Citrus Sinensis ID: 029714

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
ccccccccccccccEEEcccEEEEEcEEEEcccEEEEEccEEEEEccccccccEEEccccccccccEEEEEEccEEccccccccccccccEEEccccccccEEEEEccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHcccccccEEccccccccccccccccc
EEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccc
MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQncdiharkpnsgqknmvtaqgradpnqntgiviqksrigatsdlkpvqgsfptylgrpwkeysRTVIMQssitdvihpagwhewdgnfalntlfygehqnagagagtsgrvkwKGFRVITsateaqaftpgsfiagsswlgstgfpfslgl
MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVtaqgradpnqnTGIVIQKsrigatsdlkpvqgsfptylgrpwKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
***YQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIH*************************IVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFP*****
MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFS***
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query189 2.2.26 [Sep-21-2011]
P83948584 Pectinesterase 3 OS=Citru yes no 1.0 0.323 1.0 1e-112
O04886584 Pectinesterase 1 OS=Citru yes no 1.0 0.323 0.984 1e-111
Q43143583 Pectinesterase/pectineste N/A no 1.0 0.324 0.867 1e-98
P83218319 Pectinesterase OS=Daucus N/A no 1.0 0.592 0.846 2e-95
O49006592 Pectinesterase/pectineste yes no 1.0 0.319 0.809 3e-91
Q42534587 Pectinesterase 2 OS=Arabi no no 1.0 0.321 0.783 3e-87
O22149511 Probable pectinesterase/p no no 0.978 0.362 0.668 2e-70
P83947545 Pectinesterase/pectineste N/A no 0.989 0.343 0.625 2e-66
O04887510 Pectinesterase 2 OS=Citru no no 0.978 0.362 0.612 5e-66
Q1JPL7557 Pectinesterase/pectineste no no 0.968 0.328 0.639 2e-65
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function desciption
 Score =  404 bits (1039), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR 60
           MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR
Sbjct: 396 MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR 455

Query: 61  ADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWH 120
           ADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWH
Sbjct: 456 ADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWH 515

Query: 121 EWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS 180
           EWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS
Sbjct: 516 EWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS 575

Query: 181 TGFPFSLGL 189
           TGFPFSLGL
Sbjct: 576 TGFPFSLGL 584
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Citrus sinensis (taxid: 2711)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|Q43143|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 Back     alignment and function description
>sp|P83218|PME_DAUCA Pectinesterase OS=Daucus carota PE=1 SV=1 Back     alignment and function description
>sp|O49006|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2 Back     alignment and function description
>sp|Q42534|PME2_ARATH Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2 Back     alignment and function description
>sp|O22149|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2 Back     alignment and function description
>sp|P83947|PME1_FICPW Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|Q1JPL7|PME18_ARATH Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
57014097 584 RecName: Full=Pectinesterase 3; Short=PE 1.0 0.323 1.0 1e-111
6174912 584 RecName: Full=Pectinesterase 1; Short=PE 1.0 0.323 0.984 1e-109
2098711 584 pectinesterase [Citrus sinensis] 1.0 0.323 0.984 1e-109
91981275229 pectin methylesterase, partial [Citrus b 1.0 0.825 0.984 1e-106
8671350 579 pectin methylesterase [Nicotiana tabacum 1.0 0.326 0.894 1e-100
29602797 579 pectin methyl-esterase [Nicotiana bentha 1.0 0.326 0.883 1e-98
6689892 576 pectin methyl esterase [Solanum tuberosu 1.0 0.328 0.878 1e-98
224074109 579 predicted protein [Populus trichocarpa] 1.0 0.326 0.873 7e-98
9716271 579 putative pectin methylesterase [Populus 1.0 0.326 0.867 1e-97
224138512 579 predicted protein [Populus trichocarpa] 1.0 0.326 0.867 2e-97
>gi|57014097|sp|P83948.1|PME3_CITSI RecName: Full=Pectinesterase 3; Short=PE 3; AltName: Full=Pectin methylesterase 3; Flags: Precursor Back     alignment and taxonomy information
 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR 60
           MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR
Sbjct: 396 MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR 455

Query: 61  ADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWH 120
           ADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWH
Sbjct: 456 ADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWH 515

Query: 121 EWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS 180
           EWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS
Sbjct: 516 EWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS 575

Query: 181 TGFPFSLGL 189
           TGFPFSLGL
Sbjct: 576 TGFPFSLGL 584

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|6174912|sp|O04886.1|PME1_CITSI RecName: Full=Pectinesterase 1; Short=PE 1; AltName: Full=Pectin methylesterase; Flags: Precursor gi|2098705|gb|AAB57667.1| pectinesterase [Citrus sinensis] Back     alignment and taxonomy information
>gi|2098711|gb|AAB57670.1| pectinesterase [Citrus sinensis] Back     alignment and taxonomy information
>gi|91981275|gb|ABE67980.1| pectin methylesterase, partial [Citrus bergamia] Back     alignment and taxonomy information
>gi|8671350|emb|CAB95025.1| pectin methylesterase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|29602797|gb|AAO85706.1| pectin methyl-esterase [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|6689892|gb|AAF23892.1|AF152172_1 pectin methyl esterase [Solanum tuberosum] Back     alignment and taxonomy information
>gi|224074109|ref|XP_002304257.1| predicted protein [Populus trichocarpa] gi|222841689|gb|EEE79236.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|9716271|emb|CAC01624.1| putative pectin methylesterase [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|224138512|ref|XP_002326621.1| predicted protein [Populus trichocarpa] gi|222833943|gb|EEE72420.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 1.0 0.319 0.809 1.3e-82
TAIR|locus:2197056587 PME2 "pectin methylesterase 2" 1.0 0.321 0.783 2.6e-79
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.978 0.362 0.668 1.2e-65
TAIR|locus:2200076557 PMEPCRA "methylesterase PCR A" 0.968 0.328 0.639 1.7e-59
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 1.0 0.321 0.608 2.7e-59
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 1.0 0.316 0.624 3.5e-59
TAIR|locus:2099565594 AT3G47400 [Arabidopsis thalian 0.984 0.313 0.606 3.2e-58
TAIR|locus:2101836519 AT3G60730 [Arabidopsis thalian 0.984 0.358 0.575 4.6e-57
TAIR|locus:2153112536 AT5G51490 [Arabidopsis thalian 0.984 0.347 0.585 2.5e-56
TAIR|locus:2062013560 AT2G47550 [Arabidopsis thalian 0.984 0.332 0.561 4.8e-55
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 153/189 (80%), Positives = 166/189 (87%)

Query:     1 MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR 60
             MLAYQDTLYVHSNRQFFV CLIAGTVDFIFGNAA VLQ+CDIHAR+PNSGQKNMVTAQGR
Sbjct:   404 MLAYQDTLYVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDIHARRPNSGQKNMVTAQGR 463

Query:    61 ADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWH 120
              DPNQNTGIVIQK RIGATSDL+ V+GSFPTYLGRPWKEYS+TVIMQS+I+DVI P GW 
Sbjct:   464 TDPNQNTGIVIQKCRIGATSDLQSVKGSFPTYLGRPWKEYSQTVIMQSAISDVIRPEGWS 523

Query:   121 EWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS 180
             EW G FALNTL Y E+ N GAGAGT+ RVKW+GF+VIT+A EAQ +T G FI G  WL S
Sbjct:   524 EWTGTFALNTLTYREYSNTGAGAGTANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSS 583

Query:   181 TGFPFSLGL 189
             TGFPFSLGL
Sbjct:   584 TGFPFSLGL 592
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005618 "cell wall" evidence=IEA;IDA
GO:0030599 "pectinesterase activity" evidence=IEA;ISS;IMP
GO:0042545 "cell wall modification" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009624 "response to nematode" evidence=IMP
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0006569 "tryptophan catabolic process" evidence=RCA
GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA
TAIR|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099565 AT3G47400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101836 AT3G60730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153112 AT5G51490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062013 AT2G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04886PME1_CITSI3, ., 1, ., 1, ., 1, 10.98411.00.3236yesno
P83948PME3_CITSI3, ., 1, ., 1, ., 1, 11.01.00.3236yesno
O49006PME3_ARATH3, ., 1, ., 1, ., 1, 10.80951.00.3192yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.946
3rd Layer3.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00030462
hypothetical protein (580 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_VIII1759
SubName- Full=Putative uncharacterized protein; (327 aa)
  •  •  0.930
estExt_fgenesh4_pm.C_LG_VI0607
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.928
fgenesh4_pg.C_LG_XVI000684
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.927
gw1.X.2863.1
hypothetical protein (378 aa)
  •  •  0.927
eugene3.00081702
SubName- Full=Putative uncharacterized protein; (402 aa)
  •  •  0.926
gw1.II.376.1
hypothetical protein (392 aa)
  •  •  0.923
estExt_fgenesh4_pg.C_LG_I2215
hypothetical protein (403 aa)
  •  •  0.921
gw1.28.798.1
hypothetical protein (346 aa)
  •  •  0.921
eugene3.00150667
SubName- Full=Putative uncharacterized protein; (404 aa)
  •  •  0.921
gw1.XI.2918.1
hypothetical protein (368 aa)
  •  •  0.920

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-125
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-117
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-108
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 3e-95
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 2e-88
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 7e-87
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 4e-84
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 4e-83
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 3e-82
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 3e-82
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 5e-81
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 6e-79
PLN02314586 PLN02314, PLN02314, pectinesterase 2e-76
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 2e-76
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 6e-75
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 6e-75
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 4e-71
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 3e-70
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 2e-69
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-63
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 5e-58
PLN02197588 PLN02197, PLN02197, pectinesterase 7e-49
PLN02432293 PLN02432, PLN02432, putative pectinesterase 6e-39
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 5e-35
PLN02497331 PLN02497, PLN02497, probable pectinesterase 9e-35
PLN02671359 PLN02671, PLN02671, pectinesterase 1e-34
PLN02304379 PLN02304, PLN02304, probable pectinesterase 3e-31
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 1e-30
PLN02773317 PLN02773, PLN02773, pectinesterase 2e-30
PLN02176340 PLN02176, PLN02176, putative pectinesterase 2e-24
PLN02634359 PLN02634, PLN02634, probable pectinesterase 6e-24
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 4e-21
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 5e-17
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 3e-09
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information 
 Score =  353 bits (908), Expect = e-125
 Identities = 125/175 (71%), Positives = 140/175 (80%)

Query: 1   MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR 60
              YQDTLYVHSNRQF+ +C I GTVDFIFGNAAAV QNC+I ARKP  GQKN VTAQGR
Sbjct: 124 FDGYQDTLYVHSNRQFYRDCDITGTVDFIFGNAAAVFQNCNIVARKPLPGQKNTVTAQGR 183

Query: 61  ADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWH 120
            DPNQNTGIVIQ  RI A  DL PV+G+F TYLGRPWKEYSRTVIMQS I DVI PAGW 
Sbjct: 184 TDPNQNTGIVIQNCRITADPDLLPVKGTFKTYLGRPWKEYSRTVIMQSYIDDVIDPAGWL 243

Query: 121 EWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGS 175
            W+G+FAL+TL+YGE+ N+G GAGTS RVKW G++VI S  EA  FT G+FI G+
Sbjct: 244 PWNGDFALDTLYYGEYNNSGPGAGTSKRVKWPGYKVILSDEEALKFTVGNFIGGN 298

Length = 298
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 189
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02432293 putative pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
PLN02773317 pectinesterase 96.5
PLN02480343 Probable pectinesterase 96.4
PRK10531422 acyl-CoA thioesterase; Provisional 96.3
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.71
PLN02176340 putative pectinesterase 95.68
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.67
PLN02634359 probable pectinesterase 95.65
PLN02671359 pectinesterase 95.59
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.54
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.46
PLN02432293 putative pectinesterase 95.41
PLN02665366 pectinesterase family protein 95.4
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.38
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.23
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.21
PLN02916502 pectinesterase family protein 95.2
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.11
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.11
PLN02682369 pectinesterase family protein 95.1
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.05
PLN02468565 putative pectinesterase/pectinesterase inhibitor 95.01
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.96
PLN02197588 pectinesterase 94.81
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.79
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 94.62
PLN02314586 pectinesterase 94.59
PLN02497331 probable pectinesterase 94.48
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.47
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.47
PLN02301548 pectinesterase/pectinesterase inhibitor 94.41
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.34
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.3
PLN02304379 probable pectinesterase 94.23
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.74
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=2.2e-68  Score=484.20  Aligned_cols=189  Identities=53%  Similarity=0.975  Sum_probs=177.9

Q ss_pred             CccccceeeecCCcEEeecCEEeeeceeEecCcceeeEecEEEEecCCCCCcceEEecCCCCCCCCeeEEEEccEEeecC
Q 029714            1 MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATS   80 (189)
Q Consensus         1 ~~g~QDTL~~~~gr~yf~~c~I~G~vDfIfG~g~a~fe~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~   80 (189)
                      |+|||||||++++||||++|+|+|+||||||+|+|+||+|+|+++++..++.++||||+|+++++++||||+||+|++++
T Consensus       321 f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~  400 (509)
T PLN02488        321 IEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS  400 (509)
T ss_pred             eeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence            68999999999999999999999999999999999999999999987777789999999999999999999999999988


Q ss_pred             CCCCCCCcccEEecCCCCCCCcEEEEcCcCCCcccCCCCCCCCCCCCCCccEEEEeecccCCCCCCCceeeccceeeCCH
Q 029714           81 DLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSA  160 (189)
Q Consensus        81 ~~~~~~~~~~~yLGRpW~~~s~vv~~~~~l~~~I~~~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~lt~  160 (189)
                      ++.+...+.++||||||++|||||||+|+|+++|+|+||.+|++..++++++|+||+|+||||++++||+|+++++++++
T Consensus       401 ~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~~I~P~GW~~W~~~~~~~t~~yaEY~n~GPGA~~s~RV~W~g~~~l~~~  480 (509)
T PLN02488        401 DLDPVKATVKTYLGRPWRKYSTVAVLQSFIGDLVDPAGWTPWEGETGLSTLYYGEYQNRGPGAVTSKRVKWTGFRVMTDP  480 (509)
T ss_pred             cccccccccceeecCCCCCCccEEEEeccCCCeecccccCccCCCCCCCceEEEEecccCCCCCcCCCcccccccccCCH
Confidence            76543334578999999999999999999999999999999999888899999999999999999999999998888789


Q ss_pred             HHHhcCCccccccCCCCCCCCCCCCCCCC
Q 029714          161 TEAQAFTPGSFIAGSSWLGSTGFPFSLGL  189 (189)
Q Consensus       161 ~eA~~yt~~~~~~g~~W~p~~~~p~~~~~  189 (189)
                      +||++|++.+||+|++|+|.++|||.+||
T Consensus       481 ~eA~~ft~~~fi~G~~Wl~~tgvp~~~gl  509 (509)
T PLN02488        481 KEATKFTVAKLLDGESWLKASGVPYEKGL  509 (509)
T ss_pred             HHHHhhhHHheeCCCCcCCCCCCCcCCCC
Confidence            99999999999999999999999999997

>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 2e-96
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-65
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 2e-16
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 3e-16
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 3e-15
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 4e-07
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  347 bits (891), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 160/189 (84%), Positives = 175/189 (92%)
Query: 1   MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR 60
           +LAYQD+LYVHSNRQFF+NC IAGTVDFIFGNAA VLQ+CDIHAR+P SGQKNMVTAQGR
Sbjct: 131 ILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGR 190
Query: 61  ADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWH 120
            DPNQNTGIVIQKSRIGATSDL+PVQ SFPTYLGRPWKEYSRTV+MQSSIT+VI+PAGW 
Sbjct: 191 TDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWF 250
Query: 121 EWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS 180
            WDGNFAL+TL+YGE+QN GAGA TSGRV WKGF+VITS+TEAQ FTPGSFIAG SWL +
Sbjct: 251 PWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKA 310
Query: 181 TGFPFSLGL 189
           T FPFSLGL
Sbjct: 311 TTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-106
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-105
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 5e-73
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 9e-66
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-53
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  306 bits (785), Expect = e-106
 Identities = 160/189 (84%), Positives = 175/189 (92%)

Query: 1   MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR 60
           +LAYQD+LYVHSNRQFF+NC IAGTVDFIFGNAA VLQ+CDIHAR+P SGQKNMVTAQGR
Sbjct: 131 ILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGR 190

Query: 61  ADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWH 120
            DPNQNTGIVIQKSRIGATSDL+PVQ SFPTYLGRPWKEYSRTV+MQSSIT+VI+PAGW 
Sbjct: 191 TDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWF 250

Query: 121 EWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS 180
            WDGNFAL+TL+YGE+QN GAGA TSGRV WKGF+VITS+TEAQ FTPGSFIAG SWL +
Sbjct: 251 PWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKA 310

Query: 181 TGFPFSLGL 189
           T FPFSLGL
Sbjct: 311 TTFPFSLGL 319
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.99
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.98
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.88
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.3
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.1
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 92.76
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=4.3e-66  Score=449.43  Aligned_cols=189  Identities=62%  Similarity=1.047  Sum_probs=176.4

Q ss_pred             CccccceeeecCCcEEeecCEEeeeceeEecCcceeeEecEEEEecCCCCCcceEEecCCCCCCCCeeEEEEccEEeecC
Q 029714            1 MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATS   80 (189)
Q Consensus         1 ~~g~QDTL~~~~gr~yf~~c~I~G~vDfIfG~g~a~fe~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~   80 (189)
                      |+|+|||||++++||||++|+|+|+||||||+|+|+||+|+|+++++..++.++||||+|+++++++||||+||+|++++
T Consensus       127 f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~  206 (317)
T 1xg2_A          127 IDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASS  206 (317)
T ss_dssp             EECSTTCEEECSSEEEEESCEEEESSSCEEECCEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECT
T ss_pred             eCccccceeecCccEEEEeeEEEeceeEEcCCceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCC
Confidence            68999999999999999999999999999999999999999999887666789999999999999999999999999988


Q ss_pred             CCCCCCCcccEEecCCCCCCCcEEEEcCcCCCcccCCCCCCCCCCCCCCccEEEEeecccCCCCCCCceeeccceeeCCH
Q 029714           81 DLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSA  160 (189)
Q Consensus        81 ~~~~~~~~~~~yLGRpW~~~s~vv~~~~~l~~~I~~~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~lt~  160 (189)
                      ++.+...+.++||||||++++++||++|+|+++|+|+||.+|++..++++++|+||+|+|||+++++||+|+++++++++
T Consensus       207 ~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~  286 (317)
T 1xg2_A          207 DLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDP  286 (317)
T ss_dssp             TTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCH
T ss_pred             CccccccceeEEeecccCCCceEEEEecccCCcccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCH
Confidence            65432223589999999999999999999999999999999998888899999999999999999999999998877788


Q ss_pred             HHHhcCCccccccCCCCCCCCCCCCCCCC
Q 029714          161 TEAQAFTPGSFIAGSSWLGSTGFPFSLGL  189 (189)
Q Consensus       161 ~eA~~yt~~~~~~g~~W~p~~~~p~~~~~  189 (189)
                      +||++|++.+||+|++|+|.+++||.+||
T Consensus       287 ~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  315 (317)
T 1xg2_A          287 AKAMPFTVAKLIQGGSWLRSTGVAYVDGL  315 (317)
T ss_dssp             HHHGGGSHHHHSCTHHHHGGGCCCCCCSS
T ss_pred             HHHHHhhHHhhcCCCCCcCCCCccccccc
Confidence            99999999999999899999999999997
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 189
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 7e-92
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 3e-48
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  269 bits (688), Expect = 7e-92
 Identities = 160/189 (84%), Positives = 175/189 (92%)

Query: 1   MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR 60
           +LAYQD+LYVHSNRQFF+NC IAGTVDFIFGNAA VLQ+CDIHAR+P SGQKNMVTAQGR
Sbjct: 131 ILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGR 190

Query: 61  ADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWH 120
            DPNQNTGIVIQKSRIGATSDL+PVQ SFPTYLGRPWKEYSRTV+MQSSIT+VI+PAGW 
Sbjct: 191 TDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWF 250

Query: 121 EWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS 180
            WDGNFAL+TL+YGE+QN GAGA TSGRV WKGF+VITS+TEAQ FTPGSFIAG SWL +
Sbjct: 251 PWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKA 310

Query: 181 TGFPFSLGL 189
           T FPFSLGL
Sbjct: 311 TTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.39
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.18
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=4.4e-69  Score=466.09  Aligned_cols=189  Identities=85%  Similarity=1.387  Sum_probs=178.7

Q ss_pred             CccccceeeecCCcEEeecCEEeeeceeEecCcceeeEecEEEEecCCCCCcceEEecCCCCCCCCeeEEEEccEEeecC
Q 029714            1 MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATS   80 (189)
Q Consensus         1 ~~g~QDTL~~~~gr~yf~~c~I~G~vDfIfG~g~a~fe~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~   80 (189)
                      |+|+|||||+++|||||++|+|||+||||||+|+|+||+|+|+++++..+..++||||+|+++.+++||||++|+|++++
T Consensus       131 f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~  210 (319)
T d1gq8a_         131 ILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATS  210 (319)
T ss_dssp             EECSTTCEEECSSEEEEESCEEEESSSCEEESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECT
T ss_pred             ecccCCeeEECCCCEEEEeeEEEeeccEEecCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCC
Confidence            68999999999999999999999999999999999999999999887777789999999999999999999999999998


Q ss_pred             CCCCCCCcccEEecCCCCCCCcEEEEcCcCCCcccCCCCCCCCCCCCCCccEEEEeecccCCCCCCCceeeccceeeCCH
Q 029714           81 DLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSA  160 (189)
Q Consensus        81 ~~~~~~~~~~~yLGRpW~~~s~vv~~~~~l~~~I~~~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~lt~  160 (189)
                      +........++||||||+++++|||++|+|+++|+|+||.+|+...++++++|+||+|+|||+++++||+|++++++|++
T Consensus       211 ~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~  290 (319)
T d1gq8a_         211 DLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSS  290 (319)
T ss_dssp             TTGGGGGGSCEEEECCSSTTCEEEEESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCH
T ss_pred             CccccccccceeccCCCCCcceEEEEecccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCH
Confidence            76544335689999999999999999999999999999999998888899999999999999999999999998889999


Q ss_pred             HHHhcCCccccccCCCCCCCCCCCCCCCC
Q 029714          161 TEAQAFTPGSFIAGSSWLGSTGFPFSLGL  189 (189)
Q Consensus       161 ~eA~~yt~~~~~~g~~W~p~~~~p~~~~~  189 (189)
                      +||++|+.++||+|++|+|.+++||.+||
T Consensus       291 ~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         291 TEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             HHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             HHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            99999999999999889999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure