------------H
Q ss_conf             5799999996308994999995-699954432109999999982797099999855871--------------------8
Q 029703           84 DHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--------------------K  142 (189)
Q Consensus        84 ~~~~~~~~~a~~~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~--------------------~  142 (189)
                      -.+.++.    ..++.++++|| +.||++|....+.+.+...++...+.++.|..+...                    .
T Consensus        24 ~~l~~~~----~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~   99 (156)
T d2a4va1          24 ISLKKIT----ENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKR   99 (156)
T ss_dssp             EEHHHHH----HHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTC
T ss_pred             EEEHHHC----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCCCEECCCHHH
T ss_conf             9608973----874489997212356863001047888889998643512000131146677651134764202143679


Q ss_pred             HHHHHCCCCCCC------EEEEEECCEEEEEEECCCCCHH---HHHHHHHHHHHH
Q ss_conf             899868999787------6999829958899848875001---699999999842
Q 029703          143 DLVKRGNISKMP------TIQIWKDGEMKSEVIGGHKAWL---VIEEVREMIKKF  188 (189)
Q Consensus       143 ~l~~~~~i~~~P------t~~~~~~G~~~~~~~g~~~~~~---~~~~l~~~i~~~  188 (189)
                      .+++.|++...|      +++++.+|+...++.+......   ..+++.++++++
T Consensus       100 ~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~~~~~~~~~~~~~~~evl~~lk~l  154 (156)
T d2a4va1         100 EFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF  154 (156)
T ss_dssp             HHHHHHTCBSSSSSCBCCEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             9999759972136872379999978869999999689988136999999999986

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.88  E-value=8.6e-09  Score=60.44  Aligned_cols=100  Identities=15%  Similarity=0.260  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH--------------------H
Q ss_conf             799999996308994999995-6999544321099999999827-97099999855871--------------------8
Q 029703           85 HLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------K  142 (189)
Q Consensus        85 ~~~~~~~~a~~~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~  142 (189)
                      ++.+..    ..+|+++|.|| +.||++|....+.+.++...+. ..+.++.+..+...                    .
T Consensus        22 ~Lsd~~----~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~   97 (160)
T d2cx4a1          22 NLYEVL----KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNR   97 (160)
T ss_dssp             EHHHHH----TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTS
T ss_pred             EHHHHH----HCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCC
T ss_conf             669976----0899899981235347741322123311333211212222210245324444430243156777654873


Q ss_pred             HHHHHCCC----------CCCCEEEEEE-CCEEEEEEECCC-----CCHHHHHHHHHHHHHH
Q ss_conf             89986899----------9787699982-995889984887-----5001699999999842
Q 029703          143 DLVKRGNI----------SKMPTIQIWK-DGEMKSEVIGGH-----KAWLVIEEVREMIKKF  188 (189)
Q Consensus       143 ~l~~~~~i----------~~~Pt~~~~~-~G~~~~~~~g~~-----~~~~~~~~l~~~i~~~  188 (189)
                      .+++.|++          ...|+++++. +|++..++.+..     +...+.+.+.+++.++
T Consensus        98 ~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~e~  159 (160)
T d2cx4a1          98 EVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAGEL  159 (160)
T ss_dssp             HHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHTTT
T ss_pred             CHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             23988395011124665320326999968998999998079889889999999999871544

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=1.2e-08  Score=59.75  Aligned_cols=93  Identities=12%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             CCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH------------------------HHHHHHC
Q ss_conf             08994999995-6999544321099999999827-97099999855871------------------------8899868
Q 029703           95 ELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS------------------------KDLVKRG  148 (189)
Q Consensus        95 ~~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~------------------------~~l~~~~  148 (189)
                      -.+|.++++|| +.||++|....+.+.+...++. ..+.++.+..+...                        ..+++.|
T Consensus        42 ~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~y  121 (169)
T d2bmxa1          42 HPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA  121 (169)
T ss_dssp             STTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHH
T ss_pred             HCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHC
T ss_conf             79996999986577885001135531012200123575012012310455654211112335402899734178999982


Q ss_pred             CC-----CCCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             99-----9787699982-995889984887500169999999984
Q 029703          149 NI-----SKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       149 ~i-----~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      +|     ...|+.+++. +|++...+.+....+...+++.+.|+.
T Consensus       122 gv~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         122 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             997357862006999958997999998288889899999999998

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.75  E-value=2.6e-08  Score=58.04  Aligned_cols=88  Identities=13%  Similarity=0.315  Sum_probs=64.9

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC--CH-------------------------------
Q ss_conf             089949999956999544321099999999827970999998558--71-------------------------------
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VS-------------------------------  141 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~--~~-------------------------------  141 (189)
                      .+.++.+|.|.+..|++|+.+.+.+..+.+++...+.+......-  .+                               
T Consensus        16 ~~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (181)
T d1beda_          16 ASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHT   95 (181)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             89998899998889946565653026676523455523588413666444799999999999954014689999999987


Q ss_pred             -----------------------------------------HHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHH
Q ss_conf             -----------------------------------------889986899978769998299588998488750016999
Q 029703          142 -----------------------------------------KDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEE  180 (189)
Q Consensus       142 -----------------------------------------~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~  180 (189)
                                                               ...+++++|+++||+++  ||+.+....+..+.    +.
T Consensus        96 ~~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk~~v~~~~~~~~----~~  169 (181)
T d1beda_          96 LRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSVKSL----DE  169 (181)
T ss_dssp             SCCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCCSH----HH
T ss_pred             HCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCEEEECCCCCCCH----HH
T ss_conf             5034105899999998712789999999727678999999999999949861668999--99996078777799----99


Q ss_pred             HHHHHHHH
Q ss_conf             99999842
Q 029703          181 VREMIKKF  188 (189)
Q Consensus       181 l~~~i~~~  188 (189)
                      +.+.|+.+
T Consensus       170 l~~~i~~L  177 (181)
T d1beda_         170 YFDLVNYL  177 (181)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999999

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.74  E-value=3.4e-08  Score=57.47  Aligned_cols=92  Identities=11%  Similarity=0.151  Sum_probs=64.0

Q ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCC-CEEEEEEECCCCH---------------------------HHHHH
Q ss_conf             8994999995-69995443210999999998279-7099999855871---------------------------88998
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS---------------------------KDLVK  146 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~---------------------------~~l~~  146 (189)
                      .+|++||+|| +.||++|....+.+.+..+++.. .+.++.+..+...                           ..+++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~  111 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR  111 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             99969999712555534104667899989986257448986327847767887756777455455456501134219999


Q ss_pred             HCCCC------CCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             68999------787699982-995889984887500169999999984
Q 029703          147 RGNIS------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       147 ~~~i~------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      .|++.      ..|+..++. +|++...+.+....+.-.+++.+.|+.
T Consensus       112 ~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a  159 (167)
T d1e2ya_         112 AYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA  159 (167)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             829972557971369999878988999997389889999999999998

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=9.6e-08  Score=55.19  Aligned_cols=84  Identities=11%  Similarity=0.185  Sum_probs=63.3

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH----------------------------------
Q ss_conf             8994999995699954432109999999982797099999855871----------------------------------
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------------------------------  141 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------------------------------  141 (189)
                      +.+..++.|+.+.||+|+.+.+.++++.+.  +++.+..++..-..                                  
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~--~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~  112 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNV  112 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC
T ss_conf             999899998899980148999999998742--452699976566783239998899863479999999998510134455


Q ss_pred             ---------------HHHHHHCCCCCCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             ---------------8899868999787699982-99588998488750016999999998
Q 029703          142 ---------------KDLVKRGNISKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       142 ---------------~~l~~~~~i~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                                     ..+++.++|+++||+++.. +| ....+.|..+.    +.|.+.+.
T Consensus       113 ~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g-~~~~~~G~~~~----~~l~~il~  168 (169)
T d1v58a1         113 PANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKEN-TLQQAVGLPDQ----KTLNIIMG  168 (169)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTT-EEEEEESSCCH----HHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC-CEEEECCCCCH----HHHHHHHC
T ss_conf             2110488999999999999965999898799988998-77883599999----99999856

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.66  E-value=1.3e-07  Score=54.53  Aligned_cols=84  Identities=21%  Similarity=0.218  Sum_probs=62.7

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCHH------------------------------
Q ss_conf             089949999956999544321099999999827--970999998558718------------------------------
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSK------------------------------  142 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~~------------------------------  142 (189)
                      .+.+..++.|....||+|+.+.+.+.++.+++.  ..+.+........+.                              
T Consensus        22 ~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  101 (172)
T d1z6ma1          22 SNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFAT  101 (172)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99998999998899874899999875454430245622453045446621029999999999973524589999999872


Q ss_pred             -----------------------------------HHHHHCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             -----------------------------------899868999787699982995889984887500169999999984
Q 029703          143 -----------------------------------DLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       143 -----------------------------------~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                                                         ..+++++|+++||+++  ||+.   +.|..+.    +++.++|++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~~---~~g~~~~----~~~~~~id~  172 (172)
T d1z6ma1         102 QDEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI---FDESVTE----EELRGYIEK  172 (172)
T ss_dssp             HHHHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE---ECTTCCH----HHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE--CCEE---ECCCCCH----HHHHHHHCC
T ss_conf             011236789999999876543103777888999999999849972898989--9998---0598999----999999749

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.63  E-value=3.3e-07  Score=52.48  Aligned_cols=93  Identities=11%  Similarity=0.146  Sum_probs=67.9

Q ss_pred             CCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH--------------------------HHHHH
Q ss_conf             08994999995-6999544321099999999827-97099999855871--------------------------88998
Q 029703           95 ELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------------KDLVK  146 (189)
Q Consensus        95 ~~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------------~~l~~  146 (189)
                      ..++.++++|| +.||+.|....+.+.+...++. ..+.++.+.+|...                          ..+++
T Consensus        27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak  106 (237)
T d2zcta1          27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVAR  106 (237)
T ss_dssp             TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHH
T ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             49997999998887896587888778764021015784134003776788877766656403434446623483269999


Q ss_pred             HCCC-------CCCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             6899-------9787699982-995889984887500169999999984
Q 029703          147 RGNI-------SKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       147 ~~~i-------~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      .|++       ...|+++++. +|++...+....+.+.-.+++...|+.
T Consensus       107 ~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~a  155 (237)
T d2zcta1         107 RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKA  155 (237)
T ss_dssp             HTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             8599622355531034699889998999998079877798999999999

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=4.7e-08  Score=56.77  Aligned_cols=83  Identities=16%  Similarity=0.293  Sum_probs=59.8

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECC--CC--------------------------------
Q ss_conf             08994999995699954432109999999982797099999855--87--------------------------------
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN--KV--------------------------------  140 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~--~~--------------------------------  140 (189)
                      .+.+.+++.|+.+.||+|+++.+.+.++.+.   ++.+.....-  ..                                
T Consensus        24 ~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~---~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  100 (156)
T d1eeja1          24 PQEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP  100 (156)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHCC---CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             9887799998589987899887777876324---7628999614543103668999999986514555678871564334


Q ss_pred             ---------HHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             ---------188998689997876999829958899848875001699999999842
Q 029703          141 ---------SKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       141 ---------~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                               ...+++.++|+++||++ +.+|+.   +.|..+.    +.|.++|++.
T Consensus       101 ~~~~~~i~~~~~la~~lgv~GTPt~~-~~nG~~---v~G~~~~----e~l~~~i~~~  149 (156)
T d1eeja1         101 ASCDVDIADHYALGVQLGVSGTPAVV-LSNGTL---VPGYQPP----KEMKEFLDEH  149 (156)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCSSSEEE-CTTSCE---EESCCCH----HHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHCCCCCCCEEE-EECCEE---ECCCCCH----HHHHHHHHHH
T ss_conf             54301278999999984986888799-719958---2598999----9999999999

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.1e-07  Score=53.44  Aligned_cols=46  Identities=15%  Similarity=0.123  Sum_probs=40.0

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC-CEEEEEEECCCC
Q ss_conf             0899499999569995443210999999998279-709999985587
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV  140 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~  140 (189)
                      -.+|+++|.++|+||++|.+..+.|+++.++|++ .+.++.+.+++.
T Consensus        22 ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF   68 (184)
T d2f8aa1          22 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQF   68 (184)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCS
T ss_pred             CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf             29988999995466876555507999754543123315897403554

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.56  E-value=1.9e-07  Score=53.72  Aligned_cols=78  Identities=13%  Similarity=0.136  Sum_probs=59.4

Q ss_pred             CCCCCEEEEEEC-CCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH------------------------HHHHHHC
Q ss_conf             089949999956-999544321099999999827-97099999855871------------------------8899868
Q 029703           95 ELSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS------------------------KDLVKRG  148 (189)
Q Consensus        95 ~~~k~~vv~f~a-~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~------------------------~~l~~~~  148 (189)
                      -.+|.++|+||. .||++|....+.+.+...++. ..+.++.|..+...                        ..+++.|
T Consensus        29 ~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~y  108 (166)
T d1we0a1          29 LKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (166)
T ss_dssp             TSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             HCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             59986999984056780889999999987776415646998404556777777763134312445664458646899982


Q ss_pred             CCC------CCCEEEEEE-CCEEEEEEECCC
Q ss_conf             999------787699982-995889984887
Q 029703          149 NIS------KMPTIQIWK-DGEMKSEVIGGH  172 (189)
Q Consensus       149 ~i~------~~Pt~~~~~-~G~~~~~~~g~~  172 (189)
                      ++.      ..|+.+++. +|.+...+.+..
T Consensus       109 gv~~~~~~~~~r~tfvID~~G~I~~~~i~~~  139 (166)
T d1we0a1         109 DVLNEETGLADRGTFIIDPDGVIQAIEINAD  139 (166)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECT
T ss_pred             CCCCCCCCCCCCEEEEECCCCCEEEEEECCC
T ss_conf             8976446865114899889994899997688

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.52  E-value=7.2e-08  Score=55.81  Aligned_cols=84  Identities=14%  Similarity=0.248  Sum_probs=60.2

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-H--------------------------------
Q ss_conf             0899499999569995443210999999998279709999985587-1--------------------------------
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-S--------------------------------  141 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~-~--------------------------------  141 (189)
                      .+.+.+++.|+.+.||+|+++.+.+..+.+.. ..+.+........ +                                
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~  102 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLHQQLKEYNDLG-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK  102 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTTHHHHHHTT-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             99888999997899878998867788773368-55999984156533467899999997565887667676420321122


Q ss_pred             --------HHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             --------8899868999787699982995889984887500169999999984
Q 029703          142 --------KDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       142 --------~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                              ..+++.++|+++||+++ .||+.   +.|..+.    ++|.++|++
T Consensus       103 ~~~~i~~~~~la~~lGv~GTPt~~~-~nG~~---i~G~~~~----~~l~~~l~~  148 (150)
T d1t3ba1         103 TPNIVKKHYELGIQFGVRGTPSIVT-STGEL---IGGYLKP----ADLLRALEE  148 (150)
T ss_dssp             CSSHHHHHHHHHHHHTCCSSCEEEC-TTSCC---CCSCCCH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEE-CCCCE---ECCCCCH----HHHHHHHHH
T ss_conf             3158999999998638677877997-59828---6698999----999999985

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.51  E-value=5.1e-07  Score=51.57  Aligned_cols=93  Identities=9%  Similarity=0.096  Sum_probs=67.2

Q ss_pred             CCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCC---------------------------HHHHH
Q ss_conf             08994999995-6999544321099999999827-9709999985587---------------------------18899
Q 029703           95 ELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV---------------------------SKDLV  145 (189)
Q Consensus        95 ~~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~---------------------------~~~l~  145 (189)
                      -.+|.+|++|| +.||+.|......+.++..++. ..+.++.|..+..                           ...++
T Consensus        31 ~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~  110 (194)
T d1uula_          31 YKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIM  110 (194)
T ss_dssp             GTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             HCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHH
T ss_conf             69994999999377655431120678865554246745999970586200356655566642225777661108831699


Q ss_pred             HHCCC------CCCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             86899------9787699982-995889984887500169999999984
Q 029703          146 KRGNI------SKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       146 ~~~~i------~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      +.|++      ...|+..++. +|.+...+......+...+++...|+.
T Consensus       111 ~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         111 KSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHCCCEECCCCCEEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             9829821668946779999789976999998467778289999999997

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=98.51  E-value=4.8e-07  Score=51.68  Aligned_cols=92  Identities=10%  Similarity=0.138  Sum_probs=63.6

Q ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH---------------------------HHHHH
Q ss_conf             8994999995-6999544321099999999827-97099999855871---------------------------88998
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------------KDLVK  146 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------------~~l~~  146 (189)
                      .+++++++|| +.||+.|....+.+.+...++. ..+.++.|..+...                           ..+++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~  111 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf             99879999975403786999999998767764158826843544205667888865421054467563320465018999


Q ss_pred             HCCCC-----CCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             68999-----787699982-995889984887500169999999984
Q 029703          147 RGNIS-----KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       147 ~~~i~-----~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      .|++.     ..|+.+++. +|++...+.+......-.+++.+.|+.
T Consensus       112 ~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~a  158 (170)
T d1zofa1         112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA  158 (170)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred             HCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             75997566412578999837876999998089989899999999998

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.44  E-value=1.1e-06  Score=49.87  Aligned_cols=92  Identities=14%  Similarity=0.163  Sum_probs=64.1

Q ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH---------------------------HHHHH
Q ss_conf             8994999995-6999544321099999999827-97099999855871---------------------------88998
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------------KDLVK  146 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------------~~l~~  146 (189)
                      .+|+++++|| +.||+.|....+.+.+...++. ....++.|..+...                           ..+++
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  104 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  104 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCEEEEEEEEHHCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf             99829999960431975004433577768986147834774057679999988861676353466254433356318888


Q ss_pred             HCCCC------CCCEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             68999------78769998-2995889984887500169999999984
Q 029703          147 RGNIS------KMPTIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       147 ~~~i~------~~Pt~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      .|++.      ..|+..++ ++|++...+.+....+...+++.+.|+.
T Consensus       105 ~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lka  152 (158)
T d1zyea1         105 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA  152 (158)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             877512457845317999899998999998089989899999999997

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=1.5e-06  Score=49.23  Aligned_cols=93  Identities=8%  Similarity=0.023  Sum_probs=61.0

Q ss_pred             CCCCEEEEE-ECCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH----------------------HHHHHHCCCC
Q ss_conf             899499999-56999544321099999999827-97099999855871----------------------8899868999
Q 029703           96 LSQPILIDW-MASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS----------------------KDLVKRGNIS  151 (189)
Q Consensus        96 ~~k~~vv~f-~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~----------------------~~l~~~~~i~  151 (189)
                      .++++++.| ++.||++|....+.+.+..+++. .++.++.+..+...                      ..+++.|++.
T Consensus        28 g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~  107 (153)
T d1xvwa1          28 GAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF  107 (153)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             99727998645434663011003455431212022211222452014689988645134406985033321068874201


Q ss_pred             ------CCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             ------787699982-9958899848875001699999999842
Q 029703          152 ------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       152 ------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                            ..|+.+++. +|++...+.+..........+.+.|..+
T Consensus       108 ~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL  151 (153)
T d1xvwa1         108 NEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL  151 (153)
T ss_dssp             ETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred             HHCCCCEEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             21268614269999899979999981798546889999999862

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.6e-06  Score=47.97  Aligned_cols=94  Identities=14%  Similarity=0.207  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEECCCCH-HHHHHHHHHHHHHHHHC-----CCEEEEEEECCCCH---------------------------
Q ss_conf             0899499999569995-44321099999999827-----97099999855871---------------------------
Q 029703           95 ELSQPILIDWMASWCR-KCIYLKPKLEKLAAEFD-----TKLKFYYVDVNKVS---------------------------  141 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~-~C~~~~~~l~~~~~~~~-----~~v~~~~vd~~~~~---------------------------  141 (189)
                      -.+|+++|+|+.+||+ .|....+.+.++.+.+.     ..+.+..+..+...                           
T Consensus        18 ~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (160)
T d1wp0a1          18 YLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEV   97 (160)
T ss_dssp             GTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHH
T ss_pred             HCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf             69998999997777765433203778999998620124443100011257776548888877763188753025756776


Q ss_pred             HHHHHHCCCCC---------------CCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             88998689997---------------87699982-9958899848875001699999999842
Q 029703          142 KDLVKRGNISK---------------MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       142 ~~l~~~~~i~~---------------~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      ..+...|++..               .++++++. +|+++.++.+..+.+.+.+.|.+.|+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk~~  160 (160)
T d1wp0a1          98 DQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY  160 (160)
T ss_dssp             HHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHEEEECCCCCCCCCCEEECCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             677653311310146777787257500028999899859999799999899999999998609

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=2.5e-06  Score=48.07  Aligned_cols=76  Identities=7%  Similarity=0.101  Sum_probs=55.6

Q ss_pred             CCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----------------------HHHHHHHCCCC
Q ss_conf             08994999995-69995443210999999998279709999985587----------------------18899868999
Q 029703           95 ELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----------------------SKDLVKRGNIS  151 (189)
Q Consensus        95 ~~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~i~  151 (189)
                      -.+|++++.|| +.||++|....+.+.+++.++ +.+.++.|..+..                      ...+++.|++.
T Consensus        42 ~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~-~~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ygv~  120 (164)
T d1qxha_          42 FAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI-DNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVA  120 (164)
T ss_dssp             GTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTS-TTEEEEEEESSCHHHHTTCCSSTTCTTEEEEECTTCHHHHHHTTCB
T ss_pred             HCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCCEE
T ss_conf             689749999952410210657777899998752-3420246874878999999987388750500234650467756817


Q ss_pred             ---------CCCEEEEEE-CCEEEEEEECC
Q ss_conf             ---------787699982-99588998488
Q 029703          152 ---------KMPTIQIWK-DGEMKSEVIGG  171 (189)
Q Consensus       152 ---------~~Pt~~~~~-~G~~~~~~~g~  171 (189)
                               ..|+++++. +|++.......
T Consensus       121 ~~~~~~~g~~~ra~fvID~~G~I~y~~~~~  150 (164)
T d1qxha_         121 IADGPLKGLAARAVVVIDENDNVIFSQLVD  150 (164)
T ss_dssp             BCSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             EECCCCCCCCCCEEEEECCCCEEEEEEECC
T ss_conf             605755575448899994999899999868

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=9.9e-07  Score=50.10  Aligned_cols=44  Identities=16%  Similarity=0.358  Sum_probs=31.8

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHH---HHCCCEEEEEEECCC
Q ss_conf             89949999956999544321099999999---827970999998558
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAA---EFDTKLKFYYVDVNK  139 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~---~~~~~v~~~~vd~~~  139 (189)
                      .+++.+|.|++-.||+|+.+.+.+..+.+   .....+.+...+...
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   63 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNF   63 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECSS
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             99977999977888504889788778888764157751799995476

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.29  E-value=1.8e-06  Score=48.83  Aligned_cols=98  Identities=14%  Similarity=0.179  Sum_probs=74.6

Q ss_pred             CCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCC--CCCCEEEE
Q ss_conf             9965799999996308994999995699954432109999999982797099999855871889986899--97876999
Q 029703           81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI--SKMPTIQI  158 (189)
Q Consensus        81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i--~~~Pt~~~  158 (189)
                      .+.+++....    ..+++.++.|+... .....+...+.++|+++++++.|+.+|.+.... ..+.|++  ...|.+++
T Consensus        11 ~~~~n~~~~~----~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~-~l~~~gl~~~~~P~~~i   84 (133)
T d2djka1          11 IGPETYSDYM----SAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGA-HAGNLNLKTDKFPAFAI   84 (133)
T ss_dssp             CCHHHHHHHH----HTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGG-GTTTTTCCSSSSSEEEE
T ss_pred             CCHHHHHHHH----CCCCCEEEEEECCC-HHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHH-HHHHHCCCCCCCCCEEE
T ss_conf             3742199996----38997899990793-479999999999999802945899970788299-99983677566884799


Q ss_pred             EE-CCEEEEEEE--CCCCCHHHHHHHHHHHHHH
Q ss_conf             82-995889984--8875001699999999842
Q 029703          159 WK-DGEMKSEVI--GGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       159 ~~-~G~~~~~~~--g~~~~~~~~~~l~~~i~~~  188 (189)
                      +. +++....+.  +..+.    +.|.+|++++
T Consensus        85 ~~~~~~~~~~~~~~~~i~~----~~i~~Fi~d~  113 (133)
T d2djka1          85 QEVAKNQKFPFDQEKEITF----EAIKAFVDDF  113 (133)
T ss_dssp             ECTTTCCBCCCCSSSCCCH----HHHHHHHHHH
T ss_pred             EECCCCCEECCCCCCCCCH----HHHHHHHHHH
T ss_conf             9758896535886455799----9999999999

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=4.2e-06  Score=46.96  Aligned_cols=98  Identities=17%  Similarity=0.249  Sum_probs=74.7

Q ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCC-CCEEEEEE
Q ss_conf             96579999999630899499999569995443210999999998279709999985587188998689997-87699982
Q 029703           82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISK-MPTIQIWK  160 (189)
Q Consensus        82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~-~Pt~~~~~  160 (189)
                      +.+++.+..    ..+.|.++.|+.+. ..-..+...+.++|+++++++.|+.+|.+.... ..+.||+.. .|.+++..
T Consensus         6 ~~~~~~~y~----~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~-~l~~fgl~e~~P~~~i~~   79 (125)
T d2b5ea3           6 DGSVFAQYV----ESGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGLMNFVSIDARKFGR-HAGNLNMKEQFPLFAIHD   79 (125)
T ss_dssp             CHHHHHHHH----HTTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTT-HHHHTTCCSCSSEEEEEE
T ss_pred             CHHHHHHHH----HCCCCEEEEEECCH-HHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHH-HHHHCCCCCCCCCEEEEE
T ss_conf             777799998----54999899994885-889999999999999836906999974377189-999869976688378985


Q ss_pred             -CCEEEEEEE-------------CCCCCHHHHHHHHHHHHHHC
Q ss_conf             -995889984-------------88750016999999998429
Q 029703          161 -DGEMKSEVI-------------GGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       161 -~G~~~~~~~-------------g~~~~~~~~~~l~~~i~~~l  189 (189)
                       .......+.             +..+.    +.|.+|+++++
T Consensus        80 ~~~~~ky~~~~~~~~~~~~~~~~~e~t~----~~i~~F~~d~l  118 (125)
T d2b5ea3          80 MTEDLKYGLPQLSEEAFDELSDKIVLES----KAIESLVKDFL  118 (125)
T ss_dssp             TTTTEEEECCCCCHHHHHTCCSCCCCCH----HHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHCCCCCCCCCCCH----HHHHHHHHHHH
T ss_conf             3557441132000000123455566789----99999999997

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.18  E-value=1.5e-05  Score=44.19  Aligned_cols=89  Identities=24%  Similarity=0.392  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEEC--CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH-HHHHHHCCCCCCCEEEEEECCEEE-EEEEC
Q ss_conf             089949999956--99954432109999999982797099999855871-889986899978769998299588-99848
Q 029703           95 ELSQPILIDWMA--SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPTIQIWKDGEMK-SEVIG  170 (189)
Q Consensus        95 ~~~k~~vv~f~a--~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~~~~~G~~~-~~~~g  170 (189)
                      .-.+++-+.++.  ..|+.|..+...+++++.. .+++.+...+.+... .+++++|+|...|++.+..+|+.. -||.|
T Consensus        19 ~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~G   97 (119)
T d1a8la1          19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFG   97 (119)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEES
T ss_pred             HCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEE
T ss_conf             579987999994688761379999999999962-8975999952676201457776066648659994599605369971


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q ss_conf             875001699999999842
Q 029703          171 GHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       171 ~~~~~~~~~~l~~~i~~~  188 (189)
                      ....    .++..||...
T Consensus        98 iP~G----hEf~SlilaI  111 (119)
T d1a8la1          98 LPAG----HEFAAFLEDI  111 (119)
T ss_dssp             CCCT----THHHHHHHHH
T ss_pred             CCCC----HHHHHHHHHH
T ss_conf             2671----5689999999

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=1.8e-05  Score=43.78  Aligned_cols=95  Identities=13%  Similarity=0.150  Sum_probs=61.5

Q ss_pred             CCCCCEEEEEECCCCHH-HHHHHHHHHHHHHHH----CCCEEEEEEECCCCH--H-------------------------
Q ss_conf             08994999995699954-432109999999982----797099999855871--8-------------------------
Q 029703           95 ELSQPILIDWMASWCRK-CIYLKPKLEKLAAEF----DTKLKFYYVDVNKVS--K-------------------------  142 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~-C~~~~~~l~~~~~~~----~~~v~~~~vd~~~~~--~-------------------------  142 (189)
                      -.+|++||.||..||++ |..+...+..+...+    ...+.+..+..+...  .                         
T Consensus        24 ~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (169)
T d2b7ka1          24 LLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVK  103 (169)
T ss_dssp             GTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHH
T ss_pred             HCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             79998999996653677321034443211100111355322034200233457665631000134554322233155555


Q ss_pred             HHH----------------HHCCCCCCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             899----------------868999787699982-99588998488750016999999998429
Q 029703          143 DLV----------------KRGNISKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKFV  189 (189)
Q Consensus       143 ~l~----------------~~~~i~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~l  189 (189)
                      ...                ..+.+...|++.++. +|+++.++.+..+.....+.|.+.|+++|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~ll  167 (169)
T d2b7ka1         104 NACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYV  167 (169)
T ss_dssp             HHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCC
T ss_pred             HHHHHHHEEEEECCCCCCCCCCEEECCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             5665431133412567766573463031279999998199997899997899999999999986

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.16  E-value=1.3e-05  Score=44.44  Aligned_cols=77  Identities=8%  Similarity=-0.009  Sum_probs=57.5

Q ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH------------------------HHHHHHCC
Q ss_conf             8994999995-6999544321099999999827-97099999855871------------------------88998689
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS------------------------KDLVKRGN  149 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~------------------------~~l~~~~~  149 (189)
                      .+|.++++|| +.||+.|....+.+.+...++. ..+.++.|..|...                        ..+++.|+
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG  108 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf             99969999980457986588999998765430466379985166688788777525333332235644468899999958


Q ss_pred             CC------CCCEEEEEE-CCEEEEEEECCC
Q ss_conf             99------787699982-995889984887
Q 029703          150 IS------KMPTIQIWK-DGEMKSEVIGGH  172 (189)
Q Consensus       150 i~------~~Pt~~~~~-~G~~~~~~~g~~  172 (189)
                      +.      ..|+.+++. +|.+...+....
T Consensus       109 v~~~~~g~~~r~tfiID~~G~Ir~~~v~~~  138 (186)
T d1n8ja_         109 NMREDEGLADRATFVVDPQGIIQAIEVTAE  138 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECT
T ss_pred             CCCCCCCCCEEEEEEECCHHEEEEEEECCC
T ss_conf             975347863346999871163899961278

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=98.16  E-value=1e-05  Score=45.06  Aligned_cols=92  Identities=11%  Similarity=0.180  Sum_probs=65.6

Q ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH---------------------------HHHHH
Q ss_conf             8994999995-6999544321099999999827-97099999855871---------------------------88998
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------------KDLVK  146 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------------~~l~~  146 (189)
                      .++++||+|| +.||+.|......+.+.++++. ..+.++.|..+...                           ..+++
T Consensus        26 g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  105 (170)
T d2h01a1          26 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  105 (170)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHH
T ss_conf             99869999988877976410047786554543058815742157759999867644565435555677616717659999


Q ss_pred             HCCCC-----CCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             68999-----787699982-995889984887500169999999984
Q 029703          147 RGNIS-----KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       147 ~~~i~-----~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      .|++.     ..++.+++. +|.+...+.+......-.+++.+.|+.
T Consensus       106 ~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~  152 (170)
T d2h01a1         106 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA  152 (170)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred             HHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             80995556632022689867986889998058889899999999998

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.2e-05  Score=40.78  Aligned_cols=98  Identities=13%  Similarity=0.175  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHCCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH---------------------
Q ss_conf             799999996308994999995-6999544321099999999827-97099999855871---------------------
Q 029703           85 HLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------  141 (189)
Q Consensus        85 ~~~~~~~~a~~~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------  141 (189)
                      .+.+..     .+++++++|| +.||+.|......+.+...++. ..+.++.+.++...                     
T Consensus        20 ~Lsd~~-----g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l   94 (220)
T d1prxa_          20 RFHDFL-----GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKL   94 (220)
T ss_dssp             EHHHHH-----TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCC
T ss_pred             EEHHHC-----CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             769986-----998699999789889755266799998787764046300034555554546665443111123655586


Q ss_pred             ---------HHHHHHCCCC------------CCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             ---------8899868999------------787699982-995889984887500169999999984
Q 029703          142 ---------KDLVKRGNIS------------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       142 ---------~~l~~~~~i~------------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                               ..+++.|++.            ..+++.++. +|.+..........+.-.+++...|+.
T Consensus        95 ~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~a  162 (220)
T d1prxa_          95 PFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVIS  162 (220)
T ss_dssp             SSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             30510586319999867856323555552245678999747653269999268866563889999998

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.2e-05  Score=42.53  Aligned_cols=91  Identities=10%  Similarity=0.121  Sum_probs=64.3

Q ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH---------------------------HHHHH
Q ss_conf             8994999995-6999544321099999999827-97099999855871---------------------------88998
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------------KDLVK  146 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------------~~l~~  146 (189)
                      .+|.++++|| ..||+.|......+.+...++. ..+.++.|..+...                           ..+++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~  112 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE  112 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCHHHHCCCCCCCCCEEECCCHHHHH
T ss_conf             99859999953103666325638999988874357737998735888998766504365467578763557345129999


Q ss_pred             HCCCC------CCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             68999------787699982-99588998488750016999999998
Q 029703          147 RGNIS------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       147 ~~~i~------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      .|++.      .+|+..++. +|.+..........+.-.+++...|+
T Consensus       113 ~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~  159 (197)
T d1qmva_         113 DYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQ  159 (197)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             HHCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             84997446884567999887998589998437885507889999988

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.03  E-value=2.3e-05  Score=43.23  Aligned_cols=91  Identities=7%  Similarity=-0.024  Sum_probs=58.7

Q ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH----------------------HHHHHHCCCCC
Q ss_conf             8994999995-699954432109999999982797099999855871----------------------88998689997
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------------------KDLVKRGNISK  152 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~i~~  152 (189)
                      .+|+++|.|| +.||+.|....+.+.+...++ ..+.++.|..+...                      ..+.+.|++..
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~-~~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~  119 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI  119 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred             CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHEEEC
T ss_conf             89679998554202453256577889998743-02416899956489999999980996123101342066777532412


Q ss_pred             --C----CEEEEEE-CCEEEEEEECCCC-CHHHHHHHHHHHHH
Q ss_conf             --8----7699982-9958899848875-00169999999984
Q 029703          153 --M----PTIQIWK-DGEMKSEVIGGHK-AWLVIEEVREMIKK  187 (189)
Q Consensus       153 --~----Pt~~~~~-~G~~~~~~~g~~~-~~~~~~~l~~~i~~  187 (189)
                        .    ++.+++. +|++.....+... ...-.+.+.+.+++
T Consensus       120 ~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~  162 (163)
T d1psqa_         120 NEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             CCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHC
T ss_conf             6665306789999999979999972788888999999999964

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.98  E-value=6.8e-05  Score=40.89  Aligned_cols=90  Identities=13%  Similarity=0.242  Sum_probs=57.9

Q ss_pred             CCCCCEEEEEECCCCH-HHHHHHHHHHHHHHHH---CCCEEEEEEECCCC---HH---HH--------------------
Q ss_conf             0899499999569995-4432109999999982---79709999985587---18---89--------------------
Q 029703           95 ELSQPILIDWMASWCR-KCIYLKPKLEKLAAEF---DTKLKFYYVDVNKV---SK---DL--------------------  144 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~-~C~~~~~~l~~~~~~~---~~~v~~~~vd~~~~---~~---~l--------------------  144 (189)
                      -.+|+++|+|+..||+ .|....+.+.++.+.+   ..++.++.|.+|-.   ++   ..                    
T Consensus        29 ~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~~~~~~~~~~w~~lt~~~~~  108 (172)
T d1xzoa1          29 LKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQS  108 (172)
T ss_dssp             GTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHH
T ss_pred             HCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCHHH
T ss_conf             69988999975553555321003024444554113332210102212111015999999998743564432352264588


Q ss_pred             ------HHHCCC-----------CCCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             ------986899-----------9787699982-99588998488750016999999998
Q 029703          145 ------VKRGNI-----------SKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       145 ------~~~~~i-----------~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                            .+.|++           ...|.++++. +|+++..|.|.....  .+++.+-|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~--~~~l~~dik  166 (172)
T d1xzoa1         109 EIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTP--YDDIISDVK  166 (172)
T ss_dssp             HHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCC--HHHHHHHHH
T ss_pred             HHHHHHHHHEEEEEECCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCC--HHHHHHHHH
T ss_conf             8999987540168852688860766668999959983999986999888--999999999

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.93  E-value=9.7e-05  Score=40.11  Aligned_cols=90  Identities=10%  Similarity=0.026  Sum_probs=55.3

Q ss_pred             CCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH---------------------HHHHHHCCCC-
Q ss_conf             08994999995-699954432109999999982797099999855871---------------------8899868999-
Q 029703           95 ELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---------------------KDLVKRGNIS-  151 (189)
Q Consensus        95 ~~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---------------------~~l~~~~~i~-  151 (189)
                      -.+|++|+.|| +.||+.|....+.+.+..+.+  .+.++.|..+...                     ..+...|++. 
T Consensus        41 ~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~--g~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  118 (166)
T d1xvqa_          41 FRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS--GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTI  118 (166)
T ss_dssp             GTTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT--TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBB
T ss_pred             HCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCEEE
T ss_conf             099489998530100223177899986331001--222222354338899999998388654332221677998737031


Q ss_pred             --------CCCEEEEEE-CCEEEEEEECCC-CCHHHHHHHHHHHH
Q ss_conf             --------787699982-995889984887-50016999999998
Q 029703          152 --------KMPTIQIWK-DGEMKSEVIGGH-KAWLVIEEVREMIK  186 (189)
Q Consensus       152 --------~~Pt~~~~~-~G~~~~~~~g~~-~~~~~~~~l~~~i~  186 (189)
                              ..|+++++. +|+++....... ....-.+++.+.|+
T Consensus       119 ~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~  163 (166)
T d1xvqa_         119 ADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALG  163 (166)
T ss_dssp             CSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             137633745657999938997999998278888889999999987

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=97.62  E-value=0.00027  Score=37.89  Aligned_cols=75  Identities=8%  Similarity=0.071  Sum_probs=54.0

Q ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH----------------------HHHHHHCCCC-
Q ss_conf             8994999995-699954432109999999982797099999855871----------------------8899868999-
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------------------KDLVKRGNIS-  151 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~i~-  151 (189)
                      .+|++++.|| +.||+.|....+.+.+...+++ ++.++.|..+...                      ..+...|++. 
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~-~~~vi~iS~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  119 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-NTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDI  119 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST-TEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEE
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCEEC
T ss_conf             995899996676444756177999999899742-5258863288388899999972876531023333404888605452


Q ss_pred             ------C--CCEEEEEE-CCEEEEEEECC
Q ss_conf             ------7--87699982-99588998488
Q 029703          152 ------K--MPTIQIWK-DGEMKSEVIGG  171 (189)
Q Consensus       152 ------~--~Pt~~~~~-~G~~~~~~~g~  171 (189)
                            +  .|+++++. +|+++......
T Consensus       120 ~~~~~~g~~~Ra~fvID~~G~I~y~~~~~  148 (164)
T d1q98a_         120 QTGPLAGLTSRAVIVLDEQNNVLHSQLVE  148 (164)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             CCCCCCCCCCCEEEEECCCCEEEEEEECC
T ss_conf             36755467435799999999899999878

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=7.6e-05  Score=40.65  Aligned_cols=75  Identities=24%  Similarity=0.365  Sum_probs=52.2

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH---HHHHHHC--CCCCCCEEEEEECCEEEEEEECCCCCH
Q ss_conf             99995699954432109999999982797099999855871---8899868--999787699982995889984887500
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRG--NISKMPTIQIWKDGEMKSEVIGGHKAW  175 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~--~i~~~Pt~~~~~~G~~~~~~~g~~~~~  175 (189)
                      +|.|..+||++|.+....|.++...+ ..+.+..++.+..+   ..+....  ++..+|.+.  .+|+.+   -|.    
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIf--i~g~~I---GG~----   72 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNER-DDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF--VDQQHI---GGY----   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHH-SSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEE--ETTEEE---ESS----
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCC-CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEE--ECCEEE---ECH----
T ss_conf             99995799976999999999829977-77339999657898999999998358999879899--999999---778----


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             1699999999842
Q 029703          176 LVIEEVREMIKKF  188 (189)
Q Consensus       176 ~~~~~l~~~i~~~  188 (189)
                         ++|.+++++.
T Consensus        73 ---~el~~~~~~~   82 (85)
T d1egoa_          73 ---TDFAAWVKEN   82 (85)
T ss_dssp             ---HHHHHHHHHH
T ss_pred             ---HHHHHHHHHC
T ss_conf             ---9999999863

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2e-05  Score=43.59  Aligned_cols=101  Identities=9%  Similarity=0.157  Sum_probs=55.7

Q ss_pred             CCCCCCCCCCCCCEECCCEEEEECC-CCC---------CCCCCCCEEEEECCCCCCCC-CCCEEECCCHHHHHHHHHHHH
Q ss_conf             8512479850010015743897089-864---------23466510343038999998-532232499657999999963
Q 029703           26 QPWSSGSSSCLLLQKNSAFFWVDTA-SRS---------KSARRDVRVEALWPDLSRPT-SVELEPINDSDHLDQILLRAQ   94 (189)
Q Consensus        26 ~~~~i~g~Ptl~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~a~   94 (189)
                      +.++|+|.||+.+  +|....-.+. +..         -...+.+..+...+....+. ..+...+..+           
T Consensus        44 ~~~gi~GtPtfiV--nGky~v~~~~~~~~~~~~~~~~~~~~~~~L~~k~~~~~~~~~~eG~~Y~~l~~p-----------  110 (195)
T d1un2a_          44 ADVQLRGVPAMFV--NGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKP-----------  110 (195)
T ss_dssp             HHTTCCSSSEEEE--TTTEEECGGGSCCSSHHHHHHHHHHHHHHHTC---------CCBTTTEEECSSC-----------
T ss_pred             HHHCCCCCCEEEE--CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCC-----------
T ss_conf             9838973887998--882650454225210025699999999999847444567787899751578888-----------


Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHH---HHHHHHCCCEEEEEEECCC
Q ss_conf             08994999995699954432109999---9999827970999998558
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNK  139 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~---~~~~~~~~~v~~~~vd~~~  139 (189)
                      ..+++.++.|++-+|++|..+.|.+.   ++.+.+.+++.|......-
T Consensus       111 ~~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~~  158 (195)
T d1un2a_         111 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNF  158 (195)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSS
T ss_pred             CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             999966999981699220011245557998875268773799973476

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.52  E-value=0.00028  Score=37.81  Aligned_cols=69  Identities=22%  Similarity=0.372  Sum_probs=48.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHH--HHHHHCCCCCCCEEEEEECCEEEEEEECCCCCHHHH
Q ss_conf             999956999544321099999999827970999998558718--899868999787699982995889984887500169
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK--DLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI  178 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~--~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~  178 (189)
                      ++.|..+||++|......|.+      .++.+..++++..++  ...+.++..++|.+.  .+|+.+   .|.. .    
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~------~~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~--i~g~~i---gGf~-~----   66 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR------AGLAYNTVDISLDDEARDYVMALGYVQAPVVE--VDGEHW---SGFR-P----   66 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH------TTCCCEEEETTTCHHHHHHHHHTTCBCCCEEE--ETTEEE---ESCC-H----
T ss_pred             EEEEECCCCHHHHHHHHHHHH------CCCCEEEEECCCCHHHHHHHHHHCCCCCCEEE--ECCEEE---ECCC-H----
T ss_conf             999948989608999999997------39964899724898999999984799709799--999999---5889-8----


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q 029703          179 EEVREMI  185 (189)
Q Consensus       179 ~~l~~~i  185 (189)
                      +.|.++.
T Consensus        67 d~l~~L~   73 (74)
T d1r7ha_          67 ERIKQLQ   73 (74)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             4998820

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.49  E-value=0.00024  Score=38.13  Aligned_cols=72  Identities=19%  Similarity=0.542  Sum_probs=53.4

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEECCC-CCHHHHHH
Q ss_conf             99956999544321099999999827970999998558718899868999787699982995889984887-50016999
Q 029703          102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGH-KAWLVIEE  180 (189)
Q Consensus       102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~-~~~~~~~~  180 (189)
                      |.+.++.|+.|..+....+++++++.-...+.++  ++..+ +. +|+|.++|.+++  ||+.+  +.|.. +.    ++
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~e-i~-~ygVmstPalvI--dg~vv--~~G~vPs~----~e   71 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQ-IL-EAGLTALPGLAV--DGELK--IMGRVASK----EE   71 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHH-HH-HHTCSSSSCEEE--TTEEE--ECSSCCCH----HH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE--CCHHH-HH-HCCCCCCCEEEE--CCEEE--EEECCCCH----HH
T ss_conf             9996899953789999999999975995599980--79999-98-759767887999--99999--97348999----99


Q ss_pred             HHHHH
Q ss_conf             99999
Q 029703          181 VREMI  185 (189)
Q Consensus       181 l~~~i  185 (189)
                      +.+||
T Consensus        72 i~~~L   76 (77)
T d1iloa_          72 IKKIL   76 (77)
T ss_dssp             HHHHC
T ss_pred             HHHHH
T ss_conf             99974

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.0005  Score=36.57  Aligned_cols=62  Identities=15%  Similarity=0.307  Sum_probs=44.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHH--HHHHHCCCCCCCEEEEEECCEEEEEEECCCC
Q ss_conf             999956999544321099999999827970999998558718--8998689997876999829958899848875
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK--DLVKRGNISKMPTIQIWKDGEMKSEVIGGHK  173 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~--~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~  173 (189)
                      ++.|..+||++|......|.+      ..+.+..+|++.+++  +..+..+..++|.+++  +|+.+   .|...
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~------~~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~i---~Gf~~   66 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMEN------RGFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLSW---SGFRP   66 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH------TTCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEEE---ESCCH
T ss_pred             EEEEECCCCCCHHHHHHHHHH------CCCEEEEEEECCCHHHHHHHHHCCCCCCCEEEE--CCEEE---ECCCH
T ss_conf             999938989537999999986------295368986058999999988617997798999--99999---77898

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.32  E-value=0.00012  Score=39.63  Aligned_cols=63  Identities=14%  Similarity=0.185  Sum_probs=43.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHH----HHHHHCCCCCCCEEEEEECCEEEE
Q ss_conf             999956999544321099999999827970999998558718----899868999787699982995889
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----DLVKRGNISKMPTIQIWKDGEMKS  166 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~----~l~~~~~i~~~Pt~~~~~~G~~~~  166 (189)
                      ++.|..+||++|......|.++.-.+ ..+.+..+|.+....    .+....+...+|.+.  -+|+.++
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~-~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIf--i~g~~IG   80 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKE-GLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF--IGKECIG   80 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT-TSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE--ETTEEEE
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEE--ECCEEEE
T ss_conf             99997799905999999999839844-4124652035664188888885036787676799--9997983

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.32  E-value=0.0012  Score=34.63  Aligned_cols=95  Identities=16%  Similarity=0.211  Sum_probs=68.9

Q ss_pred             EECCCHHHHHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEE
Q ss_conf             324996579999999630-8994999995699954432109999999982797099999855871889986899978769
Q 029703           78 EPINDSDHLDQILLRAQE-LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI  156 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~-~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~  156 (189)
                      ..|.+.++++.++    . .+..++|-|...--+   .....+.++|+.+.+.+.|+...   .. ++++.+++. .|++
T Consensus         2 ~~i~~~~e~~~F~----~~~d~v~VvGfF~~~~~---~~~~~F~~~A~~~rd~~~F~~t~---d~-~va~~~~v~-~~~v   69 (102)
T d1a8ya2           2 ELIEGERELQAFE----NIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPYIPFFATF---DS-KVAKKLTLK-LNEI   69 (102)
T ss_dssp             EEECSHHHHHHHT----TCCSSCEEEEECSSTTC---HHHHHHHHHHHHHTTTSCEEEEC---CH-HHHHHHCCC-TTCE
T ss_pred             EEECCHHHHHHHH----CCCCCEEEEEEECCCCC---HHHHHHHHHHHHCCCCCEEEEEC---CH-HHHHHCCCC-CCCE
T ss_conf             5525899999986----36898899999888882---78999999999717773599988---79-999983999-9977


Q ss_pred             EEEEC-CEEEEEEECC-CCCHHHHHHHHHHHHHH
Q ss_conf             99829-9588998488-75001699999999842
Q 029703          157 QIWKD-GEMKSEVIGG-HKAWLVIEEVREMIKKF  188 (189)
Q Consensus       157 ~~~~~-G~~~~~~~g~-~~~~~~~~~l~~~i~~~  188 (189)
                      ++|++ .+....+.|. .+.    +.|..||.++
T Consensus        70 vlfr~fde~~~~~~~~~~t~----~~i~~Fi~~n   99 (102)
T d1a8ya2          70 DFYEAFMEEPVTIPDKPNSE----EEIVNFVEEH   99 (102)
T ss_dssp             EEECTTCSSEEECSSSSCCH----HHHHHHHHHT
T ss_pred             EEEEECCCCCEECCCCCCCH----HHHHHHHHHH
T ss_conf             89611677753168998999----9999999982

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00071  Score=35.78  Aligned_cols=94  Identities=15%  Similarity=0.218  Sum_probs=68.5

Q ss_pred             EECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEE
Q ss_conf             32499657999999963089949999956999544321099999999827970999998558718899868999787699
Q 029703           78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus        78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      ..+.+.++++.++    ..+..++|-|..+--.   .....+.++++.+ +++.|+.+.-   . .++..+++.. |+++
T Consensus         3 ~~l~~~~~~e~f~----~~~~v~VVGfF~~~~~---~~~~~F~~~A~~~-~d~~F~~t~~---~-~v~~~~~v~~-~~Iv   69 (110)
T d1bjxa_           3 TTLPDGAAAESLV----ESSEVAVIGFFKDVES---DSAKQFLQAAEAI-DDIPFGITSN---S-DVFSKYQLDK-DGVV   69 (110)
T ss_dssp             EECCSHHHHHHHH----HHSSEEEEEECTTTTS---HHHHHHHHHHHHC-SSSCEEEECC---S-HHHHHTTCSS-CEEE
T ss_pred             EECCCHHHHHHHH----CCCCEEEEEEECCCCC---HHHHHHHHHHHHC-CCCEEEEECC---H-HHHHHCCCCC-CEEE
T ss_conf             0748899999986----0297399999768885---6899999999847-6753999878---9-9999749999-9699


Q ss_pred             EEECCEE-EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             9829958-899848875001699999999842
Q 029703          158 IWKDGEM-KSEVIGGHKAWLVIEEVREMIKKF  188 (189)
Q Consensus       158 ~~~~G~~-~~~~~g~~~~~~~~~~l~~~i~~~  188 (189)
                      +|++... ...+.|..+.    +.|..||..+
T Consensus        70 l~k~~de~~~~~~~~~~~----~~l~~fi~~~   97 (110)
T d1bjxa_          70 LFKKFDEGRNNFEGEVTK----ENLLDFIKHN   97 (110)
T ss_dssp             EEESSSSSBCCCCSCCCH----HHHHHHHHHH
T ss_pred             EECCCCCCCCCCCCCCCH----HHHHHHHHHC
T ss_conf             963677564346888788----9999999975

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.30  E-value=0.0011  Score=34.89  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCH---------------------------HHHHH
Q ss_conf             8994999995-6999544321099999999827-97099999855871---------------------------88998
Q 029703           96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------------KDLVK  146 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------------~~l~~  146 (189)
                      .++.++++|| +.||+.|......+.+...++. .++.++.+.+|...                           ..+++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~  108 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELAN  108 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf             99869999972778965514578888754442156468984147667677677641676456678771202452008999


Q ss_pred             HCCCC------------CCCEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             68999------------787699982-995889984887500169999999984
Q 029703          147 RGNIS------------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       147 ~~~i~------------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      .|++.            ..-++.++. +|++........+.+.-.+++...|+.
T Consensus       109 ~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~a  162 (219)
T d1xcca_         109 KLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKS  162 (219)
T ss_dssp             HHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             858965111367654414566699867533899999278766589999999999

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.23  E-value=0.00039  Score=37.11  Aligned_cols=72  Identities=15%  Similarity=0.170  Sum_probs=49.8

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHH
Q ss_conf             99995699954432109999999982797099999855871889986899978769998299588998488750016999
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEE  180 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~  180 (189)
                      +..|+.++|+.|......+.+   .  ..+.+-.+|++..+. +..+|+.. +|.+. +.++....   ..-+.    ++
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~---~--~~~~~~~vdI~~d~~-l~~~y~~~-IPVl~-~~~~~~l~---w~fd~----~~   66 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ---A--RAGAFFSVFIDDDAA-LESAYGLR-VPVLR-DPMGRELD---WPFDA----PR   66 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH---T--TCCCEEEEECTTCHH-HHHHHTTT-CSEEE-CTTCCEEE---SCCCH----HH
T ss_pred             EEEECCCCCCHHHHHHHHHHH---C--CCCCEEEEECCCCHH-HHHHHCCE-EEEEE-ECCEEEEC---CCCCH----HH
T ss_conf             899988996179999999986---0--698479997458999-99974980-13999-79913985---86599----99


Q ss_pred             HHHHHHH
Q ss_conf             9999984
Q 029703          181 VREMIKK  187 (189)
Q Consensus       181 l~~~i~~  187 (189)
                      |++|++.
T Consensus        67 l~~~L~~   73 (75)
T d1ttza_          67 LRAWLDA   73 (75)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
T ss_conf             9999854

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=97.06  E-value=0.001  Score=35.00  Aligned_cols=58  Identities=17%  Similarity=0.287  Sum_probs=41.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHH---HHHHHCCCCCCCEEEEEECCEEEE
Q ss_conf             999956999544321099999999827970999998558718---899868999787699982995889
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMKS  166 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~~  166 (189)
                      +..|..+||++|.+....|.+.      ++.+..+|++..+.   .+.+..+...+|.+.  .+|+.++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~--i~~~~IG   63 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHIG   63 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHC------CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEE--ECCEEEE
T ss_conf             8999479997599999999874------99817870522199999999984898788699--9998985

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.81  E-value=0.0084  Score=30.40  Aligned_cols=83  Identities=13%  Similarity=0.117  Sum_probs=57.1

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-----------H------HHHHHHCCCCCCCEEE
Q ss_conf             0899499999569995443210999999998279709999985587-----------1------8899868999787699
Q 029703           95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-----------S------KDLVKRGNISKMPTIQ  157 (189)
Q Consensus        95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~-----------~------~~l~~~~~i~~~Pt~~  157 (189)
                      ...+.++=+|.+.||+.|-.....+.++++.  +++..+..+++-.           +      ...+..++...+||=.
T Consensus         3 ~~~~aVVElFTSqgCssCPpAd~~L~~L~~~--~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq   80 (225)
T d2axoa1           3 EAVKGVVELFTSQGCASCPPADEALRKMIQK--GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQ   80 (225)
T ss_dssp             SCCCCEEEEEECTTCTTCHHHHHHHHHHHHH--TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSE
T ss_pred             CCCCCEEEEEECCCCCCCHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             7777189984379999978899999986178--98899996066000358778887812558999999860988777214


Q ss_pred             EEECCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             98299588998488750016999999998
Q 029703          158 IWKDGEMKSEVIGGHKAWLVIEEVREMIK  186 (189)
Q Consensus       158 ~~~~G~~~~~~~g~~~~~~~~~~l~~~i~  186 (189)
                      ++.+|+.  ...|...     ..+...|.
T Consensus        81 ~vvnG~~--~~~gs~~-----~~~~~~i~  102 (225)
T d2axoa1          81 AILNGRD--HVKGADV-----RGIYDRLD  102 (225)
T ss_dssp             EEETTTE--EEETTCH-----HHHHHHHH
T ss_pred             EEEECCC--CCCCCCH-----HHHHHHHH
T ss_conf             8980721--2363488-----89999999

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.78  E-value=0.0029  Score=32.72  Aligned_cols=57  Identities=14%  Similarity=0.148  Sum_probs=40.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHCCCCCCCEEEEEECCEEE
Q ss_conf             9999569995443210999999998279709999985587--1889986899978769998299588
Q 029703          101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV--SKDLVKRGNISKMPTIQIWKDGEMK  165 (189)
Q Consensus       101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~--~~~l~~~~~i~~~Pt~~~~~~G~~~  165 (189)
                      ++.|+.++|++|+++...|.+.      ++.+..++++..  ...+.+..+...+|.++  .+|+.+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~--i~g~~I   65 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQVF--IGGKHI   65 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEE--ETTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHCCCCCCEEE--ECCEEE
T ss_conf             8999789997799999999974------9972999716869999999982996588899--999899

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.55  E-value=0.00027  Score=37.93  Aligned_cols=44  Identities=5%  Similarity=0.048  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCC
Q ss_conf             358899773114334688512479850010015743897089864
Q 029703            9 SILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTASRS   53 (189)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~i~g~Ptl~~~~~~~~~~~~~~~~~   53 (189)
                      .+.+..+++... ..+|+.|+|.||||+.++++|....|.|.+..
T Consensus        67 ~v~~a~Vd~~~~-~~l~~~~~I~~yPTi~~f~~g~~~~y~G~r~~  110 (124)
T d1a8ya1          67 GVGFGLVDSEKD-AAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSA  110 (124)
T ss_dssp             TEEEEEEETTTS-HHHHHTTTCCSTTCEEEEESSSEEECCSCCSH
T ss_pred             CEEEEEEEEECC-CCHHHCCCCCCCCCEEEECCCCCEEEECCCCH
T ss_conf             759999874045-32000034545783788616752786379999

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.72  E-value=0.014  Score=29.34  Aligned_cols=69  Identities=13%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEE--C---CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHH---HHHHHCCCCCCCE
Q ss_conf             5799999996308994999995--6---999544321099999999827970999998558718---8998689997876
Q 029703           84 DHLDQILLRAQELSQPILIDWM--A---SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPT  155 (189)
Q Consensus        84 ~~~~~~~~~a~~~~k~~vv~f~--a---~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt  155 (189)
                      ..++.++     ++.+++| |.  +   |.|+.|.+....|..    +  .+.+..+|++..++   .+....+...+|.
T Consensus         6 ~~i~~~i-----~~~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~----~--~i~~~~~~v~~~~~~~~~l~~~t~~~TvPq   73 (109)
T d1wika_           6 SGLKVLT-----NKASVML-FMKGNKQEAKCGFSKQILEILNS----T--GVEYETFDILEDEEVRQGLKTFSNWPTYPQ   73 (109)
T ss_dssp             CCHHHHH-----TTSSEEE-EESSTTTCCCSSTHHHHHHHHHH----T--CSCEEEEESSSCHHHHHHHHHHHSCCSSCE
T ss_pred             HHHHHHH-----HCCCEEE-EECCCCCCCCCHHHHHHHHHHHH----C--CCCCEEEEECCCHHHHHHHHHHCCCCCCCE
T ss_conf             9999998-----5398899-96789999988389999999996----0--788549975341778999998559997886


Q ss_pred             EEEEECCEEEE
Q ss_conf             99982995889
Q 029703          156 IQIWKDGEMKS  166 (189)
Q Consensus       156 ~~~~~~G~~~~  166 (189)
                      +.  .+|+.++
T Consensus        74 IF--i~g~~IG   82 (109)
T d1wika_          74 LY--VRGDLVG   82 (109)
T ss_dssp             EE--CSSSEEE
T ss_pred             EE--ECCEEEC
T ss_conf             88--9998986

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.44  E-value=0.0071  Score=30.78  Aligned_cols=31  Identities=3%  Similarity=-0.114  Sum_probs=23.0

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCE---EEEECCC
Q ss_conf             334688512479850010015743---8970898
Q 029703           21 KQQFQQPWSSGSSSCLLLQKNSAF---FWVDTAS   51 (189)
Q Consensus        21 ~~~~~~~~~i~g~Ptl~~~~~~~~---~~~~~~~   51 (189)
                      ....|+.|+|.+|||+.+|++|..   ..|.|.+
T Consensus        74 ~~~~~~~~~v~~~Ptl~~f~~g~~~~~~~y~G~~  107 (140)
T d2b5ea1          74 TENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSR  107 (140)
T ss_dssp             GGCCCSSCCCSSSSEEEEECCTTSCCCCBCCSCC
T ss_pred             CCHHCCCCCCCCCCEEEEEECCEECCEEEECCCC
T ss_conf             3011012345668859999899796206847989

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.88  E-value=0.12  Score=24.55  Aligned_cols=86  Identities=17%  Similarity=0.198  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECC
Q ss_conf             65799999996308994999995699954432109999999982797099999855871889986899978769998299
Q 029703           83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG  162 (189)
Q Consensus        83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G  162 (189)
                      .++++..+.   .=.+++.+..+...|..|..+...+++++.. .+++.+..-+.           .....|++.+..+|
T Consensus         7 k~QLk~~f~---~l~~~V~l~~~~~~~~~s~el~~~l~eva~l-SdkI~~~~~~~-----------~~~r~Ps~~i~~~g   71 (102)
T d1hyua3           7 KTQLRAYLE---KLTKPVELIATLDDSAKSAEIKELLAEIAEL-SDKVTFKEDNT-----------LPVRKPSFLITNPG   71 (102)
T ss_dssp             HHHHHHHHT---TCCSCEEEEEECCSSHHHHHHHHHHHHHHTT-CTTEEEEECTT-----------SSSCSSEEEEECTT
T ss_pred             HHHHHHHHH---HCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-CCCEEEEECCC-----------CCCCCCEEEEECCC
T ss_conf             999999999---5799889999958976589999999999851-88769997378-----------87779759994599


Q ss_pred             EEE-EEEECCCCCHHHHHHHHHHHHH
Q ss_conf             588-9984887500169999999984
Q 029703          163 EMK-SEVIGGHKAWLVIEEVREMIKK  187 (189)
Q Consensus       163 ~~~-~~~~g~~~~~~~~~~l~~~i~~  187 (189)
                      +.. -+|.|....    .++..+|..
T Consensus        72 ~~~gI~F~GiP~G----hEF~Slila   93 (102)
T d1hyua3          72 SQQGPRFAGSPLG----HEFTSLVLA   93 (102)
T ss_dssp             CCCSCEEESCCCG----GGHHHHHHH
T ss_pred             CEEEEEEECCCCC----CCHHHHHHH
T ss_conf             8710389607885----108899999

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.023  Score=28.25  Aligned_cols=33  Identities=6%  Similarity=0.099  Sum_probs=26.1

Q ss_pred             HCCCCCCCCCCCCCCCCCCCCEECCCEEEEECC
Q ss_conf             114334688512479850010015743897089
Q 029703           18 REGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTA   50 (189)
Q Consensus        18 ~~~~~~~~~~~~i~g~Ptl~~~~~~~~~~~~~~   50 (189)
                      .+....+++.|+|+|+||+.+|++|.....+.+
T Consensus        62 vd~~~~la~~~~I~~~PT~~~f~~g~~i~~~~g   94 (137)
T d1qgva_          62 ITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLG   94 (137)
T ss_dssp             TTTCCTTTTSSCSCSSCEEEEEETTEEEEEECC
T ss_pred             CCCCCHHHHHCCEEEEEEEEEEECCCEEEEEEC
T ss_conf             333510043457425789999968958999834

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.34  E-value=0.02  Score=28.52  Aligned_cols=30  Identities=13%  Similarity=0.169  Sum_probs=21.6

Q ss_pred             CCCC--CCCCCCCCCCCEECCCE---EEEECCCCC
Q ss_conf             6885--12479850010015743---897089864
Q 029703           24 FQQP--WSSGSSSCLLLQKNSAF---FWVDTASRS   53 (189)
Q Consensus        24 ~~~~--~~i~g~Ptl~~~~~~~~---~~~~~~~~~   53 (189)
                      +|+.  ++|.||||+.+|++|..   ..|.|.+..
T Consensus        72 l~~~~~~~I~~yPTi~~f~~G~~~~~~~y~G~rt~  106 (122)
T d1g7ea_          72 LSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKV  106 (122)
T ss_dssp             HHHHHTCSSSSCEEEEEEESSCCCCCEEEESCCCH
T ss_pred             HHHHHCCCCCCCCEEEEEECCCCCCCEECCCCCCH
T ss_conf             88864235567986899745765676651798999

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=92.98  E-value=0.011  Score=29.92  Aligned_cols=30  Identities=17%  Similarity=0.050  Sum_probs=22.6

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCE-EEEECC
Q ss_conf             334688512479850010015743-897089
Q 029703           21 KQQFQQPWSSGSSSCLLLQKNSAF-FWVDTA   50 (189)
Q Consensus        21 ~~~~~~~~~i~g~Ptl~~~~~~~~-~~~~~~   50 (189)
                      -..+|+.|+|+|+||+.++++|.. ..+.|.
T Consensus        60 ~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~   90 (104)
T d1fb6a_          60 APGIATQYNIRSIPTVLFFKNGERKESIIGA   90 (104)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETTEEEEEEEEC
T ss_pred             CHHHHHHCCEEEEEEEEEEECCEEEEEEECC
T ss_conf             5545541465254578999757489998679

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=92.69  E-value=0.014  Score=29.37  Aligned_cols=30  Identities=10%  Similarity=0.008  Sum_probs=22.7

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCE-EEEECC
Q ss_conf             334688512479850010015743-897089
Q 029703           21 KQQFQQPWSSGSSSCLLLQKNSAF-FWVDTA   50 (189)
Q Consensus        21 ~~~~~~~~~i~g~Ptl~~~~~~~~-~~~~~~   50 (189)
                      ...+|+.|+|+|+||+.++++|.. ..+.|.
T Consensus        62 ~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~   92 (107)
T d1dbya_          62 SPNVASEYGIRSIPTIMVFKGGKKCETIIGA   92 (107)
T ss_dssp             CHHHHHHHTCCSSCEEEEESSSSEEEEEESC
T ss_pred             CHHHHHHHCCCCEEEEEEEECCEEEEEEECC
T ss_conf             5667988134626799999878088898679

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.016  Score=28.99  Aligned_cols=42  Identities=12%  Similarity=0.102  Sum_probs=27.1

Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCE---EEEECC
Q ss_conf             1358899773114334688512479850010015743---897089
Q 029703            8 SSILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAF---FWVDTA   50 (189)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~i~g~Ptl~~~~~~~~---~~~~~~   50 (189)
                      ..+.+..+++.+. ..+|..|+|.||||+.++++|..   ..|.|.
T Consensus        58 ~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~G~~~~~~~~~g~  102 (120)
T d1meka_          58 SEIRLAKVDATEE-SDLAQQYGVRGYPTIKFFRNGDTASPKEYTAG  102 (120)
T ss_dssp             CCCBCEEEETTTC-CSSHHHHTCCSSSEEEEEESSCSSSCEECCCC
T ss_pred             CCEEEECCCCCCC-HHHHHHHCCCCCCEEEEEECCEEEEEEEECCC
T ss_conf             4203410346524-15799809846875999989969500796178

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=92.33  E-value=0.23  Score=23.23  Aligned_cols=86  Identities=14%  Similarity=0.242  Sum_probs=58.1

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHH-CC-CEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEECCCC
Q ss_conf             8994999995699954432109999999982-79-709999985587188998689997876999829958899848875
Q 029703           96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DT-KLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHK  173 (189)
Q Consensus        96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~-~~-~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~  173 (189)
                      ..++..+..|...-+.+......+..+-+++ .+ .+.+-.||+.++++ ++..++|..+||++=.... ...++.|..-
T Consensus         9 ~~~~l~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPe-laE~~~IvATPtLIK~~P~-P~q~l~Gs~i   86 (105)
T d1t4za_           9 LAQPLLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQ-LVEYYRLVVTPALVKIGPG-SRQVLSGIDL   86 (105)
T ss_dssp             CCCCEEEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHH-HHHHTTCCSSSEEEEEESS-CCEEEESSCH
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHH-HHHHCCEEECCHHHHCCCC-CCEEECCHHH
T ss_conf             5777599999869964599999999999983589956899962333975-7755887761475524899-6424157058


Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             00169999999984
Q 029703          174 AWLVIEEVREMIKK  187 (189)
Q Consensus       174 ~~~~~~~l~~~i~~  187 (189)
                      .    .++..|.-+
T Consensus        87 ~----~ql~~w~pr   96 (105)
T d1t4za_          87 T----DQLANQLPQ   96 (105)
T ss_dssp             H----HHHHHHHHH
T ss_pred             H----HHHHHHHHH
T ss_conf             7----777655167

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=91.68  E-value=0.029  Score=27.75  Aligned_cols=30  Identities=20%  Similarity=0.051  Sum_probs=22.8

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCE-EEEECC
Q ss_conf             334688512479850010015743-897089
Q 029703           21 KQQFQQPWSSGSSSCLLLQKNSAF-FWVDTA   50 (189)
Q Consensus        21 ~~~~~~~~~i~g~Ptl~~~~~~~~-~~~~~~   50 (189)
                      -..+|..|+|.|+||+.++++|.. ..+.|.
T Consensus        63 ~~~l~~~~~v~~~PT~~~~~~G~~v~~~~G~   93 (108)
T d2trxa_          63 NPGTAPKYGIRGIPTLLLFKNGEVAATKVGA   93 (108)
T ss_dssp             CTTHHHHTTCCSSSEEEEEETTEEEEEEESC
T ss_pred             HHHHHHHHCCCCEEEEEEEECCEEEEEEECC
T ss_conf             1547988388717799998899797898689

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.48  E-value=0.017  Score=28.90  Aligned_cols=34  Identities=21%  Similarity=0.165  Sum_probs=23.7

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCE
Q ss_conf             58899773114334688512479850010015743
Q 029703           10 ILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAF   44 (189)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~i~g~Ptl~~~~~~~~   44 (189)
                      +.+..+++.+. +.+|..|+|.+|||+.++++|..
T Consensus        61 v~~~~vd~~~~-~~l~~~~~v~~~Pti~~f~~g~~   94 (119)
T d2b5ea4          61 ITLAQIDCTEN-QDLCMEHNIPGFPSLKIFKNSDV   94 (119)
T ss_dssp             CEEEEEETTTC-HHHHHHTTCCSSSEEEEEETTCT
T ss_pred             EEEEEEECCCH-HHHHHHHCCCCCCEEEEEECCEE
T ss_conf             04665302244-88888753456986999999988

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=91.44  E-value=0.031  Score=27.58  Aligned_cols=22  Identities=14%  Similarity=-0.023  Sum_probs=17.8

Q ss_pred             CCCCCCCCCCCCCCCCCEECCC
Q ss_conf             3468851247985001001574
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSA   43 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~   43 (189)
                      ...|..|+|+||||+.+|++|.
T Consensus        66 ~~~~~~~~v~~~Pti~~f~~g~   87 (116)
T d2djja1          66 TANDVPDEIQGFPTIKLYPAGA   87 (116)
T ss_dssp             TTSCCSSCCSSSSEEEEECSSC
T ss_pred             CHHHHCCCCCCCCEEEEEECCC
T ss_conf             3133113346898799998993

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=91.07  E-value=0.029  Score=27.74  Aligned_cols=29  Identities=10%  Similarity=0.106  Sum_probs=21.8

Q ss_pred             CCCCCCCCCCCCCCCCCEECCCEE-EEECC
Q ss_conf             346885124798500100157438-97089
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAFF-WVDTA   50 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~~-~~~~~   50 (189)
                      ..+|+.|+|+++||+.++++|... .+.|.
T Consensus        64 ~~l~~~~~I~~~Pt~~~~~~g~~v~~~~G~   93 (108)
T d1thxa_          64 PTTVKKYKVEGVPALRLVKGEQILDSTEGV   93 (108)
T ss_dssp             HHHHHHTTCCSSSEEEEEETTEEEEEEESC
T ss_pred             HHHHHHHCCCCCCEEEEEECCEEEEEEECC
T ss_conf             889998502689879999999998999688

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=90.83  E-value=0.023  Score=28.23  Aligned_cols=27  Identities=7%  Similarity=0.236  Sum_probs=21.4

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCEEEE
Q ss_conf             334688512479850010015743897
Q 029703           21 KQQFQQPWSSGSSSCLLLQKNSAFFWV   47 (189)
Q Consensus        21 ~~~~~~~~~i~g~Ptl~~~~~~~~~~~   47 (189)
                      -..++..|+|+++||+.++++|.....
T Consensus        68 ~~~l~~~~~I~~~Pt~~~~k~G~~v~~   94 (113)
T d1ti3a_          68 LKAVAEEWNVEAMPTFIFLKDGKLVDK   94 (113)
T ss_dssp             CHHHHHHHHCSSTTEEEEEETTEEEEE
T ss_pred             CCCCCCCCEECCCCEEEEEECCEEEEE
T ss_conf             565322672324365999999999999

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=90.54  E-value=0.031  Score=27.55  Aligned_cols=29  Identities=14%  Similarity=-0.050  Sum_probs=22.4

Q ss_pred             CCCCCCCCCCCCCCCCCEECCCE-EEEECC
Q ss_conf             34688512479850010015743-897089
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDTA   50 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~~~   50 (189)
                      ..+|..|+|.|+||+.++++|.. ..+.|.
T Consensus        61 ~~~~~~~~V~~~Pt~~~~~~G~~~~~~~G~   90 (105)
T d1nw2a_          61 PETTSQFGIMSIPTLILFKGGEPVKQLIGY   90 (105)
T ss_dssp             HHHHHHTTCCBSSEEEEEETTEEEEEEESC
T ss_pred             CCCHHHCCCCEEEEEEEEECCEEEEEEECC
T ss_conf             154888796431079999899898899788

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.50  E-value=0.035  Score=27.29  Aligned_cols=24  Identities=4%  Similarity=0.043  Sum_probs=19.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf             143346885124798500100157
Q 029703           19 EGKQQFQQPWSSGSSSCLLLQKNS   42 (189)
Q Consensus        19 ~~~~~~~~~~~i~g~Ptl~~~~~~   42 (189)
                      +....+++.|+|+|+||+.++++|
T Consensus        43 d~~~~la~~~~V~~~Pt~~i~~~g   66 (85)
T d1fo5a_          43 MENPQKAMEYGIMAVPTIVINGDV   66 (85)
T ss_dssp             SSSCCTTTSTTTCCSSEEEETTEE
T ss_pred             CCCCCCCCCCCCEEEEEEEEECCC
T ss_conf             001133336871485099997791

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.13  E-value=0.033  Score=27.44  Aligned_cols=28  Identities=11%  Similarity=-0.093  Sum_probs=21.8

Q ss_pred             CCCCCCCCCCCCCCCCCEECCCE-EEEEC
Q ss_conf             34688512479850010015743-89708
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDT   49 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~~   49 (189)
                      ..++..|+|.++||+.++++|.. ..+.|
T Consensus        61 ~~~~~~~~V~~~Pt~i~~k~G~~v~~~~G   89 (103)
T d1syra_          61 SEVTEKENITSMPTFKVYKNGSSVDTLLG   89 (103)
T ss_dssp             HHHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CCEEEEEEEECCEEEEEEECCEEEEEEEC
T ss_conf             53000223505608999999999999949

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=89.95  E-value=0.034  Score=27.39  Aligned_cols=29  Identities=7%  Similarity=0.003  Sum_probs=21.7

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCE-EEEEC
Q ss_conf             334688512479850010015743-89708
Q 029703           21 KQQFQQPWSSGSSSCLLLQKNSAF-FWVDT   49 (189)
Q Consensus        21 ~~~~~~~~~i~g~Ptl~~~~~~~~-~~~~~   49 (189)
                      -..+|+.|+|+++||+.++++|.. ..+.|
T Consensus        68 ~~~l~~~~~V~~~Pt~~~~k~G~~v~~~~G   97 (112)
T d1f9ma_          68 NKTLAKELGIRVVPTFKILKENSVVGEVTG   97 (112)
T ss_dssp             THHHHHHHCCSSSSEEEEEETTEEEEEEES
T ss_pred             CHHHHHHEEECCCCEEEEEECCEEEEEEEC
T ss_conf             465675434056878999999999999948

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.72  E-value=0.045  Score=26.74  Aligned_cols=29  Identities=10%  Similarity=0.138  Sum_probs=21.3

Q ss_pred             CCCCCCCCCCCCCCCCCEECCCE-EEEECC
Q ss_conf             34688512479850010015743-897089
Q 029703           22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDTA   50 (189)
Q Consensus        22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~~~   50 (189)
                      +.++..|+|.|+||+.++++|.. ..+.|.
T Consensus        63 ~~l~~~~~V~~vPTi~i~~~G~~~~~~~G~   92 (107)
T d1a8la2          63 PEWADQYNVMAVPKIVIQVNGEDRVEFEGA   92 (107)
T ss_dssp             HHHHHHTTCCSSCEEEEEETTEEEEEEESC
T ss_pred             CCCCCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf             122112454100089999699398899789

>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Circadian oscillation regulator KaiB
species: Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]

Probab=80.95  E-value=0.3  Score=22.65  Aligned_cols=57  Identities=18%  Similarity=0.213  Sum_probs=44.7

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCHHHHHHHCCCCCCCEEE
Q ss_conf             999995699954432109999999982-7970999998558718899868999787699
Q 029703          100 ILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ  157 (189)
Q Consensus       100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~  157 (189)
                      ++-.|-+..-+.+......+.++-+++ .+...+-.||+.++++ ++..++|..+||++
T Consensus         3 ~L~LyVaG~tp~S~~ai~nl~~i~e~~l~~~y~LeVIDv~~qP~-lAe~~~IvATPtLv   60 (90)
T d1r5pa_           3 VLKLYVAGNTPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQ-LAEEDKILATPTLS   60 (90)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTSCS-CCTTCCEECHHHHG
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH-HHHHCCEEEEHHHH
T ss_conf             99999828984489999999999998669967999987224974-78568888625777

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.52  E-value=1.3  Score=19.43  Aligned_cols=74  Identities=12%  Similarity=0.075  Sum_probs=44.3

Q ss_pred             CCCCEEEEEE-CCCCHHH-HHHHHHHHHHHHHHC--CCEEEEEEECCCCH----------------------HHHHHHCC
Q ss_conf             8994999995-6999544-321099999999827--97099999855871----------------------88998689
Q 029703           96 LSQPILIDWM-ASWCRKC-IYLKPKLEKLAAEFD--TKLKFYYVDVNKVS----------------------KDLVKRGN  149 (189)
Q Consensus        96 ~~k~~vv~f~-a~wC~~C-~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~----------------------~~l~~~~~  149 (189)
                      .+|.++++|| ..|++.| ....+.+.+....+.  +...++-+..+...                      ..+++.|+
T Consensus        30 ~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~~~~~~~~~~~~~~~~~llsD~~~~~a~~~g  109 (161)
T d1hd2a_          30 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETD  109 (161)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHT
T ss_pred             CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             99869999986665521122220277763478998598599998048246543333201232224334688644433200


Q ss_pred             CC-------------CCCEEEEEECCEEEEEEE
Q ss_conf             99-------------787699982995889984
Q 029703          150 IS-------------KMPTIQIWKDGEMKSEVI  169 (189)
Q Consensus       150 i~-------------~~Pt~~~~~~G~~~~~~~  169 (189)
                      +.             .-=++++..+|.+...+.
T Consensus       110 ~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~v  142 (161)
T d1hd2a_         110 LLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNV  142 (161)
T ss_dssp             CBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEE
T ss_pred             EEECCCCCCCCCCCEEEEEEEEECCCEEEEEEE
T ss_conf             013356676321157749999978998999999