Citrus Sinensis ID: 029723

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MASHDHHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccccccccEEEEEccccccccccccccccccHHHHHHccccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccEEcccccEEEcccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHcccccHHHEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHcc
Coil and Loop (DISEMBL)
mashdhhthdhahhhhhdndhdhtheknhgdstatswvgsdgrvyhshdglaphshepiyspgyfsrrappilsrnfneraftvgiggpvgtGKTALMLALCKFLRDKYslaavtndiftkedgeflmrngalpeeriravetggcphaairedisinlgpleelsnlFKADLLLcesgggnlqtisfi
Flexible Loop (DISEMBL)
MASHDHHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTndiftkedgefLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCEsgggnlqtisfi
Low Complexity Region (SEG)
MAShdhhthdhahhhhhdndhdhthEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI
Disordered region (IsUnstruct)
**********************************************************IYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGN*******
Disordered Region (DISOPRED)
******H*********************************************PHSHEPIYSPG************NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI
Disordered Region (DISEMBL)
*********************************ATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI
Disordered Region (DISPRO)
************************************WVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASHDHHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q96WV0	286	Uncharacterized urease ac	yes	no	0.687	0.454	0.648	1e-39
A9GP90	302	Urease accessory protein	yes	no	0.640	0.400	0.680	4e-39
Q11VN1	244	Urease accessory protein	yes	no	0.650	0.504	0.637	2e-37
A7HHN3	236	Urease accessory protein	yes	no	0.645	0.516	0.655	1e-33
A4VQW0	204	Urease accessory protein	yes	no	0.566	0.524	0.638	7e-33
C1DMZ7	204	Urease accessory protein	yes	no	0.566	0.524	0.648	4e-32
A4XQ16	204	Urease accessory protein	yes	no	0.566	0.524	0.620	5e-32
Q8DMQ4	200	Urease accessory protein	yes	no	0.555	0.525	0.613	5e-32
B1M3X4	205	Urease accessory protein	yes	no	0.539	0.497	0.660	1e-31
Q826R7	227	Urease accessory protein	yes	no	0.560	0.466	0.607	2e-31

>sp|Q96WV0|UREG_SCHPO Uncharacterized urease accessory protein ureG-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCPB16A4.05c PE=3 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 103/131 (78%), Gaps = 1/131 (0%)

Query: 54  HSHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLA 112
           HSH+ + +PG Y  R  P    R+F+ RAFT+G+GGPVG+GKTAL+L LC+ L +KYS+ 
Sbjct: 58  HSHDAMETPGSYLKRELPQFNHRDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEKYSIG 117

Query: 113 AVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKAD 172
            VTNDIFT+ED EFL+RN ALPEERIRA+ETGGCPHAAIRED+S NL  LEEL + F  +
Sbjct: 118 VVTNDIFTREDQEFLIRNKALPEERIRAIETGGCPHAAIREDVSGNLVALEELQSEFNTE 177

Query: 173 LLLCESGGGNL 183
           LLL ESGG NL
Sbjct: 178 LLLVESGGDNL 188

Probably facilitates nickel incorporation.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A9GP90|UREG_SORC5 Urease accessory protein UreG OS=Sorangium cellulosum (strain So ce56) GN=ureG PE=3 SV=1

 Score =  160 bits (405), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/122 (68%), Positives = 94/122 (77%), Gaps = 1/122 (0%)

Query: 62  PGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTK 121
           PG FS R  P   R+F+ RAFTVGIGGPVG+GKTAL+LALC+ LRD+  L  VTNDIFT+
Sbjct: 80  PGLFSERDAP-KDRDFSARAFTVGIGGPVGSGKTALVLALCRALRDRMPLGVVTNDIFTQ 138

Query: 122 EDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGG 181
           ED EFL RN ALP ERIRAVETGGCPHAAIREDIS NL  L++L +     LL+ ESGG 
Sbjct: 139 EDAEFLHRNKALPPERIRAVETGGCPHAAIREDISHNLVALDDLMDHVAPALLIVESGGD 198

Query: 182 NL 183
           NL
Sbjct: 199 NL 200

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Sorangium cellulosum (strain So ce56) (taxid: 448385)

>sp|Q11VN1|UREG_CYTH3 Urease accessory protein UreG OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ureG PE=3 SV=1

 Score =  155 bits (392), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 92/124 (74%), Gaps = 1/124 (0%)

Query: 61  SPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFT 120
           SPG+F  R      RNF +RAFTVGIGGPVGTGKTA ++ +CK LRDK ++A VTNDIFT
Sbjct: 15  SPGHFHHRELIHEKRNFKKRAFTVGIGGPVGTGKTAWLMQICKALRDKMNIAVVTNDIFT 74

Query: 121 KEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESG 179
            ED EFL+RN AL ++RI  VETGGCPHAAIRED+S N+  LEEL   F   +LL  ESG
Sbjct: 75  SEDAEFLIRNEALSKDRIIGVETGGCPHAAIREDVSQNMYALEELMKRFPDVELLFVESG 134

Query: 180 GGNL 183
           G NL
Sbjct: 135 GDNL 138

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) (taxid: 269798)

>sp|A7HHN3|UREG_ANADF Urease accessory protein UreG OS=Anaeromyxobacter sp. (strain Fw109-5) GN=ureG PE=3 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 93/122 (76%)

Query: 62  PGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTK 121
           PG F  R  P    +   RAFTVG+GGPVG+GKTAL+LALC+ LRD  SL  VTNDIFT+
Sbjct: 16  PGSFHDRGAPHARGDLRRRAFTVGVGGPVGSGKTALVLALCRALRDSRSLGVVTNDIFTR 75

Query: 122 EDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGG 181
           ED EFL+RN ALP ERIRAVETGGCPHAAIRED++ NL  LEEL+   + ++L CESGG 
Sbjct: 76  EDAEFLVRNDALPAERIRAVETGGCPHAAIREDVTANLLALEELTEAHRPEILFCESGGD 135

Query: 182 NL 183
           NL
Sbjct: 136 NL 137

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Anaeromyxobacter sp. (strain Fw109-5) (taxid: 404589)

>sp|A4VQW0|UREG_PSEU5 Urease accessory protein UreG OS=Pseudomonas stutzeri (strain A1501) GN=ureG PE=3 SV=1

 Score =  140 bits (352), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 83/108 (76%), Gaps = 1/108 (0%)

Query: 77  FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136
            N +   VGIGGPVG+GKTAL LALC+ LRD+Y+LA VTNDI+T+ED +FL+RN AL  E
Sbjct: 1   MNTQPLRVGIGGPVGSGKTALTLALCQALRDRYNLAVVTNDIYTQEDAQFLVRNEALAPE 60

Query: 137 RIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGGNL 183
           RI  VETGGCPH AIRED SINL  +E+L+  F   DL++ ESGG NL
Sbjct: 61  RIIGVETGGCPHTAIREDASINLEAVEQLNRRFPGLDLIIVESGGDNL 108

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Pseudomonas stutzeri (strain A1501) (taxid: 379731)

>sp|C1DMZ7|UREG_AZOVD Urease accessory protein UreG OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ureG PE=3 SV=1

 Score =  137 bits (345), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 80/108 (74%), Gaps = 1/108 (0%)

Query: 77  FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136
            N +   VGIGGPVG+GKTAL LALC+ LR +Y LA VTNDI+T+ED EFL+RN AL  E
Sbjct: 1   MNSQPLRVGIGGPVGSGKTALTLALCRALRGRYELAVVTNDIYTQEDAEFLVRNEALAPE 60

Query: 137 RIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGGNL 183
           RI  VETGGCPH AIRED SINL  +E L+  F   DL+L ESGG NL
Sbjct: 61  RIIGVETGGCPHTAIREDASINLEAVERLNRRFPGLDLILVESGGDNL 108

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Azotobacter vinelandii (strain DJ / ATCC BAA-1303) (taxid: 322710)

>sp|A4XQ16|UREG_PSEMY Urease accessory protein UreG OS=Pseudomonas mendocina (strain ymp) GN=ureG PE=3 SV=1

 Score =  137 bits (344), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 83/108 (76%), Gaps = 1/108 (0%)

Query: 77  FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136
            N +   VGIGGPVG+GKTAL LALC+ LR++Y++A VTNDI+T+ED +FL+RN AL  E
Sbjct: 1   MNSQPLRVGIGGPVGSGKTALTLALCRALRERYNIAVVTNDIYTQEDAQFLVRNEALEPE 60

Query: 137 RIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGGNL 183
           RI  VETGGCPH AIRED SINL  +E+L+  F   DL++ ESGG NL
Sbjct: 61  RIIGVETGGCPHTAIREDASINLEAVEQLNRRFPGLDLIIVESGGDNL 108

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Pseudomonas mendocina (strain ymp) (taxid: 399739)

>sp|Q8DMQ4|UREG_THEEB Urease accessory protein UreG OS=Thermosynechococcus elongatus (strain BP-1) GN=ureG PE=3 SV=1

 Score =  137 bits (344), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 80/106 (75%), Gaps = 1/106 (0%)

Query: 79  ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
           E    VG+ GPVG+GKTAL+ ALCK LRD+Y LA VTNDI+T+ED +FL+R+ ALP ERI
Sbjct: 2   ETVLRVGVAGPVGSGKTALVDALCKALRDRYRLAVVTNDIYTQEDAQFLVRSQALPPERI 61

Query: 139 RAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGGNL 183
             VETGGCPH AIRED S+NL  +++L   F+  DL+  ESGG NL
Sbjct: 62  LGVETGGCPHTAIREDASLNLAAIQQLETAFRPLDLIFVESGGDNL 107

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|B1M3X4|UREG1_METRJ Urease accessory protein UreG 1 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=ureG1 PE=3 SV=1

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/103 (66%), Positives = 76/103 (73%), Gaps = 1/103 (0%)

Query: 82  FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV 141
             VGIGGPVG+GKTALM  LCK  RD+Y + A+TNDI+TKED   L   GALPEERI  V
Sbjct: 8   LRVGIGGPVGSGKTALMEQLCKRFRDRYEICAITNDIYTKEDARILTVAGALPEERILGV 67

Query: 142 ETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNL 183
           ETGGCPH AIRED SINL  + E+S  F K DL+L ESGG NL
Sbjct: 68  ETGGCPHTAIREDASINLAAVAEMSRRFPKLDLVLIESGGDNL 110

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) (taxid: 426355)

>sp|Q826R7|UREG_STRAW Urease accessory protein UreG OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) GN=ureG PE=3 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 80/107 (74%), Gaps = 1/107 (0%)

Query: 78  NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137
             RA  +G+GGPVG+GKTA + ALC+ LRD +SLA VTNDI+T+ED EFL+R   LP ER
Sbjct: 25  TRRALRIGLGGPVGSGKTATVAALCRALRDAFSLAVVTNDIYTREDAEFLLREAVLPPER 84

Query: 138 IRAVETGGCPHAAIREDISINLGPLEELSN-LFKADLLLCESGGGNL 183
           I AVETG CPH AIR+DIS NL  +E+L + +   DL+L ESGG NL
Sbjct: 85  ITAVETGACPHTAIRDDISANLEAVEDLEDEVGPLDLVLVESGGDNL 131

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Streptomyces avermitilis (taxid: 33903)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
222143562	279	urease accessory protein ureG [Morus alb	0.814	0.551	0.902	3e-78
297826907	278	predicted protein [Arabidopsis lyrata su	0.830	0.564	0.891	3e-78
79324312	276	urease accessory protein [Arabidopsis th	0.830	0.568	0.891	6e-78
15226754	275	urease accessory protein [Arabidopsis th	0.830	0.570	0.891	7e-78
255557339	275	Urease accessory protein ureG, putative	0.788	0.541	0.912	2e-77
13161906	278	urease accessory protein G [Solanum tube	0.804	0.546	0.894	2e-77
297740673	521	unnamed protein product [Vitis vinifera]	0.952	0.345	0.781	2e-77
13161904	272	urease accessory protein G [Solanum tube	0.804	0.558	0.888	4e-77
13161908	280	urease accessory protein G [Solanum tube	0.804	0.542	0.894	5e-77
13161912	284	urease accessory protein G [Solanum tube	0.804	0.535	0.888	5e-77

>gi|222143562|dbj|BAH19310.1| urease accessory protein ureG [Morus alba]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/154 (90%), Positives = 148/154 (96%)

Query: 30  GDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGP 89
           GDS   +WVG DGRVYHSHDGLAPHSHEPIYSPG FS+RAPP+L+R+FNERAFT+GIGGP
Sbjct: 26  GDSRTGAWVGPDGRVYHSHDGLAPHSHEPIYSPGSFSKRAPPLLTRDFNERAFTIGIGGP 85

Query: 90  VGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA 149
           VGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGCPHA
Sbjct: 86  VGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGCPHA 145

Query: 150 AIREDISINLGPLEELSNLFKADLLLCESGGGNL 183
           AIREDISINLGPLEELSNLFKAD+LLCESGG NL
Sbjct: 146 AIREDISINLGPLEELSNLFKADILLCESGGDNL 179

Source: Morus alba

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826907|ref|XP_002881336.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297327175|gb|EFH57595.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  296 bits (757), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 140/157 (89%), Positives = 148/157 (94%)

Query: 27  KNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGI 86
           K+ G    +SWVG DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP+  RNF+ERAFTVGI
Sbjct: 22  KSDGGEGKSSWVGKDGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLNDRNFSERAFTVGI 81

Query: 87  GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146
           GGPVGTGKTALMLALC+FLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGC
Sbjct: 82  GGPVGTGKTALMLALCRFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGC 141

Query: 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNL 183
           PHAAIREDISINLGPLEELSNLFKADLLLCESGG NL
Sbjct: 142 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL 178

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324312|ref|NP_001031481.1| urease accessory protein [Arabidopsis thaliana] gi|330253885|gb|AEC08979.1| urease accessory protein [Arabidopsis thaliana]

 Score =  295 bits (755), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 140/157 (89%), Positives = 147/157 (93%)

Query: 27  KNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGI 86
           K+ G     SWVG DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP+  RNF+ERAFTVGI
Sbjct: 20  KSDGGEGKASWVGKDGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLHDRNFSERAFTVGI 79

Query: 87  GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146
           GGPVGTGKTALMLALC+FLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGC
Sbjct: 80  GGPVGTGKTALMLALCRFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGC 139

Query: 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNL 183
           PHAAIREDISINLGPLEELSNLFKADLLLCESGG NL
Sbjct: 140 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL 176

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226754|ref|NP_180994.1| urease accessory protein [Arabidopsis thaliana] gi|3128220|gb|AAC26700.1| putative urease accessory protein [Arabidopsis thaliana] gi|20197163|gb|AAM14950.1| putative urease accessory protein [Arabidopsis thaliana] gi|21553947|gb|AAM63028.1| putative urease accessory protein [Arabidopsis thaliana] gi|26453270|dbj|BAC43708.1| putative urease accessory protein [Arabidopsis thaliana] gi|28950833|gb|AAO63340.1| At2g34470 [Arabidopsis thaliana] gi|330253884|gb|AEC08978.1| urease accessory protein [Arabidopsis thaliana]

 Score =  295 bits (754), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 140/157 (89%), Positives = 147/157 (93%)

Query: 27  KNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGI 86
           K+ G     SWVG DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP+  RNF+ERAFTVGI
Sbjct: 19  KSDGGEGKASWVGKDGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLHDRNFSERAFTVGI 78

Query: 87  GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146
           GGPVGTGKTALMLALC+FLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGC
Sbjct: 79  GGPVGTGKTALMLALCRFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGC 138

Query: 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNL 183
           PHAAIREDISINLGPLEELSNLFKADLLLCESGG NL
Sbjct: 139 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557339|ref|XP_002519700.1| Urease accessory protein ureG, putative [Ricinus communis] gi|223541117|gb|EEF42673.1| Urease accessory protein ureG, putative [Ricinus communis]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/149 (91%), Positives = 146/149 (97%)

Query: 35  TSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGK 94
           TSW+G+DGRVYHSHDGLAPHSHEPIYSPG+FSRRAPPIL+R+F+ERAFTVGIGGPVGTGK
Sbjct: 27  TSWLGADGRVYHSHDGLAPHSHEPIYSPGFFSRRAPPILTRDFSERAFTVGIGGPVGTGK 86

Query: 95  TALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED 154
           TALMLA+CKFLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGCPHAAIRED
Sbjct: 87  TALMLAICKFLRDKYSLAAVTNDIFTKEDGEFLIKNGALPEERIRAVETGGCPHAAIRED 146

Query: 155 ISINLGPLEELSNLFKADLLLCESGGGNL 183
           ISINLGPLEELS LFK D+LLCESGG NL
Sbjct: 147 ISINLGPLEELSKLFKTDILLCESGGDNL 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13161906|emb|CAC33000.1| urease accessory protein G [Solanum tuberosum]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/152 (89%), Positives = 148/152 (97%)

Query: 32  STATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVG 91
           + ATSWVG+DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP++ RNF+ERAFT+GIGGPVG
Sbjct: 27  TKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLIDRNFSERAFTIGIGGPVG 86

Query: 92  TGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151
           TGKTALMLALCK LRDKYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGGCPHAAI
Sbjct: 87  TGKTALMLALCKVLRDKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAI 146

Query: 152 REDISINLGPLEELSNLFKADLLLCESGGGNL 183
           REDISINLGPLEELSNL+KAD+LLCESGG NL
Sbjct: 147 REDISINLGPLEELSNLYKADILLCESGGDNL 178

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740673|emb|CBI30855.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/183 (78%), Positives = 158/183 (86%), Gaps = 3/183 (1%)

Query: 4   HDHHTHDHA---HHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIY 60
           +D H  D+     HHH  +D    H   H D  A SWVG DG++YHSHDGLAPH+HEPIY
Sbjct: 239 NDSHGEDYEPGNDHHHESSDDHKHHHHGHPDMKAESWVGPDGKLYHSHDGLAPHTHEPIY 298

Query: 61  SPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFT 120
           SPGYFSRRAPP+L+RNF+ERAFTVGIGGPVGTGKTALMLALC+ LR+KYSLAAVTNDIFT
Sbjct: 299 SPGYFSRRAPPLLTRNFHERAFTVGIGGPVGTGKTALMLALCQCLREKYSLAAVTNDIFT 358

Query: 121 KEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGG 180
           KEDGEFL+++GALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK D+LLCESGG
Sbjct: 359 KEDGEFLVKHGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKVDILLCESGG 418

Query: 181 GNL 183
            NL
Sbjct: 419 DNL 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13161904|emb|CAC32999.1| urease accessory protein G [Solanum tuberosum]

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 135/152 (88%), Positives = 148/152 (97%)

Query: 32  STATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVG 91
           + ATSWVG+DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP++ RNF+ERAFT+GIGGPVG
Sbjct: 21  TKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLIDRNFSERAFTIGIGGPVG 80

Query: 92  TGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151
           TGKTALMLALCK LR+KYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGGCPHAAI
Sbjct: 81  TGKTALMLALCKVLREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAI 140

Query: 152 REDISINLGPLEELSNLFKADLLLCESGGGNL 183
           REDISINLGPLEELSNL+KAD+LLCESGG NL
Sbjct: 141 REDISINLGPLEELSNLYKADILLCESGGDNL 172

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13161908|emb|CAC33001.1| urease accessory protein G [Solanum tuberosum]

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 136/152 (89%), Positives = 147/152 (96%)

Query: 32  STATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVG 91
           + ATSWVG+DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP+  RNFNERAFT+GIGGPVG
Sbjct: 29  TKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLNDRNFNERAFTIGIGGPVG 88

Query: 92  TGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151
           TGKTALMLALCK LR+KYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGGCPHAAI
Sbjct: 89  TGKTALMLALCKLLREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAI 148

Query: 152 REDISINLGPLEELSNLFKADLLLCESGGGNL 183
           REDISINLGPLEELSNL+KAD+LLCESGG NL
Sbjct: 149 REDISINLGPLEELSNLYKADILLCESGGDNL 180

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13161912|emb|CAC33003.1| urease accessory protein G [Solanum tuberosum]

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 135/152 (88%), Positives = 148/152 (97%)

Query: 32  STATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVG 91
           + ATSWVG+DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP++ RNF+ERAFT+GIGGPVG
Sbjct: 33  TKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLIDRNFSERAFTIGIGGPVG 92

Query: 92  TGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151
           TGKTALMLALCK LR+KYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGGCPHAAI
Sbjct: 93  TGKTALMLALCKVLREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAI 152

Query: 152 REDISINLGPLEELSNLFKADLLLCESGGGNL 183
           REDISINLGPLEELSNL+KAD+LLCESGG NL
Sbjct: 153 REDISINLGPLEELSNLYKADILLCESGGDNL 184

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2040894	276	UREG "AT2G34470" [Arabidopsis	0.830	0.568	0.891	4e-74
UNIPROTKB|G4NCH0	277	MGG_01086 "Uncharacterized pro	0.730	0.498	0.657	2.9e-48
ASPGD|ASPL0000062920	266	ureD [Emericella nidulans (tax	0.730	0.518	0.652	3.1e-44
POMBASE|SPCPB16A4.05c	286	SPCPB16A4.05c "urease accessor	0.687	0.454	0.648	4.7e-44
UNIPROTKB|Q48DC7	205	ureG "Urease accessory protein	0.560	0.517	0.635	2.6e-31
UNIPROTKB|P18319	205	ureG "Urease accessory protein	0.571	0.526	0.596	3.1e-28
UNIPROTKB|P0A664	224	ureG "Urease accessory protein	0.677	0.571	0.486	5e-28
TIGR_CMR|SPO_1717	215	SPO_1717 "urease accessory pro	0.529	0.465	0.574	1.4e-25

TAIR|locus:2040894 UREG "AT2G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 140/157 (89%), Positives = 147/157 (93%)

Query:    27 KNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGI 86
             K+ G     SWVG DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP+  RNF+ERAFTVGI
Sbjct:    20 KSDGGEGKASWVGKDGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLHDRNFSERAFTVGI 79

Query:    87 GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146
             GGPVGTGKTALMLALC+FLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGC
Sbjct:    80 GGPVGTGKTALMLALCRFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGC 139

Query:   147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNL 183
             PHAAIREDISINLGPLEELSNLFKADLLLCESGG NL
Sbjct:   140 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL 176

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0016151 "nickel cation binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=ISS

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0048554 "positive regulation of metalloenzyme activity" evidence=IMP

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|G4NCH0 MGG_01086 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 460 (167.0 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 96/146 (65%), Positives = 107/146 (73%)

Query:    46 HSHDGLA------PHSHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALM 98
             HSHDG         HSHE +  PG Y  R  P +  R+F+ERAFT+GIGGPVG+GKTALM
Sbjct:    15 HSHDGSTFNAQEHGHSHEILTGPGSYLGREMPIVEGRDFSERAFTIGIGGPVGSGKTALM 74

Query:    99 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158
             LALC  LRD +SLAAVTNDIFT+ED EFL RN ALP  RIRA+ETGGCPHAA+REDIS N
Sbjct:    75 LALCLALRDTHSLAAVTNDIFTREDAEFLTRNKALPPSRIRAIETGGCPHAAVREDISAN 134

Query:   159 LGPLEELSNLFKA-DLLLCESGGGNL 183
             L  LE+L   F   DLLL ESGG NL
Sbjct:   135 LACLEDLHRTFNGVDLLLIESGGDNL 160

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000062920 ureD [Emericella nidulans (taxid:162425)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 92/141 (65%), Positives = 111/141 (78%)

Query:    46 HSHDGLAPH--SHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALC 102
             HSHD +A H  SHE +  PG Y +R  P I  R++++RAFT+GIGGPVG+GKTALMLALC
Sbjct:     9 HSHDNIADHGHSHEILDGPGSYLNREQPLIEDRDWSDRAFTIGIGGPVGSGKTALMLALC 68

Query:   103 KFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL 162
             + LRD+Y++AAVTNDIFT+ED EFL RN AL  +RIRA+ETGGCPHAA+REDIS NL  L
Sbjct:    69 RALRDEYNIAAVTNDIFTREDAEFLTRNKALSPDRIRAIETGGCPHAAVREDISANLLAL 128

Query:   163 EELSNLFKADLLLCESGGGNL 183
             + L   F+ DLLL ESGG NL
Sbjct:   129 QNLHRQFQTDLLLIESGGDNL 149

GO:0043419 "urea catabolic process" evidence=IMP

GO:0009039 "urease activity" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016151 "nickel cation binding" evidence=IEA

POMBASE|SPCPB16A4.05c SPCPB16A4.05c "urease accessory protein UREG (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 445 (161.7 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
 Identities = 85/131 (64%), Positives = 103/131 (78%)

Query:    54 HSHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLA 112
             HSH+ + +PG Y  R  P    R+F+ RAFT+G+GGPVG+GKTAL+L LC+ L +KYS+ 
Sbjct:    58 HSHDAMETPGSYLKRELPQFNHRDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEKYSIG 117

Query:   113 AVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKAD 172
              VTNDIFT+ED EFL+RN ALPEERIRA+ETGGCPHAAIRED+S NL  LEEL + F  +
Sbjct:   118 VVTNDIFTREDQEFLIRNKALPEERIRAIETGGCPHAAIREDVSGNLVALEELQSEFNTE 177

Query:   173 LLLCESGGGNL 183
             LLL ESGG NL
Sbjct:   178 LLLVESGGDNL 188

GO:0003924 "GTPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016151 "nickel cation binding" evidence=IEA

GO:0016530 "metallochaperone activity" evidence=IEA

GO:0019627 "urea metabolic process" evidence=ISM

GO:0042803 "protein homodimerization activity" evidence=IEA

UNIPROTKB|Q48DC7 ureG "Urease accessory protein UreG" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 68/107 (63%), Positives = 83/107 (77%)

Query:    78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137
             N +   VGIGGPVG+GKTAL LALC  LRD+Y+LA VTNDI+T+ED +FL+RN AL  ER
Sbjct:     2 NSQPLRVGIGGPVGSGKTALTLALCLALRDRYNLAVVTNDIYTREDADFLVRNEALAPER 61

Query:   138 IRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGGNL 183
             I  VETGGCPH AIRED SINL  +++L+  F+  DL++ ESGG NL
Sbjct:    62 IIGVETGGCPHTAIREDASINLEAVDQLNRRFEGLDLIIVESGGDNL 108

GO:0016530 "metallochaperone activity" evidence=ISS

UNIPROTKB|P18319 ureG "Urease accessory protein UreG" [Enterobacter aerogenes (taxid:548)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 65/109 (59%), Positives = 75/109 (68%)

Query:    76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE 135
             N  +    VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+TKED   L   GAL  
Sbjct:     2 NSYKHPLRVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDIYTKEDQRILTEAGALAP 61

Query:   136 ERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNL 183
             ERI  VETGGCPH AIRED S+NL  +E LS  F   DL+  ESGG NL
Sbjct:    62 ERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLDLIFVESGGDNL 110

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P0A664 ureG "Urease accessory protein UreG" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 70/144 (48%), Positives = 91/144 (63%)

Query:    46 HSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL 105
             HSH    PHSH     P    +   P+           +G+GGPVG+GKTAL+ ALC+ L
Sbjct:     4 HSH----PHSHTVPARPRRVRKPGEPL----------RIGVGGPVGSGKTALVAALCRQL 49

Query:   106 RDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL 165
             R + SLA +TNDI+T ED +FL  +  LP++RI AV+TGGCPH AIR+DI+ NL  ++EL
Sbjct:    50 RGELSLAVLTNDIYTTEDADFLRTHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDEL 109

Query:   166 SNLFKA-DLLLCESGGGNLQTISF 188
                  A DL+L ESGG NL T +F
Sbjct:   110 MAAHDALDLILVESGGDNL-TATF 132

GO:0003924 "GTPase activity" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

TIGR_CMR|SPO_1717 SPO_1717 "urease accessory protein UreG" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 58/101 (57%), Positives = 71/101 (70%)

Query:    84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143
             VGIGGPVG GKT L  AL + LRD +S+  +TNDI+T+ED E LMR   LP++RI  VET
Sbjct:    10 VGIGGPVGAGKTTLTAALSEALRDSHSIGVITNDIYTREDAEALMRLQILPQDRIIGVET 69

Query:   144 GGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGGNL 183
             GGCPH AIRED SINL  + E+       +++L ESGG NL
Sbjct:    70 GGCPHTAIREDASINLAAVAEMERRHPGIEIILIESGGDNL 110


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.137   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      189       167   0.00075  108 3  11 22  0.41    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  148 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  16.40u 0.10s 16.50t   Elapsed:  00:00:00
  Total cpu time:  16.41u 0.10s 16.51t   Elapsed:  00:00:01
  Start:  Mon May 20 23:32:58 2013   End:  Mon May 20 23:32:59 2013

GO:0019627 "urea metabolic process" evidence=ISS

GO:0046872 "metal ion binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Al_scaffold_0004_1925	annotation not avaliable (278 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_201576.1	annotation not avaliable (837 aa)	•		•	•		•	•		0.992
	fgenesh2_kg.1__2374__AT1G21840.1	annotation not avaliable (240 aa)	•		•			•	•		0.971
	fgenesh2_kg.4__1529__AT2G35035.1	annotation not avaliable (293 aa)	•		•			•	•		0.964
	scaffold_601372.1	annotation not avaliable (1381 aa)							•		0.666
	fgenesh2_kg.4__1804__AT2G37500.1	annotation not avaliable (468 aa)				•			•		0.605
	fgenesh2_kg.1__3154__AT1G29900.1	annotation not avaliable (1183 aa)							•		0.583
	scaffold_701843.1	annotation not avaliable (495 aa)							•		0.561
	fgenesh2_kg.8__2775__AT5G66470.1	annotation not avaliable (427 aa)	•						•		0.561
	fgenesh2_kg.5__1206__AT3G48560.1	AT3G48560 (664 aa)							•		0.505
	fgenesh2_kg.5__2197__AT3G57560.1	annotation not avaliable (346 aa)							•		0.497

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	189
TIGR00101	199	TIGR00101, ureG, urease accessory protein UreG	5e-43
COG0378	202	COG0378, HypB, Ni2+-binding GTPase involved in reg	1e-30
pfam02492	178	pfam02492, cobW, CobW/HypB/UreG, nucleotide-bindin	6e-22
PRK10019	279	PRK10019, PRK10019, nickel/cobalt efflux protein R	2e-05
PRK09545	311	PRK09545, znuA, high-affinity zinc transporter per	2e-05
PRK09545	311	PRK09545, znuA, high-affinity zinc transporter per	1e-04
PRK10019	279	PRK10019, PRK10019, nickel/cobalt efflux protein R	3e-04
PRK10019	279	PRK10019, PRK10019, nickel/cobalt efflux protein R	5e-04
PRK10019	279	PRK10019, PRK10019, nickel/cobalt efflux protein R	0.001
COG1072	283	COG1072, CoaA, Panthothenate kinase [Coenzyme meta	0.001
PRK13263	206	PRK13263, ureE, urease accessory protein UreE; Pro	0.001
cd01019	286	cd01019, ZnuA, Zinc binding protein ZnuA	0.001
PRK09545	311	PRK09545, znuA, high-affinity zinc transporter per	0.002
cd01019	286	cd01019, ZnuA, Zinc binding protein ZnuA	0.002
pfam10986	161	pfam10986, DUF2796, Protein of unknown function (D	0.002
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	0.002
TIGR00073	208	TIGR00073, hypB, hydrogenase accessory protein Hyp	0.003
PRK13263	206	PRK13263, ureE, urease accessory protein UreE; Pro	0.004

>gnl|CDD|129208 TIGR00101, ureG, urease accessory protein UreG

 Score =  141 bits (358), Expect = 5e-43
 Identities = 59/101 (58%), Positives = 75/101 (74%), Gaps = 1/101 (0%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143
           +G+ GPVG+GKTAL+ AL + LR KY LA +TNDI+T+ED EFL++N ALP ERI  VET
Sbjct: 4   IGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVET 63

Query: 144 GGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNL 183
           GGCPH AIRED S+NL  + E+   F   +++  ESGG NL
Sbjct: 64  GGCPHTAIREDASMNLEAVAEMEARFPPLEMVFIESGGDNL 104

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel [Central intermediary metabolism, Nitrogen metabolism]. Length = 199

>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

 Score =  110 bits (277), Expect = 1e-30
 Identities = 49/108 (45%), Positives = 63/108 (58%), Gaps = 11/108 (10%)

Query: 78  NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137
           N     +G+GGP G+GKTAL+    + L+D+Y +A +T DI+TKED + L +    P E 
Sbjct: 10  NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL---PGEP 66

Query: 138 IRAVETG-GCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNL 183
           I  VETG GC H     D S+NL  +EEL   F   DLL  ES  GNL
Sbjct: 67  IIGVETGKGC-H----LDASMNLEAIEELVLDFPDLDLLFIES-VGNL 108

Length = 202

>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain

 Score = 87.3 bits (217), Expect = 6e-22
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 82  FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRA 140
               + G +G+GKT L+  L +  R+   +A + ND   T  D E L   GAL    I  
Sbjct: 1   PVTVLTGFLGSGKTTLLEHLLEKNREGLKIAVIVNDFGETGIDAELLRETGAL----IVE 56

Query: 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGG 180
           +  G       RED+S+ L  L EL    + DLL  E+ G
Sbjct: 57  LNNGCICCTL-REDLSMVLEALLELKE--RLDLLFIETTG 93

This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans. Length = 178

>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 6   HHTHDHAHHHHHDNDHDHTHEKNH-GDSTATSW 37
           HH HDH H H H++ HDH H  +H   +TA  +
Sbjct: 122 HHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEY 154

Length = 279

>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 4   HDHHTHDHAHHHHHDNDHDHTH 25
            DHH  DH H  H  +D DH H
Sbjct: 119 DDHHDDDHDHAGHEKSDEDHHH 140

Length = 311

>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 1   MASHDHHTHDHAHHHHHDNDHDHTHEKNHGD 31
           M       HD  H H      D  H  +HG+
Sbjct: 114 MKGAHDDHHDDDHDHAGHEKSDEDH--HHGE 142

Length = 311

>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 3   SHDHHTHDHAHHHHHDNDHDHTHEKNHG 30
             +   + H H H HD+DHDH H  +HG
Sbjct: 113 ERNWLENMHHHDHDHDHDHDHEHHHDHG 140

Length = 279

>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 4   HDHHTHDHAHHHHHDNDHDHTH 25
              H HDH HHH H + H H H
Sbjct: 126 DHDHDHDHEHHHDHGHHHHHEH 147

Length = 279

>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 15/47 (31%)

Query: 11  HAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHE 57
           + HHH HD+DHDH HE +H                H H     H   
Sbjct: 119 NMHHHDHDHDHDHDHEHHHD---------------HGHHHHHEHGAT 150

Length = 279

>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 73  LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGA 132
           L  N  +R F +GI G V  GK+     L   L        V  D+ T  DG F   N  
Sbjct: 74  LGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKV--DLVTM-DG-FHYPNAV 129

Query: 133 LPEERIRA 140
           L E  + A
Sbjct: 130 LDERGLMA 137

Length = 283

>gnl|CDD|237323 PRK13263, ureE, urease accessory protein UreE; Provisional

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 4   HDHHTHDHAHHHHHDNDHDHTHEKNHGDS 32
           H+HH H H+H  H  +DHDH H+  HG  
Sbjct: 169 HEHHGHSHSHSDHD-HDHDHDHDHVHGPG 196

Length = 206

>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 15/49 (30%)

Query: 6   HHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPH 54
               D A H  H++DH+H H ++ G               H   GL PH
Sbjct: 89  KTLEDGASHGDHEHDHEHAHGEHDG---------------HEEGGLDPH 122

These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). Length = 286

>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 3   SHDHHTHDHAHHHHHDNDHD 22
            HDH  H+ +   HH  +++
Sbjct: 125 DHDHAGHEKSDEDHHHGEYN 144

Length = 311

>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 2   ASHDHHTHDHAHHHHHDNDHDHTHEKNH 29
           ASH  H HDH H H   + H+      H
Sbjct: 95  ASHGDHEHDHEHAHGEHDGHEEGGLDPH 122

These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). Length = 286

>gnl|CDD|220924 pfam10986, DUF2796, Protein of unknown function (DUF2796)

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 9/33 (27%), Positives = 10/33 (30%)

Query: 3   SHDHHTHDHAHHHHHDNDHDHTHEKNHGDSTAT 35
           S         H H H + HD      H D  A 
Sbjct: 79  SLFGDHDHDHHDHDHHDHHDDHEHAGHSDFHAE 111

This bacterial family of proteins has no known function. Length = 161

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 88  GPVGTGKTALMLALCKFL-RDKYSLAAVT-NDIFTKEDGEFLMRNGALPEERIRAVETGG 145
           GP GTGKT L  A+   L R       +  +D+        L  +  +      A +   
Sbjct: 26  GPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKP 85

Query: 146 C 146
            
Sbjct: 86  G 86

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|232811 TIGR00073, hypB, hydrogenase accessory protein HypB

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 25/125 (20%)

Query: 72  ILSRN----------FNERA-FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFT 120
           ILS N           ++     +      G+GKT L+  L   L+D+  +A +  D+ T
Sbjct: 2   ILSANKRLAEKNRERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVIT 61

Query: 121 KEDGEFLMRNGALPEERIRAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCES 178
           K D E L + GA        + TG   H  A +          LE+L      DLL  E+
Sbjct: 62  KFDAERLRKYGAPAI----QINTGKECHLDAHMVAHA------LEDLPLD-DIDLLFIEN 110

Query: 179 GGGNL 183
             GNL
Sbjct: 111 -VGNL 114

A GTP hydrolase for assembly of nickel metallocenter of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel. hits scoring 75 and above are safe as orthologs. [SS 1/05/04 I changed the role_ID and process GO from protein folding to to protein modification, since a protein folding role has not been established, but HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.] [Protein fate, Protein modification and repair]. Length = 208

>gnl|CDD|237323 PRK13263, ureE, urease accessory protein UreE; Provisional

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 3   SHDHHTHDHAHHHH---HDNDHDHTHEKNHG 30
            H  H+H H+ H H   HD+DH H     HG
Sbjct: 170 EHHGHSHSHSDHDHDHDHDHDHVHGPGCGHG 200

Length = 206

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.96
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.95
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.94
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.94
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.94
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.94
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.94
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.94
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.94
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.93
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.93
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.92
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.92
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.91
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.91
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.91
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.91
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.91
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.91
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.91
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.9
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.9
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.9
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.9
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.9
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.9
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.9
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.9
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.9
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.9
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.9
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.9
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.9
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.9
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.89
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.89
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.89
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.89
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.89
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.89
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.89
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.89
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.89
PRK10908	222	cell division protein FtsE; Provisional	99.89
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.89
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.89
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.89
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.89
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.89
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.89
COG4559	259	ABC-type hemin transport system, ATPase component	99.89
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.89
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.89
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.89
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.89
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.89
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.89
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.89
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.89
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.89
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.88
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.88
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.88
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.88
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.88
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.88
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.88
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.88
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.88
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.88
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.88
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.88
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.88
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.88
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.88
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.88
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.88
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.88
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.88
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.88
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.88
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.88
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.88
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.88
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.88
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.88
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.88
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.88
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.88
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.88
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.88
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.87
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.87
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.87
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.87
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.87
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.87
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.87
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.87
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.87
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.87
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
COG4181	228	Predicted ABC-type transport system involved in ly	99.87
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.87
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.87
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.87
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.87
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.87
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.87
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.87
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.87
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.87
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.87
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.87
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.86
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.86
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.86
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.86
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.86
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.86
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.86
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.86
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.86
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.86
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.86
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.86
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.86
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.86
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.86
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.86
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.86
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.86
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.86
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.86
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.86
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.85
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.85
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.85
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.85
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.85
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.85
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.85
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.85
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.85
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.85
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.85
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.85
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.85
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.85
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.85
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.85
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.85
PRK10938	490	putative molybdenum transport ATP-binding protein	99.85
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.85
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.85
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.85
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.85
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.85
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.85
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.85
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.85
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.85
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.85
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.85
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.85
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.85
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.85
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.84
COG1123	539	ATPase components of various ABC-type transport sy	99.84
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.84
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.84
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.84
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.84
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.84
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.84
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.84
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.84
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.84
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.84
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.84
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.84
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.84
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.84
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.84
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.84
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.84
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.84
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.83
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.83
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.83
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.83
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.83
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.83
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.83
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.83
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.83
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.83
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.83
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.83
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.83
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.83
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.83
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.83
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.83
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.83
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.83
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.83
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.83
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.83
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.82
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.82
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.82
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.82
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.82
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.82
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.82
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.82
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.82
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.82
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.82
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.82
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.82
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.81
PRK10938	490	putative molybdenum transport ATP-binding protein	99.81
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.81
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.81
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.81
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.81
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.81
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.81
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.81
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.81
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.8
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.8
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.8
COG4172	534	ABC-type uncharacterized transport system, duplica	99.8
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.8
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.8
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.8
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.8
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.8
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.8
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.8
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.8
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.8
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.79
COG1123	539	ATPase components of various ABC-type transport sy	99.79
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.79
COG4988	559	CydD ABC-type transport system involved in cytochr	99.79
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.79
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.79
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.79
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.78
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.78
cd03246	173	ABCC_Protease_Secretion This family represents the	99.78
PRK13409	590	putative ATPase RIL; Provisional	99.78
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.78
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.78
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.78
PTZ00243	1560	ABC transporter; Provisional	99.78
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.78
PLN03232	1495	ABC transporter C family member; Provisional	99.78
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.77
PLN03211	659	ABC transporter G-25; Provisional	99.77
PLN03130	1622	ABC transporter C family member; Provisional	99.77
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.77
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.77
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.77
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.77
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.77
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.77
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.77
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.76
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.76
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.76
PRK13409	590	putative ATPase RIL; Provisional	99.76
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.75
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.75
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.75
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.75
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.75
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.75
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.75
PRK11147	635	ABC transporter ATPase component; Reviewed	99.74
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.74
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.74
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.74
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.74
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.74
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.74
COG4987	573	CydC ABC-type transport system involved in cytochr	99.74
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.74
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.73
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.73
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.73
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.73
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.73
PLN03073	718	ABC transporter F family; Provisional	99.73
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.73
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.73
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.73
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.72
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.72
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.72
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.71
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.71
PLN03140	1470	ABC transporter G family member; Provisional	99.7
COG4172	534	ABC-type uncharacterized transport system, duplica	99.7
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.69
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.69
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.69
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.69
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.69
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.68
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.66
PRK11147	635	ABC transporter ATPase component; Reviewed	99.66
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.65
COG0488	530	Uup ATPase components of ABC transporters with dup	99.65
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.65
PLN03140	1470	ABC transporter G family member; Provisional	99.64
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.62
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.61
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.61
PLN03073	718	ABC transporter F family; Provisional	99.61
PLN03232	1495	ABC transporter C family member; Provisional	99.6
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.59
PTZ00243	1560	ABC transporter; Provisional	99.59
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.58
COG0488	530	Uup ATPase components of ABC transporters with dup	99.57
PLN03130	1622	ABC transporter C family member; Provisional	99.56
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.53
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.53
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.53
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.51
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.49
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.45
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.45
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.44
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.43
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.39
COG4178	604	ABC-type uncharacterized transport system, permeas	99.37
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.29
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.27
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.25
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.24
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.24
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.24
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.18
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.18
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.18
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.15
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.15
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.08
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.07
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.05
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.02
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.99
KOG0062	582	consensus ATPase component of ABC transporters wit	98.96
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.93
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.92
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.87
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.86
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.85
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.85
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.83
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.82
KOG0062	582	consensus ATPase component of ABC transporters wit	98.81
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.78
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.74
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.73
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.7
PRK09825	176	idnK D-gluconate kinase; Provisional	98.64
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.63
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.62
PRK06315	442	type III secretion system ATPase; Provisional	98.62
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.61
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.6
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.57
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	98.57
PRK03846	198	adenylylsulfate kinase; Provisional	98.56
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.56
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.54
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.54
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.54
PRK10416	318	signal recognition particle-docking protein FtsY;	98.52
PRK00300	205	gmk guanylate kinase; Provisional	98.52
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.5
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.49
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.47
cd01128	249	rho_factor Transcription termination factor rho is	98.46
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.38
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.35
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.35
PLN02796	347	D-glycerate 3-kinase	98.35
cd03239	178	ABC_SMC_head The structural maintenance of chromos	98.34
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.27
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.25
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.23
PRK05480	209	uridine/cytidine kinase; Provisional	98.22
PRK08149	428	ATP synthase SpaL; Validated	98.22
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.21
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.21
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.2
PRK01889	356	GTPase RsgA; Reviewed	98.19
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.18
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.17
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.14
PRK00098	298	GTPase RsgA; Reviewed	98.14
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.13
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.1
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.09
smart00382	148	AAA ATPases associated with a variety of cellular	98.07
PRK00889	175	adenylylsulfate kinase; Provisional	98.06
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.06
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.03
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.03
PRK07429	327	phosphoribulokinase; Provisional	98.01
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.01
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.0
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.98
PRK11545	163	gntK gluconate kinase 1; Provisional	97.98
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.97
PLN02165	334	adenylate isopentenyltransferase	97.97
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.97
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.97
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.95
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.95
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.94
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.94
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.93
PRK04863	1486	mukB cell division protein MukB; Provisional	97.93
PLN02318	656	phosphoribulokinase/uridine kinase	97.93
PRK07594	433	type III secretion system ATPase SsaN; Validated	97.92
PRK05541	176	adenylylsulfate kinase; Provisional	97.91
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.91
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.91
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	97.9
PLN03046	460	D-glycerate 3-kinase; Provisional	97.9
PRK09099	441	type III secretion system ATPase; Provisional	97.9
PRK05922	434	type III secretion system ATPase; Validated	97.89
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.87
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	97.87
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.87
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.86
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	97.85
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.84
PRK09862	506	putative ATP-dependent protease; Provisional	97.84
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.83
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.83
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	97.82
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.82
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.82
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	97.81
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.8
cd03114	148	ArgK-like The function of this protein family is u	97.79
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.79
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.79
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.78
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.78
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.77
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	97.77
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.76

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.96  E-value=2.1e-29  Score=212.72  Aligned_cols=121  Identities=27%  Similarity=0.323  Sum_probs=106.6

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      .....+++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|+++.+.+.+++.+.++||||.+.        
T Consensus        15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~   94 (258)
T COG1120          15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVY   94 (258)
T ss_pred             eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEe
Confidence            34455566655 48999999999999999999999999998 999999999999999999999999999964        


Q ss_pred             HHHHhcCCCCCCh-----HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHAAI-----REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~~~-----~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+.+|+.++..+     ++|.+.+.++|+.+++....++.+.+|||||||||.|+
T Consensus        95 d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iA  150 (258)
T COG1120          95 ELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIA  150 (258)
T ss_pred             ehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHH
Confidence            6788888876654     45777899999999999999999999999999999764

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=7.7e-28  Score=197.69  Aligned_cols=119  Identities=20%  Similarity=0.179  Sum_probs=96.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC-chHHHhhhceeccchhH--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-EDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~-~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      ...++++.- +||+++|+||+|||||||||||.+|.+|+ |+|.|+|.++... +..++|+++|+|||+++        +
T Consensus        17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvle   96 (240)
T COG1126          17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLE   96 (240)
T ss_pred             EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHH
Confidence            344455444 59999999999999999999999999999 9999999877432 45567889999999987        4


Q ss_pred             HHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      |+.++-.  ..+...+..+++.++|+++||.+..+.+|.+|||||||||||+
T Consensus        97 Nv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIA  148 (240)
T COG1126          97 NVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIA  148 (240)
T ss_pred             HHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHH
Confidence            4444322  1223355677899999999999999999999999999999985

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=2e-27  Score=200.08  Aligned_cols=117  Identities=20%  Similarity=0.249  Sum_probs=96.4

Q ss_pred             CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------
Q 029723           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------  138 (189)
Q Consensus        70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------  138 (189)
                      ++..+++|. ++|++++||||||||||||||+|+|+++|. |+|.+.+.++....   .+.+||||||...         
T Consensus        18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~---~~~~IgYVPQ~~~~d~~fP~tV   94 (254)
T COG1121          18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR---KRLRIGYVPQKSSVDRSFPITV   94 (254)
T ss_pred             eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc---cCCeEEEcCcccccCCCCCcCH
Confidence            466777774 458999999999999999999999999998 99999998774321   1358999999653         


Q ss_pred             -HHHHhcCCCCCCh-----HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCPHAAI-----REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~~~~-----~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +.+.+|......+     +++.+++.++|+++++.+..++.+.+|||||+|||-|+
T Consensus        95 ~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lA  151 (254)
T COG1121          95 KDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLA  151 (254)
T ss_pred             HHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHH
Confidence             5666765544332     46788999999999999999999999999999999764

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.94  E-value=3.3e-27  Score=206.05  Aligned_cols=117  Identities=13%  Similarity=0.023  Sum_probs=99.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      +..++++.- +||+++|+||||||||||||+|+||++|+ |+|.|+|.+++..++.+  |.|++|||+++        +|
T Consensus        18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamVFQ~yALyPhmtV~~N   95 (338)
T COG3839          18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMVFQNYALYPHMTVYEN   95 (338)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEEeCCccccCCCcHHHH
Confidence            444555554 59999999999999999999999999999 99999999998877765  68999999986        56


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++... .....+..+++.++++.|+|+..++++|.+||||||||||++
T Consensus        96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAla  145 (338)
T COG3839          96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALA  145 (338)
T ss_pred             hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHH
Confidence            6665432 223456688999999999999999999999999999999974

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.94  E-value=4e-27  Score=195.43  Aligned_cols=121  Identities=18%  Similarity=0.095  Sum_probs=95.2

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH----
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI----  138 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~----  138 (189)
                      ..+...++|.- +||+++|+||+||||||||++|.|+.+|+ |.|.|+|.++...+..++    ++.||||||+.+    
T Consensus        18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~   97 (226)
T COG1136          18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD   97 (226)
T ss_pred             eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence            34555666655 49999999999999999999999999999 999999999987775443    458999999976    


Q ss_pred             ----HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhc-cccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HAAIREDISINLGPLEELSNLFKAD-LLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~-~~~~eLSGGqrq~~~~i  189 (189)
                          +|+.+.... .........++.++++.|+|.+... ++|.+|||||||||||+
T Consensus        98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA  154 (226)
T COG1136          98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA  154 (226)
T ss_pred             CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence                566543211 1111135667888999999987666 89999999999999985

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=3e-27  Score=197.59  Aligned_cols=116  Identities=17%  Similarity=0.067  Sum_probs=95.3

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ..+..+++|.- +||+++||||+|||||||||+|+|+++|+ |+|.++|..+..     ....++||||++.        
T Consensus        16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~-----p~~~~~~vFQ~~~LlPW~Tv~   90 (248)
T COG1116          16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG-----PGPDIGYVFQEDALLPWLTVL   90 (248)
T ss_pred             eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC-----CCCCEEEEeccCcccchhhHH
Confidence            44555666665 49999999999999999999999999999 999999998732     2347999999976        


Q ss_pred             HHHHhcCCCC-CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~-~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +|+.++.... ....+..+++.++|+.+||....+++|.+|||||||||||+
T Consensus        91 ~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiA  142 (248)
T COG1116          91 DNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIA  142 (248)
T ss_pred             hhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHH
Confidence            6666665432 23344556899999999999999999999999999999984

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.94  E-value=4.3e-27  Score=206.25  Aligned_cols=119  Identities=18%  Similarity=0.086  Sum_probs=99.8

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ..+..++++.- +||+++|+||||||||||||+|+|+..|+ |+|.++|++++..++.  +|.||+|||+.+        
T Consensus        18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~VFQ~YALFPHltV~   95 (352)
T COG3842          18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVE   95 (352)
T ss_pred             eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccceeecCcccCCCCcHH
Confidence            34455555544 58999999999999999999999999999 9999999999876654  478999999976        


Q ss_pred             HHHHhcCCCCC--ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHA--AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~--~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +||.+|.....  ...+..+++.++|+.++|....+++|.+||||||||||++
T Consensus        96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALA  148 (352)
T COG3842          96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALA  148 (352)
T ss_pred             HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHH
Confidence            78888876221  1234567999999999999999999999999999999974

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=7.9e-27  Score=200.05  Aligned_cols=121  Identities=18%  Similarity=0.092  Sum_probs=101.5

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH-----
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI-----  138 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~-----  138 (189)
                      ..+.++++|.-+ |+++||||.+|||||||+|||.+|.+|+ |+|.++|.++..++..+   +|++||++||.++     
T Consensus        19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr   98 (339)
T COG1135          19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR   98 (339)
T ss_pred             eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence            456677777665 9999999999999999999999999999 99999999998776554   4679999999987     


Q ss_pred             ---HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +|+.+... ......+...++.++|+.+||.+..+++|.+|||||||||+|+
T Consensus        99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIA  153 (339)
T COG1135          99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIA  153 (339)
T ss_pred             hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHH
Confidence               34444332 1233456778999999999999999999999999999999984

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.94  E-value=8.5e-27  Score=195.69  Aligned_cols=121  Identities=16%  Similarity=0.059  Sum_probs=100.1

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ..+.++++|.- +||+++||||+||||||+||+|.+|+.|+ |+|.++|.++...+..++|++||||.|...        
T Consensus        14 ~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~   93 (309)
T COG1125          14 KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVA   93 (309)
T ss_pred             ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHH
Confidence            44556666655 58999999999999999999999999999 999999999999999999999999999854        


Q ss_pred             HHHHhc-CCCCCChHHHHHHHHHHHhhcCCch--hhccccccCChHHHHhhhcC
Q 029723          139 RAVETG-GCPHAAIREDISINLGPLEELSNLF--KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g-~~~~~~~~~d~~~v~~~L~~lgL~~--~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +|+.+- ....+..++..+++.++|+.++|+.  ..+++|.||||||||||.++
T Consensus        94 eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~  147 (309)
T COG1125          94 ENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVA  147 (309)
T ss_pred             HHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHH
Confidence            343331 1122333566788999999999974  78999999999999999764

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=3.4e-26  Score=189.93  Aligned_cols=119  Identities=22%  Similarity=0.207  Sum_probs=100.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~-------  138 (189)
                      +..+++|+- +||+++|||++|||||||||+|.|+..|+ |+|.+++.++.....++   +++.|||+||.++       
T Consensus        19 aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv   98 (258)
T COG3638          19 ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSV   98 (258)
T ss_pred             eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHH
Confidence            444555544 59999999999999999999999999999 99999999998776554   4678999999987       


Q ss_pred             -HHHHhcCCCCCCh---------HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCPHAAI---------REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~~~~---------~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +|+..|...+..+         +++..++.++|++|||.+.+..+..+|||||||||+|+
T Consensus        99 ~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIA  159 (258)
T COG3638          99 LENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIA  159 (258)
T ss_pred             HHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHH
Confidence             6677766554432         67888999999999999999999999999999999984

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=5.7e-26  Score=194.62  Aligned_cols=119  Identities=14%  Similarity=0.053  Sum_probs=98.5

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec---CCCCCchHHHhhhceeccchhH-----
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTKEDGEFLMRNGALPEERI-----  138 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~---di~~~~~~~~~~~iG~v~Q~~~-----  138 (189)
                      ..+..++++.-+ ||+++|+|||||||||||++|+||+.|+ |.|.+++.   |.+.  .....|+||||||+..     
T Consensus        15 ~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~--~~~~~R~VGfvFQ~YALF~Hm   92 (345)
T COG1118          15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN--LAVRDRKVGFVFQHYALFPHM   92 (345)
T ss_pred             ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc--cchhhcceeEEEechhhcccc
Confidence            334446666655 8999999999999999999999999999 99999999   5543  2344579999999986     


Q ss_pred             ---HHHHhcCCCC---CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCPH---AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~~---~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +||.||....   ....+.+.++.++|+.+.|+...+++|.+||||||||||++
T Consensus        93 tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALA  149 (345)
T COG1118          93 TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALA  149 (345)
T ss_pred             hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHH
Confidence               7788886443   22245678899999999999999999999999999999974

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.92  E-value=9.1e-26  Score=182.46  Aligned_cols=121  Identities=18%  Similarity=0.127  Sum_probs=100.2

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH-----
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI-----  138 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~-----  138 (189)
                      ..+..+++|.- +||++-|+||+|||||||||+|++..+|+ |+|.+++.|+......+   ++|+||+|||+.-     
T Consensus        15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~   94 (223)
T COG2884          15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR   94 (223)
T ss_pred             chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccc
Confidence            44566677765 49999999999999999999999999999 99999999998766555   4789999999964     


Q ss_pred             ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +|+.+...- ....++..+++.++|+.+||....+..|.+|||||||||+|+
T Consensus        95 tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA  149 (223)
T COG2884          95 TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA  149 (223)
T ss_pred             hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH
Confidence               455443321 122355678899999999999999999999999999999984

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.4e-25  Score=187.74  Aligned_cols=121  Identities=18%  Similarity=0.081  Sum_probs=99.8

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC-CchHHHhhhceeccchhH-------
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT-KEDGEFLMRNGALPEERI-------  138 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~-~~~~~~~~~iG~v~Q~~~-------  138 (189)
                      .++..+++|.- +|++++|+|+||||||||+++|+|+++|+ |.|.++|.++.. .+..++++++|||||+|.       
T Consensus        17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t   96 (235)
T COG1122          17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT   96 (235)
T ss_pred             ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence            44555555555 49999999999999999999999999999 999999998862 567788999999999996       


Q ss_pred             --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +.+.++... .+...+..+++.++|+.+++...+++.+.+|||||||||+|+
T Consensus        97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA  150 (235)
T COG1122          97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIA  150 (235)
T ss_pred             HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhh
Confidence              334455433 223345678899999999999999999999999999999985

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.91  E-value=3.7e-25  Score=178.24  Aligned_cols=108  Identities=19%  Similarity=0.150  Sum_probs=96.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAA  150 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~~  150 (189)
                      .||+++|+||+||||||||++|+|++.|. |.|.|+|.|.+...+.+  |-+.++||+.+        +|+.+|..+.+.
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSmlFQEnNLFaHLtV~qNigLGl~P~Lk  101 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSMLFQENNLFAHLTVAQNIGLGLSPGLK  101 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhhhhhccccchhhhhhhhhcccCCcccc
Confidence            58999999999999999999999999998 99999999998766654  56889999976        677777777766


Q ss_pred             h-HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          151 I-REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       151 ~-~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      . .++.+++..++.++||....+++|.+||||||||||++
T Consensus       102 L~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALA  141 (231)
T COG3840         102 LNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALA  141 (231)
T ss_pred             cCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHH
Confidence            5 56788999999999999999999999999999999974

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.91  E-value=6.7e-25  Score=188.74  Aligned_cols=120  Identities=22%  Similarity=0.195  Sum_probs=97.4

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ..+.++++|.-+ |+++||+||||||||||||+|+|+++|+ |+|.++|.++... ..+.++.+|||+|++.        
T Consensus        18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~~~~~lT~~   96 (293)
T COG1131          18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPSLYPELTVR   96 (293)
T ss_pred             CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEEccCCCCCccccHH
Confidence            446677777765 8999999999999999999999999999 9999999998643 5677889999999986        


Q ss_pred             HHHHhcCCCCCCh-HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~~~-~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.+....+... ..+.+++.++|+.++|....++++.+||+|||||++|+
T Consensus        97 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia  148 (293)
T COG1131          97 ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIA  148 (293)
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHH
Confidence            4444432222211 23567899999999999766889999999999999874

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.91  E-value=9.7e-25  Score=191.55  Aligned_cols=120  Identities=17%  Similarity=0.075  Sum_probs=96.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~------  138 (189)
                      .+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+   ++++|+|+||++.      
T Consensus        19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t   98 (343)
T TIGR02314        19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT   98 (343)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence            4567777764 59999999999999999999999999998 99999999997655443   4668999999965      


Q ss_pred             --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.+... ......+..+++.++|+.++|.+..++++.+|||||||||+|+
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IA  152 (343)
T TIGR02314        99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIA  152 (343)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence              44444321 1122334556788999999999899999999999999999974

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.8e-24  Score=190.69  Aligned_cols=117  Identities=15%  Similarity=-0.013  Sum_probs=94.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....+.  ++.|+||||++.        +|
T Consensus        19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~lfp~~tv~eN   96 (356)
T PRK11650         19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYALYPHMSVREN   96 (356)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCccccCCCCHHHH
Confidence            445566655 58999999999999999999999999998 9999999998655443  368999999875        55


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++... .....+...++.++|+.++|....++++.+|||||||||+|+
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalA  146 (356)
T PRK11650         97 MAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMG  146 (356)
T ss_pred             HHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence            5554321 122233456788999999999899999999999999999974

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.91  E-value=1.6e-24  Score=191.51  Aligned_cols=119  Identities=14%  Similarity=0.078  Sum_probs=96.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~------  138 (189)
                      +..+++|.- +||+++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++    ++.++||||++.      
T Consensus         8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T   87 (363)
T TIGR01186         8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT   87 (363)
T ss_pred             eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence            445566654 59999999999999999999999999999 999999999987766655    668999999865      


Q ss_pred             --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus        88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lA  141 (363)
T TIGR01186        88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLA  141 (363)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHH
Confidence              445443211 122233456789999999999889999999999999999874

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.91  E-value=2.3e-24  Score=178.47  Aligned_cols=119  Identities=22%  Similarity=0.201  Sum_probs=91.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch---HHHhhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~---~~~~~~iG~v~Q~~~-------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+.   ..+++.++|++|++.       
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   94 (235)
T cd03261          15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTV   94 (235)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcH
Confidence            445566654 59999999999999999999999999998 999999998865443   345678999999864       


Q ss_pred             -HHHHhcCCC--CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++...  .....+...++.++|+.++|....++++.+|||||||||+|+
T Consensus        95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia  148 (235)
T cd03261          95 FENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA  148 (235)
T ss_pred             HHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence             333332111  112223345688899999998888999999999999999874

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.91  E-value=3.5e-24  Score=172.13  Aligned_cols=119  Identities=18%  Similarity=0.107  Sum_probs=89.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--CchHHHhhhceeccchhH--------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..  .....+++.++|++|++.        
T Consensus         7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv   86 (190)
T TIGR01166         7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADV   86 (190)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccH
Confidence            445555554 59999999999999999999999999998 999999988742  122345668999999873        


Q ss_pred             -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.+.... .....+..+++.++++.++|....++++.+||+|||||++|+
T Consensus        87 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  139 (190)
T TIGR01166        87 DQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIA  139 (190)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHH
Confidence             233222111 111122345678899999998888999999999999999874

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.90  E-value=3e-24  Score=178.94  Aligned_cols=119  Identities=17%  Similarity=0.128  Sum_probs=94.1

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc-hHHHhhhceeccchhHH-------
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIR-------  139 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~-~~~~~~~iG~v~Q~~~~-------  139 (189)
                      .+.++++|+-. ||++||+|++|||||||.++|+|+.+|+ |+|.++|..+.... ...+.+.|.+|||+|..       
T Consensus        21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t  100 (252)
T COG1124          21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT  100 (252)
T ss_pred             hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence            57788888765 9999999999999999999999999999 99999998775432 33567889999999861       


Q ss_pred             ---HHHhcCCCCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          140 ---AVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ---~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                         .+...... ....+..+++.++|+.++|.. .++++|.+|||||+||++|+
T Consensus       101 v~~~l~Epl~~-~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIA  153 (252)
T COG1124         101 VGRILSEPLRP-HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIA  153 (252)
T ss_pred             HHHHHhhhhcc-CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHH
Confidence               11111111 112234455899999999975 78999999999999999985

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.90  E-value=2.3e-24  Score=179.51  Aligned_cols=120  Identities=22%  Similarity=0.181  Sum_probs=97.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~------  138 (189)
                      ....+++|.- +||+++|+||+|||||||||+|.|+++|+ |+|.++|.++...+..+   +++++|++||.-+      
T Consensus        22 ~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFsslt  101 (263)
T COG1127          22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLT  101 (263)
T ss_pred             EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccc
Confidence            3445556554 59999999999999999999999999999 99999999998776543   4678999999865      


Q ss_pred             --HHHHhcCCCCCCh--HHHHHHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCPHAAI--REDISINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~~~~~--~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i  189 (189)
                        +|+.+....+...  +...+.+...|+.+||... .+++|.||||||++||+|+
T Consensus       102 V~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLA  157 (263)
T COG1127         102 VFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALA  157 (263)
T ss_pred             hhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHH
Confidence              5555544444332  3455677888999999876 8999999999999999974

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.90  E-value=4.2e-24  Score=173.86  Aligned_cols=119  Identities=18%  Similarity=0.068  Sum_probs=91.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~  139 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+...+++.++|++|++.         +
T Consensus        16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~   95 (211)
T cd03225          16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEE   95 (211)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHH
Confidence            455666664 69999999999999999999999999998 999999998865545556778999999863         2


Q ss_pred             HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+.... .........++.++++.++|....++++.+||||||||++|+
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  146 (211)
T cd03225          96 EVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIA  146 (211)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence            22221100 011122345678899999998888999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.90  E-value=3.1e-24  Score=175.41  Aligned_cols=119  Identities=16%  Similarity=0.095  Sum_probs=91.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~-------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..   .+++.++|++|++.       
T Consensus        18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   97 (216)
T TIGR00960        18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTV   97 (216)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccH
Confidence            455566654 69999999999999999999999999998 9999999987543322   35678999999864       


Q ss_pred             -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++... ........+++.++++.++|....++++.+||||||||++|+
T Consensus        98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  150 (216)
T TIGR00960        98 YDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIA  150 (216)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence             233322110 111123456788999999998888999999999999999874

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.90  E-value=5.1e-24  Score=190.51  Aligned_cols=120  Identities=22%  Similarity=0.261  Sum_probs=99.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      ...++++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++......++++.++|++|++.        +
T Consensus        17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e   96 (402)
T PRK09536         17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQ   96 (402)
T ss_pred             EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHH
Confidence            3556667764 59999999999999999999999999998 999999999977777778889999999865        4


Q ss_pred             HHHhcCCCCC---C--hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHA---A--IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~---~--~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++..++.   .  ...+.+++.++|+.++|....++++.+||||||||++|+
T Consensus        97 ~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA  151 (402)
T PRK09536         97 VVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA  151 (402)
T ss_pred             HHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            5555543321   1  134567889999999999889999999999999999874

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.90  E-value=5.6e-24  Score=173.95  Aligned_cols=119  Identities=19%  Similarity=0.116  Sum_probs=90.7

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH----HhhhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~----~~~~iG~v~Q~~~------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......    +++.++|++|++.      
T Consensus        19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   98 (218)
T cd03255          19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLT   98 (218)
T ss_pred             EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCc
Confidence            455666654 59999999999999999999999999998 99999999886544322    3457999999864      


Q ss_pred             --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.++... ........+++.++++.++|....++.+.+||||||||++|+
T Consensus        99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  152 (218)
T cd03255          99 ALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA  152 (218)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHH
Confidence              333332111 111122345788899999998888999999999999999874

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.90  E-value=5.7e-24  Score=183.01  Aligned_cols=118  Identities=21%  Similarity=0.174  Sum_probs=92.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ...++++.+||+||++.        ++
T Consensus         8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~   86 (302)
T TIGR01188         8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGREN   86 (302)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence            456666664 69999999999999999999999999998 999999998854 33456678999999864        33


Q ss_pred             HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+... ......+..+++.++|+.++|....++++.+||||||||++|+
T Consensus        87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  136 (302)
T TIGR01188        87 LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIA  136 (302)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHH
Confidence            333211 1112223345788999999999888999999999999999874

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=5.9e-24  Score=187.08  Aligned_cols=117  Identities=16%  Similarity=0.072  Sum_probs=94.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.....  .+++|+||||++.        +|
T Consensus        21 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~~~lfp~~tv~eN   98 (351)
T PRK11432         21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICMVFQSYALFPHMSLGEN   98 (351)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCCHHHH
Confidence            445566655 58999999999999999999999999998 999999999865443  3468999999875        55


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++... .....+..+++.++++.++|....++++.+|||||||||+|+
T Consensus        99 i~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLA  148 (351)
T PRK11432         99 VGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALA  148 (351)
T ss_pred             HHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            5554321 122234456889999999999889999999999999999974

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.90  E-value=5.9e-24  Score=174.40  Aligned_cols=118  Identities=20%  Similarity=0.175  Sum_probs=90.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ..++++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ...++++.++|+||++.        ++
T Consensus        15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~~   93 (220)
T cd03265          15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGWEN   93 (220)
T ss_pred             eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEEecCCccccccCcHHHH
Confidence            455666664 59999999999999999999999999998 999999988754 23455678999999864        22


Q ss_pred             HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+... ......+...++.++|+.++|....++++.+||||||||++|+
T Consensus        94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la  143 (220)
T cd03265          94 LYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIA  143 (220)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHH
Confidence            322211 0111223455788999999998888999999999999999874

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.90  E-value=5.4e-24  Score=187.42  Aligned_cols=117  Identities=15%  Similarity=0.081  Sum_probs=94.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....+  .++.++||||++.        +|
T Consensus        19 ~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~ig~v~Q~~~lfp~~tv~eN   96 (353)
T TIGR03265        19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDYGIVFQSYALFPNLTVADN   96 (353)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCcHHHH
Confidence            455666665 59999999999999999999999999998 999999999865443  3568999999975        55


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++... .....+...++.++++.++|....++++.+|||||||||+|+
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLA  146 (353)
T TIGR03265        97 IAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALA  146 (353)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHH
Confidence            5554321 122234456889999999999999999999999999999974

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=6.1e-24  Score=173.05  Aligned_cols=110  Identities=23%  Similarity=0.233  Sum_probs=99.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAA  150 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~~  150 (189)
                      +|.+++|||||||||||||.++++|++.+ |+|+++|.++...+..++.+++..+-|+..        +.+.||++|+-.
T Consensus        26 ~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSq  105 (252)
T COG4604          26 KGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ  105 (252)
T ss_pred             CCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccC
Confidence            68999999999999999999999999998 999999999999999999999999999865        667788887653


Q ss_pred             h---HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          151 I---REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       151 ~---~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      -   .+|...+.++++.|.|++..++++.+||||||||+-++
T Consensus       106 GRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIA  147 (252)
T COG4604         106 GRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIA  147 (252)
T ss_pred             CCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhh
Confidence            2   57888999999999999999999999999999998653

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=9.2e-24  Score=179.90  Aligned_cols=119  Identities=13%  Similarity=0.034  Sum_probs=94.7

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~  139 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++.         +
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e  101 (279)
T PRK13650         22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVED  101 (279)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHH
Confidence            455666663 69999999999999999999999999998 999999999865556667789999999873         3


Q ss_pred             HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++... .....+..+++.++|+.++|....++.+.+||||||||++|+
T Consensus       102 ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lA  152 (279)
T PRK13650        102 DVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIA  152 (279)
T ss_pred             HHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence            33333211 122233456788999999999889999999999999999974

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.1e-23  Score=179.00  Aligned_cols=119  Identities=13%  Similarity=0.087  Sum_probs=93.8

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R  139 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~  139 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++.         +
T Consensus        20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e   99 (274)
T PRK13647         20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWD   99 (274)
T ss_pred             eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHH
Confidence            55566666 369999999999999999999999999998 999999998866556666778999999873         3


Q ss_pred             HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++... .........++.++|+.++|....++++.+||||||||++|+
T Consensus       100 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~la  150 (274)
T PRK13647        100 DVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIA  150 (274)
T ss_pred             HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHH
Confidence            33332111 111123345688899999998889999999999999999874

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.90  E-value=9.7e-24  Score=172.15  Aligned_cols=117  Identities=15%  Similarity=0.057  Sum_probs=89.7

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.....  .++.++|+||++.        ++
T Consensus        15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~~~   92 (213)
T cd03259          15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMVFQDYALFPHLTVAEN   92 (213)
T ss_pred             eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEEcCchhhccCCcHHHH
Confidence            455666664 59999999999999999999999999998 999999998854332  3467999999865        23


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+.... ........+++.++++.++|....++++.+||||||||++|+
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la  142 (213)
T cd03259          93 IAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALA  142 (213)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence            3222111 111123345678899999998888999999999999999874

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.90  E-value=1.4e-23  Score=171.13  Aligned_cols=119  Identities=18%  Similarity=0.137  Sum_probs=90.9

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH-------
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~-------  138 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.+++.++......   .+++.++|++|++.       
T Consensus        17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   96 (214)
T TIGR02673        17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTV   96 (214)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcH
Confidence            45566666 469999999999999999999999999998 9999999988654332   34568999999865       


Q ss_pred             -HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.+... ..........++.++++.++|....++.+.+||||||||++|+
T Consensus        97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  149 (214)
T TIGR02673        97 YENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIA  149 (214)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence             22222211 0111222345788899999998888999999999999999874

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.90  E-value=1.2e-23  Score=173.93  Aligned_cols=119  Identities=22%  Similarity=0.143  Sum_probs=91.2

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~  139 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++ ++.++|+||++.        +
T Consensus        15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~   94 (236)
T cd03219          15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLE   94 (236)
T ss_pred             EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHH
Confidence            44555665 369999999999999999999999999998 999999998865554443 356999999864        3


Q ss_pred             HHHhcCCCCC-----------ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHA-----------AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~-----------~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+......           ...+..+++.++++.++|....++++.+||||||||++|+
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  155 (236)
T cd03219          95 NVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIA  155 (236)
T ss_pred             HHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHH
Confidence            3333221110           1123345688899999998888999999999999999874

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.89  E-value=1e-23  Score=185.61  Aligned_cols=117  Identities=15%  Similarity=0.110  Sum_probs=94.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.....  .++.++||||++.        ++
T Consensus        17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q~~~l~p~~tv~en   94 (353)
T PRK10851         17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQHYALFRHMTVFDN   94 (353)
T ss_pred             EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEecCcccCCCCcHHHH
Confidence            456666664 69999999999999999999999999998 999999999865432  3468999999865        55


Q ss_pred             HHhcCCC-----CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-----HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-----~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++...     .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalA  148 (353)
T PRK10851         95 IAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALA  148 (353)
T ss_pred             HHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence            5554321     122234456889999999999889999999999999999974

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.89  E-value=1e-23  Score=182.12  Aligned_cols=119  Identities=19%  Similarity=0.165  Sum_probs=93.9

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      .+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.|+|.++... ..+.++.|||+||++.        +
T Consensus        21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~-~~~~~~~ig~v~q~~~~~~~~tv~e   99 (306)
T PRK13537         21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR-ARHARQRVGVVPQFDNLDPDFTVRE   99 (306)
T ss_pred             EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc-hHHHHhcEEEEeccCcCCCCCcHHH
Confidence            3556677765 59999999999999999999999999998 9999999998643 3456788999999865        3


Q ss_pred             HHHh-cCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~-g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+ +........+...++.++++.++|....++++.+||+|||||++|+
T Consensus       100 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  150 (306)
T PRK13537        100 NLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLA  150 (306)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHH
Confidence            4332 2111122233456778999999999889999999999999999874

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.89  E-value=2.2e-23  Score=172.64  Aligned_cols=119  Identities=20%  Similarity=0.187  Sum_probs=91.2

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc---hHHHhhhceeccchhH-------
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~---~~~~~~~iG~v~Q~~~-------  138 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++....   ...+++.++|++|++.       
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   95 (241)
T cd03256          16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSV   95 (241)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcH
Confidence            45555665 369999999999999999999999999998 99999999886544   2345678999999864       


Q ss_pred             -HHHHhcCCCC---------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~---------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.+.....         .......+++.++++.++|....++.+.+||||||||++|+
T Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  156 (241)
T cd03256          96 LENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIA  156 (241)
T ss_pred             HHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHH
Confidence             3333322110         00123345678899999998888999999999999999874

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.89  E-value=1.4e-23  Score=170.42  Aligned_cols=113  Identities=15%  Similarity=0.099  Sum_probs=88.0

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R  139 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~  139 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++..   ..+++.++|++|++.         +
T Consensus        15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~tv~e   91 (205)
T cd03226          15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVRE   91 (205)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhhhhccHHH
Confidence            45566665 369999999999999999999999999998 999999988742   345668999999963         2


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+....   ......++.++++.++|....++++.+||+|||||++|+
T Consensus        92 ~l~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  138 (205)
T cd03226          92 ELLLGLKE---LDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIA  138 (205)
T ss_pred             HHhhhhhh---cCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHH
Confidence            22221100   011235688999999999888999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.89  E-value=1.2e-23  Score=186.52  Aligned_cols=117  Identities=15%  Similarity=0.072  Sum_probs=93.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....+.  ++.++||||++.        +|
T Consensus        29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~vfQ~~~lfp~ltv~eN  106 (375)
T PRK09452         29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFEN  106 (375)
T ss_pred             EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEEEecCcccCCCCCHHHH
Confidence            344555554 59999999999999999999999999998 9999999998654433  468999999975        55


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++... .....+..+++.++++.++|....++++.+|||||||||+|+
T Consensus       107 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLA  156 (375)
T PRK09452        107 VAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIA  156 (375)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence            5554321 122233356788999999999899999999999999999974

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.6e-23  Score=173.41  Aligned_cols=119  Identities=16%  Similarity=0.087  Sum_probs=91.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---Hh-hhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~-~~iG~v~Q~~~------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+   ++ +.++|+||++.      
T Consensus        24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t  103 (233)
T PRK11629         24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFT  103 (233)
T ss_pred             eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCC
Confidence            455666664 59999999999999999999999999998 99999999886554432   22 57999999864      


Q ss_pred             --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.+... ......+..+++.++|+.++|....++.+.+||||||||++|+
T Consensus       104 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la  157 (233)
T PRK11629        104 ALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIA  157 (233)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence              33333211 1112223446788999999998888999999999999999874

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.89  E-value=1.4e-23  Score=171.88  Aligned_cols=119  Identities=15%  Similarity=0.129  Sum_probs=90.9

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---Hh-hhceeccchhH------
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~-~~iG~v~Q~~~------  138 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+   ++ +.++|++|++.      
T Consensus        20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   99 (221)
T TIGR02211        20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFT   99 (221)
T ss_pred             eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCc
Confidence            45566666 469999999999999999999999999998 99999999886544333   23 57999999864      


Q ss_pred             --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.+... ......+..+++.++++.++|....++.+.+||||||||++|+
T Consensus       100 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  153 (221)
T TIGR02211       100 ALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIA  153 (221)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence              33332211 1112223455678899999998888999999999999999874

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.89  E-value=2.8e-23  Score=172.38  Aligned_cols=119  Identities=23%  Similarity=0.203  Sum_probs=91.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch---HHHhhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~---~~~~~~iG~v~Q~~~-------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.....   ..+++.++|+||++.       
T Consensus        17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   96 (243)
T TIGR02315        17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTV   96 (243)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccH
Confidence            455666663 59999999999999999999999999998 999999988754332   234668999999864       


Q ss_pred             -HHHHhcCCCC---------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~---------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++....         .......+++.++++.++|....++.+.+||||||||++|+
T Consensus        97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  157 (243)
T TIGR02315        97 LENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA  157 (243)
T ss_pred             HHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence             3333322110         00123456788899999998888999999999999999974

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.7e-23  Score=178.94  Aligned_cols=120  Identities=17%  Similarity=0.109  Sum_probs=92.3

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc--hHHHhhhceeccchhH-------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI-------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~~-------  138 (189)
                      .+..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++....  ...+++.||||||++.       
T Consensus        21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t  100 (287)
T PRK13637         21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET  100 (287)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence            3556666663 59999999999999999999999999998 99999999886432  2456779999999863       


Q ss_pred             --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc--hhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCP-HAAIREDISINLGPLEELSNL--FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~--~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.++... .....+..+++.++|+.++|.  ...++++.+||||||||++|+
T Consensus       101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iA  156 (287)
T PRK13637        101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIA  156 (287)
T ss_pred             HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHH
Confidence              233322111 122233445788999999997  568999999999999999874

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.89  E-value=1.8e-23  Score=170.30  Aligned_cols=119  Identities=18%  Similarity=0.101  Sum_probs=91.1

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch---HHHhhhceeccchhH-------
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~---~~~~~~iG~v~Q~~~-------  138 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++.....   ..+++.++|++|++.       
T Consensus        16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~   95 (214)
T cd03292          16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNV   95 (214)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcH
Confidence            45566666 369999999999999999999999999998 999999998865433   235678999999874       


Q ss_pred             -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.+.... .....+..+++.++++.++|....++++.+||+|||||++|+
T Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  148 (214)
T cd03292          96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIA  148 (214)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHH
Confidence             233222110 111223345678899999998888999999999999999874

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.89  E-value=2.1e-23  Score=171.27  Aligned_cols=119  Identities=17%  Similarity=0.143  Sum_probs=90.7

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~-------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......   .+++.++|++|++.       
T Consensus        17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   96 (222)
T PRK10908         17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTV   96 (222)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccH
Confidence            455666664 69999999999999999999999999998 9999999988654332   24678999999864       


Q ss_pred             -HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.+... ......+...++.++|+.+++....++.+.+||+|||||++|+
T Consensus        97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  149 (222)
T PRK10908         97 YDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIA  149 (222)
T ss_pred             HHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHH
Confidence             23332211 1111223345677899999998888999999999999999874

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=7.2e-24  Score=169.08  Aligned_cols=127  Identities=20%  Similarity=0.217  Sum_probs=103.4

Q ss_pred             CCCCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHH
Q 029723           63 GYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA  140 (189)
Q Consensus        63 g~~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~  140 (189)
                      ||.....+..|+++|.-. ||+++|+||+|||||||||+++.++.|+ |.++|.|+++.+..+.++|+.|.|+.|.|..+
T Consensus        10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf   89 (223)
T COG4619          10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF   89 (223)
T ss_pred             HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence            455555667788888765 9999999999999999999999999999 99999999999999999999999999998621


Q ss_pred             HHhc----CCCCC--ChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          141 VETG----GCPHA--AIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g----~~~~~--~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      -.+-    .+++.  ..+.|...+..+|+++++.. .+++.+.+|||||+||+++|
T Consensus        90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAli  145 (223)
T COG4619          90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALI  145 (223)
T ss_pred             ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHH
Confidence            1100    01111  01236778889999999975 68999999999999999985

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.8e-23  Score=183.27  Aligned_cols=119  Identities=17%  Similarity=0.089  Sum_probs=92.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~-------  138 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+   +++.|+|+||++.       
T Consensus        20 il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv   99 (343)
T PRK11153         20 ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTV   99 (343)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcH
Confidence            455666654 59999999999999999999999999998 99999999986554433   3568999999864       


Q ss_pred             -HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.+... ......+..+++.++|+.++|....++++.+||||||||++|+
T Consensus       100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lA  152 (343)
T PRK11153        100 FDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIA  152 (343)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence             34433211 1122223446788999999999888999999999999999874

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.89  E-value=3e-23  Score=168.90  Aligned_cols=119  Identities=18%  Similarity=0.159  Sum_probs=90.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--CchHHHhhhceeccchhH--------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..  .....+++.++|++|++.        
T Consensus        15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~   94 (213)
T cd03262          15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVL   94 (213)
T ss_pred             eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHH
Confidence            445566654 69999999999999999999999999998 999999988742  123345678999999864        


Q ss_pred             HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.+...  ......+..+++.++++.+++....++++.+||+||+||++|+
T Consensus        95 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  147 (213)
T cd03262          95 ENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIA  147 (213)
T ss_pred             HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHH
Confidence            33332211  1111223445678899999998888999999999999999874

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.89  E-value=2.7e-23  Score=171.61  Aligned_cols=120  Identities=19%  Similarity=0.112  Sum_probs=92.1

Q ss_pred             CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH------
Q 029723           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~------  138 (189)
                      ....+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++......   .+++.++|++|++.      
T Consensus        19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   98 (233)
T cd03258          19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT   98 (233)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence            355666666 459999999999999999999999999998 9999999988654433   23568999999864      


Q ss_pred             --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.+... ...........+.++|+.++|....++++.+||+|||||++|+
T Consensus        99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  152 (233)
T cd03258          99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIA  152 (233)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHH
Confidence              33332211 1111222345678899999998888999999999999999874

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=3.2e-23  Score=176.71  Aligned_cols=119  Identities=15%  Similarity=0.043  Sum_probs=94.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~  139 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.|+|+||++.         +
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e  101 (279)
T PRK13635         22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQD  101 (279)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHH
Confidence            455666663 59999999999999999999999999998 999999999876555566778999999873         3


Q ss_pred             HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++... .....+...++.++|+.++|....++++.+||+|||||++|+
T Consensus       102 nl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la  152 (279)
T PRK13635        102 DVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIA  152 (279)
T ss_pred             HHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHH
Confidence            33332111 112233346688999999999889999999999999999874

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.9e-23  Score=185.41  Aligned_cols=117  Identities=14%  Similarity=0.046  Sum_probs=94.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....+  .++.+||+||++.        +|
T Consensus        34 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~vfQ~~~lfp~ltv~eN  111 (377)
T PRK11607         34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINMMFQSYALFPHMTVEQN  111 (377)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCCccCCCCCHHHH
Confidence            455666664 59999999999999999999999999998 999999998865433  4568999999975        55


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++... .....+..+++.++++.++|....++++.+|||||||||+|+
T Consensus       112 i~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLA  161 (377)
T PRK11607        112 IAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALA  161 (377)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            6554321 122233456788999999999899999999999999999974

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.89  E-value=1.7e-23  Score=171.07  Aligned_cols=119  Identities=18%  Similarity=0.058  Sum_probs=92.1

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      ....+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ...++++.++|+||++.        +
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e   97 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARE   97 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcccCcCCCHHH
Confidence            3555666663 59999999999999999999999999998 999999998853 34456678999999864        2


Q ss_pred             HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+... ......+...++.++++.++|....++.+.+||||||||++|+
T Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  148 (218)
T cd03266          98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIA  148 (218)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHH
Confidence            3322111 1111223356788899999998888999999999999999874

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=3.1e-23  Score=170.37  Aligned_cols=118  Identities=21%  Similarity=0.201  Sum_probs=101.7

Q ss_pred             cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHH
Q 029723           72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV  141 (189)
Q Consensus        72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i  141 (189)
                      .+.++|.- +||+++|+||||||||||||.|+|.+.|+ |++.++|.++....+.++.+..++++|+..        +.+
T Consensus        17 l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV   96 (259)
T COG4559          17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVV   96 (259)
T ss_pred             ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHH
Confidence            34555554 48999999999999999999999999999 999999999998899999999999999864        678


Q ss_pred             HhcCCCCCCh---HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAI---REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~---~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .+|..++-.-   .++...+..+|+..++..+..+...+|||||||||.|+
T Consensus        97 ~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlA  147 (259)
T COG4559          97 QMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLA  147 (259)
T ss_pred             HhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHH
Confidence            8888776432   35666788999999999999999999999999999874

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.4e-23  Score=184.22  Aligned_cols=117  Identities=16%  Similarity=-0.014  Sum_probs=92.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.....  .++.|+||||++.        ++
T Consensus        18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~v~Q~~~l~~~~tv~en   95 (369)
T PRK11000         18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGMVFQSYALYPHLSVAEN   95 (369)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEEEeCCcccCCCCCHHHH
Confidence            445566654 59999999999999999999999999998 999999998864433  2467999999864        44


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus        96 i~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLA  145 (369)
T PRK11000         96 MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG  145 (369)
T ss_pred             HHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence            5443221 122233456788999999999889999999999999999974

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=2.6e-23  Score=179.07  Aligned_cols=121  Identities=18%  Similarity=0.104  Sum_probs=102.0

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH----
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI----  138 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~----  138 (189)
                      ..-.++.+|.-. |||+.|+|-+|||||||+|+|.+|+.|+ |+|.++|.|+...+.+++    ++++++|||...    
T Consensus        41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh  120 (386)
T COG4175          41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH  120 (386)
T ss_pred             EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc
Confidence            344567777765 8999999999999999999999999999 999999999998887765    348999999875    


Q ss_pred             ----HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +|+.+|.. ......+..+++.++|+.+||..+.+++|.+|||||||||.++
T Consensus       121 rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLA  176 (386)
T COG4175         121 RTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLA  176 (386)
T ss_pred             hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHH
Confidence                56666643 2334456678899999999999999999999999999999763

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.89  E-value=3.9e-23  Score=171.91  Aligned_cols=119  Identities=16%  Similarity=0.066  Sum_probs=91.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++.        ++
T Consensus        16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   95 (242)
T cd03295          16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEEN   95 (242)
T ss_pred             EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHH
Confidence            444555554 69999999999999999999999999998 999999998865555556678999999864        33


Q ss_pred             HHhcCC-CCCChHHHHHHHHHHHhhcCCch--hhccccccCChHHHHhhhcC
Q 029723          141 VETGGC-PHAAIREDISINLGPLEELSNLF--KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~--~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+... ..........++.++++.++|..  ..++++.+||+|||||++|+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~la  147 (242)
T cd03295          96 IALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVA  147 (242)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHH
Confidence            333211 11112233456889999999985  78999999999999999874

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=2.1e-23  Score=172.73  Aligned_cols=121  Identities=17%  Similarity=0.122  Sum_probs=93.0

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH-------
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------  138 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~-------  138 (189)
                      ..+...++|.- +|||++|+|+||+||||||++|+|++++. |+|.+.|.|++...+.++ ++.|+||||.+.       
T Consensus        16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTV   95 (237)
T COG0410          16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTV   95 (237)
T ss_pred             eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcH
Confidence            44455566655 59999999999999999999999999997 999999999998877765 558999999875       


Q ss_pred             -HHHHhcCCCCCChHHHHHHHHHHHhhcC-CchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~~~~~~d~~~v~~~L~~lg-L~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +|+.++.............++++++.|- |.+..+++..+|||||||.+||+
T Consensus        96 eENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia  148 (237)
T COG0410          96 EENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA  148 (237)
T ss_pred             HHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence             6666654332211111222566666664 56788999999999999999873

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=3.7e-23  Score=175.27  Aligned_cols=120  Identities=15%  Similarity=0.072  Sum_probs=93.4

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------  138 (189)
                      ....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.++|++|++.         
T Consensus        23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~  102 (271)
T PRK13632         23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVE  102 (271)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHH
Confidence            3556666664 69999999999999999999999999998 999999998865555566778999999873         


Q ss_pred             HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.++... .....+...++.++++.++|....++.+.+||+|||||++|+
T Consensus       103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  154 (271)
T PRK13632        103 DDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIA  154 (271)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHH
Confidence            233222111 112222345678899999999889999999999999999874

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=4e-23  Score=175.55  Aligned_cols=119  Identities=18%  Similarity=0.040  Sum_probs=92.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc-hHHHhhhceeccchhH---------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERI---------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~-~~~~~~~iG~v~Q~~~---------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ...+++.++|++|++.         
T Consensus        17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~   96 (274)
T PRK13644         17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVE   96 (274)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHH
Confidence            556666663 59999999999999999999999999998 99999999885443 3456678999999864         


Q ss_pred             HHHHhcCCCC-CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~-~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.+..... ....+..+++.++++.++|....++++.+||+|||||++|+
T Consensus        97 enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la  148 (274)
T PRK13644         97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALA  148 (274)
T ss_pred             HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHH
Confidence            2222221111 11223345688899999999888999999999999999874

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.89  E-value=2.7e-23  Score=182.16  Aligned_cols=119  Identities=17%  Similarity=0.156  Sum_probs=93.7

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      .+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ..+.++.+||+||++.        +
T Consensus        55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig~v~q~~~~~~~~tv~e  133 (340)
T PRK13536         55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR-ARLARARIGVVPQFDNLDLEFTVRE  133 (340)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc-hHHHhccEEEEeCCccCCCCCcHHH
Confidence            3566777764 59999999999999999999999999998 9999999998543 3456778999999864        3


Q ss_pred             HHHh-cCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~-g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+ +........+...++.++++.++|....++++.+||+|||||++|+
T Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA  184 (340)
T PRK13536        134 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLA  184 (340)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHH
Confidence            3432 2111122233455677899999999889999999999999999874

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=3.4e-23  Score=177.42  Aligned_cols=119  Identities=15%  Similarity=0.101  Sum_probs=91.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC----CchHHHhhhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----KEDGEFLMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~----~~~~~~~~~iG~v~Q~~~------  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++..    ....++++.|+|+||++.      
T Consensus        22 ~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~  101 (290)
T PRK13634         22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEE  101 (290)
T ss_pred             ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhh
Confidence            555666655 49999999999999999999999999998 999999998852    123456678999999863      


Q ss_pred             ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++... .....+..+++.++|+.++|. ...++++.+||+|||||++|+
T Consensus       102 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA  157 (290)
T PRK13634        102 TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIA  157 (290)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence               333333211 122233446788999999996 567999999999999999874

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.89  E-value=2.6e-23  Score=170.23  Aligned_cols=118  Identities=19%  Similarity=0.032  Sum_probs=90.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ..++++.++|++|++.        ++
T Consensus        17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~~~   95 (220)
T cd03263          17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQFDALFDELTVREH   95 (220)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCcCCccccCCHHHH
Confidence            455666653 59999999999999999999999999998 9999999987543 3456678999999864        23


Q ss_pred             HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+... ......+..+++.++++.++|....++++.+||+|||||++|+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  145 (220)
T cd03263          96 LRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLA  145 (220)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHH
Confidence            322111 1111122345678899999998888999999999999999874

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.89  E-value=3.7e-23  Score=168.69  Aligned_cols=114  Identities=24%  Similarity=0.241  Sum_probs=88.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.     .+++.++|++|++.          
T Consensus        14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~   88 (213)
T cd03235          14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPISVR   88 (213)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEeccccccccCCCCcHH
Confidence            455566664 69999999999999999999999999998 99999998763     35568999999853          


Q ss_pred             HHHHhcCCCCC-----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~-----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.+......     ......+++.++++.+++....++++.+||||||||++|+
T Consensus        89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  144 (213)
T cd03235          89 DVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLA  144 (213)
T ss_pred             HHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHH
Confidence            23333221110     1123446788899999998888999999999999999874

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.89  E-value=2.8e-23  Score=181.43  Aligned_cols=121  Identities=14%  Similarity=0.122  Sum_probs=93.3

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH-----
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI-----  138 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~-----  138 (189)
                      ..+..+++|.- +||+++|+|+||||||||+++|+|+++|+ |+|.++|.++......   .+++.|+||||++.     
T Consensus        34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p  113 (331)
T PRK15079         34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP  113 (331)
T ss_pred             eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence            34566777774 59999999999999999999999999998 9999999998765443   34568999999973     


Q ss_pred             -----HHHHhcCCC---CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 -----RAVETGGCP---HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -----~~i~~g~~~---~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                           +++.+....   .+...+..+++.++|+.++|. ...++++.+|||||+|||+|+
T Consensus       114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iA  173 (331)
T PRK15079        114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIA  173 (331)
T ss_pred             CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHH
Confidence                 233222111   122233456788999999995 467999999999999999974

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=4.2e-23  Score=176.40  Aligned_cols=119  Identities=18%  Similarity=0.120  Sum_probs=91.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC----chHHHhhhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~----~~~~~~~~iG~v~Q~~~------  138 (189)
                      +..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...    ...++++.||||||++.      
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~  101 (286)
T PRK13646         22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED  101 (286)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchh
Confidence            556666663 59999999999999999999999999998 9999999988532    22456778999999863      


Q ss_pred             ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++... .....+...++.++|+.++|. ...++.+.+||||||||++|+
T Consensus       102 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la  157 (286)
T PRK13646        102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV  157 (286)
T ss_pred             hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence               233332111 122233456788999999997 578899999999999999874

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.89  E-value=4.1e-23  Score=170.05  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=91.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---H-hhhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~-~~~iG~v~Q~~~------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+   . ++.++|++|++.      
T Consensus        25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~t  104 (228)
T PRK10584         25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLN  104 (228)
T ss_pred             EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcC
Confidence            456666664 69999999999999999999999999998 99999999886554432   2 357999999864      


Q ss_pred             --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.+... ......+..+++.++|+.++|....++++.+||+|||||++|+
T Consensus       105 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la  158 (228)
T PRK10584        105 ALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALA  158 (228)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH
Confidence              33332211 1111223456788999999998888999999999999999874

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=3.4e-24  Score=174.70  Aligned_cols=121  Identities=18%  Similarity=0.121  Sum_probs=97.0

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhh-hceeccchhH-------
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI-------  138 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~-~iG~v~Q~~~-------  138 (189)
                      ....++++|.- +||++||+|||||||||.+.+++|+++|+ |+|.+++.|++.++...+.| .|||+||++.       
T Consensus        17 r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV   96 (243)
T COG1137          17 RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTV   96 (243)
T ss_pred             eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcH
Confidence            34556666665 49999999999999999999999999999 99999999999888776654 8999999987       


Q ss_pred             -HHHHhcCCCCC-C--hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCPHA-A--IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~~-~--~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +|+..-..... .  ..+...+++++|+.|.|....+.+...||||||+|++|+
T Consensus        97 ~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIA  151 (243)
T COG1137          97 EDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA  151 (243)
T ss_pred             HHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHH
Confidence             33332221111 1  123445678999999999999999999999999999874

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.88  E-value=5e-23  Score=169.77  Aligned_cols=119  Identities=17%  Similarity=0.138  Sum_probs=90.7

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~  139 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++ ++.++|++|++.        +
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   94 (232)
T cd03218          15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEE   94 (232)
T ss_pred             eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHH
Confidence            45566665 369999999999999999999999999998 999999998765444443 357999999864        3


Q ss_pred             HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+... ..........++.++++.+++....++.+.+||+|||||++|+
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  145 (232)
T cd03218          95 NILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIA  145 (232)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence            3333211 1111122345678899999998888999999999999999874

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4.4e-23  Score=176.37  Aligned_cols=119  Identities=16%  Similarity=0.120  Sum_probs=90.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC----chHHHhhhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~----~~~~~~~~iG~v~Q~~~------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...    ...++++.++|+||++.      
T Consensus        22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~  101 (287)
T PRK13641         22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN  101 (287)
T ss_pred             ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccc
Confidence            455555554 59999999999999999999999999998 9999999987532    23445668999999863      


Q ss_pred             ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++... .....+...++.++|+.++|. ...++++.+||||||||++|+
T Consensus       102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~la  157 (287)
T PRK13641        102 TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA  157 (287)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHH
Confidence               233322111 112223445688999999997 578999999999999999974

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.88  E-value=2.8e-23  Score=178.72  Aligned_cols=118  Identities=17%  Similarity=0.135  Sum_probs=92.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      +.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ...++++.+||+||++.        ++
T Consensus        17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~~l~~~~tv~e~   95 (301)
T TIGR03522        17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYVREY   95 (301)
T ss_pred             EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCCCCCCCCcHHHH
Confidence            455666665 58999999999999999999999999999 999999998854 34456778999999865        33


Q ss_pred             HHhcC-CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~-~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+.. .......+..+++.++|+.++|....++++.+||+|||||++|+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la  145 (301)
T TIGR03522        96 LQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLA  145 (301)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHH
Confidence            33211 11112222345688899999999889999999999999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.88  E-value=4.2e-23  Score=177.70  Aligned_cols=118  Identities=18%  Similarity=0.180  Sum_probs=91.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ..++++.++|++|++.        ++
T Consensus        19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~e~   97 (303)
T TIGR01288        19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGVVPQFDNLDPEFTVREN   97 (303)
T ss_pred             EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEEEeccccCCcCCcHHHH
Confidence            456666664 59999999999999999999999999998 9999999987532 3455678999999864        33


Q ss_pred             HHh-cCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~-g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+ .........+...++.++++.++|....++++.+||||||||++|+
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la  147 (303)
T TIGR01288        98 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLA  147 (303)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHH
Confidence            322 1111122222345677899999999888999999999999999874

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.88  E-value=4e-23  Score=168.31  Aligned_cols=117  Identities=15%  Similarity=-0.002  Sum_probs=89.6

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++.....  .++.++|++|++.        ++
T Consensus        15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~~~   92 (213)
T cd03301          15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAMVFQNYALYPHMTVYDN   92 (213)
T ss_pred             eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEEEecChhhccCCCHHHH
Confidence            45566665 469999999999999999999999999998 999999998754332  2357999999865        33


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+.... .....+..+++.++++.+++....++++.+||+|||||++|+
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la  142 (213)
T cd03301          93 IAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALG  142 (213)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHH
Confidence            3332111 111233345678899999998888999999999999999874

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.88  E-value=3.3e-23  Score=168.67  Aligned_cols=115  Identities=23%  Similarity=0.149  Sum_probs=88.5

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++..    ..++.++|++|++.        ++
T Consensus        15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~~q~~~~~~~~tv~e~   90 (210)
T cd03269          15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYLPEERGLYPKMKVIDQ   90 (210)
T ss_pred             EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEeccCCcCCcCCcHHHH
Confidence            44556665 469999999999999999999999999998 999999987732    34568999999864        33


Q ss_pred             HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+... ......+..+.+.++++.+++....++++.+||+|||||++|+
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  140 (210)
T cd03269          91 LVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFI  140 (210)
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHH
Confidence            332211 1111123345688899999998888999999999999999874

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=5.6e-23  Score=174.80  Aligned_cols=119  Identities=17%  Similarity=0.118  Sum_probs=92.6

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R  139 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~  139 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...+...+++.++|+||++.         +
T Consensus        19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~   98 (277)
T PRK13652         19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQ   98 (277)
T ss_pred             eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHH
Confidence            45566666 369999999999999999999999999998 999999998865455566778999999863         2


Q ss_pred             HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+.... ........+++.++++.++|....++.+.+||+|||||++|+
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~la  149 (277)
T PRK13652         99 DIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIA  149 (277)
T ss_pred             HHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHH
Confidence            33222111 112222345678999999998888999999999999999874

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4e-23  Score=184.65  Aligned_cols=120  Identities=16%  Similarity=0.085  Sum_probs=94.1

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH-----
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI-----  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~-----  138 (189)
                      ....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++    ++.++|+||++.     
T Consensus        42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~  121 (400)
T PRK10070         42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM  121 (400)
T ss_pred             EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence            3566777764 59999999999999999999999999998 999999999876554432    347999999864     


Q ss_pred             ---HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++.. ......+..+++.++|+.++|....++++.+||||||||++|+
T Consensus       122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LA  176 (400)
T PRK10070        122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLA  176 (400)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHH
Confidence               44444321 1112233456788999999999889999999999999999874

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.88  E-value=6.2e-23  Score=172.75  Aligned_cols=119  Identities=22%  Similarity=0.240  Sum_probs=92.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++.        ++
T Consensus        17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   96 (258)
T PRK13548         17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEV   96 (258)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHH
Confidence            456666664 69999999999999999999999999998 999999988765555556678999999864        33


Q ss_pred             HHhcCCCC-CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~-~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+..... ........++.++|+.++|....++.+.+||||||||++|+
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la  146 (258)
T PRK13548         97 VAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLA  146 (258)
T ss_pred             HHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence            33322111 11123345678899999998888999999999999999874

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.88  E-value=8.5e-23  Score=171.01  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=91.8

Q ss_pred             cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH--------HHHH
Q 029723           72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVE  142 (189)
Q Consensus        72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~  142 (189)
                      ..+++|.- +|++++|+|+|||||||||++|+|++++.|+|.++|.++......++++.++|+||++.        +++.
T Consensus        12 l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~   91 (248)
T PRK03695         12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT   91 (248)
T ss_pred             ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHH
Confidence            44556553 59999999999999999999999998656999999998866555566678999999863        3444


Q ss_pred             hcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          143 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       143 ~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.........+..+++.++++.++|....++++.+||+|||||++|+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  138 (248)
T PRK03695         92 LHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLA  138 (248)
T ss_pred             hcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence            43211111223356788999999998888999999999999999874

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.88  E-value=5.4e-23  Score=166.60  Aligned_cols=119  Identities=15%  Similarity=0.087  Sum_probs=90.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HHHhhhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~~~~~iG~v~Q~~~------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.....    ..+++.++|++|++.      
T Consensus        13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   92 (206)
T TIGR03608        13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENET   92 (206)
T ss_pred             EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCc
Confidence            455666663 69999999999999999999999999998 999999998643221    134568999999865      


Q ss_pred             --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.+.... .....+..+++.++++.++|....++++.+||+|||||++|+
T Consensus        93 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~la  146 (206)
T TIGR03608        93 VEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALA  146 (206)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHH
Confidence              233332111 111223456788899999998888999999999999999874

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=6.1e-23  Score=177.36  Aligned_cols=120  Identities=16%  Similarity=0.093  Sum_probs=91.6

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC------------------------Cch
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------------------------KED  123 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~------------------------~~~  123 (189)
                      .+..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.+++.++..                        ...
T Consensus        21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (305)
T PRK13651         21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI  100 (305)
T ss_pred             cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence            3556666664 59999999999999999999999999998 999999876521                        123


Q ss_pred             HHHhhhceeccchhH---------HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          124 GEFLMRNGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       124 ~~~~~~iG~v~Q~~~---------~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++++.||||||++.         +++.++... .....+..+++.++|+.++|. ...++++.+||||||||++|+
T Consensus       101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA  177 (305)
T PRK13651        101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA  177 (305)
T ss_pred             HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH
Confidence            456778999999863         334333211 122233456789999999996 678999999999999999974

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.88  E-value=4.8e-23  Score=167.82  Aligned_cols=117  Identities=19%  Similarity=0.159  Sum_probs=89.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ..++++|.- +| +++|+|||||||||||++|+|+++|+ |+|.++|.++.... .++++.++|++|++.        ++
T Consensus        15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~   92 (211)
T cd03264          15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREF   92 (211)
T ss_pred             EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCCcccccCCHHHH
Confidence            445555553 37 99999999999999999999999998 99999999886443 556778999999864        22


Q ss_pred             HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+... ......+..+++.++++.++|....++.+.+||+|||||++|+
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  142 (211)
T cd03264          93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA  142 (211)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHH
Confidence            222110 0111122345678899999998888999999999999999874

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.88  E-value=6.6e-23  Score=170.21  Aligned_cols=119  Identities=18%  Similarity=0.158  Sum_probs=91.2

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc--hHHHhhhceeccchhH--------
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI--------  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~~--------  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++....  ...+++.++|++|++.        
T Consensus        16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   95 (240)
T PRK09493         16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTAL   95 (240)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHH
Confidence            45566666 369999999999999999999999999998 99999999875422  2345678999999864        


Q ss_pred             HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.++..  ......+..+++.++++.++|....++.+.+||+|||||++|+
T Consensus        96 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la  148 (240)
T PRK09493         96 ENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIA  148 (240)
T ss_pred             HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHH
Confidence            33333211  1112233445678999999998888999999999999999874

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.88  E-value=4.4e-23  Score=169.22  Aligned_cols=115  Identities=16%  Similarity=0.085  Sum_probs=88.8

Q ss_pred             CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      ....+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++..     +++.++|++|++.        +
T Consensus        18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~tv~e   92 (220)
T cd03293          18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLD   92 (220)
T ss_pred             EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccccccCCCHHH
Confidence            345566666 469999999999999999999999999998 999999988742     3467999999864        3


Q ss_pred             HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+... .........+++.++++.++|....++++.+||||||||++|+
T Consensus        93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la  143 (220)
T cd03293          93 NVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALA  143 (220)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHH
Confidence            3332211 1111123346788899999998888999999999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.88  E-value=5.6e-23  Score=170.68  Aligned_cols=117  Identities=17%  Similarity=0.088  Sum_probs=89.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.....  .++.++|++|++.        ++
T Consensus        17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~e~   94 (239)
T cd03296          17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQHYALFRHMTVFDN   94 (239)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEecCCcccCCCCHHHH
Confidence            455566663 69999999999999999999999999998 999999988754332  2457999999864        33


Q ss_pred             HHhcCCCC-C----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPH-A----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~-~----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++.... .    ...+..+++.++++.++|....++++.+||+|||||++|+
T Consensus        95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  148 (239)
T cd03296          95 VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALA  148 (239)
T ss_pred             HhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence            33321111 0    1122345678899999998888999999999999999974

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.88  E-value=7.6e-23  Score=168.36  Aligned_cols=119  Identities=17%  Similarity=0.128  Sum_probs=89.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc-----cCC-ccEEEeecCCCCCc--hHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL-----RDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll-----~p~-G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|++     +|+ |+|.++|.++...+  ...+++.++|+||++.   
T Consensus        15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   94 (227)
T cd03260          15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP   94 (227)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhcc
Confidence            455666663 69999999999999999999999999     888 99999999875544  3455678999999964   


Q ss_pred             ----HHHHhcCCCC-CCh-HHHHHHHHHHHhhcCCchhhccc--cccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH-AAI-REDISINLGPLEELSNLFKADLL--LCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~-~~~-~~d~~~v~~~L~~lgL~~~~~~~--~~eLSGGqrq~~~~i  189 (189)
                          +++.+..... ... .+...++.++++.++|....++.  +.+||||||||++|+
T Consensus        95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la  153 (227)
T cd03260          95 GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA  153 (227)
T ss_pred             ccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence                2332221111 111 12345678899999998766666  599999999999874

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.88  E-value=6.3e-23  Score=173.81  Aligned_cols=119  Identities=15%  Similarity=0.058  Sum_probs=90.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+    ++.++|++|++.      
T Consensus        39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t  118 (269)
T cd03294          39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRT  118 (269)
T ss_pred             EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCc
Confidence            455666664 59999999999999999999999999998 999999998765443322    357999999864      


Q ss_pred             --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.+.... ........+++.++|+.++|....++++.+||+|||||++|+
T Consensus       119 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lA  172 (269)
T cd03294         119 VLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLA  172 (269)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHH
Confidence              333332111 111122345678899999998888999999999999999874

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=7.9e-23  Score=174.47  Aligned_cols=119  Identities=16%  Similarity=0.039  Sum_probs=92.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--CchHHHhhhceeccchhH--------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++..  ....++++.++|+||++.        
T Consensus        21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv  100 (283)
T PRK13636         21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASV  100 (283)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccH
Confidence            555666663 59999999999999999999999999998 999999998742  223456778999999873        


Q ss_pred             -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++... .....+...++.++++.++|....++++.+||+|||||++|+
T Consensus       101 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~la  153 (283)
T PRK13636        101 YQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA  153 (283)
T ss_pred             HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHH
Confidence             233322111 112233446788999999999889999999999999999874

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.88  E-value=1.1e-22  Score=165.59  Aligned_cols=114  Identities=19%  Similarity=0.145  Sum_probs=88.8

Q ss_pred             cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHh
Q 029723           74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET  143 (189)
Q Consensus        74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~  143 (189)
                      +++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++.....  .++.++|++|++.        +++.+
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~   93 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGL   93 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccccCCCCcHHHHHhc
Confidence            55555 369999999999999999999999999998 999999998854332  2467999999864        34433


Q ss_pred             cCCCCCC-hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          144 GGCPHAA-IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       144 g~~~~~~-~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +...... ......++.++++.++|....++++.+||+|||||++|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia  140 (211)
T cd03298          94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALA  140 (211)
T ss_pred             ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHH
Confidence            3221111 123455788999999998888999999999999999874

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.88  E-value=6.3e-23  Score=167.97  Aligned_cols=118  Identities=19%  Similarity=0.138  Sum_probs=88.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~  139 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++ ++.++|+||++.        +
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~   94 (222)
T cd03224          15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEE   94 (222)
T ss_pred             EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHH
Confidence            455666664 59999999999999999999999999998 999999998865554443 457999999864        3


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhc-CCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~l-gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+...... ..+...++.++++.+ ++....++++.+||+|||||++|+
T Consensus        95 ~l~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la  144 (222)
T cd03224          95 NLLLGAYARR-RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIA  144 (222)
T ss_pred             HHHHHhhhcC-chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHH
Confidence            3333211111 112344566778887 577778999999999999999874

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.88  E-value=4.2e-23  Score=167.82  Aligned_cols=114  Identities=17%  Similarity=0.040  Sum_probs=89.5

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...  .++++.++|+||++.        ++
T Consensus        15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~e~   92 (208)
T cd03268          15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAPGFYPNLTAREN   92 (208)
T ss_pred             eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCCccCccCcHHHH
Confidence            55566666 469999999999999999999999999998 9999999887543  345678999999864        23


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+..... .  .+..++.++|+.++|....++++.+||+|||||++|+
T Consensus        93 l~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  138 (208)
T cd03268          93 LRLLARLL-G--IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIA  138 (208)
T ss_pred             HHHHHHhc-C--CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHH
Confidence            32221110 0  1345678899999998888999999999999999874

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.88  E-value=9.5e-23  Score=172.11  Aligned_cols=119  Identities=20%  Similarity=0.175  Sum_probs=93.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++.        ++
T Consensus        22 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~  101 (265)
T PRK10253         22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQEL  101 (265)
T ss_pred             EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHH
Confidence            455666664 59999999999999999999999999998 999999998866555666678999999864        34


Q ss_pred             HHhcCCCC---C--ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPH---A--AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~---~--~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++....   .  .......++.++++.++|....++.+.+||+|||||++|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la  155 (265)
T PRK10253        102 VARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA  155 (265)
T ss_pred             HHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence            43332111   0  0122345678899999998888999999999999999874

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.88  E-value=6.2e-23  Score=181.28  Aligned_cols=117  Identities=17%  Similarity=0.099  Sum_probs=93.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-C--ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-K--YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-~--G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      +.++++|.- +|++++|+|||||||||||++|+|+++| .  |+|.++|.++.....  .++.|+||||++.        
T Consensus        20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ~~~l~p~~tv~   97 (362)
T TIGR03258        20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQNYALFPHLKVE   97 (362)
T ss_pred             EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEECCcccCCCCcHH
Confidence            556666664 5999999999999999999999999988 4  999999998864433  3468999999975        


Q ss_pred             HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +|+.++... .....+...++.++|+.++|....++++.+|||||||||+|+
T Consensus        98 enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLA  149 (362)
T TIGR03258        98 DNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIA  149 (362)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHH
Confidence            455544321 122233456788999999999899999999999999999974

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.88  E-value=6.2e-23  Score=173.73  Aligned_cols=119  Identities=18%  Similarity=0.087  Sum_probs=90.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~-------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......   .+++.++|+||++.       
T Consensus        22 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv  101 (269)
T PRK11831         22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV  101 (269)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCH
Confidence            455666664 59999999999999999999999999998 9999999887544332   24567999999864       


Q ss_pred             -HHHHhcCCCC--CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++....  ........++.++|+.++|....++.+.+||||||||++|+
T Consensus       102 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la  155 (269)
T PRK11831        102 FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA  155 (269)
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence             3333321111  11222345677899999998888999999999999999874

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1e-22  Score=173.13  Aligned_cols=120  Identities=14%  Similarity=0.034  Sum_probs=93.9

Q ss_pred             CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------
Q 029723           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------  138 (189)
Q Consensus        70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------  138 (189)
                      ....+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++.         
T Consensus        21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~  100 (277)
T PRK13642         21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE  100 (277)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence            356667666 469999999999999999999999999998 999999998865555566788999999873         


Q ss_pred             HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.++... .....+..+++.++++.++|....++++.+||+|||||++|+
T Consensus       101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lA  152 (277)
T PRK13642        101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVA  152 (277)
T ss_pred             HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence            233322111 111222345678899999998888999999999999999874

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=9.3e-23  Score=174.53  Aligned_cols=119  Identities=15%  Similarity=0.125  Sum_probs=91.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC----CchHHHhhhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----KEDGEFLMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~----~~~~~~~~~iG~v~Q~~~------  138 (189)
                      +..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++..    ....++++.++||||++.      
T Consensus        21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~  100 (288)
T PRK13643         21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE  100 (288)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccc
Confidence            455666654 59999999999999999999999999998 999999998742    223456778999999862      


Q ss_pred             ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++... .....+...++.++|+.++|. ...++.+.+||||||||++|+
T Consensus       101 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA  156 (288)
T PRK13643        101 TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA  156 (288)
T ss_pred             hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence               333333211 112233456788999999996 467899999999999999974

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.1e-22  Score=173.22  Aligned_cols=120  Identities=14%  Similarity=0.019  Sum_probs=92.6

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc-hHHHhhhceeccchhH--------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERI--------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~-~~~~~~~iG~v~Q~~~--------  138 (189)
                      ....+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.... ..++++.++|+||++.        
T Consensus        24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v  103 (280)
T PRK13633         24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV  103 (280)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence            3566677764 59999999999999999999999999998 99999999885432 3456778999999873        


Q ss_pred             -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++... .....+...++.++++.++|....++++.+||+|||||++|+
T Consensus       104 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la  156 (280)
T PRK13633        104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA  156 (280)
T ss_pred             HHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence             122222111 111223345688899999999889999999999999999874

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=9e-23  Score=172.26  Aligned_cols=119  Identities=16%  Similarity=0.109  Sum_probs=92.8

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++.        ++
T Consensus        26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~  105 (265)
T PRK10575         26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVREL  105 (265)
T ss_pred             EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHH
Confidence            45566666 469999999999999999999999999998 999999998865555566778999999853        34


Q ss_pred             HHhcCCCCC-----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~-----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+......     .......++.++|+.++|....++++.+||||||||++|+
T Consensus       106 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  159 (265)
T PRK10575        106 VAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA  159 (265)
T ss_pred             HHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence            443321110     0122345688899999998888999999999999999874

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1e-22  Score=173.02  Aligned_cols=119  Identities=18%  Similarity=0.115  Sum_probs=90.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--CchHHHhhhceeccchhH--------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..  .....+++.|+|++|++.        
T Consensus        17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv   96 (275)
T PRK13639         17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTV   96 (275)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccH
Confidence            455666664 59999999999999999999999999998 999999998742  122345678999999863        


Q ss_pred             -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++... .....+...++.++++.++|....++++.+||+|||||++|+
T Consensus        97 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~la  149 (275)
T PRK13639         97 EEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIA  149 (275)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHH
Confidence             233222111 111223345688899999998888999999999999999874

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.3e-22  Score=168.50  Aligned_cols=119  Identities=16%  Similarity=0.096  Sum_probs=91.7

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~--------~  139 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ +++.++|++|++.        +
T Consensus        18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   97 (241)
T PRK10895         18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYD   97 (241)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHH
Confidence            455666664 69999999999999999999999999998 99999999886544433 3568999999864        3


Q ss_pred             HHHhcCCCC--CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+.....  ....+...++.++++.+++....++++.+||+|||||++|+
T Consensus        98 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  149 (241)
T PRK10895         98 NLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIA  149 (241)
T ss_pred             HHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHH
Confidence            333321111  11223445788899999998888999999999999999874

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.7e-22  Score=171.15  Aligned_cols=119  Identities=11%  Similarity=0.013  Sum_probs=89.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--CchHHHhhhceeccchhH--------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..  .....+++.++|++|++.        
T Consensus        16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~   95 (271)
T PRK13638         16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDI   95 (271)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccH
Confidence            455666664 59999999999999999999999999998 999999998742  223345678999999863        


Q ss_pred             -HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.+... ......+...++.++++.++|....++++.+||||||||++|+
T Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la  148 (271)
T PRK13638         96 DSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIA  148 (271)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHH
Confidence             12222111 1111122345677899999998888999999999999999874

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.88  E-value=2.6e-23  Score=173.28  Aligned_cols=122  Identities=18%  Similarity=0.104  Sum_probs=101.0

Q ss_pred             CCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHh-hhceeccchhH------
Q 029723           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI------  138 (189)
Q Consensus        68 ~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~-~~iG~v~Q~~~------  138 (189)
                      ...+.|+++|+-+ |++++||||||||||||+++|+|+++|+ |+|.+.|.+|+..++.++. ..|+..||.+.      
T Consensus        16 Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lT   95 (250)
T COG0411          16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLT   95 (250)
T ss_pred             CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCc
Confidence            3457788888876 8999999999999999999999999999 9999999999988877764 47888899864      


Q ss_pred             --HHHHhcCCCCC-------------ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCPHA-------------AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~~~-------------~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +|+..+.....             ..++..+++.++|+.++|.+.++.+..+||+|||++++|+
T Consensus        96 VlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA  161 (250)
T COG0411          96 VLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA  161 (250)
T ss_pred             HHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence              56665532110             1234567889999999999999999999999999999874

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1e-22  Score=177.51  Aligned_cols=120  Identities=16%  Similarity=0.095  Sum_probs=92.8

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~------  138 (189)
                      .+..+++|.- +|++++|+|+||||||||+++|+|+++|+ |+|.++|.++......   .+++.|+||||++.      
T Consensus        29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~  108 (327)
T PRK11308         29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR  108 (327)
T ss_pred             eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence            4566777764 59999999999999999999999999998 9999999998765443   34568999999973      


Q ss_pred             ----HHHHhcCCC--CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP--HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++......  .+...+..+++.++|+.++|. ...++++.+||||||||++|+
T Consensus       109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iA  166 (327)
T PRK11308        109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIA  166 (327)
T ss_pred             cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHH
Confidence                122211111  122234456789999999996 467999999999999999874

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.6e-22  Score=171.08  Aligned_cols=119  Identities=17%  Similarity=0.099  Sum_probs=92.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~  139 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+++.++|++|++.         +
T Consensus        24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~  103 (269)
T PRK13648         24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKY  103 (269)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHH
Confidence            445556653 69999999999999999999999999998 999999998865555567778999999873         2


Q ss_pred             HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+.... ........+++.++++.+++....++++.+||+|||||++|+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  154 (269)
T PRK13648        104 DVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIA  154 (269)
T ss_pred             HHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHH
Confidence            22222111 111223345678899999998888999999999999999874

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.8e-22  Score=172.26  Aligned_cols=119  Identities=17%  Similarity=0.115  Sum_probs=92.5

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCCCCCchHHHhhhceeccchhH-------
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------  138 (189)
                      +..+++|. .+|++++|+|||||||||||++|+|+++|+    |+|.++|.++.......+++.++|+||++.       
T Consensus        22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t  101 (282)
T PRK13640         22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGAT  101 (282)
T ss_pred             ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCC
Confidence            55566665 369999999999999999999999999885    799999998865555566778999999873       


Q ss_pred             --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.++.. ......+..+++.++++.++|....++++.+||+||+||++|+
T Consensus       102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~la  155 (282)
T PRK13640        102 VGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIA  155 (282)
T ss_pred             HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHH
Confidence              23332211 1112223345688899999999889999999999999999874

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.1e-22  Score=170.51  Aligned_cols=119  Identities=19%  Similarity=0.210  Sum_probs=92.5

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++.        ++
T Consensus        17 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   96 (255)
T PRK11231         17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVREL   96 (255)
T ss_pred             EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHH
Confidence            45566666 469999999999999999999999999998 999999988755555566678999999864        34


Q ss_pred             HHhcCCCC---CC--hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPH---AA--IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~---~~--~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++....   ..  ......++.++++.++|....++++.+|||||+||++|+
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  150 (255)
T PRK11231         97 VAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLA  150 (255)
T ss_pred             HHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHH
Confidence            44432111   11  122345678899999998888999999999999999874

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.88  E-value=1.1e-22  Score=168.54  Aligned_cols=118  Identities=18%  Similarity=0.181  Sum_probs=89.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... ..++.++|++|++.        ++
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~~~~i~~~~q~~~~~~~~t~~~~   94 (236)
T TIGR03864        16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AALARLGVVFQQPTLDLDLSVRQN   94 (236)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hhhhhEEEeCCCCCCcccCcHHHH
Confidence            445555553 69999999999999999999999999998 999999988754433 33458999999864        33


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+.... .....+....+.++++.++|....++.+.+||||||||++|+
T Consensus        95 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la  144 (236)
T TIGR03864        95 LRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIA  144 (236)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence            3322111 111222345678899999998888999999999999999874

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.88  E-value=1.4e-22  Score=167.16  Aligned_cols=118  Identities=20%  Similarity=0.146  Sum_probs=90.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+..++++.++|+||++.       +++
T Consensus        22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl  101 (225)
T PRK10247         22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNL  101 (225)
T ss_pred             eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHH
Confidence            455566654 59999999999999999999999999998 999999998866556566778999999864       333


Q ss_pred             HhcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .+..... .......++.++|+.+++. ...++++.+||+||+||++|+
T Consensus       102 ~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la  149 (225)
T PRK10247        102 IFPWQIR-NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLI  149 (225)
T ss_pred             HhHHhhc-CCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHH
Confidence            3221110 0112345677899999996 467999999999999999874

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.7e-22  Score=168.23  Aligned_cols=116  Identities=18%  Similarity=0.083  Sum_probs=90.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++.       +++
T Consensus        18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l   97 (241)
T PRK14250         18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNI   97 (241)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHH
Confidence            445566654 59999999999999999999999999998 999999998865555566778999999965       222


Q ss_pred             HhcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .+.....   .....++.++++.++|. ...++.+.+||+|||||++|+
T Consensus        98 ~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la  143 (241)
T PRK14250         98 EYGPMLK---GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIA  143 (241)
T ss_pred             hcchhhc---CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence            2211110   11235678899999996 567899999999999999874

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.9e-22  Score=175.37  Aligned_cols=120  Identities=13%  Similarity=0.049  Sum_probs=91.8

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC----------------chHHHhhhce
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----------------EDGEFLMRNG  131 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~----------------~~~~~~~~iG  131 (189)
                      .+..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...                ....+++.++
T Consensus        40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig  119 (320)
T PRK13631         40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS  119 (320)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence            3556666663 59999999999999999999999999998 9999999877432                2345677899


Q ss_pred             eccchhH---------HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          132 ALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       132 ~v~Q~~~---------~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ||||++.         +++.++... .....+...++.++++.++|. ...++.+.+||||||||++|+
T Consensus       120 ~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiA  188 (320)
T PRK13631        120 MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIA  188 (320)
T ss_pred             EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHH
Confidence            9999873         333333211 112233446788899999996 578999999999999999974

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.87  E-value=1.9e-22  Score=165.62  Aligned_cols=120  Identities=17%  Similarity=0.115  Sum_probs=87.9

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch---HHHhhhceeccchhH------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~---~~~~~~iG~v~Q~~~------  138 (189)
                      ...++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+.   ..+++.++|++|++.      
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   98 (228)
T cd03257          19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR   98 (228)
T ss_pred             eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence            3456666664 59999999999999999999999999998 999999998865442   345678999999972      


Q ss_pred             ----HHHHhcCCCC-CChH-HHHHH-HHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH-AAIR-EDISI-NLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~-~~~~-~d~~~-v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+..... .... ..... +.++++.+++. ...++.+.+||+|||||++|+
T Consensus        99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la  157 (228)
T cd03257          99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA  157 (228)
T ss_pred             CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence                2222211111 1111 11122 35788999995 578999999999999999874

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=2.1e-22  Score=168.10  Aligned_cols=119  Identities=18%  Similarity=0.113  Sum_probs=90.8

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCCchHHHhhhceeccchhH-----
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-----  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|     + |+|.++|.++.......+++.|+|+||++.     
T Consensus        18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~   97 (250)
T PRK14247         18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNL   97 (250)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCC
Confidence            45666666 46999999999999999999999999873     5 999999998865555566778999999864     


Q ss_pred             ---HHHHhcCCC-CC--ChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCP-HA--AIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~-~~--~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++... ..  ...+..+++.++|+.++|..    ..++.+.+||||||||++|+
T Consensus        98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la  158 (250)
T PRK14247         98 SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA  158 (250)
T ss_pred             cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence               344333211 11  11233456788999999853    56889999999999999874

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.87  E-value=1.3e-22  Score=180.31  Aligned_cols=120  Identities=17%  Similarity=0.058  Sum_probs=92.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec----CCCCCchHHH---h-hhceeccchhH-
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGEF---L-MRNGALPEERI-  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~----di~~~~~~~~---~-~~iG~v~Q~~~-  138 (189)
                      ....+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.    ++...+..++   + +.++|+||++. 
T Consensus        38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l  117 (382)
T TIGR03415        38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL  117 (382)
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence            3456666665 49999999999999999999999999998 99999986    4544443332   2 47999999875 


Q ss_pred             -------HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -------RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -------~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                             +++.++.. ......+...++.++|+.++|....++++.+||||||||++|+
T Consensus       118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LA  176 (382)
T TIGR03415       118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLA  176 (382)
T ss_pred             CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence                   45544421 1122233456788999999999889999999999999999874

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.87  E-value=1.9e-22  Score=164.83  Aligned_cols=114  Identities=17%  Similarity=0.151  Sum_probs=86.2

Q ss_pred             cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc----hHHHhhhceeccchhH--------H
Q 029723           74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~----~~~~~~~iG~v~Q~~~--------~  139 (189)
                      +++|. .+ ++++|+|||||||||||++|+|+++|+ |+|.++|.++....    ...+++.++|++|++.        +
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~   94 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE   94 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence            44444 35 999999999999999999999999998 99999998874221    2234568999999864        2


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+..... .......++.++++.+++....++++.+||||||||++|+
T Consensus        95 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  143 (214)
T cd03297          95 NLAFGLKRK-RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALA  143 (214)
T ss_pred             HHHHHHhhC-CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHH
Confidence            333221111 1123455788899999998888999999999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.87  E-value=1.6e-22  Score=165.97  Aligned_cols=120  Identities=17%  Similarity=0.180  Sum_probs=92.3

Q ss_pred             CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH------
Q 029723           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~------  138 (189)
                      ....+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......   .+++.++|+||++.      
T Consensus        19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   98 (220)
T TIGR02982        19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT   98 (220)
T ss_pred             eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence            355666676 459999999999999999999999999998 9999999988544332   35678999999975      


Q ss_pred             --HHHHhcCCCC--CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.+.....  ....+...++.++++.++|....++++.+||+|||||++|+
T Consensus        99 ~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~la  153 (220)
T TIGR02982        99 ARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIA  153 (220)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence              2333221111  12223345788999999998888999999999999999874

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.87  E-value=1.9e-22  Score=164.81  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=88.1

Q ss_pred             cCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHh
Q 029723           74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET  143 (189)
Q Consensus        74 ~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~  143 (189)
                      +++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....  .+++.++|++|++.        +++.+
T Consensus        16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~t~~en~~~   93 (213)
T TIGR01277        16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIGL   93 (213)
T ss_pred             eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEEeccCccCCCCcHHHHHHh
Confidence            445544 59999999999999999999999999998 99999999875432  34568999999864        33333


Q ss_pred             cCCCCC-ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          144 GGCPHA-AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       144 g~~~~~-~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ...... .......++.++++.++|....++.+.+||+|||||++|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  140 (213)
T TIGR01277        94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALA  140 (213)
T ss_pred             HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHH
Confidence            211111 1122345678899999998888999999999999999874

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.87  E-value=1.6e-22  Score=177.78  Aligned_cols=115  Identities=19%  Similarity=0.086  Sum_probs=89.1

Q ss_pred             cCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc----hHHHhhhceeccchhH--------H
Q 029723           74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        74 ~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~----~~~~~~~iG~v~Q~~~--------~  139 (189)
                      +++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....    ....++.++|+||++.        +
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e   94 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG   94 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence            455553 69999999999999999999999999998 99999998875321    1234568999999864        4


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++... ....+...++.++|+.++|....++++.+||||||||++|+
T Consensus        95 nl~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalA  143 (354)
T TIGR02142        95 NLRYGMKR-ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIG  143 (354)
T ss_pred             HHHHHhhc-cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence            44443221 11122345688999999999889999999999999999874

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.87  E-value=2.1e-22  Score=168.93  Aligned_cols=119  Identities=19%  Similarity=0.202  Sum_probs=92.8

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.......+++.++|++|++.        ++
T Consensus        16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   95 (256)
T TIGR03873        16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDV   95 (256)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHH
Confidence            45555665 369999999999999999999999999998 999999998866555566678999999863        34


Q ss_pred             HHhcCCCC-----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~-----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++....     ....+..+++.++++.+++....++.+.+||+|||||++|+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  149 (256)
T TIGR03873        96 VALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVA  149 (256)
T ss_pred             HHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence            43332110     01123445788899999998888999999999999999874

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.87  E-value=2.4e-22  Score=167.55  Aligned_cols=119  Identities=16%  Similarity=0.108  Sum_probs=90.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc--------hHHHhhhceeccchhH--
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--------DGEFLMRNGALPEERI--  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~--------~~~~~~~iG~v~Q~~~--  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....        ...+++.++|++|++.  
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~   97 (250)
T PRK11264         18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLF   97 (250)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccC
Confidence            456666664 69999999999999999999999999998 99999998874321        2345668999999864  


Q ss_pred             ------HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ------~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                            +++.++..  .........+++.++++.++|....++++.+||+|||||++|+
T Consensus        98 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la  156 (250)
T PRK11264         98 PHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA  156 (250)
T ss_pred             CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHH
Confidence                  33332211  1111123345678899999998778999999999999999874

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.87  E-value=2.8e-22  Score=166.42  Aligned_cols=119  Identities=18%  Similarity=0.029  Sum_probs=91.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~  139 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...+..++ ++.++|++|++.        +
T Consensus        17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   96 (242)
T TIGR03411        17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFE   96 (242)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHH
Confidence            455566654 59999999999999999999999999998 999999998865544433 347999999864        3


Q ss_pred             HHHhcCCCC---------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~---------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+.....         ........++.++++.+++....++.+.+||+||+||++|+
T Consensus        97 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~la  155 (242)
T TIGR03411        97 NLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIG  155 (242)
T ss_pred             HHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            444322110         01123456788999999998888999999999999999874

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.3e-22  Score=170.83  Aligned_cols=119  Identities=14%  Similarity=0.097  Sum_probs=89.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC----chHHHhhhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~----~~~~~~~~iG~v~Q~~~------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...    ...++++.|+|++|++.      
T Consensus        22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~  101 (280)
T PRK13649         22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEE  101 (280)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccc
Confidence            455666664 69999999999999999999999999998 9999999887542    23455678999999862      


Q ss_pred             ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.+.... .....+...++.++|+.++|. ...++++.+||||||||++|+
T Consensus       102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la  157 (280)
T PRK13649        102 TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIA  157 (280)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence               222222111 111222345677889999997 467999999999999999874

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.87  E-value=1.4e-22  Score=162.12  Aligned_cols=123  Identities=15%  Similarity=0.096  Sum_probs=95.0

Q ss_pred             CCCCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH--
Q 029723           67 RRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI--  138 (189)
Q Consensus        67 ~~~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~--  138 (189)
                      ..+.....+++.- +||.++||||+||||||||-+++|+..|+ |+|.+.|+++.+++...+    .+.+|||||...  
T Consensus        21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li  100 (228)
T COG4181          21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI  100 (228)
T ss_pred             cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence            3344555555554 59999999999999999999999999999 999999999987765443    358999999864  


Q ss_pred             ------HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ------~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                            +|+.+.... .-..+.....+.++|+.+||...+.-+|.+|||||||||+|+
T Consensus       101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA  158 (228)
T COG4181         101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA  158 (228)
T ss_pred             ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence                  343332111 001123456688999999999999999999999999999974

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.7e-22  Score=165.12  Aligned_cols=114  Identities=20%  Similarity=0.135  Sum_probs=88.3

Q ss_pred             cCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHh
Q 029723           74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET  143 (189)
Q Consensus        74 ~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~  143 (189)
                      +++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.....  .++.++|+||++.        +++.+
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~e~l~~   94 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSMLFQENNLFSHLTVAQNIGL   94 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEEecccccccCCcHHHHHhc
Confidence            455553 59999999999999999999999999998 999999998754332  2457999999864        34433


Q ss_pred             cCCCCCC-hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          144 GGCPHAA-IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       144 g~~~~~~-~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ....... ......++.++++.++|....++++.+||+|||||++|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  141 (232)
T PRK10771         95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALA  141 (232)
T ss_pred             ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHH
Confidence            3211111 123456788999999998889999999999999999874

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=2.5e-22  Score=176.58  Aligned_cols=111  Identities=18%  Similarity=0.086  Sum_probs=88.0

Q ss_pred             cCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc----hHHHhhhceeccchhH--------H
Q 029723           74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        74 ~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~----~~~~~~~iG~v~Q~~~--------~  139 (189)
                      +++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....    ....++.++|+||++.        +
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e   95 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG   95 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence            455553 69999999999999999999999999998 99999998875321    2234568999999864        3


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++..     ....+++.++|+.++|....++++.+||||||||++|+
T Consensus        96 nl~~~~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvala  140 (352)
T PRK11144         96 NLRYGMA-----KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIG  140 (352)
T ss_pred             HHHhhhh-----hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHH
Confidence            3333211     12345788999999999889999999999999999974

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.87  E-value=4.1e-22  Score=168.54  Aligned_cols=120  Identities=13%  Similarity=0.069  Sum_probs=89.1

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------  138 (189)
                      ....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|+||++.         
T Consensus        27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv  106 (267)
T PRK15112         27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI  106 (267)
T ss_pred             ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence            3555666655 58999999999999999999999999998 999999988854333344567999999863         


Q ss_pred             -HHHHhcCCC--CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCP--HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.+....  ........+++.++|+.++|. ...++++.+||+|||||++|+
T Consensus       107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la  161 (267)
T PRK15112        107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA  161 (267)
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence             122211111  111122345678899999994 567889999999999999874

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=2e-22  Score=165.71  Aligned_cols=125  Identities=18%  Similarity=0.181  Sum_probs=94.3

Q ss_pred             CCCCCCCCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC------CccEEEeecCCCCC--chHHHhhhceecc
Q 029723           64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALP  134 (189)
Q Consensus        64 ~~~~~~~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p------~G~I~i~g~di~~~--~~~~~~~~iG~v~  134 (189)
                      ||....+.. ++++. +++.+++||||+|||||||||++.++...      +|+|.++|++|...  +..++|++||+||
T Consensus        16 yYg~~~aL~-~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVF   94 (253)
T COG1117          16 YYGDKHALK-DINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVF   94 (253)
T ss_pred             EECchhhhc-cCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeec
Confidence            444333333 33333 35899999999999999999999998642      39999999999753  5778999999999


Q ss_pred             chhH-------HHHHhcCCCCCCh-HHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723          135 EERI-------RAVETGGCPHAAI-REDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       135 Q~~~-------~~i~~g~~~~~~~-~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i  189 (189)
                      |.|+       +|+.+|...+-.. ++..+.++..|+...|++    .+++....||||||||+.|+
T Consensus        95 QkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA  161 (253)
T COG1117          95 QKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA  161 (253)
T ss_pred             cCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence            9987       6777775443221 344567888888888764    56677889999999999864

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.87  E-value=3.5e-22  Score=168.65  Aligned_cols=119  Identities=18%  Similarity=0.148  Sum_probs=90.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~-------  138 (189)
                      +.++++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......+   +++.++|++|++.       
T Consensus        26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  105 (265)
T TIGR02769        26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM  105 (265)
T ss_pred             EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCC
Confidence            556666664 59999999999999999999999999998 99999999886544332   4568999999862       


Q ss_pred             ---HHHHhcCC--CCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGC--PHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.+...  ..+.......++.++++.++|. ...++++.+||||||||++|+
T Consensus       106 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~la  162 (265)
T TIGR02769       106 TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIA  162 (265)
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH
Confidence               12221110  1111223456788899999996 577999999999999999874

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.87  E-value=2.1e-22  Score=163.67  Aligned_cols=116  Identities=17%  Similarity=0.110  Sum_probs=89.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.... ..+++.++|++|++.        ++
T Consensus        16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~tv~e~   94 (204)
T PRK13538         16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYLGHQPGIKTELTALEN   94 (204)
T ss_pred             EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEeCCccccCcCCcHHHH
Confidence            445566655 59999999999999999999999999998 99999998875432 345678999998753        33


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+..... . ..+..++.++|+.++|....++++.+||+|||||++|+
T Consensus        95 l~~~~~~~-~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la  141 (204)
T PRK13538         95 LRFYQRLH-G-PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALA  141 (204)
T ss_pred             HHHHHHhc-C-ccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHH
Confidence            33221110 0 02446788899999998888999999999999999874

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.7e-22  Score=165.89  Aligned_cols=119  Identities=18%  Similarity=0.173  Sum_probs=89.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC------CchHHHhhhceeccchhH----
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLMRNGALPEERI----  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~------~~~~~~~~~iG~v~Q~~~----  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..      .....+++.++|++|++.    
T Consensus        17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   96 (242)
T PRK11124         17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPH   96 (242)
T ss_pred             eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCC
Confidence            455666664 69999999999999999999999999998 999999988631      112345668999999864    


Q ss_pred             ----HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.....  ......+...++.++++.++|....++.+.+||||||||++|+
T Consensus        97 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la  153 (242)
T PRK11124         97 LTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIA  153 (242)
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence                23321110  0111122345678899999998888999999999999999874

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.7e-22  Score=174.76  Aligned_cols=120  Identities=14%  Similarity=0.126  Sum_probs=90.6

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccC----C-ccEEEeecCCCCCchHHHh----hhceeccchhHH
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFL----MRNGALPEERIR  139 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p----~-G~I~i~g~di~~~~~~~~~----~~iG~v~Q~~~~  139 (189)
                      .+..+++|.-+ |++++|+|+||||||||+++|+|+++|    + |+|.++|.++......+++    +.|+||||++..
T Consensus        21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~  100 (326)
T PRK11022         21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT  100 (326)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence            35666777665 899999999999999999999999973    6 9999999998766554433    369999999731


Q ss_pred             ----------HHHhcCCC--CCChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723          140 ----------AVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ----------~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i  189 (189)
                                ++......  .....+..+++.++|+.++|.+   ..++++.+|||||||||+|+
T Consensus       101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iA  165 (326)
T PRK11022        101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIA  165 (326)
T ss_pred             hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHH
Confidence                      11111101  1122345567889999999963   56889999999999999874

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.87  E-value=4e-22  Score=161.86  Aligned_cols=113  Identities=12%  Similarity=0.018  Sum_probs=89.0

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++... ...+++.++|++|++.        ++
T Consensus        15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~   93 (201)
T cd03231          15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-RDSIARGLLYLGHAPGIKTTLSVLEN   93 (201)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-cHHhhhheEEeccccccCCCcCHHHH
Confidence            44566665 469999999999999999999999999998 9999999887533 3456678999999764        23


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+...  .   ...+++.++++.+++....++++.+||+|||||++|+
T Consensus        94 l~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  137 (201)
T cd03231          94 LRFWHA--D---HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALA  137 (201)
T ss_pred             HHhhcc--c---ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHH
Confidence            322211  0   1345678899999998888999999999999999874

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.8e-22  Score=166.86  Aligned_cols=119  Identities=16%  Similarity=0.089  Sum_probs=90.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~  139 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++ +..++|+||++.        +
T Consensus        20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   99 (255)
T PRK11300         20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIE   99 (255)
T ss_pred             EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHH
Confidence            445556653 69999999999999999999999999998 999999998865544443 346899999864        3


Q ss_pred             HHHhcCCCC--------------C--ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPH--------------A--AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~--------------~--~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++....              .  ...+...++.++++.++|....++++.+||+|||||++|+
T Consensus       100 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la  165 (255)
T PRK11300        100 NLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIA  165 (255)
T ss_pred             HHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHH
Confidence            444321100              0  0012335678889999998889999999999999999874

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.87  E-value=1.1e-22  Score=166.13  Aligned_cols=124  Identities=17%  Similarity=0.125  Sum_probs=99.2

Q ss_pred             CCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----
Q 029723           65 FSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (189)
Q Consensus        65 ~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----  138 (189)
                      |.....+..+++|..+ |+++||+|+|||||||+||+|++++.|+ |.|++++.|... .+...+++||+++.+..    
T Consensus        11 y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGVl~~e~glY~R   89 (245)
T COG4555          11 YGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLFGERGLYAR   89 (245)
T ss_pred             ccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcceecCCcChhhh
Confidence            3333435567777765 9999999999999999999999999999 999999999854 55677889999986543    


Q ss_pred             ----HHHH-hcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVE-TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~-~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++. ++....+...+.+.++.++.+.|+|.+.+++++.+||-||||+|+|+
T Consensus        90 lT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iA  145 (245)
T COG4555          90 LTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIA  145 (245)
T ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHH
Confidence                3332 33333344445677899999999999999999999999999999874

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.86  E-value=4.6e-22  Score=161.27  Aligned_cols=114  Identities=11%  Similarity=-0.014  Sum_probs=88.7

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ....+++.++|++|++.        ++
T Consensus        16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~~   94 (200)
T PRK13540         16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRSGINPYLTLREN   94 (200)
T ss_pred             EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEeccccccCcCCCHHHH
Confidence            455666664 69999999999999999999999999998 999999988753 33456678999998754        33


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+.....    .....+.++++.+++....++++.+||+||+||++|+
T Consensus        95 ~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~la  139 (200)
T PRK13540         95 CLYDIHFS----PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALL  139 (200)
T ss_pred             HHHHHhcC----cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHH
Confidence            33321110    1234678899999998778899999999999999874

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.86  E-value=3.6e-22  Score=182.87  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=91.2

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.|+... ..++++.|+||+|++.       +|
T Consensus       349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eN  427 (529)
T TIGR02868       349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDN  427 (529)
T ss_pred             ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHH
Confidence            4567777765 59999999999999999999999999998 9999999999888 8889999999999986       66


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhh-------ccc----cccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKA-------DLL----LCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-------~~~----~~eLSGGqrq~~~~i  189 (189)
                      +.++.. ..    +.+++.++++..++.+..       +..    -..||||||||++|+
T Consensus       428 I~~g~~-~~----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA  482 (529)
T TIGR02868       428 LRLGRP-DA----TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA  482 (529)
T ss_pred             HhccCC-CC----CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence            666532 22    345566777777765432       222    346999999999974

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.86  E-value=4.2e-22  Score=181.81  Aligned_cols=119  Identities=16%  Similarity=0.117  Sum_probs=91.7

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~--------~  139 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+... +++.++|+||++.        +
T Consensus        19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e   98 (501)
T PRK10762         19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAE   98 (501)
T ss_pred             EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHH
Confidence            455666654 59999999999999999999999999998 99999999885443333 3457999999864        3


Q ss_pred             HHHhcCCCC-----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~-----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++....     ....+...++.++|+.++|....++++.+|||||||||+|+
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  153 (501)
T PRK10762         99 NIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA  153 (501)
T ss_pred             HhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence            444432111     11233345688899999998888999999999999999874

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.86  E-value=5.3e-22  Score=165.58  Aligned_cols=119  Identities=18%  Similarity=0.178  Sum_probs=89.5

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC------CccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p------~G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|      +|+|.++|.++...  ....+++.++|+||++.   
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   95 (247)
T TIGR00972        16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP   95 (247)
T ss_pred             eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC
Confidence            44556666 46999999999999999999999999986      59999999987542  23345678999999864   


Q ss_pred             ----HHHHhcCCCC--CChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH--AAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+.....  ....+...++.++++.++|.    ...++++.+||||||||++|+
T Consensus        96 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la  156 (247)
T TIGR00972        96 MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA  156 (247)
T ss_pred             CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHH
Confidence                3333321111  11223345678899999997    678899999999999999874

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.86  E-value=2.3e-22  Score=168.22  Aligned_cols=117  Identities=25%  Similarity=0.185  Sum_probs=98.7

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ..+.++++|.-+ |+++||+|+|||||||++|+|+|++.|+ |.|.|+|.++..    +...+|||+|.++.        
T Consensus        15 k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGyLPEERGLy~k~tv~   90 (300)
T COG4152          15 KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGYLPEERGLYPKMTVE   90 (300)
T ss_pred             eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcccChhhhccCccCcHH
Confidence            336677777765 9999999999999999999999999998 999999998843    45568999999975        


Q ss_pred             -HHHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       ...+++....+..++...++..+|+++++.....+++.+||-|+||++.||
T Consensus        91 dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfi  142 (300)
T COG4152          91 DQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFI  142 (300)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHH
Confidence             334455555566667788899999999999999999999999999999885

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=4.9e-22  Score=169.80  Aligned_cols=119  Identities=11%  Similarity=0.033  Sum_probs=88.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC----C-chHHHhhhceeccchhH-----
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----K-EDGEFLMRNGALPEERI-----  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~----~-~~~~~~~~iG~v~Q~~~-----  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..    . ...++++.|+|++|++.     
T Consensus        26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  105 (289)
T PRK13645         26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ  105 (289)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh
Confidence            555666664 59999999999999999999999999998 999999988742    1 23455678999999862     


Q ss_pred             ----HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++... .....+...++.++++.++|. ...++++.+||+|||||++|+
T Consensus       106 ~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~la  162 (289)
T PRK13645        106 ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALA  162 (289)
T ss_pred             hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence                223222111 111222345677899999995 578999999999999999874

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=5.4e-22  Score=167.04  Aligned_cols=114  Identities=16%  Similarity=0.131  Sum_probs=87.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...     ...++|++|++.        ++
T Consensus        16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v~q~~~~~~~~tv~e~   90 (255)
T PRK11248         16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVVFQNEGLLPWRNVQDN   90 (255)
T ss_pred             eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEEeCCCccCCCCcHHHH
Confidence            455566654 59999999999999999999999999998 9999999887432     235899999854        33


Q ss_pred             HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+... ......+...++.++|+.++|....++++.+||||||||++|+
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~la  140 (255)
T PRK11248         91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIA  140 (255)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence            332211 1112223345788999999998888999999999999999874

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.86  E-value=3.5e-22  Score=161.57  Aligned_cols=115  Identities=16%  Similarity=0.078  Sum_probs=87.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... .++++.++|++|++.        ++
T Consensus        15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~   93 (198)
T TIGR01189        15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYLGHLPGLKPELSALEN   93 (198)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEeccCcccccCCcHHHH
Confidence            445555554 59999999999999999999999999998 99999998875443 345678999998753        22


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+..... .  ....++.++++.+++....++++.+||+|||||++|+
T Consensus        94 l~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  139 (198)
T TIGR01189        94 LHFWAAIH-G--GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALA  139 (198)
T ss_pred             HHHHHHHc-C--CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHH
Confidence            22211000 0  1134578899999998888999999999999999874

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.86  E-value=5.7e-22  Score=165.84  Aligned_cols=119  Identities=17%  Similarity=0.157  Sum_probs=89.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc-------------hHHHhhhceeccc
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------------DGEFLMRNGALPE  135 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~-------------~~~~~~~iG~v~Q  135 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+             ...+++.++|++|
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q   94 (252)
T TIGR03005        15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQ   94 (252)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEec
Confidence            445556554 59999999999999999999999999998 99999998875321             1245678999999


Q ss_pred             hhH--------HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          136 ERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       136 ~~~--------~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.        +++.++..  ...........+.++|+.+++....++.+.+||+||+||++|+
T Consensus        95 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la  158 (252)
T TIGR03005        95 SFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIA  158 (252)
T ss_pred             CcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHH
Confidence            864        33333210  1111122345678899999998888999999999999999874

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.86  E-value=7.9e-22  Score=163.34  Aligned_cols=105  Identities=13%  Similarity=0.075  Sum_probs=82.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCC---C
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGC---P  147 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~---~  147 (189)
                      +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.....     ..+|++|++.        +++.+...   .
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~   84 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENIALAVDRVLP   84 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence            69999999999999999999999999998 999999988754322     2479998864        34433211   1


Q ss_pred             CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       148 ~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .....+...++.++++.++|....++++.+||||||||++|+
T Consensus        85 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  126 (230)
T TIGR01184        85 DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIA  126 (230)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHH
Confidence            112223345678899999998888999999999999999874

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.86  E-value=1.3e-22  Score=154.03  Aligned_cols=104  Identities=25%  Similarity=0.236  Sum_probs=85.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChH--HHHH
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIR--EDIS  156 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~--~d~~  156 (189)
                      +|++++|+|+|||||||||++|+|+++|+ |.|.+++.++.......+++.++|++|++.....      ..+.  ....
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~tv~~~~~~~   83 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPG------LTVRENESDE   83 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTT------SBHHHHHHHH
T ss_pred             CCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccc------cccccccccc
Confidence            69999999999999999999999999998 9999999999776666778899999999542211      1111  2455


Q ss_pred             HHHHHHhhcCCchhhcccc----ccCChHHHHhhhcC
Q 029723          157 INLGPLEELSNLFKADLLL----CESGGGNLQTISFI  189 (189)
Q Consensus       157 ~v~~~L~~lgL~~~~~~~~----~eLSGGqrq~~~~i  189 (189)
                      ++.++++.+++....+..+    .+||+|||||++|+
T Consensus        84 ~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la  120 (137)
T PF00005_consen   84 RIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALA  120 (137)
T ss_dssp             HHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHHHHHHHH
Confidence            7888999998876666666    99999999999874

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.86  E-value=6.7e-22  Score=161.87  Aligned_cols=115  Identities=19%  Similarity=0.180  Sum_probs=86.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      ....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|++|++.       ++
T Consensus        18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~   97 (220)
T cd03245          18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDN   97 (220)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHH
Confidence            3555666654 69999999999999999999999999998 999999988765455556678999999875       22


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhcccc-----------ccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLL-----------CESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~-----------~eLSGGqrq~~~~i  189 (189)
                      +.+... .    .....+.++++.+++....++++           .+||||||||++|+
T Consensus        98 l~~~~~-~----~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la  152 (220)
T cd03245          98 ITLGAP-L----ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA  152 (220)
T ss_pred             hhcCCC-C----CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHH
Confidence            222211 1    12345667888888876666544           69999999999874

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=6.1e-22  Score=164.12  Aligned_cols=118  Identities=19%  Similarity=0.120  Sum_probs=88.2

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH--------H
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~--------~  139 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ +++.++|++|++.        +
T Consensus        20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   99 (237)
T PRK11614         20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEE   99 (237)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHH
Confidence            45566666 469999999999999999999999999998 99999999886655443 4568999999864        3


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhc-CCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~l-gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++... ........++.++++.+ ++....+..+.+||+|||||++|+
T Consensus       100 ~l~~~~~~-~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la  149 (237)
T PRK11614        100 NLAMGGFF-AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIG  149 (237)
T ss_pred             HHHHhhhc-cChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHH
Confidence            33332211 11122234566777777 477677889999999999999874

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.86  E-value=8.3e-22  Score=163.15  Aligned_cols=118  Identities=16%  Similarity=0.131  Sum_probs=84.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.......+++.++|+||++.       +++
T Consensus        17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl   96 (237)
T cd03252          17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI   96 (237)
T ss_pred             ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHh
Confidence            455666663 69999999999999999999999999998 999999998865555566778999999864       233


Q ss_pred             HhcCCCCCChHHHH-----HHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDI-----SINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~-----~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .+... ........     ..+.++++.+  ++....++++.+||||||||++|+
T Consensus        97 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~la  150 (237)
T cd03252          97 ALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIA  150 (237)
T ss_pred             hccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHH
Confidence            33211 11111100     1123344554  455556788999999999999874

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.86  E-value=7.8e-22  Score=180.30  Aligned_cols=119  Identities=14%  Similarity=0.034  Sum_probs=92.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~  139 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+. ++.++||||++.        +
T Consensus        20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e   99 (510)
T PRK09700         20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLE   99 (510)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHH
Confidence            455666664 58999999999999999999999999998 999999998865544433 357999999864        3


Q ss_pred             HHHhcCCCC--------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPH--------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~--------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++....        ....+...++.++|+.++|....++++.+|||||||||+|+
T Consensus       100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia  157 (510)
T PRK09700        100 NLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA  157 (510)
T ss_pred             HhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence            444332110        01123456788999999998888999999999999999874

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.86  E-value=6e-22  Score=162.94  Aligned_cols=118  Identities=14%  Similarity=0.149  Sum_probs=87.9

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|++|++.       +++
T Consensus        29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl  108 (226)
T cd03248          29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNI  108 (226)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHh
Confidence            45566665 359999999999999999999999999998 999999988765444556678999999875       222


Q ss_pred             HhcCCCCCChHH-----HHHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIRE-----DISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~-----d~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++... ....+     ....+.++++.+  ++....+.++.+||||||||++|+
T Consensus       109 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la  162 (226)
T cd03248         109 AYGLQS-CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA  162 (226)
T ss_pred             ccccCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence            222111 11111     112245678888  777778889999999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.86  E-value=7.6e-22  Score=166.68  Aligned_cols=109  Identities=17%  Similarity=0.107  Sum_probs=86.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++.     .+++.++|++|++.        ++
T Consensus        27 il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~l~~~~tv~en  101 (257)
T PRK11247         27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRLMFQDARLLPWKKVIDN  101 (257)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEEEecCccCCCCCcHHHH
Confidence            455666664 59999999999999999999999999998 99999876542     34568999999864        23


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++..     .....++.++|+.++|....++.+.+||||||||++|+
T Consensus       102 l~~~~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~la  145 (257)
T PRK11247        102 VGLGLK-----GQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALA  145 (257)
T ss_pred             HHhccc-----chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence            332211     11235678899999998888999999999999999874

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=8.1e-22  Score=180.13  Aligned_cols=120  Identities=13%  Similarity=0.042  Sum_probs=92.6

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCCCCCchHH-HhhhceeccchhH------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~------  138 (189)
                      ...++++|.- +|++++|+|||||||||||++|+|+++|  + |+|.++|.++...+..+ +++.++||||++.      
T Consensus        19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   98 (506)
T PRK13549         19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELS   98 (506)
T ss_pred             EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCc
Confidence            3556666664 5899999999999999999999999986  6 99999999886544433 3467999999864      


Q ss_pred             --HHHHhcCCCC----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.++....    ....+..+++.++|+.++|....++++.+||||||||++|+
T Consensus        99 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la  155 (506)
T PRK13549         99 VLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIA  155 (506)
T ss_pred             HHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence              4444432211    12223446788999999998788999999999999999974

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.86  E-value=1.2e-21  Score=166.81  Aligned_cols=119  Identities=19%  Similarity=0.202  Sum_probs=92.3

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC---------CccEEEeecCCCCCchHHHhhhceeccchhH--
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD---------KYSLAAVTNDIFTKEDGEFLMRNGALPEERI--  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p---------~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--  138 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|         +|+|.++|.++......++++.++|+||++.  
T Consensus        16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~   95 (272)
T PRK13547         16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPA   95 (272)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCC
Confidence            45566665 46999999999999999999999999987         5999999998865555566677999999853  


Q ss_pred             ------HHHHhcCCCCC-----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ------RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ------~~i~~g~~~~~-----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                            +++.+......     ...+...++.++|+.++|....++++.+||||||||++|+
T Consensus        96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  157 (272)
T PRK13547         96 FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFA  157 (272)
T ss_pred             CCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence                  34433322111     0123445678899999998888999999999999999974

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=9.6e-22  Score=164.41  Aligned_cols=119  Identities=15%  Similarity=0.092  Sum_probs=88.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCC--CCchHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~--~~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|     + |+|.++|.++.  .....++++.++|++|++.   
T Consensus        19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   98 (253)
T PRK14267         19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFP   98 (253)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCC
Confidence            556666664 6999999999999999999999999986     4 99999999885  2234456678999999864   


Q ss_pred             -----HHHHhcCCC-CC--ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 -----RAVETGGCP-HA--AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -----~~i~~g~~~-~~--~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                           +++.++... ..  .......++.++++.+++.    ...++.+.+||+|||||++|+
T Consensus        99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  161 (253)
T PRK14267         99 HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA  161 (253)
T ss_pred             CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence                 333332111 11  1122345677889998874    356889999999999999874

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.86  E-value=1.4e-21  Score=160.51  Aligned_cols=119  Identities=15%  Similarity=0.086  Sum_probs=86.0

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee--c--CCCCCchHH---H-hhhceeccchhH--
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT--N--DIFTKEDGE---F-LMRNGALPEERI--  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g--~--di~~~~~~~---~-~~~iG~v~Q~~~--  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.+++  .  ++...+...   + ++.++|++|++.  
T Consensus        23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~  102 (224)
T TIGR02324        23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVI  102 (224)
T ss_pred             EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccC
Confidence            45566666 469999999999999999999999999998 9999984  2  443333332   2 357999999875  


Q ss_pred             ------HHHHhcCC-CCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          139 ------RAVETGGC-PHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ------~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                            +++.+... .........+++.++++.++|.. ..++++.+||+|||||++|+
T Consensus       103 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la  161 (224)
T TIGR02324       103 PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIA  161 (224)
T ss_pred             CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH
Confidence                  23322111 11111233457788999999975 35789999999999999874

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.86  E-value=7.5e-22  Score=162.75  Aligned_cols=117  Identities=20%  Similarity=0.105  Sum_probs=86.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~--------~  139 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......+ +++.++|++|++.        +
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   94 (230)
T TIGR03410        15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEE   94 (230)
T ss_pred             EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHH
Confidence            455666653 59999999999999999999999999998 99999998886554443 3467999999865        2


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcC-CchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lg-L~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++.....  ......+.++++.++ +....++++.+||||||||++|+
T Consensus        95 ~l~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la  143 (230)
T TIGR03410        95 NLLTGLAALP--RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIA  143 (230)
T ss_pred             HHHHHHHhcC--cchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHH
Confidence            2322211110  011234566777776 56678999999999999999874

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.85  E-value=9.5e-22  Score=171.69  Aligned_cols=120  Identities=18%  Similarity=0.159  Sum_probs=90.7

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC----CccEEEeecCCCCCchHHHh----hhceeccchhH--
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFL----MRNGALPEERI--  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p----~G~I~i~g~di~~~~~~~~~----~~iG~v~Q~~~--  138 (189)
                      .+..+++|.- +||+++|+|+||||||||+++|+|+++|    .|+|.++|.++......+++    +.|+||||++.  
T Consensus        30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~  109 (330)
T PRK09473         30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS  109 (330)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence            4566777764 5999999999999999999999999988    49999999999766655432    47999999973  


Q ss_pred             --------HHHHhcC--CCCCChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723          139 --------RAVETGG--CPHAAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --------~~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i  189 (189)
                              +++....  .......+...++.++|+.++|..   ..++++.+|||||+|||+|+
T Consensus       110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IA  173 (330)
T PRK09473        110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIA  173 (330)
T ss_pred             cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHH
Confidence                    1221111  011222334567888999999964   35789999999999999874

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.5e-21  Score=165.37  Aligned_cols=119  Identities=14%  Similarity=0.119  Sum_probs=87.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++     |+ |+|.++|.++..  .+..++++.++|+||++.   
T Consensus        28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  107 (269)
T PRK14259         28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP  107 (269)
T ss_pred             EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch
Confidence            456667764 699999999999999999999999987     57 999999988742  234456678999999864   


Q ss_pred             ----HHHHhcCCCCCChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+............+++.++++.+++.    ...++++.+||+|||||++|+
T Consensus       108 ~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la  166 (269)
T PRK14259        108 KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA  166 (269)
T ss_pred             hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence                333332211100112234567788888763    357889999999999999874

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.85  E-value=1.1e-21  Score=162.94  Aligned_cols=117  Identities=18%  Similarity=0.145  Sum_probs=89.5

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.....  .++.++|++|++.        ++
T Consensus        14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~e~   91 (235)
T cd03299          14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYVPQNYALFPHMTVYKN   91 (235)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEEeecCccCCCccHHHH
Confidence            35566666 469999999999999999999999999998 999999998864333  2468999999864        23


Q ss_pred             HHhcCCCC-CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~-~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+..... ....+..+.+.++++.++|....++++.+||+||+||++|+
T Consensus        92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  141 (235)
T cd03299          92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA  141 (235)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHH
Confidence            33221111 11122345677899999998889999999999999999874

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.3e-21  Score=163.19  Aligned_cols=119  Identities=12%  Similarity=0.117  Sum_probs=88.9

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc---CC-ccEEEeecCCCCCchHHHhhhceeccchhH-------
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~---p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++   |+ |+|.++|.++.......+++.++|+||++.       
T Consensus        17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~   96 (246)
T PRK14269         17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIY   96 (246)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHH
Confidence            44555555 3699999999999999999999999974   56 999999999865555566778999999964       


Q ss_pred             HHHHhcCCC-CC--ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCP-HA--AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~-~~--~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.++... ..  .......++.++++.++|.    ...++.+.+||+|||||++|+
T Consensus        97 eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  154 (246)
T PRK14269         97 ENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA  154 (246)
T ss_pred             HHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence            333332111 00  1123445678899999994    346788999999999999874

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.85  E-value=1.4e-21  Score=160.81  Aligned_cols=114  Identities=19%  Similarity=0.136  Sum_probs=81.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+..++++.++|++|++.       +++
T Consensus        18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~   97 (229)
T cd03254          18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENI   97 (229)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHH
Confidence            455666655 58999999999999999999999999998 999999988765555566778999999865       222


Q ss_pred             HhcCCCCCChHHHHHHHHHHHhhc-----------CCchhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDISINLGPLEEL-----------SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~~v~~~L~~l-----------gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .+.... .    ....+.++++.+           ++....++.+.+||+|||||++|+
T Consensus        98 ~~~~~~-~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la  151 (229)
T cd03254          98 RLGRPN-A----TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIA  151 (229)
T ss_pred             hccCCC-C----CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHH
Confidence            222111 1    112233333333           344445667899999999999874

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=2.9e-22  Score=170.38  Aligned_cols=117  Identities=17%  Similarity=0.067  Sum_probs=90.5

Q ss_pred             cccCcccCCC-cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HHHhhhceeccchhHHHHHhcC
Q 029723           72 ILSRNFNERA-FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERIRAVETGG  145 (189)
Q Consensus        72 ~~~~~f~~~G-eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~~~~~iG~v~Q~~~~~i~~g~  145 (189)
                      ..+++|..+| .+++|.|++|||||||+|+|+|+++|+ |.|.++|.-+.....    ..-+|+||||||+...+..+..
T Consensus        14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV   93 (352)
T COG4148          14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV   93 (352)
T ss_pred             EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence            3667788887 899999999999999999999999999 999999976643221    1235789999999653322222


Q ss_pred             CCCCC---hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          146 CPHAA---IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       146 ~~~~~---~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                      ..++.   +.......+++++.||+...++++|..|||||||||||
T Consensus        94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAI  139 (352)
T COG4148          94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAI  139 (352)
T ss_pred             ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHH
Confidence            11111   12234567788999999999999999999999999997

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.4e-21  Score=163.66  Aligned_cols=119  Identities=15%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ..++++|.- +|++++|+|+|||||||||++|+|+++|     + |+|.++|.++...  ....+++.++|++|++.   
T Consensus        22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  101 (254)
T PRK14273         22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL  101 (254)
T ss_pred             eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc
Confidence            455666664 5999999999999999999999999986     4 9999999887432  23345678999999864   


Q ss_pred             ----HHHHhcCCCC--CChHHHHHHHHHHHhhcCC----chhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH--AAIREDISINLGPLEELSN----LFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL----~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++....  ........++.++++.+++    ....++.+.+||||||||++|+
T Consensus       102 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~la  162 (254)
T PRK14273        102 MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA  162 (254)
T ss_pred             CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHH
Confidence                3443332111  1112234567788888887    3457889999999999999874

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.85  E-value=1.3e-21  Score=161.75  Aligned_cols=114  Identities=14%  Similarity=0.072  Sum_probs=84.4

Q ss_pred             cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC----C-ccEEEeecCCCCCchHHHhhhceeccchhHH--------
Q 029723           74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------  139 (189)
Q Consensus        74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p----~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~--------  139 (189)
                      +++|. ++|++++|+|||||||||||++|+|+++|    + |+|.++|.++...  ..+++.++|++|++..        
T Consensus         4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~~t~   81 (230)
T TIGR02770         4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPLFTM   81 (230)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcccCH
Confidence            34444 36999999999999999999999999998    7 9999999987432  2223579999999731        


Q ss_pred             --HHHhcCC-CCCChHHHHHHHHHHHhhcCCc---hhhccccccCChHHHHhhhcC
Q 029723          140 --AVETGGC-PHAAIREDISINLGPLEELSNL---FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 --~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~---~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        ++.+... .........+++.++|+.++|.   ...++.+.+||+|||||++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~la  137 (230)
T TIGR02770        82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIA  137 (230)
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHH
Confidence              1111110 0111123345688999999997   467899999999999999974

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.85  E-value=1.4e-21  Score=161.95  Aligned_cols=119  Identities=13%  Similarity=0.015  Sum_probs=85.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc--cCC-ccEEEeecCCCCCchHHH-hhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~-------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|++  +|+ |+|.++|.++.......+ +..++|++|++.       
T Consensus        15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~   94 (243)
T TIGR01978        15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSN   94 (243)
T ss_pred             EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCH
Confidence            445555554 59999999999999999999999995  677 999999998865554443 335899999864       


Q ss_pred             -HHHHhcCC--CC------CChHHHHHHHHHHHhhcCCc-hhhccccc-cCChHHHHhhhcC
Q 029723          139 -RAVETGGC--PH------AAIREDISINLGPLEELSNL-FKADLLLC-ESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~--~~------~~~~~d~~~v~~~L~~lgL~-~~~~~~~~-eLSGGqrq~~~~i  189 (189)
                       +++.+...  ..      ....+..+++.++++.++|. ...++.+. +||+|||||++|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la  156 (243)
T TIGR01978        95 LEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEIL  156 (243)
T ss_pred             HHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHH
Confidence             22222110  00      11122245678899999997 45678887 5999999999874

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.2e-21  Score=170.91  Aligned_cols=120  Identities=13%  Similarity=0.076  Sum_probs=89.2

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc----CC-ccEEEeecCCCCCchHHH----hhhceeccchhH-
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR----DK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI-  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~----p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~-  138 (189)
                      .+..+++|.- +|++++|+|+||||||||+++|+|+++    |+ |+|.++|.++......++    ++.|+||||++. 
T Consensus        21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~  100 (330)
T PRK15093         21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS  100 (330)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence            3566677664 599999999999999999999999986    46 999999999876555443    247999999874 


Q ss_pred             ---------HHHHhc--CC-CC----CChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723          139 ---------RAVETG--GC-PH----AAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---------~~i~~g--~~-~~----~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i  189 (189)
                               +++...  .. ..    ....+...++.++|+.++|..   ..++++.+|||||||||+|+
T Consensus       101 ~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iA  170 (330)
T PRK15093        101 CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIA  170 (330)
T ss_pred             hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHH
Confidence                     112111  00 00    011223467889999999974   46899999999999999974

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.85  E-value=2.1e-21  Score=160.14  Aligned_cols=106  Identities=21%  Similarity=0.231  Sum_probs=83.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----------HHHHhcCCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----------RAVETGGCP  147 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----------~~i~~g~~~  147 (189)
                      .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.     +.++.++|++|++.          +++.++...
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~   78 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG   78 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence            479999999999999999999999999998 99999998762     23567999999863          223232111


Q ss_pred             C-----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          148 H-----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       148 ~-----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .     .....+..++.++++.+++....++++.+||+|||||++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  125 (223)
T TIGR03771        79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVA  125 (223)
T ss_pred             ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHH
Confidence            1     01123345688899999998888999999999999999874

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.85  E-value=1.1e-21  Score=160.01  Aligned_cols=113  Identities=16%  Similarity=0.105  Sum_probs=86.5

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++..  . .+++.++|++|++.        ++
T Consensus        17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~~~~~~~~~~~~tv~~~   93 (207)
T PRK13539         17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHYLGHRNAMKPALTVAEN   93 (207)
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEEecCCCcCCCCCcHHHH
Confidence            45566766 469999999999999999999999999998 999999987632  1 25678999987643        23


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+..... .  ....++.++++.++|....++++.+||+|||||++|+
T Consensus        94 l~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  139 (207)
T PRK13539         94 LEFWAAFL-G--GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALA  139 (207)
T ss_pred             HHHHHHhc-C--CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHH
Confidence            32211100 0  1234578899999998778899999999999999874

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.85  E-value=1.3e-21  Score=162.70  Aligned_cols=118  Identities=17%  Similarity=0.062  Sum_probs=87.5

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccc-hhH--------H
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE-ERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q-~~~--------~  139 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.+++.++.. ....+++.++|++| .+.        +
T Consensus        36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~tv~e  114 (236)
T cd03267          36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFGQKTQLWWDLPVID  114 (236)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchhhcccEEEEcCCccccCCCCcHHH
Confidence            55666666 469999999999999999999999999998 999999987643 22345668999984 322        2


Q ss_pred             HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+... ......+...++.++++.++|....++++.+||+|||||++|+
T Consensus       115 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la  165 (236)
T cd03267         115 SFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIA  165 (236)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence            3322211 1111223345677889999998888999999999999999874

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.85  E-value=1.5e-21  Score=178.72  Aligned_cols=116  Identities=14%  Similarity=0.076  Sum_probs=91.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHh-hhceeccchhH--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~-~~iG~v~Q~~~--------~  139 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......+++ +.++|++|++.        +
T Consensus        26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e  105 (510)
T PRK15439         26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKE  105 (510)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHH
Confidence            445566654 59999999999999999999999999998 9999999988654444433 46999999864        3


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++..   ...+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus       106 ~l~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  152 (510)
T PRK15439        106 NILFGLP---KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEIL  152 (510)
T ss_pred             Hhhcccc---cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHH
Confidence            3333221   1123456788899999998888999999999999999974

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.85  E-value=2.9e-21  Score=162.25  Aligned_cols=119  Identities=18%  Similarity=0.121  Sum_probs=87.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC-----CCCCchHHH----hhhceeccchhHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF----LMRNGALPEERIR  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d-----i~~~~~~~~----~~~iG~v~Q~~~~  139 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.+     +......++    ++.++|++|++..
T Consensus        21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~  100 (258)
T PRK11701         21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRD  100 (258)
T ss_pred             eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCccc
Confidence            444555544 59999999999999999999999999998 999999988     654443332    4479999999731


Q ss_pred             ----------HHHhcC--CCCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          140 ----------AVETGG--CPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ----------~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                                ++....  .......+...++.++++.+++.. ..++.+.+||+|||||++|+
T Consensus       101 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la  163 (258)
T PRK11701        101 GLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA  163 (258)
T ss_pred             ccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence                      221110  000111223456788999999974 67899999999999999975

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.1e-21  Score=177.40  Aligned_cols=119  Identities=18%  Similarity=0.168  Sum_probs=89.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch-HHHhhhceeccchh---H------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEER---I------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~---~------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+. ..+++.++|+||++   .      
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t  357 (510)
T PRK09700        278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS  357 (510)
T ss_pred             cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence            455666654 59999999999999999999999999998 999999988754333 23456899999973   1      


Q ss_pred             --HHHHhcCCC----C------CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCP----H------AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~----~------~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.++...    .      ........++.++|+.++|. ...++++.+|||||||||+|+
T Consensus       358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lA  421 (510)
T PRK09700        358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLIS  421 (510)
T ss_pred             HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHH
Confidence              333332110    0      01122345678899999996 678999999999999999974

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.85  E-value=1.9e-21  Score=163.30  Aligned_cols=119  Identities=13%  Similarity=0.054  Sum_probs=88.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC-------------chHHHhhhceeccc
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-------------EDGEFLMRNGALPE  135 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~-------------~~~~~~~~iG~v~Q  135 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...             ....+++.++|++|
T Consensus        20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q   99 (257)
T PRK10619         20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ   99 (257)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEec
Confidence            445555553 69999999999999999999999999998 9999999877421             12345678999999


Q ss_pred             hhH--------HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhh-ccccccCChHHHHhhhcC
Q 029723          136 ERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKA-DLLLCESGGGNLQTISFI  189 (189)
Q Consensus       136 ~~~--------~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~-~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.        +++.++..  .........+++.++++.++|.... ++++.+||+|||||++|+
T Consensus       100 ~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la  164 (257)
T PRK10619        100 HFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA  164 (257)
T ss_pred             CcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence            864        33332211  1111223456788899999998654 889999999999999874

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.1e-21  Score=183.65  Aligned_cols=120  Identities=17%  Similarity=0.068  Sum_probs=91.3

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~------  138 (189)
                      .+..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...+..   .++++|+||||++.      
T Consensus       338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~  417 (623)
T PRK10261        338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR  417 (623)
T ss_pred             EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence            3556777764 59999999999999999999999999998 9999999988654432   24568999999862      


Q ss_pred             ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+.... .. ...+..+++.++|+.++|. ...++++.+|||||||||+|+
T Consensus       418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iA  475 (623)
T PRK10261        418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIA  475 (623)
T ss_pred             CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence                222221110 11 1223346788999999996 578999999999999999974

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.85  E-value=1.5e-21  Score=161.19  Aligned_cols=118  Identities=17%  Similarity=0.133  Sum_probs=85.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|++|++.       +++
T Consensus        17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl   96 (234)
T cd03251          17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENI   96 (234)
T ss_pred             ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHh
Confidence            455666654 69999999999999999999999999998 999999988765555566778999999864       333


Q ss_pred             HhcCCCCCChHHH-----HHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIRED-----ISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d-----~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .+.... ......     ...+.++++.+  ++....+.++.+||+|||||++|+
T Consensus        97 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  150 (234)
T cd03251          97 AYGRPG-ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIA  150 (234)
T ss_pred             hccCCC-CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHH
Confidence            332211 111110     11234555555  566566788999999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.85  E-value=1.4e-21  Score=177.65  Aligned_cols=119  Identities=11%  Similarity=-0.084  Sum_probs=89.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE------  142 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~------  142 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+..++++.++|++|++...+.      
T Consensus        18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~   97 (490)
T PRK10938         18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDD   97 (490)
T ss_pred             ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhh
Confidence            455555553 69999999999999999999999999998 9999988877544445556679999998642110      


Q ss_pred             --hcCCCCCCh-HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          143 --TGGCPHAAI-REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       143 --~g~~~~~~~-~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +.....+.. ....+++.++|+.++|....++++.+|||||||||+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  147 (490)
T PRK10938         98 TGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLC  147 (490)
T ss_pred             ccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHH
Confidence              010111110 12346788999999998888999999999999999974

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.7e-21  Score=162.93  Aligned_cols=119  Identities=14%  Similarity=0.094  Sum_probs=87.2

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|++.     |+ |+|.++|.++..  .....+++.++|++|++.   
T Consensus        21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  100 (253)
T PRK14242         21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP  100 (253)
T ss_pred             eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc
Confidence            45666666 3599999999999999999999999864     56 999999988753  223345678999999863   


Q ss_pred             ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++... .. ......+++.++++.+++..    ..++.+.+||||||||++|+
T Consensus       101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la  161 (253)
T PRK14242        101 KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIA  161 (253)
T ss_pred             CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence                333332111 11 11223456788899999843    46788999999999999874

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.85  E-value=2.1e-21  Score=179.48  Aligned_cols=117  Identities=15%  Similarity=0.096  Sum_probs=90.9

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+..++++|.- +|+.++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++.       +
T Consensus       356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~  435 (582)
T PRK11176        356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIAN  435 (582)
T ss_pred             CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHH
Confidence            34566666664 59999999999999999999999999998 999999999988888888999999999975       6


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhh-------ccc----cccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKA-------DLL----LCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-------~~~----~~eLSGGqrq~~~~i  189 (189)
                      |+.++.....    +.+++.++++.+++.+..       +..    -.+||||||||++|+
T Consensus       436 Ni~~~~~~~~----~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LA  492 (582)
T PRK11176        436 NIAYARTEQY----SREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIA  492 (582)
T ss_pred             HHhcCCCCCC----CHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHH
Confidence            6666532212    345566666666654322       222    356999999999874

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.3e-21  Score=165.95  Aligned_cols=116  Identities=18%  Similarity=0.175  Sum_probs=86.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHH---------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR---------  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~---------  139 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..   ..+++.++|++|++..         
T Consensus        22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~~~~~~~   98 (272)
T PRK15056         22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAYVPQSEEVDWSFPVLVE   98 (272)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEEeccccccccCCCcchh
Confidence            455666654 59999999999999999999999999998 999999988731   1123469999998631         


Q ss_pred             -HHHhcCCCC-----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 -AVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 -~i~~g~~~~-----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       ++.++....     ........++.++++.++|....++++.+||||||||++|+
T Consensus        99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~la  154 (272)
T PRK15056         99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLA  154 (272)
T ss_pred             hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence             111111110     01122345678899999998888999999999999999874

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.85  E-value=1e-21  Score=156.94  Aligned_cols=94  Identities=26%  Similarity=0.315  Sum_probs=80.5

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCC
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH  148 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~  148 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.+++.++......++++.++|+||             
T Consensus        14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q-------------   80 (180)
T cd03214          14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ-------------   80 (180)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-------------
Confidence            45555665 469999999999999999999999999998 999999998866555566678999887             


Q ss_pred             CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          149 AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       149 ~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                                  +++.+++....++.+.+||+|||||++|+
T Consensus        81 ------------~l~~~gl~~~~~~~~~~LS~G~~qrl~la  109 (180)
T cd03214          81 ------------ALELLGLAHLADRPFNELSGGERQRVLLA  109 (180)
T ss_pred             ------------HHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence                        77788888778889999999999999874

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.85  E-value=2.3e-21  Score=160.54  Aligned_cols=117  Identities=15%  Similarity=0.070  Sum_probs=89.1

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.....  .++.++|++|++.        ++
T Consensus        15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~~n   92 (232)
T cd03300          15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTVFQNYALFPHLTVFEN   92 (232)
T ss_pred             eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEEecccccCCCCcHHHH
Confidence            45566665 469999999999999999999999999998 999999988864332  2468999999865        22


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+.... .........++.++++.++|....++.+.+||+||+||++|+
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la  142 (232)
T cd03300          93 IAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIA  142 (232)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            2221110 011122345677899999998889999999999999999874

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.85  E-value=2.5e-21  Score=162.98  Aligned_cols=119  Identities=17%  Similarity=0.215  Sum_probs=89.7

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCCCCC-----chHHHhhhceeccchhH--
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTK-----EDGEFLMRNGALPEERI--  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di~~~-----~~~~~~~~iG~v~Q~~~--  138 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+    |+|.++|.++...     ....+++.++|+||++.  
T Consensus        19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~   98 (262)
T PRK09984         19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLV   98 (262)
T ss_pred             EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccc
Confidence            45566666 469999999999999999999999999863    8999999887432     12345668999999864  


Q ss_pred             ------HHHHhcCCCC---------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ------RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ------~~i~~g~~~~---------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                            +++.++....         ....+...++.++++.++|....++.+.+||+|||||++|+
T Consensus        99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  164 (262)
T PRK09984         99 NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA  164 (262)
T ss_pred             cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHH
Confidence                  3343332110         00123345788999999998788999999999999999874

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.9e-21  Score=177.00  Aligned_cols=119  Identities=14%  Similarity=0.089  Sum_probs=91.2

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccchhH--------H
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q~~~--------~  139 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+.. .+++.++|+||++.        +
T Consensus        13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~   92 (491)
T PRK10982         13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMD   92 (491)
T ss_pred             eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHH
Confidence            45566666 469999999999999999999999999998 9999999988644433 34567999999864        3


Q ss_pred             HHHhcCCCC----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++....    ....+..+++.++|+.+++....++++.+|||||||||+|+
T Consensus        93 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA  146 (491)
T PRK10982         93 NMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIA  146 (491)
T ss_pred             HhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence            443332111    11122345688899999998778999999999999999974

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.85  E-value=1.9e-21  Score=160.24  Aligned_cols=117  Identities=15%  Similarity=0.087  Sum_probs=87.6

Q ss_pred             CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc---CC-ccEEEeecCCCCCchHHHhhhceeccchhH------
Q 029723           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~---p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------  138 (189)
                      ....+++|. .+|++++|+|||||||||||++|+|+++   |+ |+|.++|.++.   ...+++.++|+||++.      
T Consensus        21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~~~~q~~~~~~~~t   97 (226)
T cd03234          21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQKCVAYVRQDDILLPGLT   97 (226)
T ss_pred             ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhcccEEEeCCCCccCcCCc
Confidence            355666666 4699999999999999999999999998   87 99999998874   2356678999999864      


Q ss_pred             --HHHHhcCCCC----CChHHHHHHHHH-HHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCPH----AAIREDISINLG-PLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~~----~~~~~d~~~v~~-~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.+.....    ........++.+ +|+.+++....++.+.+||+||+||++|+
T Consensus        98 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  155 (226)
T cd03234          98 VRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIA  155 (226)
T ss_pred             HHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHH
Confidence              3443321111    011112234455 89999998788899999999999999874

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.85  E-value=2.3e-21  Score=182.80  Aligned_cols=115  Identities=15%  Similarity=0.061  Sum_probs=92.6

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+..++++|.- +|+.++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++.       +
T Consensus       466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~e  545 (686)
T TIGR03797       466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE  545 (686)
T ss_pred             ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHH
Confidence            34566677765 59999999999999999999999999998 999999999998889999999999999986       6


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i  189 (189)
                      |+.++..  .    +.+++.++++..++.+....           .-..||||||||++|+
T Consensus       546 Ni~~~~~--~----~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA  600 (686)
T TIGR03797       546 NIAGGAP--L----TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA  600 (686)
T ss_pred             HHhcCCC--C----CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence            6666532  2    34566777777777653322           2356999999999874

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=2.1e-21  Score=158.20  Aligned_cols=115  Identities=17%  Similarity=0.112  Sum_probs=93.0

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      ++..++++.- .|+++.++||+||||||||++++|+..|. |+|.++++.|.....     .-|+|||+..        +
T Consensus        19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----ergvVFQ~~~LlPWl~~~d   93 (259)
T COG4525          19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERGVVFQNEALLPWLNVID   93 (259)
T ss_pred             hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cceeEeccCccchhhHHHH
Confidence            4455555554 48999999999999999999999999999 999999999864322     3589999975        6


Q ss_pred             HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      |+.+|... .+...+-.+.+.+.|..++|.+..++++-+|||||||||.|+
T Consensus        94 NvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiA  144 (259)
T COG4525          94 NVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIA  144 (259)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHH
Confidence            77776532 334445567788999999999888999999999999999764

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.6e-21  Score=176.61  Aligned_cols=119  Identities=17%  Similarity=0.089  Sum_probs=91.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccchhH--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q~~~--------~  139 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .+++.++|++|++.        +
T Consensus        19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~   98 (501)
T PRK11288         19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAE   98 (501)
T ss_pred             EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHH
Confidence            455666654 59999999999999999999999999998 9999999988543332 34568999999864        4


Q ss_pred             HHHhcCCCC----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++....    ....+...++.++|+.++|....++++.+||||||||++|+
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la  152 (501)
T PRK11288         99 NLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA  152 (501)
T ss_pred             HHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence            444432111    11223346788999999998778899999999999999974

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.6e-21  Score=162.84  Aligned_cols=119  Identities=14%  Similarity=0.111  Sum_probs=88.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++     |+ |+|.++|.++..  .+...+++.++|+||++.   
T Consensus        28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~  107 (260)
T PRK10744         28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP  107 (260)
T ss_pred             EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc
Confidence            455666663 699999999999999999999999986     46 999999988743  223455678999999864   


Q ss_pred             ----HHHHhcCCC--CCChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP--HAAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++...  .....+..+++.++++.+++.    ...++.+.+||+|||||++|+
T Consensus       108 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la  168 (260)
T PRK10744        108 MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIA  168 (260)
T ss_pred             CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHH
Confidence                333332111  112223345678899999874    356889999999999999874

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.1e-21  Score=164.18  Aligned_cols=119  Identities=16%  Similarity=0.131  Sum_probs=88.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|     + |+|.++|.++..  .....+++.++|++|++.   
T Consensus        34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  113 (267)
T PRK14235         34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP  113 (267)
T ss_pred             EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC
Confidence            455666664 6999999999999999999999999874     6 999999988753  233456678999999864   


Q ss_pred             ----HHHHhcCCC-CC--ChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HA--AIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~--~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++... ..  ...+...++.++++.++|..    ..++.+.+||+|||||++|+
T Consensus       114 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la  175 (267)
T PRK14235        114 KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA  175 (267)
T ss_pred             CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence                344332211 11  11223456788999999953    46788999999999999874

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.85  E-value=2.3e-21  Score=158.76  Aligned_cols=113  Identities=19%  Similarity=0.131  Sum_probs=84.7

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++......++++.++|++|++.       +++
T Consensus        19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl   98 (221)
T cd03244          19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL   98 (221)
T ss_pred             cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHh
Confidence            455555654 58999999999999999999999999998 999999998865556667788999999975       222


Q ss_pred             HhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i  189 (189)
                      .+.  ...    ..+++.++++.+++....           +..+.+||+|||||++|+
T Consensus        99 ~~~--~~~----~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~la  151 (221)
T cd03244          99 DPF--GEY----SDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLA  151 (221)
T ss_pred             CcC--CCC----CHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHH
Confidence            111  111    223455666666665433           468899999999999874

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.84  E-value=3.1e-21  Score=161.35  Aligned_cols=119  Identities=17%  Similarity=0.113  Sum_probs=87.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC-----CCCCchHHH----hhhceeccchhHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF----LMRNGALPEERIR  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d-----i~~~~~~~~----~~~iG~v~Q~~~~  139 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.+     +......++    ++.++|++|++..
T Consensus        18 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~   97 (253)
T TIGR02323        18 GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRD   97 (253)
T ss_pred             EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCccc
Confidence            345666664 69999999999999999999999999998 999999877     544333322    3569999998631


Q ss_pred             ----------HHHhcC--CCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          140 ----------AVETGG--CPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ----------~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                                ++....  ............+.++++.+++. ...++.+.+||||||||++|+
T Consensus        98 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la  160 (253)
T TIGR02323        98 GLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA  160 (253)
T ss_pred             ccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence                      221100  00011112345678899999997 478999999999999999874

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.84  E-value=3.1e-21  Score=176.55  Aligned_cols=121  Identities=19%  Similarity=0.099  Sum_probs=93.1

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC--CCchHHHhhhceeccchhHH-----
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRNGALPEERIR-----  139 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~--~~~~~~~~~~iG~v~Q~~~~-----  139 (189)
                      ..+.++++|.-+ ||++||||++|||||||.|+|+|+++|+ |.|.++|.++.  ..+..+.++++-++||+|..     
T Consensus       304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr  383 (539)
T COG1123         304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR  383 (539)
T ss_pred             eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence            567788888876 9999999999999999999999999998 99999998832  11233456789999999861     


Q ss_pred             -----HHHhcCC--CCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          140 -----AVETGGC--PHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 -----~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                           .+.....  ......+..+++.++|+.++|.. .++++|.|||||||||++|+
T Consensus       384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIA  441 (539)
T COG1123         384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIA  441 (539)
T ss_pred             ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHH
Confidence                 1111111  11112334457999999999986 69999999999999999984

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.84  E-value=3e-21  Score=159.92  Aligned_cols=118  Identities=16%  Similarity=0.069  Sum_probs=81.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...+..++++.++|++|++.       +++
T Consensus        18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l   97 (238)
T cd03249          18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI   97 (238)
T ss_pred             ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHh
Confidence            455556553 69999999999999999999999999998 999999988765555556678999999865       222


Q ss_pred             HhcCCCCCChHHHHH-----HHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDIS-----INLGPLEEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~-----~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .+..... ...+...     .+.+.++.+  ++....++.+.+||+|||||++|+
T Consensus        98 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  151 (238)
T cd03249          98 RYGKPDA-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIA  151 (238)
T ss_pred             hccCCCC-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHH
Confidence            2221111 1111000     122233333  444456777899999999999874

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=3.1e-21  Score=162.06  Aligned_cols=119  Identities=14%  Similarity=0.072  Sum_probs=87.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|     + |+|.++|.++..  .....+++.++|++|++.   
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   98 (258)
T PRK14241         19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFP   98 (258)
T ss_pred             eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCC
Confidence            455666664 6999999999999999999999999873     5 999999988742  223455678999999854   


Q ss_pred             -----HHHHhcCCC-C-CChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 -----RAVETGGCP-H-AAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -----~~i~~g~~~-~-~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                           +++.+.... . .......+++.++|+.+++.    ...++.+.+||+|||||++|+
T Consensus        99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  160 (258)
T PRK14241         99 TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA  160 (258)
T ss_pred             CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence                 333322111 1 11122345677889999884    457889999999999999874

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.84  E-value=3e-21  Score=166.40  Aligned_cols=121  Identities=17%  Similarity=0.150  Sum_probs=95.0

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhccc-C----C-ccEEEeecCCCCCchHHH----hhhceeccchh
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR-D----K-YSLAAVTNDIFTKEDGEF----LMRNGALPEER  137 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~-p----~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~  137 (189)
                      ..+.++++|.-+ ||++||||.+|||||||.+.|+|+++ |    . |+|.++|.++...+..++    .+.|++|||+|
T Consensus        18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p   97 (316)
T COG0444          18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP   97 (316)
T ss_pred             EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence            457778888765 89999999999999999999999997 3    3 899999999988887653    34899999998


Q ss_pred             HH----------HHHhcCCCCC---ChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723          138 IR----------AVETGGCPHA---AIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       138 ~~----------~i~~g~~~~~---~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ..          ++.-....+.   ..++..+++.++|+.++|.+   ..+.+|.+|||||+|||.|+
T Consensus        98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IA  165 (316)
T COG0444          98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIA  165 (316)
T ss_pred             hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHH
Confidence            61          1111111111   23345678999999999974   57999999999999999874

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.84  E-value=3.1e-21  Score=178.70  Aligned_cols=114  Identities=20%  Similarity=0.124  Sum_probs=88.3

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|++++|+||||||||||+++|+|++ |+ |+|.++|.++...+..++++.|+||+|++.       +|
T Consensus       364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN  442 (588)
T PRK11174        364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN  442 (588)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence            3556666764 59999999999999999999999999 77 999999999998889999999999999986       67


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCch-----------hhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-----------~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++. +..    +.+++.++++..++.+           .....-..||||||||++|+
T Consensus       443 I~~g~-~~~----~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialA  497 (588)
T PRK11174        443 VLLGN-PDA----SDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALA  497 (588)
T ss_pred             hhcCC-CCC----CHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHH
Confidence            77763 222    2344555555544432           23333456999999999974

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.84  E-value=3.3e-21  Score=157.89  Aligned_cols=114  Identities=15%  Similarity=0.071  Sum_probs=86.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++..   ..+++.++|++|++.        ++
T Consensus        26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~---~~~~~~i~~~~q~~~~~~~~t~~e~  102 (214)
T PRK13543         26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GDRSRFMAYLGHLPGLKADLSTLEN  102 (214)
T ss_pred             eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccc---hhhhhceEEeecCcccccCCcHHHH
Confidence            455555554 59999999999999999999999999998 999999988753   234457999999854        22


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+..... . ....+++.++++.++|....++++.+||+|||||++|+
T Consensus       103 l~~~~~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  149 (214)
T PRK13543        103 LHFLCGLH-G-RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALA  149 (214)
T ss_pred             HHHHHHhc-C-CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHH
Confidence            22211100 0 11234567889999998888999999999999999874

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.84  E-value=4e-21  Score=178.26  Aligned_cols=114  Identities=13%  Similarity=0.047  Sum_probs=92.1

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|++++|+|+||||||||+++|+|+++|+ |+|.++|.++...+...+++.|+||+|++.       +|
T Consensus       355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~N  434 (592)
T PRK10790        355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLAN  434 (592)
T ss_pred             ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHH
Confidence            4566777775 48999999999999999999999999998 999999999988888899999999999986       66


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i  189 (189)
                      +.++. . .    +.+++.++++.+++.+..++           ....||||||||++|+
T Consensus       435 I~~~~-~-~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialA  488 (592)
T PRK10790        435 VTLGR-D-I----SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALA  488 (592)
T ss_pred             HHhCC-C-C----CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence            66653 2 2    34556777777776543322           3356999999999874

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.84  E-value=4e-21  Score=176.41  Aligned_cols=120  Identities=18%  Similarity=0.165  Sum_probs=89.4

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHH---HhhhceeccchhH-------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGE---FLMRNGALPEERI-------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~-------  138 (189)
                      ....+++|.- +|++++|+|||||||||||++|+|+++.+|+|+++|.++...+..+   ++++++|+||++.       
T Consensus       300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~  379 (529)
T PRK15134        300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRL  379 (529)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcc
Confidence            3456666665 5999999999999999999999999963499999999886443322   3567999999862       


Q ss_pred             ---HHHHhcCCCC---CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCPH---AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~~---~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++....   ....+...++.++|+.++|. ...++++.+|||||||||+|+
T Consensus       380 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la  437 (529)
T PRK15134        380 NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIA  437 (529)
T ss_pred             cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHH
Confidence               3333321101   12223346788999999997 468999999999999999974

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.84  E-value=4.5e-21  Score=159.36  Aligned_cols=117  Identities=15%  Similarity=0.060  Sum_probs=88.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++....  ..++.++|++|++.        ++
T Consensus        15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~~~~q~~~~~~~~t~~en   92 (237)
T TIGR00968        15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIGFVFQHYALFKHLTVRDN   92 (237)
T ss_pred             eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEEEEecChhhccCCcHHHH
Confidence            444555544 59999999999999999999999999998 99999998875432  23568999999875        33


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+.... ........+.+.++++.+++....++.+.+||+||+||++|+
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la  142 (237)
T TIGR00968        93 IAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALA  142 (237)
T ss_pred             HHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH
Confidence            3322110 111122345678899999998888999999999999999874

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.84  E-value=5.8e-21  Score=174.07  Aligned_cols=119  Identities=16%  Similarity=0.071  Sum_probs=89.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCCCCCchHH-HhhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~-------  138 (189)
                      ..++++|.- +|++++|+|||||||||||++|+|+++|  + |+|.++|.++...+..+ +++.++||||++.       
T Consensus        16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   95 (500)
T TIGR02633        16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSV   95 (500)
T ss_pred             eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcH
Confidence            455666664 5999999999999999999999999986  5 99999999886544433 3457999999864       


Q ss_pred             -HHHHhcCCCC-----CChHHHHHHHHHHHhhcCCchhh-ccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCPH-----AAIREDISINLGPLEELSNLFKA-DLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~-----~~~~~d~~~v~~~L~~lgL~~~~-~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++....     ....+...++.++|+.++|.... ++++.+|||||||||+|+
T Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA  153 (500)
T TIGR02633        96 AENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA  153 (500)
T ss_pred             HHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHH
Confidence             3444432111     11223345788899999997544 678999999999999974

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=4.4e-21  Score=161.28  Aligned_cols=119  Identities=14%  Similarity=0.122  Sum_probs=87.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|     + |+|.++|.++...  ....+++.++|+||++.   
T Consensus        27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  106 (258)
T PRK14268         27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP  106 (258)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc
Confidence            455666664 6999999999999999999999999874     6 9999999887432  12345678999999864   


Q ss_pred             ----HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+.... .........++.++++.+++.    ...++.+.+|||||+||++|+
T Consensus       107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la  166 (258)
T PRK14268        107 MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA  166 (258)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence                333332110 111122334677899999883    456889999999999999974

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.84  E-value=6e-21  Score=157.73  Aligned_cols=118  Identities=19%  Similarity=0.184  Sum_probs=81.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+...+++.++|++|++.       +++
T Consensus        16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl   95 (236)
T cd03253          16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI   95 (236)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHH
Confidence            445555553 69999999999999999999999999998 999999988865555566778999999975       233


Q ss_pred             HhcCCCCCChHHHH-----HHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDI-----SINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~-----~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .+.... .......     ..+.+.++.+  ++....++.+.+||+|||||++|+
T Consensus        96 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la  149 (236)
T cd03253          96 RYGRPD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIA  149 (236)
T ss_pred             hhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence            222111 1111000     0122233333  344445667889999999999874

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.84  E-value=7e-21  Score=161.20  Aligned_cols=119  Identities=14%  Similarity=0.058  Sum_probs=89.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch---HHHhhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~---~~~~~~iG~v~Q~~~-------  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.....   ..+++.++|++|++.       
T Consensus        27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  106 (268)
T PRK10419         27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRK  106 (268)
T ss_pred             eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCC
Confidence            455666663 59999999999999999999999999998 999999988765433   234678999999863       


Q ss_pred             ---HHHHhcCC--CCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGC--PHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.+...  ......+...++.++|+.+++. ...++.+.+||+|||||++|+
T Consensus       107 t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~la  163 (268)
T PRK10419        107 TVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLA  163 (268)
T ss_pred             CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHH
Confidence               11111100  0111223345688999999996 578999999999999999874

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.84  E-value=6.3e-21  Score=174.07  Aligned_cols=118  Identities=14%  Similarity=0.144  Sum_probs=89.3

Q ss_pred             cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccchhH----------
Q 029723           72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI----------  138 (189)
Q Consensus        72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q~~~----------  138 (189)
                      ..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .+++.++||+|++.          
T Consensus       268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv  347 (501)
T PRK10762        268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSV  347 (501)
T ss_pred             cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcH
Confidence            45666654 48999999999999999999999999998 9999999888654432 34567999999851          


Q ss_pred             -HHHHhcCCCC-------CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCPH-------AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~-------~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.+.....       ....+..+++.++|+.++|. ...++++.+|||||||||+|+
T Consensus       348 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA  407 (501)
T PRK10762        348 KENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIA  407 (501)
T ss_pred             HHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHH
Confidence             2333321100       11123345688999999995 578999999999999999874

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.84  E-value=7.9e-21  Score=176.19  Aligned_cols=115  Identities=10%  Similarity=0.058  Sum_probs=93.6

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++.       +|
T Consensus       354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N  433 (574)
T PRK11160        354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDN  433 (574)
T ss_pred             cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHH
Confidence            4566777764 59999999999999999999999999998 999999999988888889999999999986       55


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc----------ccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADL----------LLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~----------~~~eLSGGqrq~~~~i  189 (189)
                      +.++.. .    .+.+++.++++.+++.+..+.          ....||||||||++|+
T Consensus       434 i~~~~~-~----~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialA  487 (574)
T PRK11160        434 LLLAAP-N----ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIA  487 (574)
T ss_pred             hhcCCC-c----cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHH
Confidence            555432 1    145567888888888765443          4567999999999974

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.84  E-value=5.5e-21  Score=180.77  Aligned_cols=115  Identities=10%  Similarity=-0.016  Sum_probs=89.6

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|+.++|+|+||||||||+++|+|+++|+ |+|.++|.|+...+..++++.|+||+|++.       +|
T Consensus       493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eN  572 (710)
T TIGR03796       493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDN  572 (710)
T ss_pred             CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHH
Confidence            4566677765 59999999999999999999999999998 999999999988888899999999999986       56


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++. +..    +.+++.++++..++.+..           ......||||||||++|+
T Consensus       573 i~l~~-~~~----~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLA  627 (710)
T TIGR03796       573 LTLWD-PTI----PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA  627 (710)
T ss_pred             hhCCC-CCC----CHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHH
Confidence            65542 222    344555666666554322           233456999999999974

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.84  E-value=4.6e-21  Score=154.82  Aligned_cols=107  Identities=8%  Similarity=-0.038  Sum_probs=82.4

Q ss_pred             CcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhc
Q 029723           75 RNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETG  144 (189)
Q Consensus        75 ~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g  144 (189)
                      ++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++....    .+.++|++|++.        +++.+.
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~~~~~~~~~~~tv~~~l~~~   94 (195)
T PRK13541         19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYIGHNLGLKLEMTVFENLKFW   94 (195)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEeccCCcCCCccCCHHHHHHHH
Confidence            55554 59999999999999999999999999998 99999998874321    345889988752        233221


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       145 ~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ....    ....++.++++.+++....++.+.+||+|||||++|+
T Consensus        95 ~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la  135 (195)
T PRK13541         95 SEIY----NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIA  135 (195)
T ss_pred             HHhc----ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHH
Confidence            1110    1234677888999998888999999999999999874

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.84  E-value=6.6e-21  Score=175.56  Aligned_cols=116  Identities=17%  Similarity=0.148  Sum_probs=91.7

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +...+++|.- +|++++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.++|++|++.       +|
T Consensus       346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N  425 (571)
T TIGR02203       346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANN  425 (571)
T ss_pred             ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHH
Confidence            4566777764 69999999999999999999999999998 999999999988888888999999999986       56


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccc-----------cccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLL-----------LCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~-----------~~eLSGGqrq~~~~i  189 (189)
                      +.++.....    +.+++.++++.+++.+...+.           -..||||||||++|+
T Consensus       426 i~~~~~~~~----~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLA  481 (571)
T TIGR02203       426 IAYGRTEQA----DRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA  481 (571)
T ss_pred             HhcCCCCCC----CHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence            655532122    355677777777765433322           246999999999974

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.84  E-value=5.9e-21  Score=180.76  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=89.3

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+..++++++-+ ||+++|+|+||||||||+|+|+|+++|+ |+|.++|.|+...+...+|+.||||+|++.       +
T Consensus       486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~e  565 (709)
T COG2274         486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRE  565 (709)
T ss_pred             cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHH
Confidence            456677777765 8999999999999999999999999998 999999999999999999999999999976       5


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCC-----------chhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSN-----------LFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL-----------~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      |+.++.. ..    ..+.+.+++...++           +......-..||||||||++|+
T Consensus       566 Ni~l~~p-~~----~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalA  621 (709)
T COG2274         566 NIALGNP-EA----TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA  621 (709)
T ss_pred             HHhcCCC-CC----CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHH
Confidence            6555432 22    22333344333333           2233444557999999999974

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=6.8e-21  Score=160.07  Aligned_cols=119  Identities=16%  Similarity=0.144  Sum_probs=86.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|     + |+|.++|.++..  .....+++.++|+||++.   
T Consensus        27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~  106 (259)
T PRK14274         27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP  106 (259)
T ss_pred             eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc
Confidence            455566653 6999999999999999999999999873     4 999999998752  223455678999999864   


Q ss_pred             ----HHHHhcCCCC-C-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~-~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+..... . ...+...++.++++.+++.    ...++.+.+||+|||||++|+
T Consensus       107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la  167 (259)
T PRK14274        107 QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA  167 (259)
T ss_pred             cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence                3333321111 1 1122334577888888884    246889999999999999874

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=4.9e-21  Score=163.79  Aligned_cols=118  Identities=13%  Similarity=0.079  Sum_probs=87.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++     |+ |+|.++|.++..  .....+++.++|+||++.   
T Consensus        54 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~  133 (285)
T PRK14254         54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP  133 (285)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCc
Confidence            455666664 699999999999999999999999986     56 999999988743  233455678999999864   


Q ss_pred             ----HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+.... ... .....++.++++.++|.    ...++++.+||||||||++|+
T Consensus       134 ~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA  192 (285)
T PRK14254        134 KSIYDNVAYGLKIQGYD-GDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA  192 (285)
T ss_pred             CCHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence                333322110 111 12345678899999884    356889999999999999874

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.83  E-value=8.5e-21  Score=173.80  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=90.0

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++.       +|
T Consensus       336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~N  415 (529)
T TIGR02857       336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN  415 (529)
T ss_pred             ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHH
Confidence            4566666665 59999999999999999999999999998 999999999988888889999999999985       56


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++... .    ..+++.++++.+++.+..           .....+||||||||++|+
T Consensus       416 i~~~~~~-~----~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~la  470 (529)
T TIGR02857       416 IRLARPD-A----SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALA  470 (529)
T ss_pred             HhccCCC-C----CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHH
Confidence            6554321 1    234556666666654432           234567999999999874

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.83  E-value=3e-21  Score=158.60  Aligned_cols=112  Identities=16%  Similarity=0.090  Sum_probs=85.6

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.+++.++...   . .+.++|+||++.        ++
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~~~~q~~~~~~~~t~~~~   90 (223)
T TIGR03740        15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIGSLIESPPLYENLTAREN   90 (223)
T ss_pred             EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEEEEcCCCCccccCCHHHH
Confidence            44556665 469999999999999999999999999998 9999999876421   1 257999999864        22


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+..... .  ....++.++++.++|....++.+.+||+||+||++|+
T Consensus        91 ~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~la  136 (223)
T TIGR03740        91 LKVHTTLL-G--LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIA  136 (223)
T ss_pred             HHHHHHHc-C--CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHH
Confidence            22211000 0  1235678899999999888999999999999999874

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=8.4e-21  Score=173.44  Aligned_cols=119  Identities=18%  Similarity=0.224  Sum_probs=88.7

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-CC-ccEEEeecCCCCCch-HHHhhhceeccchhH--------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI--------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-p~-G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~~--------  138 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++ |+ |+|.++|.++..... ..+++.++|++|++.        
T Consensus       277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~  356 (506)
T PRK13549        277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM  356 (506)
T ss_pred             cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCC
Confidence            455666665 599999999999999999999999998 46 999999988754333 234557999999851        


Q ss_pred             ---HHHHhcCC---CC---CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGC---PH---AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~---~~---~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++..   ..   ....+...++.++|+.++|. ...++++.+|||||||||+|+
T Consensus       357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA  417 (506)
T PRK13549        357 GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA  417 (506)
T ss_pred             CHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence               23333211   00   11123345688999999996 468999999999999999874

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.83  E-value=8.9e-21  Score=155.31  Aligned_cols=114  Identities=14%  Similarity=0.023  Sum_probs=80.8

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HHHhhhceeccchhH-----
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERI-----  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~~~~~iG~v~Q~~~-----  138 (189)
                      ....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++.....    ..+++.++|++|++.     
T Consensus        15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t   94 (218)
T cd03290          15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNAT   94 (218)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccccc
Confidence            3556667664 69999999999999999999999999998 999999987754321    234567999999974     


Q ss_pred             --HHHHhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.+...  .    ...++.++++.+++...           .+.++.+||+|||||++|+
T Consensus        95 ~~~nl~~~~~--~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la  152 (218)
T cd03290          95 VEENITFGSP--F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA  152 (218)
T ss_pred             HHHHHhhcCc--C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence              23322211  1    11223445555555332           3467899999999999874

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.83  E-value=5.4e-21  Score=180.88  Aligned_cols=116  Identities=15%  Similarity=0.062  Sum_probs=90.3

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|+.++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++.       +|
T Consensus       488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN  567 (708)
T TIGR01193       488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN  567 (708)
T ss_pred             cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence            4566777765 59999999999999999999999999998 999999999988888899999999999976       66


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCch-----------hhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-----------~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++..+..    +.+++.++++..++.+           ........||||||||++|+
T Consensus       568 i~l~~~~~~----~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialA  623 (708)
T TIGR01193       568 LLLGAKENV----SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALA  623 (708)
T ss_pred             HhccCCCCC----CHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHH
Confidence            766533322    2344555555555433           22333456999999999974

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=9e-21  Score=158.60  Aligned_cols=119  Identities=16%  Similarity=0.160  Sum_probs=86.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc--C---C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~--p---~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++  |   + |+|.++|.++...  ....+++.++|+||++.   
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   98 (252)
T PRK14256         19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFP   98 (252)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCC
Confidence            455566653 699999999999999999999999986  3   5 9999999987532  23345678999999864   


Q ss_pred             -----HHHHhcCCCC--CChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723          139 -----RAVETGGCPH--AAIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -----~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i  189 (189)
                           +++.++....  ....+..+++.++++.+++..    ..+..+.+||+|||||++|+
T Consensus        99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la  160 (252)
T PRK14256         99 AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA  160 (252)
T ss_pred             cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence                 3333321111  112223456788899999853    45778999999999999874

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=8.6e-21  Score=158.38  Aligned_cols=119  Identities=16%  Similarity=0.142  Sum_probs=86.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ..++++|.- +|++++|+|+|||||||||++|+|++++     + |+|.++|.++..  .....+++.++|++|++.   
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14240         18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP   97 (250)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc
Confidence            556666664 5999999999999999999999998762     5 999999998753  223355678999999864   


Q ss_pred             ----HHHHhcCCCC-C-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~-~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++.... . ......+++.++++.+++.    ...++++.+||+|||||++|+
T Consensus        98 ~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  158 (250)
T PRK14240         98 MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA  158 (250)
T ss_pred             ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence                3333321111 1 1122345677888888864    346888999999999999974

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.83  E-value=8.1e-21  Score=174.40  Aligned_cols=120  Identities=11%  Similarity=0.083  Sum_probs=89.1

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCCchHH---Hh-hhceeccchhH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~~~~~---~~-~~iG~v~Q~~~  138 (189)
                      .+..+++|.- +|++++|+|||||||||||++|+|+++|     + |+|.++|.++......+   .+ +.+|||||++.
T Consensus        23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~  102 (529)
T PRK15134         23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM  102 (529)
T ss_pred             eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence            3556667764 5999999999999999999999999986     6 99999999886544332   22 47999999863


Q ss_pred             ----------HHHHhcC--CCCCChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723          139 ----------RAVETGG--CPHAAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----------~~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i  189 (189)
                                +++.+..  .......+...++.++|+.++|..   ..++++.+|||||||||+|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iA  168 (529)
T PRK15134        103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIA  168 (529)
T ss_pred             hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHH
Confidence                      1121110  001122334567889999999974   36889999999999999974

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.83  E-value=1e-20  Score=161.44  Aligned_cols=114  Identities=14%  Similarity=0.127  Sum_probs=91.4

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ....+++|.- +|++++|+|+|||||||||++|+|++++.|+|.|+|.++......++++.|+|+||++.       +++
T Consensus        18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl   97 (275)
T cd03289          18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL   97 (275)
T ss_pred             cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHh
Confidence            3566777666 58999999999999999999999999845999999999977777778889999999985       233


Q ss_pred             HhcCCCCCChHHHHHHHHHHHhhcCCchhhcccccc-----------CChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-----------SGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~e-----------LSGGqrq~~~~i  189 (189)
                      ...  ...    ..+++.++++.++|....++++..           ||+|||||++|+
T Consensus        98 ~~~--~~~----~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~La  150 (275)
T cd03289          98 DPY--GKW----SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLA  150 (275)
T ss_pred             hhc--cCC----CHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence            211  111    234677889999998888888876           999999999874

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.83  E-value=9.6e-21  Score=170.41  Aligned_cols=121  Identities=13%  Similarity=0.109  Sum_probs=101.8

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH-------
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI-------  138 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~-------  138 (189)
                      ..++.+++|.-+ |||.+|+|.|||||||||++|.|+++|+ |+|.|+|+.+.-.++.+ ++..||+|+|.+.       
T Consensus        17 ~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV   96 (501)
T COG3845          17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTV   96 (501)
T ss_pred             EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccch
Confidence            445666666654 9999999999999999999999999999 99999999987655555 4558999999976       


Q ss_pred             -HHHHhcCCC----CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCP----HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~----~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +|+.++...    ...++...+++.++.+++||.-..+.++.+||-||||||+|+
T Consensus        97 ~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIl  152 (501)
T COG3845          97 AENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL  152 (501)
T ss_pred             hhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHH
Confidence             677777654    234466778899999999999889999999999999999874

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=8.7e-21  Score=160.18  Aligned_cols=120  Identities=14%  Similarity=0.061  Sum_probs=87.2

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH--
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--  138 (189)
                      ...++++|.- +|++++|+|+|||||||||++|+|+++|     + |+|.++|.++...  ....+++.++|+||++.  
T Consensus        22 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  101 (261)
T PRK14263         22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF  101 (261)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc
Confidence            3455556655 5999999999999999999999999986     5 9999999987532  22345678999999864  


Q ss_pred             -----HHHHhcCCCCCChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723          139 -----RAVETGGCPHAAIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -----~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i  189 (189)
                           +++.++............++.++|+.++|..    ..++.+.+||+||+||++|+
T Consensus       102 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la  161 (261)
T PRK14263        102 SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA  161 (261)
T ss_pred             cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence                 3333332111111123456788999998853    34677899999999999874

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.3e-20  Score=172.02  Aligned_cols=119  Identities=19%  Similarity=0.118  Sum_probs=88.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccchhH---------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI---------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q~~~---------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .+++.++|++|++.         
T Consensus       268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t  347 (501)
T PRK11288        268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHS  347 (501)
T ss_pred             cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCC
Confidence            345556554 59999999999999999999999999998 9999999887543333 34568999999862         


Q ss_pred             --HHHHhcCCCC-------CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCPH-------AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~~-------~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.++....       .......+.+.++|+.+++. ...++++.+|||||||||+|+
T Consensus       348 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la  408 (501)
T PRK11288        348 VADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILG  408 (501)
T ss_pred             HHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHH
Confidence              3333322111       01122345678899999994 578999999999999999874

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.4e-20  Score=157.43  Aligned_cols=119  Identities=17%  Similarity=0.105  Sum_probs=87.2

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|     + |+|.++|.++...  ....+++.++|+||++.   
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   98 (251)
T PRK14270         19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP   98 (251)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence            45566666 46999999999999999999999999874     5 9999999988532  22345678999999864   


Q ss_pred             ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+.... .. ...+...++.++++.+++.    ...++.+.+||+|||||++|+
T Consensus        99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  159 (251)
T PRK14270         99 MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIA  159 (251)
T ss_pred             CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence                344332111 11 1122345677889999874    356889999999999999874

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.83  E-value=1.3e-20  Score=178.00  Aligned_cols=115  Identities=19%  Similarity=0.154  Sum_probs=90.2

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|++++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++.       +|
T Consensus       479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eN  558 (694)
T TIGR03375       479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN  558 (694)
T ss_pred             cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHH
Confidence            4566777765 59999999999999999999999999998 999999999988888899999999999986       56


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++.. ..    +.+++.++++.+++.+..           ......||||||||++|+
T Consensus       559 i~~~~~-~~----~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA  613 (694)
T TIGR03375       559 IALGAP-YA----DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA  613 (694)
T ss_pred             HhCCCC-CC----CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence            655432 12    344556666666554432           233457999999999974

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.83  E-value=9.1e-21  Score=160.10  Aligned_cols=115  Identities=14%  Similarity=0.097  Sum_probs=84.2

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEE-----------EeecCCCCCchHHHh--hhceeccch
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFL--MRNGALPEE  136 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~-----------i~g~di~~~~~~~~~--~~iG~v~Q~  136 (189)
                      +..++++..+|++++|+|||||||||||++|+|+++|+ |+|.           +++.++.......++  ..++|++|.
T Consensus        16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~   95 (255)
T cd03236          16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQY   95 (255)
T ss_pred             hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecch
Confidence            44455677789999999999999999999999999998 9996           667766432221121  246787776


Q ss_pred             hHH-------HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          137 RIR-------AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       137 ~~~-------~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ...       ++...    +........+.++++.++|....++.+.+||+|||||++|+
T Consensus        96 ~~~~~~~~~~~i~~~----l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la  151 (255)
T cd03236          96 VDLIPKAVKGKVGEL----LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIA  151 (255)
T ss_pred             hccCchHHHHHHHHH----hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            431       11111    11123446788999999998888999999999999999874

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.6e-20  Score=156.85  Aligned_cols=119  Identities=16%  Similarity=0.152  Sum_probs=84.8

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC------CccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p------~G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|      +|+|.++|.++..  .....+++.++|++|++.   
T Consensus        19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   98 (252)
T PRK14272         19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFP   98 (252)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCc
Confidence            45666666 46999999999999999999999999875      3999999988753  223355678999999864   


Q ss_pred             -----HHHHhcCC-CCC-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 -----RAVETGGC-PHA-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -----~~i~~g~~-~~~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                           +++.++.. ... ...+..+++.++++.+++.    ...++++.+||||||||++|+
T Consensus        99 ~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  160 (252)
T PRK14272         99 TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA  160 (252)
T ss_pred             CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence                 33332211 111 1112234566667777653    356888999999999999874

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.83  E-value=1.2e-20  Score=172.81  Aligned_cols=120  Identities=14%  Similarity=0.047  Sum_probs=86.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe-ecC---CCCCc---hHHHhhhceeccchhH--
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TND---IFTKE---DGEFLMRNGALPEERI--  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~-g~d---i~~~~---~~~~~~~iG~v~Q~~~--  138 (189)
                      .+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++ +.+   +....   ...+++.++|+||++.  
T Consensus       298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~  377 (520)
T TIGR03269       298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY  377 (520)
T ss_pred             eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence            3556667654 59999999999999999999999999998 999996 543   22211   1234567999999864  


Q ss_pred             ------HHHHhcCCCCCChHHHHHHHHHHHhhcCCch-----hhccccccCChHHHHhhhcC
Q 029723          139 ------RAVETGGCPHAAIREDISINLGPLEELSNLF-----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ------~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-----~~~~~~~eLSGGqrq~~~~i  189 (189)
                            +++.+.............++.++|+.++|..     ..++++.+|||||||||+|+
T Consensus       378 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~la  439 (520)
T TIGR03269       378 PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALA  439 (520)
T ss_pred             CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHH
Confidence                  3333211111111223456788999999964     57899999999999999974

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.6e-20  Score=158.72  Aligned_cols=119  Identities=10%  Similarity=0.043  Sum_probs=85.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++     |+ |+|.++|.++...  ....+++.++|++|++.   
T Consensus        36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  115 (268)
T PRK14248         36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP  115 (268)
T ss_pred             eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc
Confidence            445555553 699999999999999999999999864     56 9999999887532  22345678999999864   


Q ss_pred             ----HHHHhcCCCC-C-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~-~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++.... . ........+.++++.+++.    ...++.+.+||||||||++|+
T Consensus       116 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la  176 (268)
T PRK14248        116 KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA  176 (268)
T ss_pred             ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence                3333321111 1 1112234567788888874    356889999999999999874

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.83  E-value=1.6e-20  Score=171.25  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=89.7

Q ss_pred             CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEeecCCCCCch-HHHhhhceeccchhH-------
Q 029723           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTKED-GEFLMRNGALPEERI-------  138 (189)
Q Consensus        70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~~-------  138 (189)
                      ....+++|. .+|++++|+|||||||||||++|+|+++| + |+|.++|.++..... ..+++.++|++|++.       
T Consensus       274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~  353 (500)
T TIGR02633       274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI  353 (500)
T ss_pred             cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCC
Confidence            355667776 46999999999999999999999999985 6 999999988854332 345668999999952       


Q ss_pred             ----HHHHhcCCC------CCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP------HAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~------~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++...      .........++.++|+.+++.. ..++++.+|||||||||+|+
T Consensus       354 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la  415 (500)
T TIGR02633       354 LGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA  415 (500)
T ss_pred             CCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence                233222110      0111223456889999999964 57999999999999999974

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.7e-20  Score=156.70  Aligned_cols=119  Identities=15%  Similarity=0.088  Sum_probs=85.8

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++     |+ |+|.++|.++...  ...++++.++|++|++.   
T Consensus        19 ~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   98 (251)
T PRK14251         19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP   98 (251)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC
Confidence            44555555 3699999999999999999999999986     36 9999999887431  22345668999999864   


Q ss_pred             ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++... .. .......++.++++.+++.    ...++.+.+||+|||||++|+
T Consensus        99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la  159 (251)
T PRK14251         99 FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA  159 (251)
T ss_pred             CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence                333332110 01 1111234677888988884    356889999999999999874

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.8e-20  Score=158.34  Aligned_cols=119  Identities=12%  Similarity=0.101  Sum_probs=85.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++     |+ |+|.++|.++..  ....++++.++|++|++.   
T Consensus        25 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  104 (264)
T PRK14243         25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP  104 (264)
T ss_pred             EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc
Confidence            455566664 699999999999999999999999976     36 999999988742  233456678999999854   


Q ss_pred             ----HHHHhcCCCCCChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++...........+++.++++.+++.    ...++.+.+||||||||++|+
T Consensus       105 ~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la  163 (264)
T PRK14243        105 KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA  163 (264)
T ss_pred             ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence                333332211100112234566777887774    246788999999999999874

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.9e-20  Score=158.42  Aligned_cols=119  Identities=13%  Similarity=0.033  Sum_probs=87.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++     |+ |+|.++|.++..  .....+++.++|+||++.   
T Consensus        35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~  114 (267)
T PRK14237         35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA  114 (267)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc
Confidence            455556655 599999999999999999999999986     46 999999988743  123345678999999864   


Q ss_pred             ----HHHHhcCCC-C-CChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-H-AAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~-~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++... . ........++.++|+.++|.    ...++++.+||+||+||++|+
T Consensus       115 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la  175 (267)
T PRK14237        115 KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA  175 (267)
T ss_pred             ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence                344332111 1 11122345677889999884    356889999999999999874

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.83  E-value=2.1e-20  Score=172.77  Aligned_cols=117  Identities=19%  Similarity=0.196  Sum_probs=90.7

Q ss_pred             CCCCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------
Q 029723           68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (189)
Q Consensus        68 ~~~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------  138 (189)
                      ..+..++++|. ++|+.++|+||+|||||||+++|++++.|+ |+|.++|.|+...+...+++.|+||+|++.       
T Consensus       341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~  420 (567)
T COG1132         341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR  420 (567)
T ss_pred             CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHH
Confidence            44566777774 469999999999999999999999999997 999999999999999999999999999985       


Q ss_pred             HHHHhcCCCCCChHHHHHHHHHH---------Hhhc--CCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHAAIREDISINLGP---------LEEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~~~~~d~~~v~~~---------L~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +|+.++... ..    .+++.++         ++.+  |++.........||||||||++|+
T Consensus       421 ~NI~~g~~~-at----~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiA  477 (567)
T COG1132         421 ENIALGRPD-AT----DEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIA  477 (567)
T ss_pred             HHHhcCCCC-CC----HHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHH
Confidence            677777543 21    2233333         3444  333333444557999999999974

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.83  E-value=1.1e-20  Score=179.17  Aligned_cols=115  Identities=13%  Similarity=0.105  Sum_probs=90.6

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++.       +|
T Consensus       495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreN  574 (711)
T TIGR00958       495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVREN  574 (711)
T ss_pred             ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHH
Confidence            4566777765 49999999999999999999999999998 999999999988888889999999999986       66


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++... .    +.+++.++++..++.+..           ......||||||||++|+
T Consensus       575 I~~g~~~-~----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA  629 (711)
T TIGR00958       575 IAYGLTD-T----PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA  629 (711)
T ss_pred             HhcCCCC-C----CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence            6665321 1    234556666666654332           223357999999999974

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.2e-20  Score=157.56  Aligned_cols=119  Identities=17%  Similarity=0.168  Sum_probs=86.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      +..+++|.- +|++++|+|+|||||||||++|+|+++|     + |+|.++|.++...  ...++++.++|+||++.   
T Consensus        18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14262         18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP   97 (250)
T ss_pred             eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence            455666664 5999999999999999999999999873     6 9999999887532  22345678999999864   


Q ss_pred             ----HHHHhcCCCC-C-ChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH-A-AIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~-~-~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++.... . ......+.+.++++.+++..    ..++.+.+||+||+||++|+
T Consensus        98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la  158 (250)
T PRK14262         98 MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA  158 (250)
T ss_pred             ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHH
Confidence                3333321111 1 11123445678888888853    46889999999999999874

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.82  E-value=7.3e-21  Score=153.56  Aligned_cols=117  Identities=17%  Similarity=0.149  Sum_probs=89.5

Q ss_pred             ccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC----------ch---HHHhhhceeccchh
Q 029723           73 LSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----------ED---GEFLMRNGALPEER  137 (189)
Q Consensus        73 ~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~----------~~---~~~~~~iG~v~Q~~  137 (189)
                      .-+++.. +|+++.|||.+||||||||+||.-+..|+ |.|.++|..|...          +.   ..+|.++++|||..
T Consensus        23 KGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~F  102 (256)
T COG4598          23 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHF  102 (256)
T ss_pred             cceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhc
Confidence            3444443 59999999999999999999999999999 9999999877421          11   22355899999997


Q ss_pred             H--------HHHHhcCCC--CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          138 I--------RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       138 ~--------~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +        +|+.-.-..  .....+..+++..+|.++||.+..+.+|..||||||||++|+
T Consensus       103 NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA  164 (256)
T COG4598         103 NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA  164 (256)
T ss_pred             chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence            7        222211111  122345677889999999999999999999999999999974

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.4e-20  Score=157.32  Aligned_cols=119  Identities=14%  Similarity=0.116  Sum_probs=86.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCCc--hHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++     |+ |+|.++|.++....  ...+++.++|+||++.   
T Consensus        20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~   99 (251)
T PRK14244         20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP   99 (251)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc
Confidence            455666663 699999999999999999999999986     45 99999998874322  2245678999999864   


Q ss_pred             ----HHHHhcCC-CCC--ChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGC-PHA--AIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~-~~~--~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+... ...  ........+.++++.++|..    ..++.+.+||+|||||++|+
T Consensus       100 ~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la  161 (251)
T PRK14244        100 KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA  161 (251)
T ss_pred             CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence                33333210 011  11223456778899999864    45778999999999999874

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2.7e-20  Score=156.89  Aligned_cols=119  Identities=18%  Similarity=0.176  Sum_probs=87.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee------cCCCCCchHHHhhhceeccchhH----
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT------NDIFTKEDGEFLMRNGALPEERI----  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g------~di~~~~~~~~~~~iG~v~Q~~~----  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|      .++......++++.++|++|++.    
T Consensus        25 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~  104 (257)
T PRK14246         25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPH  104 (257)
T ss_pred             eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCC
Confidence            456666664 69999999999999999999999999987 8777665      45543444556778999999864    


Q ss_pred             ----HHHHhcCCCC-C-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~-~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++.... . ...+...++.++++.+++.    ...++.+..||+|||||++|+
T Consensus       105 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la  165 (257)
T PRK14246        105 LSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA  165 (257)
T ss_pred             CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHH
Confidence                3333321111 1 1122345678899999985    356889999999999999874

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.82  E-value=2.2e-20  Score=171.03  Aligned_cols=118  Identities=17%  Similarity=0.120  Sum_probs=88.3

Q ss_pred             cccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH----------
Q 029723           72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI----------  138 (189)
Q Consensus        72 ~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~----------  138 (189)
                      ..+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.+++.++....... +++.|+|++|++.          
T Consensus       279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~  358 (510)
T PRK15439        279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPL  358 (510)
T ss_pred             ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcH
Confidence            4566666 459999999999999999999999999998 99999999886544433 3457999999741          


Q ss_pred             -HHHHhcC---CCC-CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGG---CPH-AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~---~~~-~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++....   ... .......+++.++|+.++|. ...++++.+||||||||++|+
T Consensus       359 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la  415 (510)
T PRK15439        359 AWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIA  415 (510)
T ss_pred             HHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHH
Confidence             2221110   000 11122345678899999997 678999999999999999874

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.3e-20  Score=176.51  Aligned_cols=120  Identities=16%  Similarity=0.118  Sum_probs=88.0

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC----------CCchHH---Hh-hhceec
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF----------TKEDGE---FL-MRNGAL  133 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~----------~~~~~~---~~-~~iG~v  133 (189)
                      .+..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.+++.++.          .....+   ++ +.||||
T Consensus        30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v  109 (623)
T PRK10261         30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI  109 (623)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence            4566677764 59999999999999999999999999998 99999876431          112222   22 479999


Q ss_pred             cchhH----------HHHHhcCCC--CCChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723          134 PEERI----------RAVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       134 ~Q~~~----------~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ||++.          +++.++...  .....+..+++.++|+.++|..   ..++++.+|||||||||+|+
T Consensus       110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA  180 (623)
T PRK10261        110 FQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIA  180 (623)
T ss_pred             EeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHH
Confidence            99862          344333211  1222334567889999999953   57899999999999999984

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.82  E-value=1.3e-20  Score=158.14  Aligned_cols=116  Identities=14%  Similarity=0.031  Sum_probs=85.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC----C-ccEEEeecCCCCCchHHHhhhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p----~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|    + |+|.++|.++..  ...+++.++|++|++.      
T Consensus        18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~--~~~~~~~i~~v~q~~~~~~~~~   95 (254)
T PRK10418         18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP--CALRGRKIATIMQNPRSAFNPL   95 (254)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc--cccccceEEEEecCCccccCcc
Confidence            455566653 6999999999999999999999999998    8 999999988742  1122357999999863      


Q ss_pred             ----HHHHhcCCCCCChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPHAAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++..... .........++.++++.++|..   ..++.+.+||+|||||++|+
T Consensus        96 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la  152 (254)
T PRK10418         96 HTMHTHARETCL-ALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA  152 (254)
T ss_pred             ccHHHHHHHHHH-HcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH
Confidence                11111000 0011123356888999999975   46889999999999999874

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.82  E-value=1.2e-20  Score=164.29  Aligned_cols=102  Identities=22%  Similarity=0.141  Sum_probs=80.6

Q ss_pred             EEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCC-CCChHHHH
Q 029723           86 IGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCP-HAAIREDI  155 (189)
Q Consensus        86 LiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~-~~~~~~d~  155 (189)
                      |+|||||||||||++|+|+++|+ |+|.++|.++.....  .++.++|+||++.        +++.++... .....+..
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~   78 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK   78 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence            68999999999999999999998 999999998854433  3568999999864        444443211 11122334


Q ss_pred             HHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          156 SINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       156 ~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++.++++.++|....++++.+||||||||++|+
T Consensus        79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvala  112 (325)
T TIGR01187        79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALA  112 (325)
T ss_pred             HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHH
Confidence            5788999999999889999999999999999974

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2e-20  Score=159.22  Aligned_cols=119  Identities=19%  Similarity=0.160  Sum_probs=87.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCCc-hHHHhhhceeccchhH----
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKE-DGEFLMRNGALPEERI----  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~~-~~~~~~~iG~v~Q~~~----  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|     + |+|.++|.++.... ...+++.++|+||++.    
T Consensus        36 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~  115 (276)
T PRK14271         36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPM  115 (276)
T ss_pred             EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCc
Confidence            455566654 6999999999999999999999999985     5 99999998875432 2345678999999864    


Q ss_pred             ---HHHHhcCCCC--CChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCPH--AAIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++....  ....+....+.++++.++|..    ..++.+.+||+|||||++|+
T Consensus       116 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA  175 (276)
T PRK14271        116 SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA  175 (276)
T ss_pred             cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence               3343332111  111223345677889998863    35788999999999999874

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2.7e-20  Score=155.32  Aligned_cols=119  Identities=16%  Similarity=0.128  Sum_probs=86.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC-CchHHHhhhceeccchhH----
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT-KEDGEFLMRNGALPEERI----  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~-~~~~~~~~~iG~v~Q~~~----  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|     + |+|.++|.++.. .+...+++.++|+||++.    
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~   97 (249)
T PRK14253         18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPM   97 (249)
T ss_pred             eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcc
Confidence            455566654 5999999999999999999999999885     4 999999988742 234456678999999864    


Q ss_pred             ---HHHHhcCCCC-CC-hHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCPH-AA-IREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~~-~~-~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++.... .. .....+++.++++.+++.    ...++.+.+||+|||||++|+
T Consensus        98 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  157 (249)
T PRK14253         98 SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA  157 (249)
T ss_pred             cHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence               3333321111 11 112234567788888874    356788999999999999874

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.82  E-value=3e-20  Score=155.14  Aligned_cols=119  Identities=14%  Similarity=0.010  Sum_probs=85.6

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhc--ccCC-ccEEEeecCCCCCchHHHhh-hceeccchhH-------
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gl--l~p~-G~I~i~g~di~~~~~~~~~~-~iG~v~Q~~~-------  138 (189)
                      ..++++|. .+|++++|+|+|||||||||++|+|+  ++|+ |+|.++|.++.......+.+ .++|++|++.       
T Consensus        22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~  101 (252)
T CHL00131         22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSN  101 (252)
T ss_pred             eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccH
Confidence            55666666 46999999999999999999999998  4677 99999999886554444333 5889999853       


Q ss_pred             -HHHHhcCCCC--------CChHHHHHHHHHHHhhcCCc-hhhccccc-cCChHHHHhhhcC
Q 029723          139 -RAVETGGCPH--------AAIREDISINLGPLEELSNL-FKADLLLC-ESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~--------~~~~~d~~~v~~~L~~lgL~-~~~~~~~~-eLSGGqrq~~~~i  189 (189)
                       +++.+.....        ....+...++.++|+.+++. ...++.+. .|||||+||++|+
T Consensus       102 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la  163 (252)
T CHL00131        102 ADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL  163 (252)
T ss_pred             HHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence             2222221100        01112235677899999997 46788887 4999999999874

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.7e-20  Score=160.39  Aligned_cols=119  Identities=17%  Similarity=0.165  Sum_probs=85.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++     |+ |+|.++|.++...  ....+++.++|++|++.   
T Consensus        54 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  133 (286)
T PRK14275         54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP  133 (286)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCc
Confidence            455666664 699999999999999999999999864     37 9999999887432  22345678999999864   


Q ss_pred             ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++... .. ......+++.++++.+++.    ...++.+.+||||||||++|+
T Consensus       134 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA  194 (286)
T PRK14275        134 KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA  194 (286)
T ss_pred             cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence                333332111 01 1122345677888888873    456889999999999999874

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2.8e-20  Score=155.29  Aligned_cols=119  Identities=17%  Similarity=0.113  Sum_probs=87.1

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|++.     |+ |+|.++|.++...  +..++++.++|+||++.   
T Consensus        18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14266         18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP   97 (250)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc
Confidence            45666666 4699999999999999999999999864     36 9999999887532  23455678999999864   


Q ss_pred             ----HHHHhcCCCC--CChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH--AAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+.....  .......+++.++++.+++.    ...++.+.+||+|||||++|+
T Consensus        98 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la  158 (250)
T PRK14266         98 KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA  158 (250)
T ss_pred             chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence                3333321111  11122345677889998874    345788999999999999874

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.82  E-value=2e-20  Score=157.04  Aligned_cols=95  Identities=19%  Similarity=0.156  Sum_probs=73.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAA  150 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~~  150 (189)
                      +|++++|+|||||||||||++|+|+++|+ |+|.+++.            .|+|++|++.        +++........ 
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-   90 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQYIKADYEGTVRDLLSSITKDFY-   90 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecccccCCCCCCHHHHHHHHhhhcc-
Confidence            69999999999999999999999999998 99998874            4788888753        22221110000 


Q ss_pred             hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          151 IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       151 ~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        .....+.++++.++|....++++.+||||||||++|+
T Consensus        91 --~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia  127 (246)
T cd03237          91 --THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIA  127 (246)
T ss_pred             --ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHH
Confidence              1123467789999998888999999999999999974

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.82  E-value=2e-20  Score=171.40  Aligned_cols=119  Identities=15%  Similarity=0.115  Sum_probs=85.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc--cCC-ccEEEee-----------------------cCCC----
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVT-----------------------NDIF----  119 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-G~I~i~g-----------------------~di~----  119 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|++  +|+ |+|.+++                       .++.    
T Consensus        15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~   94 (520)
T TIGR03269        15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEV   94 (520)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccch
Confidence            456666664 59999999999999999999999997  687 9999872                       2221    


Q ss_pred             ---CCch---HHHhhhceeccchh-H--------HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHH
Q 029723          120 ---TKED---GEFLMRNGALPEER-I--------RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNL  183 (189)
Q Consensus       120 ---~~~~---~~~~~~iG~v~Q~~-~--------~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqr  183 (189)
                         ....   ..+++.++|+||++ .        +++.++.. ......+...++.++|+.++|....++++.+||||||
T Consensus        95 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~  174 (520)
T TIGR03269        95 DFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEK  174 (520)
T ss_pred             hhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHH
Confidence               1011   23456799999972 2        33333211 1112233456788999999998888999999999999


Q ss_pred             HhhhcC
Q 029723          184 QTISFI  189 (189)
Q Consensus       184 q~~~~i  189 (189)
                      |||+|+
T Consensus       175 qrv~iA  180 (520)
T TIGR03269       175 QRVVLA  180 (520)
T ss_pred             HHHHHH
Confidence            999974

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2.4e-20  Score=156.14  Aligned_cols=119  Identities=13%  Similarity=0.106  Sum_probs=85.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc--C---C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~--p---~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|++.  |   + |+|.++|.++...  ...++++.++|++|++.   
T Consensus        21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~  100 (253)
T PRK14261         21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP  100 (253)
T ss_pred             eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCc
Confidence            445555554 599999999999999999999999875  2   4 9999999988543  23455678999999874   


Q ss_pred             ----HHHHhcCCCC--CChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH--AAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++....  ........++.++++.+++.    ...++.+.+||+|||||++|+
T Consensus       101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  161 (253)
T PRK14261        101 KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA  161 (253)
T ss_pred             ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHH
Confidence                3333321111  01122344677788888774    346889999999999999874

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.82  E-value=2.3e-20  Score=173.11  Aligned_cols=115  Identities=18%  Similarity=0.162  Sum_probs=87.9

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|++++|+|+||||||||+++|+|+++|+ |.|.++|.++...+..++++.|+||+|++.       +|
T Consensus       349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~N  428 (588)
T PRK13657        349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDN  428 (588)
T ss_pred             ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHH
Confidence            3556666665 58999999999999999999999999998 999999999988888889999999999985       56


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCch-----------hhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-----------~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++. +..    +.+++.++++.+++.+           ........||||||||++|+
T Consensus       429 i~~~~-~~~----~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA  483 (588)
T PRK13657        429 IRVGR-PDA----TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA  483 (588)
T ss_pred             HhcCC-CCC----CHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence            65543 222    2334445555554432           22233456999999999974

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2.5e-20  Score=155.79  Aligned_cols=119  Identities=15%  Similarity=0.099  Sum_probs=85.5

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhc---ccC--C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKF---LRD--K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gl---l~p--~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+   ++|  + |+|.++|.++...  ....+++.++|+||++.   
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   97 (250)
T PRK14245         18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP   97 (250)
T ss_pred             EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc
Confidence            44555555 36999999999999999999999997   454  4 9999999988542  22355678999999864   


Q ss_pred             ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++... .. .......++.++++.++|..    ..++.+.+||+|||||++|+
T Consensus        98 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  158 (250)
T PRK14245         98 KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA  158 (250)
T ss_pred             ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence                333322111 01 11123456788899998853    46788999999999999874

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.4e-20  Score=157.25  Aligned_cols=119  Identities=16%  Similarity=0.123  Sum_probs=84.8

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++     |+ |+|.++|.++..  ....++++.++|+||++.   
T Consensus        39 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~  118 (271)
T PRK14238         39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP  118 (271)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc
Confidence            45555655 3699999999999999999999999987     57 999999988742  223455678999999964   


Q ss_pred             ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcC----CchhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HA-AIREDISINLGPLEELS----NLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lg----L~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++... .. ........+.++++.++    +....++++.+||+|||||++|+
T Consensus       119 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~la  179 (271)
T PRK14238        119 KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA  179 (271)
T ss_pred             ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHH
Confidence                344332111 11 11112344566777764    34456889999999999999874

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.4e-20  Score=157.59  Aligned_cols=119  Identities=12%  Similarity=0.088  Sum_probs=84.1

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|     + |+|.++|.++...  ....+++.++|+||++.   
T Consensus        35 ~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~  114 (274)
T PRK14265         35 ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP  114 (274)
T ss_pred             EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc
Confidence            45556665 46999999999999999999999999862     4 9999999887532  22345678999999864   


Q ss_pred             ----HHHHhcCCCCCChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++.............+.++++.+++.    ...++++.+||+|||||++|+
T Consensus       115 ~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA  173 (274)
T PRK14265        115 KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA  173 (274)
T ss_pred             ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence                233322111000111234456678887763    456789999999999999874

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2.8e-20  Score=156.41  Aligned_cols=119  Identities=16%  Similarity=0.102  Sum_probs=86.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|     + |+|.++|.++..  .....+++.++|++|++.   
T Consensus        22 il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  101 (259)
T PRK14260         22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP  101 (259)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC
Confidence            445566663 6999999999999999999999999874     4 999999988743  223345678999999864   


Q ss_pred             ----HHHHhcCCCC--CChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH--AAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++....  ....+..+++.++++.+++.    ...++.+.+||+|||||++|+
T Consensus       102 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  162 (259)
T PRK14260        102 MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA  162 (259)
T ss_pred             ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence                3333221110  11122345677888888873    357889999999999999874

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=4.1e-20  Score=154.52  Aligned_cols=119  Identities=16%  Similarity=0.113  Sum_probs=85.9

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC------ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK------YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~------G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+      |+|.++|.++...  ....+++.++|+||++.   
T Consensus        19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   98 (251)
T PRK14249         19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP   98 (251)
T ss_pred             EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc
Confidence            44555555 469999999999999999999999999884      9999999887532  23355678999999975   


Q ss_pred             ----HHHHhcCCCC-CCh-HHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH-AAI-REDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~-~~~-~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+..... ... .+....+.++++.+++.    ...++.+.+||+|||||++|+
T Consensus        99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la  159 (251)
T PRK14249         99 KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA  159 (251)
T ss_pred             CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence                3333321110 111 11234566778888764    356889999999999999874

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2.7e-20  Score=169.26  Aligned_cols=121  Identities=17%  Similarity=0.179  Sum_probs=94.3

Q ss_pred             CCCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH----
Q 029723           64 YFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (189)
Q Consensus        64 ~~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----  138 (189)
                      +|..+.+....++|.-+ |+.+||+|+|||||||+||+|.+++..+|+|.|+|+++...+...+|+.||||||+..    
T Consensus       360 ~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd  439 (591)
T KOG0057|consen  360 SYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND  439 (591)
T ss_pred             EeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccch
Confidence            44444556677777765 9999999999999999999999999966999999999999999999999999999965    


Q ss_pred             ---HHHHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i  189 (189)
                         .|+.+|. +..    ..+++.+++++.++.+..           ..+...|||||||||+|+
T Consensus       440 TIl~NI~YGn-~sa----s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsla  499 (591)
T KOG0057|consen  440 TILYNIKYGN-PSA----SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLA  499 (591)
T ss_pred             hHHHHhhcCC-CCc----CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHH
Confidence               4555553 333    345566666776665433           334557999999999973

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.81  E-value=6e-20  Score=167.03  Aligned_cols=119  Identities=13%  Similarity=0.012  Sum_probs=87.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEeecCCCCC-chHHHhhhceeccchhHH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTK-EDGEFLMRNGALPEERIR-------  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g~di~~~-~~~~~~~~iG~v~Q~~~~-------  139 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|++++ + |+|.++|.++... ....+++.++|++|++..       
T Consensus       275 il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~  354 (490)
T PRK10938        275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTS  354 (490)
T ss_pred             EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCc
Confidence            455666654 5999999999999999999999999876 4 9999999876322 223455689999998631       


Q ss_pred             ---HHHhcCCC--CC--C-hHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          140 ---AVETGGCP--HA--A-IREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ---~i~~g~~~--~~--~-~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                         ++..+...  ..  . .....+++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la  413 (490)
T PRK10938        355 VRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV  413 (490)
T ss_pred             HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHH
Confidence               11111111  00  0 1223456889999999986 78999999999999999874

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.81  E-value=2.5e-20  Score=153.61  Aligned_cols=118  Identities=14%  Similarity=0.069  Sum_probs=90.3

Q ss_pred             cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----------H
Q 029723           72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----------R  139 (189)
Q Consensus        72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----------~  139 (189)
                      .+.++++- +|+++.|||.|||||||||++|+|-+.|+ |.|.|++.|++..+...+...++-|||+|.          +
T Consensus        22 l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieE  101 (263)
T COG1101          22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEE  101 (263)
T ss_pred             HhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHH
Confidence            33444433 58999999999999999999999999999 999999999998888888889999999986          4


Q ss_pred             HHHhcCCC----CCCh---HHHHHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCP----HAAI---REDISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~----~~~~---~~d~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      |+.+....    .+..   ..-.+...+.|+.+  +|++.++.++.-|||||||.++++
T Consensus       102 Nl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~  160 (263)
T COG1101         102 NLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL  160 (263)
T ss_pred             HHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence            54433221    1221   11223344555555  557788999999999999999874

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.81  E-value=6e-20  Score=153.31  Aligned_cols=119  Identities=14%  Similarity=0.087  Sum_probs=85.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc--cC---C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RD---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll--~p---~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|++  +|   + |+|.++|.++...  ....+++.++|+||++.   
T Consensus        20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   99 (252)
T PRK14239         20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP   99 (252)
T ss_pred             eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc
Confidence            445555554 59999999999999999999999985  35   4 9999999887432  22345678999999864   


Q ss_pred             ----HHHHhcCC-CCCC-hHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGC-PHAA-IREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~-~~~~-~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++.. .... ......++.++++.+++.    ...++.+.+||+|||||++|+
T Consensus       100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  160 (252)
T PRK14239        100 MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA  160 (252)
T ss_pred             CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence                33333211 1111 112235677788888874    356889999999999999874

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.81  E-value=6e-20  Score=169.28  Aligned_cols=118  Identities=14%  Similarity=0.064  Sum_probs=90.9

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCC
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~  147 (189)
                      +...+++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++|++|++...-.+-...
T Consensus       337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n  416 (547)
T PRK10522        337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE  416 (547)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence            3566667664 58999999999999999999999999998 999999999987778888899999999986322221111


Q ss_pred             CCChHHHHHHHHHHHhhcCCchhhccc-----cccCChHHHHhhhcC
Q 029723          148 HAAIREDISINLGPLEELSNLFKADLL-----LCESGGGNLQTISFI  189 (189)
Q Consensus       148 ~~~~~~d~~~v~~~L~~lgL~~~~~~~-----~~eLSGGqrq~~~~i  189 (189)
                      .  ...+.+.+.++++.+++.......     ...||||||||++|+
T Consensus       417 ~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lA  461 (547)
T PRK10522        417 G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALL  461 (547)
T ss_pred             c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHH
Confidence            1  112455678889999887543321     358999999999874

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.81  E-value=4.9e-20  Score=149.84  Aligned_cols=107  Identities=21%  Similarity=0.225  Sum_probs=79.3

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      ....+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++.       ++
T Consensus        22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~  101 (207)
T cd03369          22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN  101 (207)
T ss_pred             ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHH
Confidence            3555666664 69999999999999999999999999998 999999998865555566778999999874       22


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+.  ...    ....+.++++       .++.+.+||+||+||++|+
T Consensus       102 l~~~--~~~----~~~~~~~~l~-------~~~~~~~LS~G~~qrv~la  137 (207)
T cd03369         102 LDPF--DEY----SDEEIYGALR-------VSEGGLNLSQGQRQLLCLA  137 (207)
T ss_pred             hccc--CCC----CHHHHHHHhh-------ccCCCCcCCHHHHHHHHHH
Confidence            2111  101    1222334443       3578899999999999874

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.81  E-value=4.4e-20  Score=170.37  Aligned_cols=115  Identities=19%  Similarity=0.193  Sum_probs=88.3

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|+.++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.++|+||++.       +|
T Consensus       354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~N  433 (576)
T TIGR02204       354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMEN  433 (576)
T ss_pred             ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHH
Confidence            3455666655 69999999999999999999999999998 999999999988888888899999999985       66


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++.. ..    +.+++.++++.+++.+.           .......||||||||++|+
T Consensus       434 i~~~~~-~~----~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~la  488 (576)
T TIGR02204       434 IRYGRP-DA----TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIA  488 (576)
T ss_pred             HhcCCC-CC----CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHH
Confidence            655432 12    23455556666555332           2233456999999999874

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.81  E-value=7.6e-20  Score=166.31  Aligned_cols=122  Identities=13%  Similarity=0.056  Sum_probs=101.8

Q ss_pred             CCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH------
Q 029723           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------  138 (189)
Q Consensus        68 ~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~------  138 (189)
                      ...+..+++|.-. ||+++|+|.||||||||+|+|+|.++|+ |+|.++|+.+...++.+. ...|..|+|+.+      
T Consensus        20 gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~Ls   99 (500)
T COG1129          20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLS   99 (500)
T ss_pred             CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCcc
Confidence            3456677777764 9999999999999999999999999999 999999999876666554 458999999986      


Q ss_pred             --HHHHhcCCCCC-----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~~~-----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +|++++..+..     .++...+++.++|+.+++....+.++.+||.||||.|+|+
T Consensus       100 VaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIA  157 (500)
T COG1129         100 VAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIA  157 (500)
T ss_pred             HHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHH
Confidence              78888876542     3356677888999999986458999999999999999874

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.81  E-value=6.1e-20  Score=155.67  Aligned_cols=119  Identities=15%  Similarity=0.094  Sum_probs=86.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|     + |+|.++|.++...  ....+++.++|++|++.   
T Consensus        40 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  119 (272)
T PRK14236         40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP  119 (272)
T ss_pred             EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCc
Confidence            445555653 6999999999999999999999999873     6 9999999988532  23345678999999864   


Q ss_pred             ----HHHHhcCC-CCCCh-HHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGC-PHAAI-REDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~-~~~~~-~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++.. ..... ....+++.++++.+++..    ..++.+.+||+|||||++|+
T Consensus       120 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la  180 (272)
T PRK14236        120 KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIA  180 (272)
T ss_pred             ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHH
Confidence                33332211 11111 122355778888888853    46788999999999999874

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.81  E-value=1.6e-20  Score=157.92  Aligned_cols=108  Identities=14%  Similarity=0.115  Sum_probs=80.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHh--cCC
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET--GGC  146 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~--g~~  146 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++           +..++|++|++.....+  ...
T Consensus        19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~v~q~~~~~~~l~~~~~   87 (251)
T PRK09544         19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGYVPQKLYLDTTLPLTVN   87 (251)
T ss_pred             EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEEeccccccccccChhHH
Confidence            445555653 69999999999999999999999999998 9999875           13689999986411000  000


Q ss_pred             CC--CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          147 PH--AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       147 ~~--~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ..  ........++.++++.++|....++++.+||+|||||++|+
T Consensus        88 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la  132 (251)
T PRK09544         88 RFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLA  132 (251)
T ss_pred             HHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHH
Confidence            00  00011234678899999999888999999999999999874

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.80  E-value=1.2e-19  Score=151.03  Aligned_cols=119  Identities=12%  Similarity=-0.016  Sum_probs=84.5

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcc--cCC-ccEEEeecCCCCCchHHHh-hhceeccchhHH------
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERIR------  139 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-G~I~i~g~di~~~~~~~~~-~~iG~v~Q~~~~------  139 (189)
                      ..++++|. .+|++++|+|+|||||||||++|+|++  +|+ |+|.++|.++...+...++ +.++|++|++..      
T Consensus        16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~   95 (248)
T PRK09580         16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSN   95 (248)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhH
Confidence            45666666 469999999999999999999999995  587 9999999988655544443 469999998641      


Q ss_pred             --HHHhcCC--CC------CChHHHHHHHHHHHhhcCCc-hhhccccc-cCChHHHHhhhcC
Q 029723          140 --AVETGGC--PH------AAIREDISINLGPLEELSNL-FKADLLLC-ESGGGNLQTISFI  189 (189)
Q Consensus       140 --~i~~g~~--~~------~~~~~d~~~v~~~L~~lgL~-~~~~~~~~-eLSGGqrq~~~~i  189 (189)
                        ++.+...  ..      +.......++.++++.+++. ...++.+. +||||||||++|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la  157 (248)
T PRK09580         96 QFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL  157 (248)
T ss_pred             HHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence              1111100  00      00111234667888999985 35666665 8999999999874

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=9.5e-20  Score=169.92  Aligned_cols=124  Identities=19%  Similarity=0.205  Sum_probs=94.7

Q ss_pred             CCCCC--CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-
Q 029723           64 YFSRR--APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-  138 (189)
Q Consensus        64 ~~~~~--~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-  138 (189)
                      .|..|  .+...+++|.-+ ||+++||||||+||||+.++|..++.|+ |+|.++|.||.+.+..-++++||+|-|+|. 
T Consensus       474 aYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL  553 (716)
T KOG0058|consen  474 AYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL  553 (716)
T ss_pred             ecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee
Confidence            34444  357788888776 9999999999999999999999999999 999999999999999999999999999997 


Q ss_pred             ------HHHHhcCCCCCChHHHHHH------HHHHHhhcC--CchhhccccccCChHHHHhhhcC
Q 029723          139 ------RAVETGGCPHAAIREDISI------NLGPLEELS--NLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ------~~i~~g~~~~~~~~~d~~~------v~~~L~~lg--L~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                            +||.+|.. .... ++...      +.+.+..|.  .+.....+-.+||||||||+||+
T Consensus       554 Fs~sI~eNI~YG~~-~~t~-e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIA  616 (716)
T KOG0058|consen  554 FSGSIRENIAYGLD-NATD-EEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIA  616 (716)
T ss_pred             ecccHHHHHhcCCC-CCCH-HHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHH
Confidence                  88888865 2221 11111      222333332  22234455568999999999985

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=9.6e-20  Score=157.18  Aligned_cols=119  Identities=16%  Similarity=0.162  Sum_probs=86.8

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++     |+ |+|.++|.++...  ....+++.++|++|++.   
T Consensus        60 iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  139 (305)
T PRK14264         60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP  139 (305)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc
Confidence            45555665 3699999999999999999999999986     56 9999999887532  23455678999999864   


Q ss_pred             ----HHHHhcCCCC-------------CC-hHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCPH-------------AA-IREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~~-------------~~-~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++....             .. ......++.++|+.+++.    ...++++.+||||||||++|+
T Consensus       140 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LA  212 (305)
T PRK14264        140 KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIA  212 (305)
T ss_pred             ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHH
Confidence                3343321100             00 012245678889988874    356888999999999999874

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1e-19  Score=165.67  Aligned_cols=119  Identities=16%  Similarity=0.099  Sum_probs=86.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH---------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI---------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~---------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......+ +++.++|++|++.         
T Consensus       263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~  342 (491)
T PRK10982        263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLD  342 (491)
T ss_pred             ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCc
Confidence            445555544 59999999999999999999999999998 99999998886544333 3557999999852         


Q ss_pred             --HH-----HHhcCCC-C-CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 --RA-----VETGGCP-H-AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~-----i~~g~~~-~-~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        ++     +...... . ........++.++++.+++. ...++++.+|||||||||+|+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la  403 (491)
T PRK10982        343 IGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG  403 (491)
T ss_pred             HHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence              01     1110000 0 11122345678899999995 467999999999999999874

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.80  E-value=9.1e-20  Score=161.49  Aligned_cols=128  Identities=22%  Similarity=0.225  Sum_probs=103.0

Q ss_pred             CCCCCCC---CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHH---hhhceecc
Q 029723           62 PGYFSRR---APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEF---LMRNGALP  134 (189)
Q Consensus        62 ~g~~~~~---~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~---~~~iG~v~  134 (189)
                      .|.+.+.   ..+.+.++|.-+ |+.+||||.+|||||||=++|+++++++|.|.|.|.++...+..++   ++++-+||
T Consensus       290 ~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVF  369 (534)
T COG4172         290 GGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVF  369 (534)
T ss_pred             CccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEE
Confidence            4554432   345577777765 8999999999999999999999999999999999999987776654   67899999


Q ss_pred             chhH----------HHHHhcCCC---CCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          135 EERI----------RAVETGGCP---HAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       135 Q~~~----------~~i~~g~~~---~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      |+|.          +.|.-|..-   .+...+-.+++.++|+.+||+. ..+++|.|+|||||||+||+
T Consensus       370 QDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIA  438 (534)
T COG4172         370 QDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIA  438 (534)
T ss_pred             eCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHH
Confidence            9996          344444432   3333556678999999999985 68999999999999999974

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=8.4e-20  Score=152.57  Aligned_cols=119  Identities=12%  Similarity=0.063  Sum_probs=83.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc--C---C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~--p---~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++  |   + |+|.++|.++...  ....+++.++|++|++.   
T Consensus        20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   99 (252)
T PRK14255         20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP   99 (252)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC
Confidence            455666653 699999999999999999999999865  4   4 9999999887431  22345568999999864   


Q ss_pred             ----HHHHhcCC-CCCCh-HHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGC-PHAAI-REDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~-~~~~~-~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+... ..... .....++.++++.+++.    ...++.+.+||+|||||++|+
T Consensus       100 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~la  160 (252)
T PRK14255        100 FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIA  160 (252)
T ss_pred             CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHH
Confidence                33332211 01111 11234566677777763    356789999999999999874

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.80  E-value=1.1e-19  Score=168.40  Aligned_cols=115  Identities=17%  Similarity=0.147  Sum_probs=86.8

Q ss_pred             CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|. ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|++|++.       +|
T Consensus       329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N  408 (569)
T PRK10789        329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN  408 (569)
T ss_pred             ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHH
Confidence            345566665 469999999999999999999999999998 999999999987777788899999999975       55


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCch-----------hhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-----------~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++... .    ..+++.++++.+++.+           ........||||||||++|+
T Consensus       409 i~~~~~~-~----~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lA  463 (569)
T PRK10789        409 IALGRPD-A----TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIA  463 (569)
T ss_pred             HhcCCCC-C----CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence            5554321 1    2234445555554432           23344568999999999874

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.80  E-value=9.8e-20  Score=153.13  Aligned_cols=118  Identities=14%  Similarity=0.024  Sum_probs=81.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHH---H--Hh
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA---V--ET  143 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~---i--~~  143 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++...   +  ++
T Consensus        36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl  115 (257)
T cd03288          36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL  115 (257)
T ss_pred             ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhc
Confidence            455666664 69999999999999999999999999998 99999999886656666778899999987511   1  11


Q ss_pred             cCCCCCChHHHH------HHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723          144 GGCPHAAIREDI------SINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       144 g~~~~~~~~~d~------~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ....... ....      ..+.++++.+  +++...+..+.+||+|||||++|+
T Consensus       116 ~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~la  168 (257)
T cd03288         116 DPECKCT-DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLA  168 (257)
T ss_pred             CcCCCCC-HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHH
Confidence            1110000 0000      0122334444  444445667789999999999874

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.1e-19  Score=158.76  Aligned_cols=120  Identities=16%  Similarity=0.113  Sum_probs=87.5

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCC--chHHHhhhceeccchhH--
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--  138 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--  138 (189)
                      ...++++|.-+ |++++|+|+|||||||||++|+|+++     |+ |+|.++|.++...  ...++++.++|+||++.  
T Consensus        96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~  175 (329)
T PRK14257         96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF  175 (329)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence            35666666654 89999999999999999999999986     45 9999999998532  23456778999999975  


Q ss_pred             -----HHHHhcCCCC-CC-hHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 -----RAVETGGCPH-AA-IREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -----~~i~~g~~~~-~~-~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                           +++.++.... .. .......+.++|+.++|.    ...++.+.+||||||||++|+
T Consensus       176 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA  237 (329)
T PRK14257        176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA  237 (329)
T ss_pred             CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence                 4454432111 11 111123466778888763    356789999999999999874

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.80  E-value=1.1e-19  Score=171.61  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=88.1

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|++++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++.       +|
T Consensus       471 ~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eN  550 (694)
T TIGR01846       471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDN  550 (694)
T ss_pred             cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHH
Confidence            3566666664 59999999999999999999999999998 999999999988888899999999999975       55


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCC-----------chhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSN-----------LFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL-----------~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++. +..    ..+++.++++.+++           +.........||||||||++++
T Consensus       551 i~~~~-~~~----~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lA  605 (694)
T TIGR01846       551 IALCN-PGA----PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIA  605 (694)
T ss_pred             HhcCC-CCC----CHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHH
Confidence            55542 222    23344444444443           3333444568999999999874

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.80  E-value=1.4e-19  Score=167.31  Aligned_cols=119  Identities=13%  Similarity=0.054  Sum_probs=91.9

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCC
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~  147 (189)
                      ...++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++...-.+....
T Consensus       356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n  435 (555)
T TIGR01194       356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD  435 (555)
T ss_pred             ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence            3556677764 59999999999999999999999999998 999999999988777888899999999976322221111


Q ss_pred             CCChHHHHHHHHHHHhhcCCchhhccc------cccCChHHHHhhhcC
Q 029723          148 HAAIREDISINLGPLEELSNLFKADLL------LCESGGGNLQTISFI  189 (189)
Q Consensus       148 ~~~~~~d~~~v~~~L~~lgL~~~~~~~------~~eLSGGqrq~~~~i  189 (189)
                       .......+++.++++.+++.+..+..      ...||||||||++|+
T Consensus       436 -~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlala  482 (555)
T TIGR01194       436 -EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALI  482 (555)
T ss_pred             -cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHH
Confidence             11122455678899999987654433      357999999999974

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.80  E-value=7e-20  Score=187.92  Aligned_cols=119  Identities=18%  Similarity=0.100  Sum_probs=94.0

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      .+.++++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ...++++.+||++|++.        +
T Consensus       944 ~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG~~pQ~~~L~~~LTV~E 1022 (2272)
T TIGR01257       944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVAE 1022 (2272)
T ss_pred             eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEEEEecCCcCCCCCCHHH
Confidence            3556666654 59999999999999999999999999998 999999999853 34456678999999864        4


Q ss_pred             HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+... ......+..+++.++|+.++|.+..++++.+||||||||++|+
T Consensus      1023 ~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257      1023 HILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            4443221 1122233456788999999999889999999999999999874

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.80  E-value=7.6e-20  Score=187.66  Aligned_cols=120  Identities=18%  Similarity=0.112  Sum_probs=94.2

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ..+.++++|.-+ ||+++|+||||||||||||+|+|+++|+ |+|.++|.++.+ ...+.++.|||+||++.        
T Consensus      1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IGy~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257      1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAIDDLLTGR 2030 (2272)
T ss_pred             ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEEEEeccccCCCCCCHH
Confidence            346677777754 9999999999999999999999999999 999999999853 34455678999999864        


Q ss_pred             HHHHhcC-CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~-~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.+.. .......+..+++.++|+.++|....++++.+||||||||++|+
T Consensus      2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257      2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHH
Confidence            3333321 11122223345678899999999889999999999999999874

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.80  E-value=1.6e-19  Score=166.28  Aligned_cols=119  Identities=18%  Similarity=0.154  Sum_probs=87.2

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      ...++++|.-+ |++++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|++|++.       +|
T Consensus       332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~N  411 (544)
T TIGR01842       332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAEN  411 (544)
T ss_pred             cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHH
Confidence            34566666654 8999999999999999999999999998 999999999987777788889999999975       45


Q ss_pred             HHhcCCCCCChHHH-----HHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIRED-----ISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d-----~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+.. +.....+.     ...+.+.++.+  +++.........||||||||++|+
T Consensus       412 i~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lA  466 (544)
T TIGR01842       412 IARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA  466 (544)
T ss_pred             HhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHH
Confidence            54332 11111110     01123444444  444445566788999999999874

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.80  E-value=1e-19  Score=150.28  Aligned_cols=115  Identities=17%  Similarity=0.055  Sum_probs=82.2

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-HHHHhcCC
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETGGC  146 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-~~i~~g~~  146 (189)
                      ....+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++..     +...+++.+.... +++.+...
T Consensus        36 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-----~~~~~~~~~~~tv~enl~~~~~  110 (224)
T cd03220          36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-----LGLGGGFNPELTGRENIYLNGR  110 (224)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh-----hcccccCCCCCcHHHHHHHHHH
Confidence            3555666655 59999999999999999999999999998 999999987631     1112344333222 44433211


Q ss_pred             -CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          147 -PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       147 -~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       .........+++.++++.++|....++.+.+||+|||||++|+
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  154 (224)
T cd03220         111 LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFA  154 (224)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence             1112223345678889999998888999999999999999874

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1.6e-19  Score=152.20  Aligned_cols=119  Identities=14%  Similarity=0.098  Sum_probs=85.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC------CccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDGEFLMRNGALPEERI---  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p------~G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~---  138 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|      +|+|.++|.++..  .....+++.++|++|++.   
T Consensus        22 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~  101 (261)
T PRK14258         22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP  101 (261)
T ss_pred             EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc
Confidence            445555655 5999999999999999999999999998      4899999988732  223345678999999854   


Q ss_pred             ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.+.... .. ...+...++.++++.+++.    ...++.+.+||+||+||++|+
T Consensus       102 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la  162 (261)
T PRK14258        102 MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA  162 (261)
T ss_pred             ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence                233222110 11 1122345677889999874    356888999999999999874

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1.8e-19  Score=151.98  Aligned_cols=120  Identities=13%  Similarity=0.060  Sum_probs=85.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC----CchHHHhhhceeccchhH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT----KEDGEFLMRNGALPEERI  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~----~~~~~~~~~iG~v~Q~~~  138 (189)
                      ....+++|.- +|++++|+|+|||||||||++|+|+++|     + |+|.++|.++..    ....++++.++|++|++.
T Consensus        30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~  109 (265)
T PRK14252         30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN  109 (265)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence            3556666664 5999999999999999999999999874     5 999999877631    123355678999999854


Q ss_pred             -------HHHHhcCC-CCCCh-HHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723          139 -------RAVETGGC-PHAAI-REDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -------~~i~~g~~-~~~~~-~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                             +++.++.. ..... ....+++.++++.+++.    ...++.+.+||+|||||++|+
T Consensus       110 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  173 (265)
T PRK14252        110 PFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA  173 (265)
T ss_pred             CCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHH
Confidence                   33333211 11111 11235667788888763    456788999999999999874

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.79  E-value=1.4e-19  Score=165.70  Aligned_cols=121  Identities=19%  Similarity=0.216  Sum_probs=93.7

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccC----C-ccEEEeecCCCCCchHHHh----hhceeccchhH
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFL----MRNGALPEERI  138 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p----~-G~I~i~g~di~~~~~~~~~----~~iG~v~Q~~~  138 (189)
                      ..+..+++|+-. ||++||||.+||||||++++|.|++++    . |+|.++|.|+......+++    +.|+||||+|.
T Consensus        22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~  101 (539)
T COG1123          22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM  101 (539)
T ss_pred             eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence            456677888765 999999999999999999999999985    2 9999999999877765542    47999999986


Q ss_pred             H----------HHHhcCCCC--CChHHHHHHHHHHHhhcCCchhhc--cccccCChHHHHhhhcC
Q 029723          139 R----------AVETGGCPH--AAIREDISINLGPLEELSNLFKAD--LLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~----------~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~~~~~--~~~~eLSGGqrq~~~~i  189 (189)
                      .          ++.-....+  ....+..+++.++|++++|.+...  ++|.+|||||||||.++
T Consensus       102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iA  166 (539)
T COG1123         102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIA  166 (539)
T ss_pred             hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHH
Confidence            1          111111111  124556778999999999986444  59999999999999864

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.79  E-value=1.9e-19  Score=145.75  Aligned_cols=128  Identities=16%  Similarity=0.151  Sum_probs=96.6

Q ss_pred             CCCCCCC-CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723           62 PGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (189)
Q Consensus        62 ~g~~~~~-~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~  138 (189)
                      .|.|.+. .-+...++|.-+ |+.++|||.||||||||.|+|+|+++|+ |+|.+++..+.-.+..-+.+.|-++||+|+
T Consensus        18 ~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpn   97 (267)
T COG4167          18 TGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN   97 (267)
T ss_pred             hhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCc
Confidence            3444332 345567777765 8999999999999999999999999999 999999998865555556678999999997


Q ss_pred             HHH----HhcC------C--CCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 RAV----ETGG------C--PHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i----~~g~------~--~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ..+    +.|.      .  -.+......+++.+.|..+||- +.++.++..||-||||||+++
T Consensus        98 ts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLA  161 (267)
T COG4167          98 TSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALA  161 (267)
T ss_pred             cccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHH
Confidence            211    1111      0  1122233456788999999985 578999999999999999874

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=2.7e-19  Score=163.72  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=92.4

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +...+++|.-+ |+.++|||+||||||||+++|+|+++|+ |+|.|||.++...++..+++.++||+|+|.       +|
T Consensus       335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN  414 (559)
T COG4988         335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN  414 (559)
T ss_pred             cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH
Confidence            45556666554 8999999999999999999999999998 999999999999999999999999999986       66


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchh------hcccccc----CChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFK------ADLLLCE----SGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~------~~~~~~e----LSGGqrq~~~~i  189 (189)
                      +.++... .    ..+.+.+++++.++.+.      +|..+.+    |||||+||++++
T Consensus       415 i~l~~~~-~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLA  468 (559)
T COG4988         415 ILLARPD-A----SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALA  468 (559)
T ss_pred             hhccCCc-C----CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHH
Confidence            6665432 2    35667777777776543      2444555    999999999874

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.79  E-value=1.6e-19  Score=152.83  Aligned_cols=93  Identities=20%  Similarity=0.130  Sum_probs=80.1

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCC
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC  146 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~  146 (189)
                      ..+.++++|.-+ ||++||||.||||||||-|+|+||++|+ |+|.+.|.++...+                        
T Consensus        26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~------------------------   81 (268)
T COG4608          26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------------------------   81 (268)
T ss_pred             eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc------------------------
Confidence            356788888765 8999999999999999999999999999 99999999975432                        


Q ss_pred             CCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          147 PHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       147 ~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                          ..+..+++.++|+.+++.. .+++++.+|||||+||++|+
T Consensus        82 ----~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IA  121 (268)
T COG4608          82 ----KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIA  121 (268)
T ss_pred             ----hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHH
Confidence                1224567999999999975 78999999999999999874

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=2.2e-19  Score=175.36  Aligned_cols=121  Identities=18%  Similarity=0.158  Sum_probs=90.1

Q ss_pred             CCCCCC--CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-
Q 029723           64 YFSRRA--PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-  138 (189)
Q Consensus        64 ~~~~~~--~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-  138 (189)
                      .|..|.  ...++++|.-+ |++++|||||||||||++++|.+++.|+ |+|.++|.|+...+...+|.+||.|+|+|. 
T Consensus       359 sYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl  438 (1228)
T KOG0055|consen  359 SYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL  438 (1228)
T ss_pred             cCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhh
Confidence            444443  56666766655 8999999999999999999999999999 999999999999999999999999999997 


Q ss_pred             ------HHHHhcCCCCCChHHHHHHHHHHH---------hhc--CCchhhccccccCChHHHHhhhcC
Q 029723          139 ------RAVETGGCPHAAIREDISINLGPL---------EEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ------~~i~~g~~~~~~~~~d~~~v~~~L---------~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                            +|+.+|... ..    .+++.+++         ..|  +++......-.+||||||||+||+
T Consensus       439 F~~tI~eNI~~G~~d-at----~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIA  501 (1228)
T KOG0055|consen  439 FATTIRENIRYGKPD-AT----REEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIA  501 (1228)
T ss_pred             hcccHHHHHhcCCCc-cc----HHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHH
Confidence                  677777533 21    22222222         222  222222333345999999999984

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.79  E-value=3e-19  Score=166.03  Aligned_cols=114  Identities=18%  Similarity=0.113  Sum_probs=85.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|++|++.       +|+
T Consensus       350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni  429 (585)
T TIGR01192       350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI  429 (585)
T ss_pred             cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHH
Confidence            456677764 69999999999999999999999999998 999999999987777788889999999975       566


Q ss_pred             HhcCCCCCChHHHHHHHHHHHhhc-----------CCchhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDISINLGPLEEL-----------SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~~v~~~L~~l-----------gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++.. ...    .+++.++++..           +++.........||||||||++|+
T Consensus       430 ~~~~~-~~~----~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lA  483 (585)
T TIGR01192       430 RLGRE-GAT----DEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIA  483 (585)
T ss_pred             hcCCC-CCC----HHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence            55432 121    12222223222           334345566778999999999874

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.78  E-value=5.1e-20  Score=146.91  Aligned_cols=68  Identities=19%  Similarity=0.193  Sum_probs=56.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc--hHHHhhhceeccchhH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~~  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++....  ...+++.++|++|++.
T Consensus        15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~   86 (178)
T cd03229          15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFA   86 (178)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCc
Confidence            455556663 69999999999999999999999999998 99999998886543  3456678999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.78  E-value=3.4e-19  Score=167.65  Aligned_cols=119  Identities=17%  Similarity=0.140  Sum_probs=92.9

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH------
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~------  138 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++    ++.++|+||++.      
T Consensus        23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t  102 (648)
T PRK10535         23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT  102 (648)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCC
Confidence            45566666 469999999999999999999999999998 999999999876655443    457999999874      


Q ss_pred             --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.+.... .....+..+++.++++.++|....++.+.+||+||+||++|+
T Consensus       103 v~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA  156 (648)
T PRK10535        103 AAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA  156 (648)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH
Confidence              233222111 111234456788999999999889999999999999999874

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.78  E-value=2.9e-19  Score=141.94  Aligned_cols=67  Identities=24%  Similarity=0.296  Sum_probs=57.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++
T Consensus        17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   85 (173)
T cd03246          17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDD   85 (173)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCC
Confidence            445555553 69999999999999999999999999998 99999999887666666777899999986

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13409 putative ATPase RIL; Provisional

Probab=99.78  E-value=8.6e-20  Score=170.20  Aligned_cols=118  Identities=16%  Similarity=0.039  Sum_probs=82.4

Q ss_pred             cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEE-----------EeecCCCCCchH--HHhhhceeccchh
Q 029723           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDG--EFLMRNGALPEER  137 (189)
Q Consensus        72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~-----------i~g~di~~~~~~--~~~~~iG~v~Q~~  137 (189)
                      ..+++...+|++++|+|||||||||||++|+|+++|+ |+|.           ++|.++......  +...++++.+|..
T Consensus        90 L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~  169 (590)
T PRK13409         90 LYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYV  169 (590)
T ss_pred             EecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccch
Confidence            3445556789999999999999999999999999999 9997           888777432111  1112355556543


Q ss_pred             HHHHHh---cCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          138 IRAVET---GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       138 ~~~i~~---g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .....+   .....+.......++.++|+.++|....++.+.+||||||||++|+
T Consensus       170 ~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia  224 (590)
T PRK13409        170 DLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIA  224 (590)
T ss_pred             hhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            311110   0001111122345788999999998888999999999999999974

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=2.4e-19  Score=144.83  Aligned_cols=117  Identities=16%  Similarity=0.119  Sum_probs=86.1

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      ..+.+++|.- +||++-|.||||||||||||+|+|+++|+ |+|++++..+.... ..+.+.+-|+--.+.        +
T Consensus        16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~yLGH~~giK~eLTa~E   94 (209)
T COG4133          16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLYLGHQPGIKTELTALE   94 (209)
T ss_pred             eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHHhhccccccchhhHHH
Confidence            4556666665 49999999999999999999999999999 99999998885432 223344444432222        3


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      |+.|-...+-.  .+...+.++|+.++|....+.++..||-|||+|||++
T Consensus        95 NL~F~~~~~~~--~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlA  142 (209)
T COG4133          95 NLHFWQRFHGS--GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALA  142 (209)
T ss_pred             HHHHHHHHhCC--CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHH
Confidence            43332111100  1456788999999999999999999999999999974

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.78  E-value=6.1e-20  Score=149.41  Aligned_cols=105  Identities=16%  Similarity=0.135  Sum_probs=75.1

Q ss_pred             CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc---CC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhc
Q 029723           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG  144 (189)
Q Consensus        70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~---p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g  144 (189)
                      ....+++|. .+|++++|+|||||||||||++|+|+++   |+ |+|.++|.++.... ..+++.++|++|++...    
T Consensus        21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~~~i~~~~q~~~~~----   95 (202)
T cd03233          21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYPGEIIYVSEEDVHF----   95 (202)
T ss_pred             eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhcceEEEEecccccC----
Confidence            345566665 4699999999999999999999999998   77 99999999885432 34566899999985321    


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       145 ~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +.+...+.....   + .+.    .++.+.+||+||+||++|+
T Consensus        96 --~~~tv~~~l~~~---~-~~~----~~~~~~~LS~Ge~qrl~la  130 (202)
T cd03233          96 --PTLTVRETLDFA---L-RCK----GNEFVRGISGGERKRVSIA  130 (202)
T ss_pred             --CCCcHHHHHhhh---h-hhc----cccchhhCCHHHHHHHHHH
Confidence              112222111111   0 011    5778899999999999874

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.78  E-value=3.8e-19  Score=144.30  Aligned_cols=101  Identities=22%  Similarity=0.153  Sum_probs=72.2

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      ....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|             .|+|++|++.       ++
T Consensus        19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~l~~~t~~en   85 (204)
T cd03250          19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPWIQNGTIREN   85 (204)
T ss_pred             ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCchhccCcHHHH
Confidence            3555666655 59999999999999999999999999998 9999987             5899999875       33


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCC-----------chhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSN-----------LFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL-----------~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+...  ..    ...+.++++.+++           ....+..+.+||+|||||++|+
T Consensus        86 l~~~~~--~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~la  139 (204)
T cd03250          86 ILFGKP--FD----EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLA  139 (204)
T ss_pred             hccCCC--cC----HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHH
Confidence            333211  11    1122233333333           3334566889999999999874

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PTZ00243 ABC transporter; Provisional

Probab=99.78  E-value=4.4e-19  Score=179.97  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=92.6

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+..++++|.- +|+.+||||++|||||||+++|+|+++|+ |+|.|+|.|+...+..++++.|+||||+|.       +
T Consensus      1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIre 1402 (1560)
T PTZ00243       1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQ 1402 (1560)
T ss_pred             CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHH
Confidence            44677888876 48999999999999999999999999998 999999999998889999999999999986       4


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhh-------cccc----ccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKA-------DLLL----CESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-------~~~~----~eLSGGqrq~~~~i  189 (189)
                      |+....  ..    ..+++.++|+.+++.+..       +..+    ..||||||||++|+
T Consensus      1403 NIdp~~--~~----sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLA 1457 (1560)
T PTZ00243       1403 NVDPFL--EA----SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMA 1457 (1560)
T ss_pred             HhCccc--CC----CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHH
Confidence            443211  11    345677888888776532       2233    46999999999874

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.78  E-value=4.4e-19  Score=148.28  Aligned_cols=125  Identities=19%  Similarity=0.111  Sum_probs=95.4

Q ss_pred             CCCCCCCCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch-HHHhhhceeccchhH--
Q 029723           64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI--  138 (189)
Q Consensus        64 ~~~~~~~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~~--  138 (189)
                      .|+++. ...+++|. ++||-.+|+|||||||||||++|++..+|+ |.+.+.|+.+-+.+. .+++++||+|..+-.  
T Consensus        40 ~r~gk~-iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~  118 (257)
T COG1119          40 RRNGKK-ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHER  118 (257)
T ss_pred             EECCEe-eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhh
Confidence            344444 44455554 469999999999999999999999999998 999999998866555 889999999865432  


Q ss_pred             --------HHHHhcCCCC------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --------RAVETGGCPH------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --------~~i~~g~~~~------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                              +.+..|.+..      ..-+++..++..+|+.+++....++++.+||-||||+|-|+
T Consensus       119 ~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLia  183 (257)
T COG1119         119 FRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIA  183 (257)
T ss_pred             cccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHH
Confidence                    1222222111      11145667888999999999999999999999999999764

>PLN03232 ABC transporter C family member; Provisional

Probab=99.78  E-value=3.9e-19  Score=179.91  Aligned_cols=115  Identities=16%  Similarity=0.094  Sum_probs=91.3

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+..++++|.-+ ||.+||||++|||||||+++|+|+++|+ |+|.++|.|+.+.+..++|++|++|||+|.       +
T Consensus      1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~ 1328 (1495)
T PLN03232       1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRF 1328 (1495)
T ss_pred             CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHH
Confidence            456777777754 8999999999999999999999999998 999999999998889999999999999986       4


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhc-----------cccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKAD-----------LLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~-----------~~~~eLSGGqrq~~~~i  189 (189)
                      |+..+.  ..    ..+++.++|+..++.+...           ..-..||||||||++|+
T Consensus      1329 NL~~~~--~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLA 1383 (1495)
T PLN03232       1329 NIDPFS--EH----NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLA 1383 (1495)
T ss_pred             HcCCCC--CC----CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHH
Confidence            554332  11    3455667777776654322           22357999999999874

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.77  E-value=4.6e-19  Score=178.87  Aligned_cols=115  Identities=18%  Similarity=0.088  Sum_probs=90.5

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccC-----------------------------------------
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD-----------------------------------------  107 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p-----------------------------------------  107 (189)
                      +..++++|.-+ |++++||||+|||||||+++|+|++.|                                         
T Consensus      1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 (1466)
T PTZ00265       1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLT 1261 (1466)
T ss_pred             ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            46677777665 899999999999999999999999998                                         


Q ss_pred             -------------C-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHHHhcCCCCCChHHHHHHHHHHHhhcC
Q 029723          108 -------------K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELS  166 (189)
Q Consensus       108 -------------~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i~~g~~~~~~~~~d~~~v~~~L~~lg  166 (189)
                                   + |+|.++|.|+...+...+++.|+||+|+|.       +|+.++.. ..    ..+.+.++++..+
T Consensus      1262 ~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-~a----t~eeI~~A~k~A~ 1336 (1466)
T PTZ00265       1262 KEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-DA----TREDVKRACKFAA 1336 (1466)
T ss_pred             cccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-CC----CHHHHHHHHHHcC
Confidence                         5 999999999998899999999999999986       77777643 22    2344555655555


Q ss_pred             Cchh-------hcc----ccccCChHHHHhhhcC
Q 029723          167 NLFK-------ADL----LLCESGGGNLQTISFI  189 (189)
Q Consensus       167 L~~~-------~~~----~~~eLSGGqrq~~~~i  189 (189)
                      +.+.       .+.    .-..||||||||++|+
T Consensus      1337 l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIA 1370 (1466)
T PTZ00265       1337 IDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIA 1370 (1466)
T ss_pred             CHHHHHhCccccCCccCCCCCcCCHHHHHHHHHH
Confidence            4332       233    3446999999999985

>PLN03211 ABC transporter G-25; Provisional

Probab=99.77  E-value=4e-19  Score=167.56  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=86.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC---CccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p---~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ..++++|.- +|++++|+|||||||||||++|+|+++|   +|+|.++|.++.    .+.++.++||+|++.        
T Consensus        83 iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lTV~  158 (659)
T PLN03211         83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLTVR  158 (659)
T ss_pred             eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCCHH
Confidence            455556554 5899999999999999999999999987   399999998873    234567999999865        


Q ss_pred             HHHHhcCCCC----CChHHHHHHHHHHHhhcCCchhh-----ccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPH----AAIREDISINLGPLEELSNLFKA-----DLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~-----~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.+.....    ....+..+++.++|+.++|.+..     ++.+.+||||||||++|+
T Consensus       159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia  218 (659)
T PLN03211        159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA  218 (659)
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHH
Confidence            4444432111    12233446688999999997654     445778999999999874

>PLN03130 ABC transporter C family member; Provisional

Probab=99.77  E-value=4.6e-19  Score=180.26  Aligned_cols=115  Identities=17%  Similarity=0.104  Sum_probs=91.6

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+..++++|.-+ ||.+||||++|||||||+++|+|+++|+ |+|.++|.|+.+.+..++|++|++|||+|.       +
T Consensus      1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIre 1331 (1622)
T PLN03130       1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRF 1331 (1622)
T ss_pred             CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHH
Confidence            356777777755 8999999999999999999999999998 999999999999999999999999999986       4


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i  189 (189)
                      |+..+. . .    ..+++.++|+..++.+....           ....||||||||++|+
T Consensus      1332 NLd~~~-~-~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLA 1386 (1622)
T PLN03130       1332 NLDPFN-E-H----NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLA 1386 (1622)
T ss_pred             HhCcCC-C-C----CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHH
Confidence            554432 1 1    34556677777666543322           2347999999999974

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=4.8e-19  Score=162.71  Aligned_cols=104  Identities=18%  Similarity=0.091  Sum_probs=79.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----------  138 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.           +.++|++|++.          
T Consensus       334 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~  402 (530)
T PRK15064        334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGYYAQDHAYDFENDLTLF  402 (530)
T ss_pred             eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEEEcccccccCCCCCcHH
Confidence            455566655 48999999999999999999999999998 99998752           36899999753          


Q ss_pred             HHHHhcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++..  ..  ......+++.++|+.+++. ...++++.+||||||||++|+
T Consensus       403 ~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la  450 (530)
T PRK15064        403 DWMSQ--WR--QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG  450 (530)
T ss_pred             HHHHH--hc--cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHH
Confidence            11111  00  0011345678899999994 578999999999999999874

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.77  E-value=4e-19  Score=140.89  Aligned_cols=67  Identities=16%  Similarity=0.199  Sum_probs=56.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|+||++
T Consensus        17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~   85 (171)
T cd03228          17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDP   85 (171)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCc
Confidence            455566664 59999999999999999999999999998 99999998876555556677899999986

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.77  E-value=4.8e-19  Score=147.89  Aligned_cols=118  Identities=15%  Similarity=0.012  Sum_probs=93.1

Q ss_pred             CCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-HHHHh
Q 029723           67 RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVET  143 (189)
Q Consensus        67 ~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-~~i~~  143 (189)
                      ....++++++|.-. ||.+||||+||||||||||+|+|.++|+ |+|.++|.-..-     +.-.+||-++-.. +|+.+
T Consensus        38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~l-----i~lg~Gf~pelTGreNi~l  112 (249)
T COG1134          38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL-----IELGAGFDPELTGRENIYL  112 (249)
T ss_pred             ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehh-----hhcccCCCcccchHHHHHH
Confidence            34566788888765 9999999999999999999999999999 999999863311     1225677666543 55544


Q ss_pred             -cCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          144 -GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       144 -g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +....+..++..++++++++.-+|.+..+.+++.+|-||+.|++|.
T Consensus       113 ~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFs  159 (249)
T COG1134         113 RGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFS  159 (249)
T ss_pred             HHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHh
Confidence             3334455567788899999999999999999999999999999984

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.77  E-value=1.1e-19  Score=144.26  Aligned_cols=67  Identities=27%  Similarity=0.367  Sum_probs=56.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~  138 (189)
                      ..++++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.... .++++.++|+||++.
T Consensus        15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~   83 (173)
T cd03230          15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPS   83 (173)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEEecCCc
Confidence            456666664 59999999999999999999999999998 99999998875433 456678999999864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.77  E-value=2.3e-19  Score=142.97  Aligned_cols=92  Identities=14%  Similarity=0.146  Sum_probs=69.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCC
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH  148 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~  148 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ...+++.++|++|++...      . 
T Consensus        17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~------~-   88 (178)
T cd03247          17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRPYLF------D-   88 (178)
T ss_pred             ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEEEccCCeee------c-
Confidence            444555554 58999999999999999999999999998 9999999877443 345667899999976311      1 


Q ss_pred             CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          149 AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       149 ~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ....       +.+            +.+||+||+||++|+
T Consensus        89 ~tv~-------~~i------------~~~LS~G~~qrv~la  110 (178)
T cd03247          89 TTLR-------NNL------------GRRFSGGERQRLALA  110 (178)
T ss_pred             ccHH-------Hhh------------cccCCHHHHHHHHHH
Confidence            1111       111            789999999999874

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.77  E-value=2.2e-19  Score=146.30  Aligned_cols=119  Identities=16%  Similarity=0.056  Sum_probs=99.0

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee-cCCCCCchHHHhh-hceeccchhH-------
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT-NDIFTKEDGEFLM-RNGALPEERI-------  138 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g-~di~~~~~~~~~~-~iG~v~Q~~~-------  138 (189)
                      .+.|+++|.-. ||.-+|||||||||||||.+|+|..+|+ |++++.+ .|+...+..++.+ .||.-||.|.       
T Consensus        19 ~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV   98 (249)
T COG4674          19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTV   98 (249)
T ss_pred             eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccH
Confidence            36677777664 9999999999999999999999999999 9999999 8998877776644 7999999886       


Q ss_pred             -HHHHhcCCCCCCh---------HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          139 -RAVETGGCPHAAI---------REDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       139 -~~i~~g~~~~~~~---------~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                       +|+++..+....+         .+.+.+++++|+..+|.+..++....||-||||.+.|
T Consensus        99 ~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEI  158 (249)
T COG4674          99 RENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEI  158 (249)
T ss_pred             HHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhh
Confidence             5555554433221         3456789999999999999999999999999999986

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.77  E-value=8e-19  Score=140.46  Aligned_cols=67  Identities=22%  Similarity=0.276  Sum_probs=55.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch-HHHhhhceeccchh
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEER  137 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~  137 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++..... ..+++.++|++|++
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~   84 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDR   84 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCc
Confidence            345555653 59999999999999999999999999998 999999998865543 33466899999985

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.76  E-value=9.7e-19  Score=163.75  Aligned_cols=117  Identities=16%  Similarity=0.056  Sum_probs=90.8

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC----CccEEEeecCCCCCchHHHhhhceeccchhH------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p----~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------  138 (189)
                      ...+++++.- +||+++|+|||||||||||++|+|.+++    +|+|.++|.++.   ..++++.++||+|++.      
T Consensus        39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~lT  115 (617)
T TIGR00955        39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPTLT  115 (617)
T ss_pred             ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCccCc
Confidence            3455555554 5999999999999999999999999876    389999998873   3456778999999975      


Q ss_pred             --HHHHhcCCCCC----ChHHHHHHHHHHHhhcCCchhhccccc------cCChHHHHhhhcC
Q 029723          139 --RAVETGGCPHA----AIREDISINLGPLEELSNLFKADLLLC------ESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~~~----~~~~d~~~v~~~L~~lgL~~~~~~~~~------eLSGGqrq~~~~i  189 (189)
                        +++.++.....    ...+...++.++|+.++|.+..+..+.      .||||||||++|+
T Consensus       116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia  178 (617)
T TIGR00955       116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFA  178 (617)
T ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHH
Confidence              55555432221    223445678999999999887788776      4999999999874

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.76  E-value=9.6e-19  Score=137.82  Aligned_cols=108  Identities=14%  Similarity=0.029  Sum_probs=86.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccC----CccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGC  146 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p----~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~  146 (189)
                      .+|||+.|+||+||||||||..+.|.+.+    +|++.++++++...+.  -+|.+|++||++-        +|+.+..-
T Consensus        26 a~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~qRq~GiLFQD~lLFphlsVg~Nl~fAlp  103 (213)
T COG4136          26 AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQRQIGILFQDALLFPHLSVGQNLLFALP  103 (213)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hhhheeeeecccccccccccccceEEecC
Confidence            36999999999999999999999999986    3999999999976543  3568999999975        22222222


Q ss_pred             CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       147 ~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                      +.+.-+..+..+..+|++.+|....++.|.+||||||.||++
T Consensus       104 ~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL  145 (213)
T COG4136         104 ATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVAL  145 (213)
T ss_pred             cccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHH
Confidence            222223345567889999999999999999999999999986

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=8.9e-19  Score=160.95  Aligned_cols=108  Identities=18%  Similarity=0.077  Sum_probs=78.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.           ..|+|++|++.        ++
T Consensus        16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~tv~e~   84 (530)
T PRK15064         16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKLRQDQFAFEEFTVLDT   84 (530)
T ss_pred             eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEeccCCcCCCCcHHHH
Confidence            455666664 58999999999999999999999999998 99998762           24888888752        22


Q ss_pred             HHhcCC---------------CCC------------------ChHHHHHHHHHHHhhcCCchh-hccccccCChHHHHhh
Q 029723          141 VETGGC---------------PHA------------------AIREDISINLGPLEELSNLFK-ADLLLCESGGGNLQTI  186 (189)
Q Consensus       141 i~~g~~---------------~~~------------------~~~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~  186 (189)
                      +.++..               ...                  ...+...++.++|+.++|... .++++.+|||||||||
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv  164 (530)
T PRK15064         85 VIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRV  164 (530)
T ss_pred             HHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHH
Confidence            222110               000                  000123567889999999753 4578999999999999


Q ss_pred             hcC
Q 029723          187 SFI  189 (189)
Q Consensus       187 ~~i  189 (189)
                      +|+
T Consensus       165 ~lA  167 (530)
T PRK15064        165 LLA  167 (530)
T ss_pred             HHH
Confidence            974

>PRK13409 putative ATPase RIL; Provisional

Probab=99.76  E-value=1.1e-18  Score=162.70  Aligned_cols=94  Identities=18%  Similarity=0.162  Sum_probs=74.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHA  149 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~  149 (189)
                      .+||+++|+|||||||||||++|+|+++|+ |+|.++   +          .++|++|++.        +++.++.. ..
T Consensus       363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i~y~~Q~~~~~~~~tv~e~l~~~~~-~~  428 (590)
T PRK13409        363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KISYKPQYIKPDYDGTVEDLLRSITD-DL  428 (590)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eEEEecccccCCCCCcHHHHHHHHhh-hc
Confidence            469999999999999999999999999998 999875   1          4889999854        23332211 11


Q ss_pred             ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .   ....+.++|+.++|....++++.+|||||||||+|+
T Consensus       429 ~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiA  465 (590)
T PRK13409        429 G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIA  465 (590)
T ss_pred             C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHH
Confidence            1   123567899999999889999999999999999974

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.75  E-value=1.7e-18  Score=174.74  Aligned_cols=76  Identities=11%  Similarity=0.133  Sum_probs=64.0

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe-ecCCCCCchHHHhhhceeccchhH-------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~-g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      +...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++ +.++...+...+++.|+||+|++.       +
T Consensus       399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e  478 (1466)
T PTZ00265        399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN  478 (1466)
T ss_pred             ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence            4566677664 59999999999999999999999999998 999995 578877777778889999999975       6


Q ss_pred             HHHhcC
Q 029723          140 AVETGG  145 (189)
Q Consensus       140 ~i~~g~  145 (189)
                      ++.++.
T Consensus       479 NI~~g~  484 (1466)
T PTZ00265        479 NIKYSL  484 (1466)
T ss_pred             HHHhcC
Confidence            666653

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.75  E-value=1.7e-18  Score=146.91  Aligned_cols=115  Identities=11%  Similarity=-0.050  Sum_probs=77.9

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-HHHHhcC
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETGG  145 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-~~i~~g~  145 (189)
                      .....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.... .     ....++.++... +++.+..
T Consensus        37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~-~-----~~~~~~~~~~tv~enl~~~~  110 (264)
T PRK13546         37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSV-I-----AISAGLSGQLTGIENIEFKM  110 (264)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeE-E-----ecccCCCCCCcHHHHHHHHH
Confidence            44556666665 59999999999999999999999999998 99999885210 0     011122221111 3333221


Q ss_pred             C-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          146 C-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       146 ~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      . ......+....+..+++.+++....++.+.+||+||+||++|+
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~La  155 (264)
T PRK13546        111 LCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFS  155 (264)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence            1 1122223344566788888998888999999999999999874

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.75  E-value=5.3e-19  Score=143.55  Aligned_cols=97  Identities=15%  Similarity=0.077  Sum_probs=71.7

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhc--ccCC-ccEEEeecCCCCCchHHH-hhhceeccchhHHHHHhcC
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERIRAVETGG  145 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gl--l~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~~~i~~g~  145 (189)
                      ...+++|.- +|++++|+|+|||||||||++|+|+  ++|+ |+|.++|.++.......+ ++.++|++|++...     
T Consensus        15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~-----   89 (200)
T cd03217          15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEI-----   89 (200)
T ss_pred             eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhc-----
Confidence            556666664 5999999999999999999999999  4687 999999999876555444 34699999986421     


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       146 ~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +...       +.+.+         .....+||+||+||++|+
T Consensus        90 -~~~~-------~~~~l---------~~~~~~LS~G~~qrv~la  116 (200)
T cd03217          90 -PGVK-------NADFL---------RYVNEGFSGGEKKRNEIL  116 (200)
T ss_pred             -cCcc-------HHHHH---------hhccccCCHHHHHHHHHH
Confidence             1111       11122         233468999999999874

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.75  E-value=2.2e-18  Score=137.29  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=88.0

Q ss_pred             cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC--CC----chHHHhhhceeccchhH-------
Q 029723           74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TK----EDGEFLMRNGALPEERI-------  138 (189)
Q Consensus        74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~--~~----~~~~~~~~iG~v~Q~~~-------  138 (189)
                      ++.|+ +.|+.+.|+||+|+|||||||.|.-+.-|. |++.|-+....  +.    ...++|+.+|+|||...       
T Consensus        20 di~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv   99 (242)
T COG4161          20 DITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTV   99 (242)
T ss_pred             eeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHH
Confidence            44444 459999999999999999999999888888 99888775442  21    12356789999999865       


Q ss_pred             -HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++-..-+  ..+...+...++.++|++|.|.+.+|++|-.|||||+|||+|+
T Consensus       100 ~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaia  153 (242)
T COG4161         100 QENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIA  153 (242)
T ss_pred             HHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHH
Confidence             22211111  1223345567889999999999999999999999999999974

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.75  E-value=1.7e-18  Score=160.14  Aligned_cols=107  Identities=14%  Similarity=0.103  Sum_probs=78.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh-H--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-I--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~-~--------~  139 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+. .++          .|||++|++ .        +
T Consensus       339 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~----------~i~~v~q~~~~~~~~~tv~e  407 (556)
T PRK11819        339 LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETV----------KLAYVDQSRDALDPNKTVWE  407 (556)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-Cce----------EEEEEeCchhhcCCCCCHHH
Confidence            455566654 58999999999999999999999999998 999883 322          589999985 2        2


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++.... ........+..+|+.+++.. ..++++.+||||||||++|+
T Consensus       408 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la  457 (556)
T PRK11819        408 EISGGLDII-KVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLA  457 (556)
T ss_pred             HHHhhcccc-cccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence            333321110 01111234557899999964 57999999999999999874

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.75  E-value=1.2e-18  Score=137.56  Aligned_cols=65  Identities=12%  Similarity=0.091  Sum_probs=53.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccc
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPE  135 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q  135 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+.. .+++.++|+||
T Consensus        15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q   82 (163)
T cd03216          15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ   82 (163)
T ss_pred             EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe
Confidence            445555554 59999999999999999999999999998 9999999988655443 34567999988

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.75  E-value=1.8e-18  Score=159.74  Aligned_cols=107  Identities=13%  Similarity=0.112  Sum_probs=78.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~  139 (189)
                      ..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+ +.++          .|+|++|++.         +
T Consensus       337 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~~----------~i~~v~q~~~~~~~~~tv~e  405 (552)
T TIGR03719       337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETV----------KLAYVDQSRDALDPNKTVWE  405 (552)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCce----------EEEEEeCCccccCCCCcHHH
Confidence            455566664 58999999999999999999999999998 99988 3322          5899999852         3


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++.... .......++.++|+.+++.. ..++++.+|||||||||+|+
T Consensus       406 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la  455 (552)
T TIGR03719       406 EISGGLDII-QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA  455 (552)
T ss_pred             HHHhhcccc-ccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence            333322110 01111234567899999964 57899999999999999974

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.74  E-value=2.5e-18  Score=161.47  Aligned_cols=107  Identities=16%  Similarity=0.183  Sum_probs=79.6

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R  139 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~  139 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.+ +.++          .|+|++|++.         +
T Consensus       334 il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y~~q~~~~l~~~~tv~e  402 (635)
T PRK11147        334 LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAYFDQHRAELDPEKTVMD  402 (635)
T ss_pred             EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEEEeCcccccCCCCCHHH
Confidence            45566665 469999999999999999999999999998 99988 5432          5899999742         3


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+.... .........+.++|+.+++. ...++++.+|||||||||+|+
T Consensus       403 ~l~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la  452 (635)
T PRK11147        403 NLAEGKQE-VMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLA  452 (635)
T ss_pred             HHHhhccc-ccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHH
Confidence            33332111 11111234677889999996 467899999999999999874

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.74  E-value=7e-19  Score=162.75  Aligned_cols=107  Identities=17%  Similarity=0.189  Sum_probs=79.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.           ..|+||+|++.        ++
T Consensus        22 il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i~~v~Q~~~~~~~~tv~e~   90 (556)
T PRK11819         22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKVGYLPQEPQLDPEKTVREN   90 (556)
T ss_pred             eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEecCCCCCCCCcHHHH
Confidence            556666655 48999999999999999999999999998 99988631           35899999863        33


Q ss_pred             HHhcCCC---------------CCC---h-------------------HHHHHHHHHHHhhcCCchhhccccccCChHHH
Q 029723          141 VETGGCP---------------HAA---I-------------------REDISINLGPLEELSNLFKADLLLCESGGGNL  183 (189)
Q Consensus       141 i~~g~~~---------------~~~---~-------------------~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqr  183 (189)
                      +.++...               ...   +                   .+...++.++|+.++|. ..++++.+||||||
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqk  169 (556)
T PRK11819         91 VEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGER  169 (556)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHH
Confidence            3332100               000   0                   00134577889999996 47899999999999


Q ss_pred             HhhhcC
Q 029723          184 QTISFI  189 (189)
Q Consensus       184 q~~~~i  189 (189)
                      |||+|+
T Consensus       170 qrv~la  175 (556)
T PRK11819        170 RRVALC  175 (556)
T ss_pred             HHHHHH
Confidence            999974

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.74  E-value=3e-18  Score=173.73  Aligned_cols=114  Identities=16%  Similarity=0.070  Sum_probs=90.0

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|+.+||+|++|||||||+++|+|++.|+ |+|.++|.|+.+.+..++|++|++|||+|.       +|
T Consensus      1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~N 1379 (1522)
T TIGR00957      1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN 1379 (1522)
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHH
Confidence            4667777775 48999999999999999999999999998 999999999999999999999999999986       44


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchh-------hcccc----ccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFK-------ADLLL----CESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-------~~~~~----~eLSGGqrq~~~~i  189 (189)
                      +....  ..    ..+.+.++|+.+++.+.       ++..+    ..||||||||++|+
T Consensus      1380 Ldp~~--~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957      1380 LDPFS--QY----SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred             cCccc--CC----CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHH
Confidence            43111  11    34456677777766432       23334    45999999999874

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=4.6e-18  Score=141.06  Aligned_cols=108  Identities=16%  Similarity=0.015  Sum_probs=85.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc--cCC-ccEEEeecCCCCCchHHHhh-hceeccchhHH--------HHHhcCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERIR--------AVETGGCP  147 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-G~I~i~g~di~~~~~~~~~~-~iG~v~Q~~~~--------~i~~g~~~  147 (189)
                      +||+.+|+||||||||||.++|+|.-  +.+ |+|.++|.||..+++.++.+ .|...||.|.+        ++......
T Consensus        29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~  108 (251)
T COG0396          29 EGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNA  108 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHh
Confidence            59999999999999999999999986  456 99999999999998888755 78888999871        22211100


Q ss_pred             -----CCChHHHHHHHHHHHhhcCCch-hhcccccc-CChHHHHhhhc
Q 029723          148 -----HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGGNLQTISF  188 (189)
Q Consensus       148 -----~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~e-LSGGqrq~~~~  188 (189)
                           .. ..+...++.++++.|++.+ .+++.+.+ +|||||+|..|
T Consensus       109 ~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei  155 (251)
T COG0396         109 RRGARGI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI  155 (251)
T ss_pred             hhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence                 11 2345678889999999986 67887775 99999999876

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.74  E-value=2.9e-18  Score=155.06  Aligned_cols=114  Identities=22%  Similarity=0.224  Sum_probs=85.4

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+...+++|.-. |+.++||||+|||||||.|+|.|..+|. |.|.++|-++...+..++-+.|||+||+-.       +
T Consensus       349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIae  428 (580)
T COG4618         349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAE  428 (580)
T ss_pred             CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHH
Confidence            467778888765 8999999999999999999999999998 999999999998888899999999999864       4


Q ss_pred             HHHhcCCCCCChHHHHHH---------HHHHHhhcCCchhhcccc----ccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISI---------NLGPLEELSNLFKADLLL----CESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~---------v~~~L~~lgL~~~~~~~~----~eLSGGqrq~~~~i  189 (189)
                      ||.--. +..    |.+.         +.+++-.|  ..-.+..+    ..||||||||++++
T Consensus       429 NIaRf~-~~~----d~~kIieAA~lAgvHelIl~l--P~GYdT~iG~~G~~LSgGQRQRIaLA  484 (580)
T COG4618         429 NIARFG-EEA----DPEKVIEAARLAGVHELILRL--PQGYDTRIGEGGATLSGGQRQRIALA  484 (580)
T ss_pred             HHHhcc-ccC----CHHHHHHHHHHcChHHHHHhC--cCCccCccCCCCCCCCchHHHHHHHH
Confidence            432111 011    2222         33344333  22233443    46999999999874

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.74  E-value=6.8e-18  Score=164.97  Aligned_cols=116  Identities=18%  Similarity=0.184  Sum_probs=92.0

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+..++.+|.-+ |+.++||||+||||||++.+|-+++.|+ |.|.++|.|+.+.+...+|++|+.|.|+|.       +
T Consensus      1003 ~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrE 1082 (1228)
T KOG0055|consen 1003 VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRE 1082 (1228)
T ss_pred             chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHH
Confidence            466677777765 8999999999999999999999999998 999999999999999999999999999997       7


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhh---------c--CCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEE---------L--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~---------l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      |+.+|... ..    .+++.++++.         |  |++.....+-.+||||||||+||+
T Consensus      1083 NI~YG~~~-vs----~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1083 NIAYGSEE-VS----EEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred             HHhccCCC-CC----HHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHH
Confidence            88888333 32    2333333333         2  223334445568999999999985

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.74  E-value=6.8e-19  Score=142.07  Aligned_cols=95  Identities=14%  Similarity=0.126  Sum_probs=67.9

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc--CC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCC
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC  146 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~--p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~  146 (189)
                      ...+++|. .+|++++|+|||||||||||++|+|+++  |+ |+|.+++.++.    ..+++.++|++|++..+      
T Consensus        22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i~~~~q~~~~~------   91 (192)
T cd03232          22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDVHS------   91 (192)
T ss_pred             eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhceEEecccCccc------
Confidence            55666776 4699999999999999999999999863  67 99999998874    34567899999975311      


Q ss_pred             CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       147 ~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+...+..... ..+             .+|||||+||++|+
T Consensus        92 ~~~tv~~~l~~~-~~~-------------~~LSgGe~qrv~la  120 (192)
T cd03232          92 PNLTVREALRFS-ALL-------------RGLSVEQRKRLTIG  120 (192)
T ss_pred             cCCcHHHHHHHH-HHH-------------hcCCHHHhHHHHHH
Confidence            112221111110 000             19999999999874

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=5.3e-18  Score=154.16  Aligned_cols=121  Identities=13%  Similarity=0.087  Sum_probs=95.5

Q ss_pred             CCCCC-CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--
Q 029723           64 YFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--  138 (189)
Q Consensus        64 ~~~~~-~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--  138 (189)
                      .|+++ .++.++++|.-+ ||.++|+|++|||||||+++|+|.+.|+ |+|.++|.++...+++++++.|+++.|.+.  
T Consensus       345 ~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF  424 (573)
T COG4987         345 TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF  424 (573)
T ss_pred             ecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH
Confidence            33443 367788888765 9999999999999999999999999999 999999999998888889999999999865  


Q ss_pred             -----HHHHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723          139 -----RAVETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -----~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i  189 (189)
                           +|+.++... .    ..+.+.++|++++|.+....           --..||||||||++++
T Consensus       425 ~~Tlr~NL~lA~~~-A----sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA  486 (573)
T COG4987         425 SGTLRDNLRLANPD-A----SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA  486 (573)
T ss_pred             HHHHHHHHhhcCCC-C----CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence                 444444322 2    34567778888888654332           2356999999999874

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.74  E-value=3.7e-18  Score=138.08  Aligned_cols=97  Identities=21%  Similarity=0.234  Sum_probs=70.1

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc--cCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcC
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG  145 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~  145 (189)
                      ...++++|.- +|++++|+|||||||||||++|+|++  +|+ |+|.++|.++..   ..+++.++|++|++..      
T Consensus        23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~------   93 (194)
T cd03213          23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFRKIIGYVPQDDIL------   93 (194)
T ss_pred             cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---HhhhheEEEccCcccC------
Confidence            3556666664 59999999999999999999999999  988 999999998753   2456789999998531      


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       146 ~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .+.+...++....    ..          +.+||+||+||++|+
T Consensus        94 ~~~~t~~~~i~~~----~~----------~~~LS~G~~qrv~la  123 (194)
T cd03213          94 HPTLTVRETLMFA----AK----------LRGLSGGERKRVSIA  123 (194)
T ss_pred             CCCCcHHHHHHHH----HH----------hccCCHHHHHHHHHH
Confidence            1122222211110    00          119999999999874

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.73  E-value=3.8e-18  Score=157.63  Aligned_cols=107  Identities=16%  Similarity=0.149  Sum_probs=77.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.           ..|+||+|++.        ++
T Consensus        20 il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~v~Q~~~~~~~~tv~e~   88 (552)
T TIGR03719        20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-----------IKVGYLPQEPQLDPTKTVREN   88 (552)
T ss_pred             eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEeccCCCCCCCcHHHH
Confidence            455666654 58999999999999999999999999998 99988641           36899999864        33


Q ss_pred             HHhcCCCC---------------CChHH----------------------HHHHHHHHHhhcCCchhhccccccCChHHH
Q 029723          141 VETGGCPH---------------AAIRE----------------------DISINLGPLEELSNLFKADLLLCESGGGNL  183 (189)
Q Consensus       141 i~~g~~~~---------------~~~~~----------------------d~~~v~~~L~~lgL~~~~~~~~~eLSGGqr  183 (189)
                      +.++....               ....+                      ...++.++|+.+++.. .++++.+||||||
T Consensus        89 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqk  167 (552)
T TIGR03719        89 VEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGER  167 (552)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHH
Confidence            33321100               00000                      1134566788888853 6889999999999


Q ss_pred             HhhhcC
Q 029723          184 QTISFI  189 (189)
Q Consensus       184 q~~~~i  189 (189)
                      |||+|+
T Consensus       168 qrv~la  173 (552)
T TIGR03719       168 RRVALC  173 (552)
T ss_pred             HHHHHH
Confidence            999874

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.73  E-value=3.9e-18  Score=134.96  Aligned_cols=86  Identities=24%  Similarity=0.258  Sum_probs=64.1

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCC
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH  148 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~  148 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.+++.           +.++|++|++..       ..
T Consensus        16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~q~~~~-------~~   77 (166)
T cd03223          16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFLPQRPYL-------PL   77 (166)
T ss_pred             eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEECCCCcc-------cc
Confidence            44556666 369999999999999999999999999998 99998752           479999998631       11


Q ss_pred             CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          149 AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       149 ~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ....++       +.. .       .+.+||+|||||++|+
T Consensus        78 ~tv~~n-------l~~-~-------~~~~LS~G~~~rv~la  103 (166)
T cd03223          78 GTLREQ-------LIY-P-------WDDVLSGGEQQRLAFA  103 (166)
T ss_pred             ccHHHH-------hhc-c-------CCCCCCHHHHHHHHHH
Confidence            111111       111 0       5789999999999874

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.73  E-value=2.9e-18  Score=145.51  Aligned_cols=120  Identities=16%  Similarity=0.043  Sum_probs=91.9

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHH-------
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------  139 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~-------  139 (189)
                      .++..+++|.-+ |++++++|+|||||||+||+|+|++.|+ |.|.|+|.+.+. +..++.+.+++|+-....       
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~  115 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPA  115 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechh
Confidence            457778888765 9999999999999999999999999999 999999999864 556677888887644320       


Q ss_pred             --HHHhc-CCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 --AVETG-GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 --~i~~g-~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        -+... ........+-.++...+.+.|+|+..++.++..||-|||.|+.++
T Consensus       116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLa  168 (325)
T COG4586         116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELA  168 (325)
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHH
Confidence              00000 001112233456788888999999999999999999999998763

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=1.8e-18  Score=162.59  Aligned_cols=119  Identities=13%  Similarity=-0.033  Sum_probs=79.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC----CCCchHHHhhhceeccchhHHHHHh-
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI----FTKEDGEFLMRNGALPEERIRAVET-  143 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di----~~~~~~~~~~~iG~v~Q~~~~~i~~-  143 (189)
                      .+.+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+.+...    ........+..++||+|.+.....+ 
T Consensus        16 ~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~   95 (638)
T PRK10636         16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLE   95 (638)
T ss_pred             eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHH
Confidence            455666655 58999999999999999999999999998 9999887531    1101111123567777643311100 


Q ss_pred             -----cC--CC------------CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          144 -----GG--CP------------HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       144 -----g~--~~------------~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                           ..  ..            .........++.++|+.|++. ...++++.+|||||||||+|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA  161 (638)
T PRK10636         96 AQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLA  161 (638)
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHH
Confidence                 00  00            000011235788899999996 467999999999999999974

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.73  E-value=7.2e-18  Score=135.78  Aligned_cols=120  Identities=19%  Similarity=0.160  Sum_probs=88.0

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec-----CCCCCchHHHh----hhceeccchhH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN-----DIFTKEDGEFL----MRNGALPEERI  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~-----di~~~~~~~~~----~~iG~v~Q~~~  138 (189)
                      +-..+++|.- +||+++|+|.+||||||||+||++.+.|+ |+|.+...     ++......+++    ...|||-|+|.
T Consensus        20 ~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~   99 (258)
T COG4107          20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR   99 (258)
T ss_pred             cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence            3445667765 59999999999999999999999999999 99999874     44444444443    36899999997


Q ss_pred             HHHHhcCCCCC-------C-----hHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHA-------A-----IREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~-------~-----~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .-+.+......       .     +-.....+.++|+++.++. ..+..|..+|||||||+.|+
T Consensus       100 DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiA  163 (258)
T COG4107         100 DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIA  163 (258)
T ss_pred             ccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHH
Confidence            32221111100       0     1234556788999999974 67899999999999999764

>PLN03073 ABC transporter F family; Provisional

Probab=99.73  E-value=6.4e-18  Score=160.75  Aligned_cols=104  Identities=14%  Similarity=0.139  Sum_probs=79.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHH------H--
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------A--  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~------~--  140 (189)
                      .+.+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+.+.           ..|+|++|++..      +  
T Consensus       524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-----------~~igyv~Q~~~~~l~~~~~~~  592 (718)
T PLN03073        524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------VRMAVFSQHHVDGLDLSSNPL  592 (718)
T ss_pred             eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-----------eeEEEEeccccccCCcchhHH
Confidence            455666664 58999999999999999999999999998 99987531           368999997531      1  


Q ss_pred             HHhc-CCCCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          141 VETG-GCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g-~~~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+. ....    ...+++.++|+.+++.. ..++++.+||||||||++|+
T Consensus       593 ~~~~~~~~~----~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLA  639 (718)
T PLN03073        593 LYMMRCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA  639 (718)
T ss_pred             HHHHHhcCC----CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHH
Confidence            1110 0011    12456788999999974 67899999999999999874

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.73  E-value=7.3e-18  Score=135.10  Aligned_cols=122  Identities=19%  Similarity=0.156  Sum_probs=90.8

Q ss_pred             CCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec----CCCCCchHH----Hhhhceeccchh
Q 029723           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGE----FLMRNGALPEER  137 (189)
Q Consensus        68 ~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~----di~~~~~~~----~~~~iG~v~Q~~  137 (189)
                      +++...+++|+-+ |||++|-||+|||||||||+|.+-+.|+ |+|.+.-.    |+...++.+    +++.||||.|..
T Consensus        23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL  102 (235)
T COG4778          23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL  102 (235)
T ss_pred             EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence            3677788888876 7999999999999999999999999999 99998653    333444444    245799999974


Q ss_pred             H-----HHHHhcCCC----CCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          138 I-----RAVETGGCP----HAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       138 ~-----~~i~~g~~~----~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .     ..++.-..+    .........++..+|.+|++.+ .....|.++||||||||.|+
T Consensus       103 RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIa  164 (235)
T COG4778         103 RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIA  164 (235)
T ss_pred             HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhh
Confidence            3     111111111    1222334567889999999976 67889999999999999874

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.73  E-value=7e-18  Score=170.78  Aligned_cols=115  Identities=16%  Similarity=0.150  Sum_probs=90.8

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      .+..++++|.- +|+.++|+|++|||||||+++|+|++.++|+|.|+|.|+.+.+..++|++|+||||+|.       +|
T Consensus      1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271      1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred             cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence            45667777765 48999999999999999999999999745999999999998888899999999999986       44


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccc-------c----ccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLL-------L----CESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~-------~----~eLSGGqrq~~~~i  189 (189)
                      +....      ....+++.++|+.++|.+.....       +    ..|||||||+++|+
T Consensus      1312 Ldp~~------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LA 1365 (1490)
T TIGR01271      1312 LDPYE------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLA 1365 (1490)
T ss_pred             hCccc------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHH
Confidence            43211      11356777888888876533322       2    36999999999874

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.73  E-value=5.4e-18  Score=170.65  Aligned_cols=116  Identities=11%  Similarity=0.024  Sum_probs=89.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc---CC-ccEEEeecCCCCCchHHHhhhceeccchhH------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~---p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------  138 (189)
                      ...+++++.- +|++++|+|||||||||||++|+|+++   ++ |+|.++|.++.    .++++.++||+|++.      
T Consensus       777 ~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~T  852 (1394)
T TIGR00956       777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTST  852 (1394)
T ss_pred             EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCC
Confidence            3455666654 589999999999999999999999987   67 99999999873    246678999999853      


Q ss_pred             --HHHHhcCCCC----CChHHHHHHHHHHHhhcCCchhhccccc----cCChHHHHhhhcC
Q 029723          139 --RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLC----ESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~~~~~~----eLSGGqrq~~~~i  189 (189)
                        +++.+.....    ....+..++++++|+.++|.+..++.+.    +||||||||++|+
T Consensus       853 v~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia  913 (1394)
T TIGR00956       853 VRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIG  913 (1394)
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHH
Confidence              4454432111    1222334678899999999888888887    7999999999874

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=4.8e-18  Score=159.70  Aligned_cols=108  Identities=16%  Similarity=0.102  Sum_probs=78.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhc--CC
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG--GC  146 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g--~~  146 (189)
                      ...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+.+.           ..+||++|++...+...  ..
T Consensus       327 il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy~~Q~~~~~l~~~~~~~  395 (638)
T PRK10636        327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGYFAQHQLEFLRADESPL  395 (638)
T ss_pred             eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEEecCcchhhCCccchHH
Confidence            445556554 59999999999999999999999999998 99988631           25899999742111000  00


Q ss_pred             ---CCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          147 ---PHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       147 ---~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                         ...........+.++|+.|++.. ..++++.+|||||||||+|+
T Consensus       396 ~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La  442 (638)
T PRK10636        396 QHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA  442 (638)
T ss_pred             HHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHH
Confidence               00011123456788999999963 67899999999999999974

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.72  E-value=9.8e-18  Score=158.14  Aligned_cols=109  Identities=17%  Similarity=0.033  Sum_probs=80.1

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      ....+++|.- +|++++|+||||||||||+++|+|+++|+ |+|.+++           ++.++||+|++.       ++
T Consensus       466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~en  534 (659)
T TIGR00954       466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQ  534 (659)
T ss_pred             eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHH
Confidence            3555666664 59999999999999999999999999998 9987642           347999999974       55


Q ss_pred             HHhcCCCCC--ChHHHHHHHHHHHhhcCCchhhcccc---------ccCChHHHHhhhcC
Q 029723          141 VETGGCPHA--AIREDISINLGPLEELSNLFKADLLL---------CESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~--~~~~d~~~v~~~L~~lgL~~~~~~~~---------~eLSGGqrq~~~~i  189 (189)
                      +.++.....  ......+++.++|+.+++.+..+++.         .+||||||||++|+
T Consensus       535 i~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA  594 (659)
T TIGR00954       535 IIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA  594 (659)
T ss_pred             HhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence            554421100  00012356778899999976655533         68999999999974

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.72  E-value=1.1e-17  Score=143.37  Aligned_cols=100  Identities=16%  Similarity=0.073  Sum_probs=69.0

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.+++             .++|++|++.       +++
T Consensus        52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl  118 (282)
T cd03291          52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENI  118 (282)
T ss_pred             ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EEEEEeCcccccccCHHHHh
Confidence            45566666 469999999999999999999999999998 9999876             3788888864       222


Q ss_pred             HhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++..  ..    ...+.++++.+++...           .+..+.+||+|||||++|+
T Consensus       119 ~~~~~--~~----~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lA  171 (282)
T cd03291         119 IFGVS--YD----EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA  171 (282)
T ss_pred             hcccc--cC----HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHH
Confidence            22211  11    1122333444444322           2334679999999999874

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.71  E-value=9.3e-18  Score=137.81  Aligned_cols=107  Identities=11%  Similarity=-0.065  Sum_probs=69.3

Q ss_pred             ccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEE-EeecCCCCCchHHHhhhceeccch--hHHHHHhcCC-
Q 029723           73 LSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-AVTNDIFTKEDGEFLMRNGALPEE--RIRAVETGGC-  146 (189)
Q Consensus        73 ~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~-i~g~di~~~~~~~~~~~iG~v~Q~--~~~~i~~g~~-  146 (189)
                      ++++|.- +|++++|+|||||||||||++|+|+++|+ |+|. +++..+. ..     ... .++..  ..+++.+... 
T Consensus         4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-~~-----~~~-~l~~~ltv~enl~~~~~~   76 (213)
T PRK15177          4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-LG-----ANS-FILPGLTGEENARMMASL   76 (213)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-cc-----ccc-ccCCcCcHHHHHHHHHHH
Confidence            4445544 58999999999999999999999999998 9997 6664431 10     111 12222  1244443211 


Q ss_pred             CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       147 ~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .....   .+....+++.++|....++++.+||+|||||++|+
T Consensus        77 ~~~~~---~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la  116 (213)
T PRK15177         77 YGLDG---DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFA  116 (213)
T ss_pred             cCCCH---HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHH
Confidence            11111   11122334556777778899999999999999874

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.71  E-value=1.5e-17  Score=152.78  Aligned_cols=113  Identities=15%  Similarity=0.060  Sum_probs=79.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh-HHHHHhcCC-
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVETGGC-  146 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~-~~~i~~g~~-  146 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.+..      +....++.++.. .+++.+... 
T Consensus        39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~------i~~~~~l~~~lTV~EnL~l~~~~  112 (549)
T PRK13545         39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL------IAISSGLNGQLTGIENIELKGLM  112 (549)
T ss_pred             EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee------EEeccccCCCCcHHHHHHhhhhh
Confidence            456666664 69999999999999999999999999998 99999886521      000112222212 244433211 


Q ss_pred             CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       147 ~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ......+..+++.++|+.++|....++++.+||||||||++|+
T Consensus       113 ~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLA  155 (549)
T PRK13545        113 MGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFA  155 (549)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHH
Confidence            1122223345677899999998888999999999999999874

>PLN03140 ABC transporter G family member; Provisional

Probab=99.70  E-value=2.8e-17  Score=165.90  Aligned_cols=117  Identities=12%  Similarity=0.009  Sum_probs=87.7

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCCCCCchHHHhhhceeccchhH-------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------  138 (189)
                      ...+++++.- +|++++|+|||||||||||++|+|+.++  . |+|.++|.++.   ...+++.+|||+|++.       
T Consensus       894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~---~~~~~~~igyv~Q~d~~~~~lTV  970 (1470)
T PLN03140        894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK---QETFARISGYCEQNDIHSPQVTV  970 (1470)
T ss_pred             eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC---hHHhhhheEEEccccccCCCCcH
Confidence            3455555554 5899999999999999999999999874  4 99999998753   2345677999999864       


Q ss_pred             -HHHHhcCCCC----CChHHHHHHHHHHHhhcCCchhhcccc-----ccCChHHHHhhhcC
Q 029723          139 -RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLL-----CESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~~~~~-----~eLSGGqrq~~~~i  189 (189)
                       +++.+.....    ....+..++++++|+.++|....++++     ..|||||||||+|+
T Consensus       971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa 1031 (1470)
T PLN03140        971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIA 1031 (1470)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHH
Confidence             4444432111    122233456889999999988778876     58999999999974

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.70  E-value=1.8e-17  Score=146.99  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=95.0

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccC------CccEEEeecCCCCCchHHHhh----hceeccchh
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTKEDGEFLM----RNGALPEER  137 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p------~G~I~i~g~di~~~~~~~~~~----~iG~v~Q~~  137 (189)
                      ..+.+.++|.-. ||+++|||.+|||||-..+.|+++++.      +|+|.++|.|+...+..++++    +|+++||+|
T Consensus        23 ~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEP  102 (534)
T COG4172          23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEP  102 (534)
T ss_pred             eEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEeccc
Confidence            345677777765 999999999999999999999999873      489999999998887777654    799999998


Q ss_pred             H----------HHHHhcCCC--CCChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723          138 I----------RAVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       138 ~----------~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .          .++.-....  .+..+..+.++.++|+.++|.+   .++.+|.+|||||||||.|+
T Consensus       103 MtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIA  169 (534)
T COG4172         103 MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIA  169 (534)
T ss_pred             ccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHH
Confidence            6          111111111  2233456778999999999964   57899999999999999864

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.69  E-value=9e-18  Score=135.18  Aligned_cols=110  Identities=13%  Similarity=0.082  Sum_probs=88.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCC----ChHHH
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA----AIRED  154 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~----~~~~d  154 (189)
                      ..||++-+||||||||||||..++|+++.+|+|.+.|.++......++.|.-+|+.|+..-...+..+.++    .-++.
T Consensus        23 ~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~  102 (248)
T COG4138          23 RAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTR  102 (248)
T ss_pred             ccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHH
Confidence            35999999999999999999999999998899999999998888888888889998764411111111122    22345


Q ss_pred             HHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          155 ISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       155 ~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                      ...+.++...++|.+++.+.+..|||||-|||-+
T Consensus       103 a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRL  136 (248)
T COG4138         103 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL  136 (248)
T ss_pred             HHHHHHHHhhhcccchhhhhhhhcCcccceeeEE
Confidence            5678888999999999999999999999999854

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.69  E-value=1.5e-17  Score=133.81  Aligned_cols=49  Identities=24%  Similarity=0.137  Sum_probs=42.6

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      -.++|++++|+|||||||||||++|+|+++|+ |+|.+++.+            ++|++|++
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~~   70 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQYI   70 (177)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcccC
Confidence            33579999999999999999999999999998 999998742            67888753

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.69  E-value=1.9e-17  Score=149.77  Aligned_cols=124  Identities=19%  Similarity=0.230  Sum_probs=86.8

Q ss_pred             CCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----
Q 029723           65 FSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (189)
Q Consensus        65 ~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----  138 (189)
                      |..+.+...+++|... |++++||||+|+||||+||+|.++..-+ |.|.|+|+||.......+|+.||+|||+..    
T Consensus       547 Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd  626 (790)
T KOG0056|consen  547 YDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND  626 (790)
T ss_pred             cCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc
Confidence            3445566777777764 8999999999999999999999999877 999999999987777888999999999975    


Q ss_pred             ---HHHHhcCCCCCChHHHHH--HHHHHH-hhcCCchhhccccc----cCChHHHHhhhcC
Q 029723          139 ---RAVETGGCPHAAIREDIS--INLGPL-EELSNLFKADLLLC----ESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~~~~~~~d~~--~v~~~L-~~lgL~~~~~~~~~----eLSGGqrq~~~~i  189 (189)
                         .|+.++... ..-++..+  ++..+= ..+++.+..+.++.    .||||||||||++
T Consensus       627 TI~yNIryak~~-AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA  686 (790)
T KOG0056|consen  627 TILYNIRYAKPS-ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA  686 (790)
T ss_pred             eeeeheeecCCC-CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence               344443221 11111111  111111 11344444444444    5999999999974

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.69  E-value=2.7e-17  Score=128.32  Aligned_cols=65  Identities=23%  Similarity=0.323  Sum_probs=54.3

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccc
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q  135 (189)
                      ...+.+|. .+|++++|+|+|||||||||++|+|+++|+ |+|.+++.++......++.+.++|++|
T Consensus        14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q   80 (157)
T cd00267          14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ   80 (157)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence            44455555 468999999999999999999999999998 999999988765445566678999988

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.69  E-value=1.9e-17  Score=166.70  Aligned_cols=119  Identities=8%  Similarity=-0.079  Sum_probs=84.3

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc----cCC-ccEEEeecCCCCCchHHHhhhceeccchhH-----
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL----RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll----~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-----  138 (189)
                      ...+++++.- +|++++|+||||||||||||+|+|++    +|. |+|.++|.++.... ..+++.++|++|+..     
T Consensus        75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~l  153 (1394)
T TIGR00956        75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPHL  153 (1394)
T ss_pred             eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCCC
Confidence            3455555554 59999999999999999999999986    456 99999998874322 234567999999854     


Q ss_pred             ---HHHHhcCCCC--------CChHHHHHH-HHHHHhhcCCchhhccc-----cccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCPH--------AAIREDISI-NLGPLEELSNLFKADLL-----LCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~~--------~~~~~d~~~-v~~~L~~lgL~~~~~~~-----~~eLSGGqrq~~~~i  189 (189)
                         +++.+.....        ....+..++ ++.+|+.++|....+++     +..|||||||||+|+
T Consensus       154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA  221 (1394)
T TIGR00956       154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA  221 (1394)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHH
Confidence               4554432211        111222223 45689999998766554     567999999999974

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.68  E-value=5.6e-17  Score=130.29  Aligned_cols=90  Identities=14%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCC
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~  147 (189)
                      ..+..+++|.-+ |++++|+|||||||||||++|.+   ..|++.+++... ..    .++.++|++|            
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~-~~----~~~~~~~~~q------------   67 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLP-KF----SRNKLIFIDQ------------   67 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCccc-cc----ccccEEEEhH------------
Confidence            344566666655 89999999999999999999853   349998876521 11    1235777766            


Q ss_pred             CCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          148 HAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       148 ~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                                 .++|+.++|.. ..++++.+||+|||||++|+
T Consensus        68 -----------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~la   99 (176)
T cd03238          68 -----------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLA   99 (176)
T ss_pred             -----------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHH
Confidence                       35788889875 37889999999999999874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.66  E-value=9e-17  Score=155.96  Aligned_cols=119  Identities=19%  Similarity=0.075  Sum_probs=95.1

Q ss_pred             CcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch-HHHhhhceeccchhHHHHHhcCC-
Q 029723           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETGGC-  146 (189)
Q Consensus        71 ~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~~~~i~~g~~-  146 (189)
                      +.++++|.-+ |||+|++|+|||||||++++|+|..+|+ |++.+.|.++..... .+.++.+||+||.......+..+ 
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE  659 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE  659 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence            6667777765 8999999999999999999999999999 999999999965433 34678999999986522222222 


Q ss_pred             --------CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          147 --------PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       147 --------~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                              ..+......+.+..+|+.++|.+.++++++.+|||+|+|++|+
T Consensus       660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~a  710 (885)
T KOG0059|consen  660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFA  710 (885)
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHH
Confidence                    2222234456688999999999999999999999999999874

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.66  E-value=5.1e-17  Score=152.62  Aligned_cols=117  Identities=15%  Similarity=0.036  Sum_probs=75.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC-CCCchHHHhhhceeccchhH---------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFLMRNGALPEERI---------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di-~~~~~~~~~~~iG~v~Q~~~---------  138 (189)
                      .+.+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++... ...........+++++|...         
T Consensus        18 il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~   97 (635)
T PRK11147         18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEY   97 (635)
T ss_pred             eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHH
Confidence            556666664 59999999999999999999999999998 9999876321 00000001123444544321         


Q ss_pred             ----HHHHh--cCC----------------CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVET--GGC----------------PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~--g~~----------------~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          ..+..  ...                ..........++.++|+.|++.  .++++.+|||||||||+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LA  168 (635)
T PRK11147         98 LKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALG  168 (635)
T ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHH
Confidence                00000  000                0000001245678899999997  3889999999999999974

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.65  E-value=1.7e-16  Score=148.81  Aligned_cols=116  Identities=19%  Similarity=0.161  Sum_probs=90.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC---C-ccEEEeecCCCCCchHHHhhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD---K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p---~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------  138 (189)
                      ..+++.... +||+++|+||+||||||||++|+|....   . |+|.+||+..   ..+.+++.+|||.|+..       
T Consensus        45 iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~~~~~~s~yV~QdD~l~~~LTV  121 (613)
T KOG0061|consen   45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSRSFRKISGYVQQDDVLLPTLTV  121 (613)
T ss_pred             eeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chhhhhheeEEEcccccccccccH
Confidence            445555544 5999999999999999999999999864   3 9999999544   45567788999999865       


Q ss_pred             -HHHHhcCCCC----CChHHHHHHHHHHHhhcCCchhhccccc-----cCChHHHHhhhcC
Q 029723          139 -RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLC-----ESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~~~~~~-----eLSGGqrq~~~~i  189 (189)
                       +.+.+.....    +...+..+++++++++|+|....+..+.     .+|||||+||+|+
T Consensus       122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia  182 (613)
T KOG0061|consen  122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA  182 (613)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence             3333332222    2335667899999999999988888886     4999999999974

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.65  E-value=1.8e-16  Score=146.18  Aligned_cols=100  Identities=19%  Similarity=0.136  Sum_probs=72.6

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPH  148 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~  148 (189)
                      ..+|++|||||+|||||||||++|+|.+.|+ |+|.+... +          +++|+.|++.        ..+..+....
T Consensus        26 ~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-~----------~v~~l~Q~~~~~~~~tv~~~v~~~~~~~   94 (530)
T COG0488          26 LNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-L----------RVGYLSQEPPLDPEKTVLDYVIEGFGEL   94 (530)
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-c----------eEEEeCCCCCcCCCccHHHHHHhhhHHH
Confidence            3369999999999999999999999999998 99977643 1          4778777764        1111111100


Q ss_pred             CCh-------------------------------HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          149 AAI-------------------------------REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       149 ~~~-------------------------------~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ...                               .+...++..+|..|++... ++++.+||||||.||+++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA  165 (530)
T COG0488          95 RELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALA  165 (530)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHH
Confidence            000                               0112467788888999866 999999999999999874

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.65  E-value=1.3e-16  Score=123.67  Aligned_cols=54  Identities=15%  Similarity=0.214  Sum_probs=45.9

Q ss_pred             CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccc
Q 029723           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (189)
Q Consensus        71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q  135 (189)
                      ...+++|. .+|++++|+|+||||||||+++|+|+++|+ |+|.+++.           +.++|++|
T Consensus        15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~~   70 (144)
T cd03221          15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYFEQ   70 (144)
T ss_pred             EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEEcc
Confidence            44555665 369999999999999999999999999998 99999873           36889888

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.64  E-value=1.3e-16  Score=161.03  Aligned_cols=117  Identities=16%  Similarity=0.064  Sum_probs=83.9

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC----CccEEEeecCCCCCchHHHhhhceeccchhH------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p----~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------  138 (189)
                      ...+++++.- +|++++|+|||||||||||++|+|+++|    +|+|.++|.++....   .++.++||+|+..      
T Consensus       179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~lT  255 (1470)
T PLN03140        179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVMT  255 (1470)
T ss_pred             eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcCc
Confidence            3455666554 5999999999999999999999999987    499999998874322   2567999999853      


Q ss_pred             --HHHHhcCCCC-----------CChHHH------------------------HHHHHHHHhhcCCchhh-----ccccc
Q 029723          139 --RAVETGGCPH-----------AAIRED------------------------ISINLGPLEELSNLFKA-----DLLLC  176 (189)
Q Consensus       139 --~~i~~g~~~~-----------~~~~~d------------------------~~~v~~~L~~lgL~~~~-----~~~~~  176 (189)
                        +++.+...+.           ...++.                        ...++.+|+.++|....     +..+.
T Consensus       256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r  335 (1470)
T PLN03140        256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR  335 (1470)
T ss_pred             HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence              4554432211           000110                        01346789999997543     56778


Q ss_pred             cCChHHHHhhhcC
Q 029723          177 ESGGGNLQTISFI  189 (189)
Q Consensus       177 eLSGGqrq~~~~i  189 (189)
                      .|||||||||+|+
T Consensus       336 glSGGerkRVsia  348 (1470)
T PLN03140        336 GISGGQKKRVTTG  348 (1470)
T ss_pred             CCCcccceeeeeh
Confidence            9999999999874

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.62  E-value=1.2e-16  Score=130.04  Aligned_cols=94  Identities=14%  Similarity=0.030  Sum_probs=69.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC----------ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK----------YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA  149 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~----------G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~  149 (189)
                      +| +++|+|||||||||||++|++++.+.          +.+.+.+.++..   ....+.++++||++..+  ++.    
T Consensus        22 ~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~--~~~----   91 (197)
T cd03278          22 PG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR--YSI----   91 (197)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc--eeE----
Confidence            46 99999999999999999999998553          356666666532   12346899999998644  111    


Q ss_pred             ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .   ...++.++++.   ....++.+.+||+||||+++|+
T Consensus        92 ~---~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la  125 (197)
T cd03278          92 I---SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALA  125 (197)
T ss_pred             E---ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHH
Confidence            0   13466777777   3456889999999999999874

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=7.5e-16  Score=137.09  Aligned_cols=122  Identities=20%  Similarity=0.242  Sum_probs=86.0

Q ss_pred             CCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----
Q 029723           65 FSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (189)
Q Consensus        65 ~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----  138 (189)
                      |..+.+..++.+|.-+ |+.++|+|++|+||||++++|.+++.++ |.|.++++|+.......+++.||.|||+..    
T Consensus       272 y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND  351 (497)
T COG5265         272 YDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND  351 (497)
T ss_pred             ccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh
Confidence            3445556666666665 8999999999999999999999999998 999999999987777788999999999975    


Q ss_pred             ---HHHHhcCCCCCChHHH-----HHHHHHHHhhcCCchhhccccc----cCChHHHHhhhcC
Q 029723          139 ---RAVETGGCPHAAIRED-----ISINLGPLEELSNLFKADLLLC----ESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~~~~~~~d-----~~~v~~~L~~lgL~~~~~~~~~----eLSGGqrq~~~~i  189 (189)
                         .++.++... ..-.+.     ...+...++.+  ++..+..+.    .|||||||||+++
T Consensus       352 ti~yni~ygr~~-at~eev~aaa~~aqi~~fi~~l--P~gy~t~VgerglklSggekqrvaia  411 (497)
T COG5265         352 TIAYNIKYGRPD-ATAEEVGAAAEAAQIHDFIQSL--PEGYDTGVGERGLKLSGGEKQRVAIA  411 (497)
T ss_pred             hHHHHHhccCcc-ccHHHHHHHHHHhhhhHHHHhC--chhhhcccchheeeccCchHHHHHHH
Confidence               334444322 211111     11122223332  233344444    5999999999974

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.61  E-value=6.4e-16  Score=156.65  Aligned_cols=107  Identities=15%  Similarity=0.129  Sum_probs=72.4

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|             .|+|++|++.       +|
T Consensus       440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eN  506 (1490)
T TIGR01271       440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDN  506 (1490)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHH
Confidence            3456666654 59999999999999999999999999998 9999876             3899999874       66


Q ss_pred             HHhcCCCCCC-hHHHH--HHHHHHHhhcCCc--hhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAA-IREDI--SINLGPLEELSNL--FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~-~~~d~--~~v~~~L~~lgL~--~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++...... ..+..  ..+.+.|+.+...  ........+||||||||++|+
T Consensus       507 I~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lA  560 (1490)
T TIGR01271       507 IIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLA  560 (1490)
T ss_pred             HHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHH
Confidence            6665321100 00000  0112223333211  123456789999999999974

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03073 ABC transporter F family; Provisional

Probab=99.61  E-value=1.3e-15  Score=145.14  Aligned_cols=119  Identities=17%  Similarity=0.096  Sum_probs=78.6

Q ss_pred             CcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcc---cCC-ccEEEeecCCCCCc--h--------H----HHhhhce
Q 029723           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFL---RDK-YSLAAVTNDIFTKE--D--------G----EFLMRNG  131 (189)
Q Consensus        71 ~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll---~p~-G~I~i~g~di~~~~--~--------~----~~~~~iG  131 (189)
                      .+.+++|.-. |+++||||+|||||||||++|+|+.   .|+ |+|.+.++++....  .        .    .+++.++
T Consensus       192 ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~  271 (718)
T PLN03073        192 LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQ  271 (718)
T ss_pred             EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence            5666666654 8999999999999999999999863   456 99988776542111  1        0    0133578


Q ss_pred             eccchhHHHHHh------cCC-CCCChH-------------------HHHHHHHHHHhhcCCc-hhhccccccCChHHHH
Q 029723          132 ALPEERIRAVET------GGC-PHAAIR-------------------EDISINLGPLEELSNL-FKADLLLCESGGGNLQ  184 (189)
Q Consensus       132 ~v~Q~~~~~i~~------g~~-~~~~~~-------------------~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq  184 (189)
                      +++|.+......      ... ......                   ....++.++|..|++. ...++++.+|||||||
T Consensus       272 ~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~  351 (718)
T PLN03073        272 LVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRM  351 (718)
T ss_pred             HHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHH
Confidence            888865422110      000 000000                   1234567788888986 4578899999999999


Q ss_pred             hhhcC
Q 029723          185 TISFI  189 (189)
Q Consensus       185 ~~~~i  189 (189)
                      ||+|+
T Consensus       352 rv~LA  356 (718)
T PLN03073        352 RIALA  356 (718)
T ss_pred             HHHHH
Confidence            99974

>PLN03232 ABC transporter C family member; Provisional

Probab=99.60  E-value=8.8e-16  Score=155.70  Aligned_cols=102  Identities=20%  Similarity=0.149  Sum_probs=75.9

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +...+++|.- +|++++|+||+||||||||++|+|+++|. |.+.            .+++.|+||+|+|.       +|
T Consensus       631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~Lf~gTIreN  698 (1495)
T PLN03232        631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWIFNATVREN  698 (1495)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccccccccHHHH
Confidence            3456666655 59999999999999999999999999998 8764            13457999999986       77


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhc-----------cccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKAD-----------LLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~-----------~~~~eLSGGqrq~~~~i  189 (189)
                      +.++..  .    +.+++.++++.++|.+...           ..-..||||||||++|+
T Consensus       699 I~fg~~--~----~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA  752 (1495)
T PLN03232        699 ILFGSD--F----ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA  752 (1495)
T ss_pred             hhcCCc--c----CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence            777642  1    3455666666666643222           22346999999999974

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.59  E-value=1.2e-15  Score=155.03  Aligned_cols=101  Identities=19%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++             .|+||+|++.       +|
T Consensus       652 ~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eN  718 (1522)
T TIGR00957       652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLREN  718 (1522)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHH
Confidence            4556666654 59999999999999999999999999998 9999875             4899999975       56


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCC-----------chhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSN-----------LFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL-----------~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++..  .    +.++..++++.+.+           .........+||||||||++|+
T Consensus       719 I~~g~~--~----~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLA  772 (1522)
T TIGR00957       719 ILFGKA--L----NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA  772 (1522)
T ss_pred             hhcCCc--c----CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHH
Confidence            655532  1    11222222222222           1234566789999999999974

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=99.59  E-value=1.9e-15  Score=153.63  Aligned_cols=106  Identities=15%  Similarity=0.084  Sum_probs=74.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+.             +.|+|++|++.       +++
T Consensus       675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI  741 (1560)
T PTZ00243        675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNI  741 (1560)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHH
Confidence            455556654 59999999999999999999999999998 999752             36999999874       455


Q ss_pred             HhcCCCCC-ChHHH--HHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHA-AIRED--ISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~-~~~~d--~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++..... .+.+.  ...+.+.++.+  ++....+.+..+||||||||++|+
T Consensus       742 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLA  794 (1560)
T PTZ00243        742 LFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLA  794 (1560)
T ss_pred             HcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHH
Confidence            54321100 00000  01223344555  565566788999999999999974

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.58  E-value=4.1e-15  Score=131.90  Aligned_cols=106  Identities=15%  Similarity=0.075  Sum_probs=81.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHh-cCCCCCChHHHHHH
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET-GGCPHAAIREDISI  157 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~-g~~~~~~~~~d~~~  157 (189)
                      +||++-|+|.||||||||+++|+|+++|+ |+|.++|+++...+..+.|+-+..||.+.-.+-.+ +.....    ..+.
T Consensus       348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~a----s~q~  423 (546)
T COG4615         348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKA----SPQL  423 (546)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCC----ChHH
Confidence            69999999999999999999999999999 99999999998888888888899988876533222 222212    3456


Q ss_pred             HHHHHhhcCCchh---hcc--ccccCChHHHHhhhcC
Q 029723          158 NLGPLEELSNLFK---ADL--LLCESGGGNLQTISFI  189 (189)
Q Consensus       158 v~~~L~~lgL~~~---~~~--~~~eLSGGqrq~~~~i  189 (189)
                      +...|+++.|...   .+.  ..-.||.|||+|+|++
T Consensus       424 i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll  460 (546)
T COG4615         424 IEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALL  460 (546)
T ss_pred             HHHHHHHHHHhhhhcccCCcccccccccchHHHHHHH
Confidence            6777777776542   233  3447999999999863

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.57  E-value=5.7e-15  Score=136.27  Aligned_cols=112  Identities=15%  Similarity=0.104  Sum_probs=80.9

Q ss_pred             CCCCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHH-Hh
Q 029723           67 RRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-ET  143 (189)
Q Consensus        67 ~~~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i-~~  143 (189)
                      +......+++|.- +|+.++||||||+|||||||+|+|.+.|. |+|.+... +          ++||+.|+..... ..
T Consensus       333 ~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~igyf~Q~~~~l~~~~  401 (530)
T COG0488         333 GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------KIGYFDQHRDELDPDK  401 (530)
T ss_pred             CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------EEEEEEehhhhcCccC
Confidence            3345556677766 58999999999999999999999999998 98876543 3          5899999864221 00


Q ss_pred             cCCCCCC--h-HHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          144 GGCPHAA--I-REDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       144 g~~~~~~--~-~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .....+.  . ......+...|..|++.. ...+++..||||||.|+.|+
T Consensus       402 t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La  451 (530)
T COG0488         402 TVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLA  451 (530)
T ss_pred             cHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHH
Confidence            0000000  0 012567888999999974 56889999999999999874

>PLN03130 ABC transporter C family member; Provisional

Probab=99.56  E-value=3.6e-15  Score=152.12  Aligned_cols=101  Identities=20%  Similarity=0.161  Sum_probs=75.3

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC--ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~--G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      +...+++|.- +|++++|+||+||||||||++|+|.++|.  |+|.+             +..|+||+|+|.       +
T Consensus       631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~LfngTIre  697 (1622)
T PLN03130        631 PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWIFNATVRD  697 (1622)
T ss_pred             ceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCccccCCCCHHH
Confidence            3455666654 59999999999999999999999999985  67763             347999999985       7


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i  189 (189)
                      |+.++..  .    +.+++.++++.++|.+..           ...-..||||||||++|+
T Consensus       698 NI~fg~~--~----d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLA  752 (1622)
T PLN03130        698 NILFGSP--F----DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMA  752 (1622)
T ss_pred             HHhCCCc--c----cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHH
Confidence            7777642  1    455666677766664322           223446999999999974

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.53  E-value=1.3e-14  Score=144.39  Aligned_cols=124  Identities=19%  Similarity=0.115  Sum_probs=93.1

Q ss_pred             CCCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHH
Q 029723           64 YFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV  141 (189)
Q Consensus        64 ~~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i  141 (189)
                      |.+.-.+...+++|.-+ ||.+||||..|||||||+++|-++..|. |.|.|||.||.+....++|++++.+||+|..+-
T Consensus      1148 Yrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs 1227 (1381)
T KOG0054|consen 1148 YRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS 1227 (1381)
T ss_pred             eCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec
Confidence            44444566677887776 6999999999999999999999999988 999999999999999999999999999997321


Q ss_pred             HhcCCCCCCh--HHHHHHHHHHHhhcCCchhh-------cccc----ccCChHHHHhhhc
Q 029723          142 ETGGCPHAAI--REDISINLGPLEELSNLFKA-------DLLL----CESGGGNLQTISF  188 (189)
Q Consensus       142 ~~g~~~~~~~--~~d~~~v~~~L~~lgL~~~~-------~~~~----~eLSGGqrq~~~~  188 (189)
                      -+- +.+++.  +-..+++-++|+++.|.+..       +..+    .++|-||||.+.+
T Consensus      1228 GTv-R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCL 1286 (1381)
T KOG0054|consen 1228 GTV-RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCL 1286 (1381)
T ss_pred             Ccc-ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHH
Confidence            111 112211  11345677777777765433       2223    4699999999876

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.53  E-value=1.7e-14  Score=143.53  Aligned_cols=100  Identities=21%  Similarity=0.211  Sum_probs=81.0

Q ss_pred             CcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        71 ~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ...+++|.-+ |+.++|+|+.|||||+||.+|+|.++.. |+|.++|.             ++|++|.|-       +||
T Consensus       536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNI  602 (1381)
T KOG0054|consen  536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENI  602 (1381)
T ss_pred             cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhh
Confidence            5667777654 9999999999999999999999999987 99999875             799999985       777


Q ss_pred             HhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i  189 (189)
                      .+|...      |+++.+++++.+.|+...+.           +-.+||||||||++++
T Consensus       603 LFG~~~------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA  655 (1381)
T KOG0054|consen  603 LFGSPY------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA  655 (1381)
T ss_pred             hcCccc------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence            777432      67778888887777654443           3458999999999974

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.53  E-value=4.4e-15  Score=123.17  Aligned_cols=100  Identities=14%  Similarity=0.084  Sum_probs=58.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhc----------------ccCC-c--------cEEEeecCCC-CC--chHHHhhhcee
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKF----------------LRDK-Y--------SLAAVTNDIF-TK--EDGEFLMRNGA  132 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gl----------------l~p~-G--------~I~i~g~di~-~~--~~~~~~~~iG~  132 (189)
                      +++++|+|||||||||||++|+++                +.+. |        +|.+++.+.. ..  ....+++.+++
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~  102 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGL  102 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEEC
Confidence            789999999999999999999843                4444 4        4445443221 10  11234556788


Q ss_pred             ccchhHHHHHhcCCCCCChHHHHHHHHHHHhh--------------------cCCchhhccccccCChHHHHhhhcC
Q 029723          133 LPEERIRAVETGGCPHAAIREDISINLGPLEE--------------------LSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       133 v~Q~~~~~i~~g~~~~~~~~~d~~~v~~~L~~--------------------lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++|++..+    . ...    ....+..++..                    +++....+.++.+||+|||||++|+
T Consensus       103 ~~~~~~l~----~-~~~----t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la  170 (243)
T cd03272         103 KKDEYFLD----K-KNV----TKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALA  170 (243)
T ss_pred             CCCEEEEC----C-eEc----CHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHH
Confidence            77653210    0 000    01112222222                    2333345678999999999999874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.51  E-value=4.8e-15  Score=124.22  Aligned_cols=109  Identities=17%  Similarity=0.136  Sum_probs=74.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC--ccEEEeec-CCCCCc--hHHHhhhceeccchhHH----------------
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTN-DIFTKE--DGEFLMRNGALPEERIR----------------  139 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~--G~I~i~g~-di~~~~--~~~~~~~iG~v~Q~~~~----------------  139 (189)
                      ..+++|||||||||||||++|++++.+.  +++.+.+. ++....  .......++++||++..                
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~  104 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT  104 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence            5689999999999999999999999875  57777665 332111  11223478999998521                


Q ss_pred             -HHHhcCCC-C-CC-hHHHHHHHHHHHhhcCCc--------------------hhhccccccCChHHHHhhhcC
Q 029723          140 -AVETGGCP-H-AA-IREDISINLGPLEELSNL--------------------FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 -~i~~g~~~-~-~~-~~~d~~~v~~~L~~lgL~--------------------~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       ++..+... . .. .....+++.++|+.++|.                    ...+.++.+||+||||+++|+
T Consensus       105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la  178 (251)
T cd03273         105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS  178 (251)
T ss_pred             EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence             11122111 1 11 122346788899999986                    345678999999999999874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.49  E-value=5.9e-15  Score=121.00  Aligned_cols=112  Identities=14%  Similarity=-0.056  Sum_probs=67.9

Q ss_pred             ccCcccC--CCcEEEEEcCCCchHHHHHHHHHhcc-cCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCC
Q 029723           73 LSRNFNE--RAFTVGIGGPVGTGKTALMLALCKFL-RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH  148 (189)
Q Consensus        73 ~~~~f~~--~GeivgLiGpNGSGKTTLL~~L~Gll-~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~  148 (189)
                      +.++|..  +|++++|+|||||||||||++|++.+ .+. +..... .........+....|+++||.+...........
T Consensus        18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~g   96 (213)
T cd03279          18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRG   96 (213)
T ss_pred             eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEEEEEEEECCeEEEEEEecC
Confidence            4555653  37899999999999999999999654 232 333322 111111122334578999988642211111112


Q ss_pred             CChHHHHHHHHH--HHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          149 AAIREDISINLG--PLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       149 ~~~~~d~~~v~~--~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.    ...+.+  .+...++....++++.+||+||+|+++|+
T Consensus        97 l~----~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la  135 (213)
T cd03279          97 LD----YDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLS  135 (213)
T ss_pred             CC----HHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHH
Confidence            21    112211  24555566778999999999999999874

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.45  E-value=6.7e-14  Score=125.93  Aligned_cols=95  Identities=20%  Similarity=0.198  Sum_probs=67.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHHHhcCCCCCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVETGGCPHAA  150 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i~~g~~~~~~  150 (189)
                      ..||+++++||||-|||||+++|+|.++|+ |.    ..++          ++.|-||...       +.+........ 
T Consensus       365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gtV~~~l~~~~~~~-  429 (591)
T COG1245         365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGTVEDLLRSAIRSA-  429 (591)
T ss_pred             ecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCcHHHHHHHhhhhh-
Confidence            368999999999999999999999999998 86    2222          3445444321       22222111100 


Q ss_pred             hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          151 IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       151 ~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       ..+.....++++-|.|+...++++.+|||||.|||||+
T Consensus       430 -~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIa  467 (591)
T COG1245         430 -FGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIA  467 (591)
T ss_pred             -cccchhHHhhcCccchHHHHhcccccCCchhHHHHHHH
Confidence             00222345788899999999999999999999999974

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.45  E-value=7e-14  Score=115.84  Aligned_cols=31  Identities=23%  Similarity=0.226  Sum_probs=27.1

Q ss_pred             HHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          159 LGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       159 ~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++|+.++|.. ..++++.+||||||||++|+
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la  149 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLA  149 (226)
T ss_pred             HHHHHHCCCCcccccCccCcCCHHHHHHHHHH
Confidence            56899999986 47999999999999999874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.44  E-value=7.2e-14  Score=127.48  Aligned_cols=112  Identities=13%  Similarity=0.086  Sum_probs=78.5

Q ss_pred             CCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHH---
Q 029723           66 SRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA---  140 (189)
Q Consensus        66 ~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~---  140 (189)
                      ++.....++++|... ++.++|||||||||||||++++|.+.|+ |.|.-.....           +++.-|...+.   
T Consensus       400 ~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~-----------~~~y~Qh~~e~ldl  468 (614)
T KOG0927|consen  400 SDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK-----------LPRYNQHLAEQLDL  468 (614)
T ss_pred             CCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc-----------chhhhhhhHhhcCc
Confidence            444467778888765 7999999999999999999999999998 9886544433           22222222211   


Q ss_pred             ----HHhcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          141 ----VETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 ----i~~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++....... ....+.+..+|.++||. +..+.++.+||.|||+||.|+
T Consensus       469 ~~s~le~~~~~~~~-~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa  521 (614)
T KOG0927|consen  469 DKSSLEFMMPKFPD-EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFA  521 (614)
T ss_pred             chhHHHHHHHhccc-cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHH
Confidence                1111111110 12456788899999998 567889999999999999984

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.43  E-value=1.2e-13  Score=118.80  Aligned_cols=111  Identities=23%  Similarity=0.244  Sum_probs=87.2

Q ss_pred             CCCcccCcccCCC-cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCC
Q 029723           69 APPILSRNFNERA-FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (189)
Q Consensus        69 ~~~~~~~~f~~~G-eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~  147 (189)
                      .|..||..|.++| .+++|+|+|||||||||+.|++.+++...+.+...|+.+.++.++.+..|.    +..++..|..|
T Consensus        91 ~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~----pvvqi~tG~~C  166 (290)
T PRK10463         91 LAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGT----PAIQVNTGKGC  166 (290)
T ss_pred             HHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCC----cEEEecCCCCC
Confidence            6777999998875 999999999999999999999998877667777778877777676666664    45566778778


Q ss_pred             CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       148 ~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                      ++    +..++.++|+.|.+. ..+..+.|.+|...+++.|
T Consensus       167 hl----~a~mv~~Al~~L~~~-~~d~liIEnvGnLvcPa~f  202 (290)
T PRK10463        167 HL----DAQMIADAAPRLPLD-DNGILFIENVGNLVCPASF  202 (290)
T ss_pred             cC----cHHHHHHHHHHHhhc-CCcEEEEECCCCccCCCcc
Confidence            77    567778888888765 4578889999876676653

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.39  E-value=5.7e-13  Score=131.29  Aligned_cols=121  Identities=15%  Similarity=0.057  Sum_probs=93.0

Q ss_pred             CCCCCCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccC---CccEEEeecCCCCCchHHHhhhceeccchhH----
Q 029723           66 SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (189)
Q Consensus        66 ~~~~~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p---~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----  138 (189)
                      ..|.+..|-.-+..+|-.++|+|+|||||||||++|+|....   +|+|.|+|.+..   ...++|.+|||-|+..    
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~---q~tF~R~~GYvqQ~DiH~~~  878 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD---QETFARVSGYVEQQDIHSPE  878 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc---hhhhccccceeecccccCcc
Confidence            445566666667778999999999999999999999998653   399999998763   3578899999999865    


Q ss_pred             ----HHHHhcCC---C-CCChHHHHHHHHHHHhhcCCchhhcccccc----CChHHHHhhhcC
Q 029723          139 ----RAVETGGC---P-HAAIREDISINLGPLEELSNLFKADLLLCE----SGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~---~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~e----LSGGqrq~~~~i  189 (189)
                          +-+.+...   + .....+..+.++++++.|+|+...+..+..    ||..||+|+.|.
T Consensus       879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIg  941 (1391)
T KOG0065|consen  879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIG  941 (1391)
T ss_pred             cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEE
Confidence                22322211   1 122234447899999999999888888888    999999999873

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.37  E-value=9e-13  Score=122.53  Aligned_cols=106  Identities=21%  Similarity=0.121  Sum_probs=74.8

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      ...++.+|.- +|+.+.|.|+||||||||+|+|+|+.+-- |+|.+-. +          ..+-|+||.|.       +.
T Consensus       407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-~----------~~~lflpQ~PY~p~GtLre~  475 (604)
T COG4178         407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-D----------SALLFLPQRPYLPQGTLREA  475 (604)
T ss_pred             eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-C----------CceEEecCCCCCCCccHHHH
Confidence            3445555554 59999999999999999999999998865 8775431 0          14678888875       33


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccc------cccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLL------LCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~------~~eLSGGqrq~~~~i  189 (189)
                      +.+.....   .-..+.+.++|.+++|.+..++.      -..||+|||||++|+
T Consensus       476 l~YP~~~~---~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafA  527 (604)
T COG4178         476 LCYPNAAP---DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA  527 (604)
T ss_pred             HhCCCCCC---CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHH
Confidence            33322221   11456778899999998654443      346999999999985

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.29  E-value=4.2e-12  Score=114.44  Aligned_cols=111  Identities=19%  Similarity=0.123  Sum_probs=70.0

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------------
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------------  138 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------------  138 (189)
                      ++-...+|.++||+|+||-||||.|++|+|.+.|. |+..  + +.  ..+.-+.+--|--.|+..              
T Consensus        93 ~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~-pp--~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~  167 (591)
T COG1245          93 RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE--D-PP--SWDEVIKRFRGTELQNYFKKLYEGELRAVHKP  167 (591)
T ss_pred             cCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC--C-CC--CHHHHHHHhhhhHHHHHHHHHHcCCcceecch
Confidence            44455579999999999999999999999999998 8542  1 11  011111111222222222              


Q ss_pred             HHHHhc-CCCCCChH------HHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETG-GCPHAAIR------EDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g-~~~~~~~~------~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++..- ....-...      ....+.+++++.|+|....++.+.+|||||.||+||+
T Consensus       168 QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIa  225 (591)
T COG1245         168 QYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIA  225 (591)
T ss_pred             HHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHH
Confidence            111110 00000011      1123567889999999999999999999999999974

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.27  E-value=8.3e-12  Score=114.08  Aligned_cols=117  Identities=18%  Similarity=0.198  Sum_probs=91.0

Q ss_pred             cccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccchhH----------
Q 029723           72 ILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI----------  138 (189)
Q Consensus        72 ~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q~~~----------  138 (189)
                      ..+++|.-+ |||+||.|--|||+|-|+++|.|+.++. |+|.++|+++...++. .++..|+||+.++.          
T Consensus       275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI  354 (500)
T COG1129         275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI  354 (500)
T ss_pred             eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcH
Confidence            346667665 9999999999999999999999988887 9999999988766655 45668999998874          


Q ss_pred             -HHHHhcCCC------CCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhc
Q 029723          139 -RAVETGGCP------HAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISF  188 (189)
Q Consensus       139 -~~i~~g~~~------~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~  188 (189)
                       +|+.+....      .+..+.....+.++.+.|.+.. ..+..+.+||||+||+|.|
T Consensus       355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvl  412 (500)
T COG1129         355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVL  412 (500)
T ss_pred             HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHH
Confidence             344333111      1223445567888899999864 5678999999999999976

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.25  E-value=1.8e-13  Score=112.60  Aligned_cols=94  Identities=12%  Similarity=-0.027  Sum_probs=55.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHH--------H-hcCC------
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV--------E-TGGC------  146 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i--------~-~g~~------  146 (189)
                      ++++|+|||||||||||++|+-.         .|.++.    ..+.+++++++|+.....        . +...      
T Consensus        26 ~i~~ivGpNGaGKSTll~~i~~~---------~G~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   92 (212)
T cd03274          26 SFSAIVGPNGSGKSNVIDSMLFV---------FGFRAS----KMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLL   92 (212)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH---------hccCHH----HhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHH
Confidence            79999999999999999999832         122210    011234666655532000        0 0000      


Q ss_pred             --CCCChHHHHH---HHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          147 --PHAAIREDIS---INLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       147 --~~~~~~~d~~---~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        ..... ....   +..++++.++|.+..++++..||+|||||++|+
T Consensus        93 ~~~g~~~-~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la  139 (212)
T cd03274          93 KSKGIDL-DHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLA  139 (212)
T ss_pred             HHCCcCC-CCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHH
Confidence              00000 0000   124566777887778889999999999999874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.24  E-value=1e-11  Score=105.62  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=29.2

Q ss_pred             HHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          156 SINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       156 ~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++.++|+.++|.. .+++++.+|||||+||++|+
T Consensus       147 ~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LA  181 (261)
T cd03271         147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLA  181 (261)
T ss_pred             HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHH
Confidence            45677899999987 57999999999999999874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=7.9e-12  Score=112.65  Aligned_cols=114  Identities=17%  Similarity=0.200  Sum_probs=81.8

Q ss_pred             CCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHH
Q 029723           65 FSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE  142 (189)
Q Consensus        65 ~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~  142 (189)
                      |++..+.+.+++|-.. -..|+||||||.||||||++|+|-+.|+ |+..-+           .+-+||+.-|..++.+.
T Consensus       596 y~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG~FdQh~~E~L~  664 (807)
T KOG0066|consen  596 YPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIGWFDQHANEALN  664 (807)
T ss_pred             CCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeeechhhhhHHhhc
Confidence            4566778888888776 5789999999999999999999999998 866432           12368888887664432


Q ss_pred             hcCCC--CC--ChHHHHHHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723          143 TGGCP--HA--AIREDISINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       143 ~g~~~--~~--~~~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i  189 (189)
                      .-..+  ++  .+....+.++..|-.+||... -...+..|||||+.||+|+
T Consensus       665 ~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVala  716 (807)
T KOG0066|consen  665 GEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALA  716 (807)
T ss_pred             cccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHH
Confidence            21110  00  001134567788999999754 3567999999999999974

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.24  E-value=2.4e-12  Score=105.23  Aligned_cols=100  Identities=17%  Similarity=0.005  Sum_probs=58.1

Q ss_pred             cccCcccCCCcEEEEEcCCCchHHHHHHHHH----hcccCC-ccEEEeecCCCCCchHHHhhhceeccchh-HHHHHh--
Q 029723           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALC----KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVET--  143 (189)
Q Consensus        72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~----Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~-~~~i~~--  143 (189)
                      ...+.|.. | +++|+|||||||||||++|+    |...|+ +.+..+...+..   .+....++++||++ ...+..  
T Consensus        15 ~~~l~~~~-g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r   89 (204)
T cd03240          15 RSEIEFFS-P-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITR   89 (204)
T ss_pred             ceEEecCC-C-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEE
Confidence            33455653 3 99999999999999999995    777776 655422211111   12345789999987 211100  


Q ss_pred             --cCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhh
Q 029723          144 --GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTI  186 (189)
Q Consensus       144 --g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~  186 (189)
                        .....+... ....+.         ...++.+.+||+||+|++
T Consensus        90 ~~~~~~~~~~~-~~~~~~---------~~~~~~~~~LS~G~~~~~  124 (204)
T cd03240          90 SLAILENVIFC-HQGESN---------WPLLDMRGRCSGGEKVLA  124 (204)
T ss_pred             EhhHhhceeee-chHHHH---------HHHhcCccccCccHHHHH
Confidence              000000000 011122         223788999999999974

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.18  E-value=5.8e-11  Score=107.59  Aligned_cols=119  Identities=20%  Similarity=0.205  Sum_probs=93.2

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC-CCCchHHHh-hhceeccchhH-------
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFL-MRNGALPEERI-------  138 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di-~~~~~~~~~-~~iG~v~Q~~~-------  138 (189)
                      ....+++|+-+ |||+||.|-.|-|-+.|+.+|+|+.++. |+|.++|.++ ...+..+++ ..++|||+++.       
T Consensus       272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~  351 (501)
T COG3845         272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD  351 (501)
T ss_pred             ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccC
Confidence            44566788776 8999999999999999999999999876 9999999997 455666554 48999999984       


Q ss_pred             ----HHHHhcCCC--------CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhc
Q 029723          139 ----RAVETGGCP--------HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       139 ----~~i~~g~~~--------~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~  188 (189)
                          +|+.++...        .+.+.+....+.++++++++. .....++..||||++|++-+
T Consensus       352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Il  414 (501)
T COG3845         352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLIL  414 (501)
T ss_pred             ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhh
Confidence                343333221        233455667788999999997 35677899999999999865

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.18  E-value=2.2e-11  Score=112.12  Aligned_cols=109  Identities=18%  Similarity=0.066  Sum_probs=69.0

Q ss_pred             ccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHHHh
Q 029723           73 LSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVET  143 (189)
Q Consensus        73 ~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i~~  143 (189)
                      .+++|.- +|.-+.|.||||||||+|||+|.|+.+-. |.+..-...-    +    +.+-||||.|.       +++-+
T Consensus       452 e~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----~----~~lfflPQrPYmt~GTLRdQvIY  523 (659)
T KOG0060|consen  452 ENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----P----KDLFFLPQRPYMTLGTLRDQVIY  523 (659)
T ss_pred             eeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC----C----CceEEecCCCCccccchhheeec
Confidence            3445544 58999999999999999999999998866 8776433211    1    34789999986       22211


Q ss_pred             cCC--CCCChHHHHHHHHHHHhhcCCchhhc-----------cccccCChHHHHhhhcC
Q 029723          144 GGC--PHAAIREDISINLGPLEELSNLFKAD-----------LLLCESGGGNLQTISFI  189 (189)
Q Consensus       144 g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~-----------~~~~eLSGGqrq~~~~i  189 (189)
                      ...  .......+.+++.+.|+.+.|.....           .-...||+|||||++|+
T Consensus       524 P~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~A  582 (659)
T KOG0060|consen  524 PLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFA  582 (659)
T ss_pred             cCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHH
Confidence            110  00001113345566666665543222           22457999999999985

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.18  E-value=1.1e-11  Score=103.72  Aligned_cols=34  Identities=35%  Similarity=0.383  Sum_probs=29.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV  114 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~  114 (189)
                      ..+++|+|||||||||||.+|++++.+. +++...
T Consensus        22 ~~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~   56 (247)
T cd03275          22 DRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSK   56 (247)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCccccccc
Confidence            3589999999999999999999999876 766544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.15  E-value=2.8e-11  Score=90.03  Aligned_cols=60  Identities=27%  Similarity=0.181  Sum_probs=48.4

Q ss_pred             cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccch
Q 029723           72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (189)
Q Consensus        72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~  136 (189)
                      ...++|.- +|++++|+|||||||||||++++     .|++.+++.|+......++.+.+++++|+
T Consensus         5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~   65 (107)
T cd00820           5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL   65 (107)
T ss_pred             EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh
Confidence            34455544 47999999999999999999986     78899999999776666666777788776

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.15  E-value=3e-11  Score=98.45  Aligned_cols=97  Identities=18%  Similarity=0.015  Sum_probs=57.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeec---CCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHH
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTN---DIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN  158 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~---di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v  158 (189)
                      .+.+|+|||||||||||.+|+-.+..+-.....+.   ++....  .....|.++||+.....      .........++
T Consensus        22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~------~~~~~~~~~~~   93 (198)
T cd03276          22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA------NPLCVLSQDMA   93 (198)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCC--CCeEEEEEEEEcCCccC------CcCCHHHHHHH
Confidence            48899999999999999999865443311111121   110000  01234666666533111      11111123567


Q ss_pred             HHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          159 LGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       159 ~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++|+.   ....++++.+||+||||+++|+
T Consensus        94 ~~~l~~---~~~~~~~~~~lS~G~k~r~~ia  121 (198)
T cd03276          94 RSFLTS---NKAAVRDVKTLSGGERSFSTVC  121 (198)
T ss_pred             HHHhcc---ccccCCcccccChhHHHHHHHH
Confidence            777776   4567889999999999999873

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR00101 ureG urease accessory protein UreG

Probab=99.08  E-value=2.5e-10  Score=93.19  Aligned_cols=98  Identities=57%  Similarity=0.971  Sum_probs=67.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHHHHHH
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL  162 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v~~~L  162 (189)
                      .++|+|++|||||||++.|++.+++...+.+...++....+.++.+..++++|+....+..+.+++...+.+..+....|
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~L   82 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEAV   82 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHHH
Confidence            68999999999999999999998877557788888877666777778898888765555555565544333333333333


Q ss_pred             hhcC-CchhhccccccCCh
Q 029723          163 EELS-NLFKADLLLCESGG  180 (189)
Q Consensus       163 ~~lg-L~~~~~~~~~eLSG  180 (189)
                      ..+- .....|..+.|.||
T Consensus        83 ~~l~~~~~~~D~iiIEt~G  101 (199)
T TIGR00101        83 AEMEARFPPLEMVFIESGG  101 (199)
T ss_pred             HHHHhcCCCCCEEEEECCC
Confidence            3331 11135666777777

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.07  E-value=1.1e-10  Score=106.98  Aligned_cols=106  Identities=16%  Similarity=0.077  Sum_probs=62.7

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCC
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH  148 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~  148 (189)
                      ..++..|.- +|--+.|+||||||||+|+|+|.|+.+-. |... .-.          ..+|-|+||.|.--  .|..+.
T Consensus       497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~-~P~----------~~~mFYIPQRPYms--~gtlRD  563 (728)
T KOG0064|consen  497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLS-IPR----------PNNIFYIPQRPYMS--GGTLRD  563 (728)
T ss_pred             eecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeee-cCC----------CcceEeccCCCccC--cCcccc
Confidence            344555554 48888999999999999999999998754 4332 211          12488999988511  111110


Q ss_pred             C----ChHHH-------HHHHHHHHhhcCCchhhcc---------ccccCChHHHHhhhcC
Q 029723          149 A----AIRED-------ISINLGPLEELSNLFKADL---------LLCESGGGNLQTISFI  189 (189)
Q Consensus       149 ~----~~~~d-------~~~v~~~L~~lgL~~~~~~---------~~~eLSGGqrq~~~~i  189 (189)
                      .    ...++       .+....+|..+.|+..+.+         --..||||||||++++
T Consensus       564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mA  624 (728)
T KOG0064|consen  564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMA  624 (728)
T ss_pred             eeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHH
Confidence            0    00000       1223444554444432222         2247999999999874

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.05  E-value=9.9e-11  Score=97.22  Aligned_cols=124  Identities=12%  Similarity=0.053  Sum_probs=89.1

Q ss_pred             CCCCCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-----ccEEEeecCCCCCchHHHhh----hceeccc
Q 029723           66 SRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-----YSLAAVTNDIFTKEDGEFLM----RNGALPE  135 (189)
Q Consensus        66 ~~~~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-----G~I~i~g~di~~~~~~~~~~----~iG~v~Q  135 (189)
                      ++++.+..++++.- +||+-||||.+|||||-..++|||..+..     -+..+++.++..+.+.++++    .|.++||
T Consensus        17 qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQ   96 (330)
T COG4170          17 QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ   96 (330)
T ss_pred             CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhc
Confidence            45555666666554 59999999999999999999999998753     45667788887888877765    5779999


Q ss_pred             hhH-----------HHHH-hcCCCCC-Ch----HHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723          136 ERI-----------RAVE-TGGCPHA-AI----REDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       136 ~~~-----------~~i~-~g~~~~~-~~----~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +|.           +.+. ....-+. .+    .-.+.++.++|.++|+.+   ....++.||.-||-|+|.|+
T Consensus        97 eP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA  170 (330)
T COG4170          97 EPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIA  170 (330)
T ss_pred             CchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeee
Confidence            986           1111 1000000 00    113567889999999975   45678999999999998764

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.02  E-value=3.6e-10  Score=103.53  Aligned_cols=124  Identities=15%  Similarity=0.039  Sum_probs=71.2

Q ss_pred             CCCCCCCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC---ccEEEeecCCCCCchHHHhhhce-eccchhH--
Q 029723           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK---YSLAAVTNDIFTKEDGEFLMRNG-ALPEERI--  138 (189)
Q Consensus        65 ~~~~~~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~---G~I~i~g~di~~~~~~~~~~~iG-~v~Q~~~--  138 (189)
                      |.+..+..+...--.+|+.+||+|+|||||||+|++|.+-..|.   -.++.....+.... ....+.+- ..+++..  
T Consensus        85 ~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~-~~av~~v~~~~~~e~~rl  163 (614)
T KOG0927|consen   85 FHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE-KQAVQAVVMETDHERKRL  163 (614)
T ss_pred             cCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch-HHHHHHHhhhhHHHHHHH
Confidence            33334444444444569999999999999999999999987764   34444444443211 11111111 1122211  


Q ss_pred             ----HHHHhcCCC--------------CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGCP--------------HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~~--------------~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +.+......              .+.......++..+|..++.. ...++.+..||||+|.|++++
T Consensus       164 e~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA  233 (614)
T KOG0927|consen  164 EYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA  233 (614)
T ss_pred             HHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH
Confidence                111010000              001112234566777777764 578999999999999999874

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.99  E-value=2.3e-10  Score=93.20  Aligned_cols=100  Identities=45%  Similarity=0.638  Sum_probs=81.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHHHHH
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP  161 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v~~~  161 (189)
                      ..++|.||+||||||||..++..++.+.++.+...|+.+.+++++.++.   +..+...+++|..|++    +..++.++
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~----da~m~~~a   86 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHL----DASMNLEA   86 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCccCC----cHHHHHHH
Confidence            4799999999999999999999998778999999999887787776662   3447778889966785    78888888


Q ss_pred             HhhcCCchh-hccccccCChHHHHhhhc
Q 029723          162 LEELSNLFK-ADLLLCESGGGNLQTISF  188 (189)
Q Consensus       162 L~~lgL~~~-~~~~~~eLSGGqrq~~~~  188 (189)
                      ++.|..+.. .+..+.|..|+.-++.++
T Consensus        87 i~~l~~~~~~~Dll~iEs~GNL~~~~sp  114 (202)
T COG0378          87 IEELVLDFPDLDLLFIESVGNLVCPFSP  114 (202)
T ss_pred             HHHHhhcCCcCCEEEEecCcceecccCc
Confidence            888876533 688888888877776654

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=6.1e-10  Score=101.58  Aligned_cols=111  Identities=16%  Similarity=0.104  Sum_probs=61.6

Q ss_pred             CCCCCCCCc-ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecC--CCCCchHHHh-------hhceec
Q 029723           64 YFSRRAPPI-LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND--IFTKEDGEFL-------MRNGAL  133 (189)
Q Consensus        64 ~~~~~~~~~-~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~d--i~~~~~~~~~-------~~iG~v  133 (189)
                      +|.++.+.. -++.+. .|..+||+|+||+|||||||+|+.     |.|......  +.+.......       ...-++
T Consensus        89 a~G~k~LL~~a~L~L~-~GrRYGLvGrNG~GKsTLLRaia~-----~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl  162 (582)
T KOG0062|consen   89 AYGGKILLNKANLTLS-RGRRYGLVGRNGIGKSTLLRAIAN-----GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFL  162 (582)
T ss_pred             eecchhhhcCCceeee-cccccceeCCCCCcHHHHHHHHHh-----cCcCccCchhheeccchHHHhhhhhccHHHHHHH
Confidence            444444333 334444 689999999999999999999998     222211111  1000000000       011122


Q ss_pred             cchhHHHHHhcCCCCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          134 PEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       134 ~Q~~~~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++...+  .+    +   +-.+.+.++|..||..+ ...+++.+||||-|.|++++
T Consensus       163 ~~e~~l~--~~----~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLA  210 (582)
T KOG0062|consen  163 AEEKELL--AG----L---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALA  210 (582)
T ss_pred             Hhhhhhh--cc----c---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHH
Confidence            2221111  00    0   11222334899999975 67889999999999999874

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.93  E-value=1.2e-09  Score=108.17  Aligned_cols=113  Identities=18%  Similarity=0.108  Sum_probs=81.7

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccC----CccEEEeecCCCCCchHHHhhhceeccchhH--------HHH
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV  141 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p----~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i  141 (189)
                      -.-..++|+.+.++||+||||||||++|+|-+..    .|+|.++|.+......   ++.++|+.|...        +.+
T Consensus       134 ~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lTVreTl  210 (1391)
T KOG0065|consen  134 ISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELTVRETL  210 (1391)
T ss_pred             cceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeEEeehh
Confidence            3444556999999999999999999999997653    3789999998854332   567899998765        444


Q ss_pred             HhcCCCCCC---h----H--HHHHHHHHHHhhcCCchhhc-----cccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAA---I----R--EDISINLGPLEELSNLFKAD-----LLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~---~----~--~d~~~v~~~L~~lgL~~~~~-----~~~~eLSGGqrq~~~~i  189 (189)
                      .+...|...   +    +  ....+.+.+|+.+||+.-.+     ..+.-.|||||+||+++
T Consensus       211 dFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~  272 (1391)
T KOG0065|consen  211 DFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIG  272 (1391)
T ss_pred             hHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeee
Confidence            554444322   1    1  12235778999999986554     44567999999999864

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.92  E-value=1.2e-09  Score=90.43  Aligned_cols=113  Identities=15%  Similarity=0.052  Sum_probs=70.3

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      -|..-+.++.-+ |....|||.|||||||||++|+|---.. |.|.+.|.+.+....-+-.....|+--+=.        
T Consensus        27 dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~age  106 (291)
T KOG2355|consen   27 DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGE  106 (291)
T ss_pred             CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEeccccccccccccc
Confidence            345544444443 7888899999999999999999964334 889999988764221111122333322110        


Q ss_pred             ---------HHHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          139 ---------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       139 ---------~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                               +.+.++..-     .+.++-+++++.|++.  ..-++..+|-|||+||.|
T Consensus       107 vplq~D~sae~mifgV~g-----~dp~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQi  158 (291)
T KOG2355|consen  107 VPLQGDISAEHMIFGVGG-----DDPERREKLIDILDID--LRWRMHKVSDGQRRRVQI  158 (291)
T ss_pred             ccccccccHHHHHhhccC-----CChhHhhhhhhheecc--ceEEEeeccccchhhhHH
Confidence                     111111110     1234556677777775  566788999999999976

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.87  E-value=1.8e-09  Score=98.47  Aligned_cols=63  Identities=10%  Similarity=0.024  Sum_probs=48.0

Q ss_pred             ccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-c-cEEEeecCCCCCchHHHhhhceeccchhH
Q 029723           73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (189)
Q Consensus        73 ~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G-~I~i~g~di~~~~~~~~~~~iG~v~Q~~~  138 (189)
                      .++++. .+|++++|+|||||||||||+  ++++.|+ | +|.++|.++...+..++.. +-+|||+..
T Consensus        23 ~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~fn   88 (504)
T TIGR03238        23 VKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGFN   88 (504)
T ss_pred             hCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhhh
Confidence            445555 359999999999999999999  6777776 6 7999999997655544322 228899865

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.86  E-value=2.2e-09  Score=91.71  Aligned_cols=56  Identities=20%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc-hHHHhhhceeccchh
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEER  137 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~-~~~~~~~iG~v~Q~~  137 (189)
                      .-++|+|||||||||||++|+++++|. |+|.++|.++...+ ..++.+.+++++|..
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~  169 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD  169 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc
Confidence            568999999999999999999999998 99999999986543 346666778888865

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.85  E-value=1.9e-09  Score=96.91  Aligned_cols=100  Identities=16%  Similarity=0.126  Sum_probs=63.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC--ccEEEeecCCCCCchHHH-hhhceeccchhHHHHHhcCCCCCChHHHHH
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEF-LMRNGALPEERIRAVETGGCPHAAIREDIS  156 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~--G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~  156 (189)
                      ..+++..+|.||.|||||+++++|.++|+  ++|-........   ..+ .+.-+.|-|-...-+   ...++    +..
T Consensus       366 dSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykp---qkispK~~~tvR~ll~~kI---r~ay~----~pq  435 (592)
T KOG0063|consen  366 DSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKP---QKISPKREGTVRQLLHTKI---RDAYM----HPQ  435 (592)
T ss_pred             CceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccc---cccCccccchHHHHHHHHh---Hhhhc----CHH
Confidence            45899999999999999999999999997  444433322210   000 011111111100000   00111    334


Q ss_pred             HHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          157 INLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       157 ~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      -+.+.++-|.++...++-+..|||||+||++++
T Consensus       436 F~~dvmkpL~ie~i~dqevq~lSggelQRval~  468 (592)
T KOG0063|consen  436 FVNDVMKPLQIENIIDQEVQGLSGGELQRVALA  468 (592)
T ss_pred             HHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHH
Confidence            566778888888889999999999999999975

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.85  E-value=1.5e-09  Score=88.18  Aligned_cols=32  Identities=28%  Similarity=0.296  Sum_probs=25.7

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHH
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~  102 (189)
                      ..+++.+....++++|+|||||||||||++|+
T Consensus        18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             EcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence            34566665433589999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.83  E-value=3.6e-09  Score=95.03  Aligned_cols=106  Identities=16%  Similarity=0.124  Sum_probs=66.7

Q ss_pred             cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcc--------cCC-ccEEEeecCCCCCchHHHhhhce-eccchhHHHHH
Q 029723           74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--------RDK-YSLAAVTNDIFTKEDGEFLMRNG-ALPEERIRAVE  142 (189)
Q Consensus        74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll--------~p~-G~I~i~g~di~~~~~~~~~~~iG-~v~Q~~~~~i~  142 (189)
                      ++++. ++|++++|+|++||||||||++|+|..        +|+ |.|.+-.+.+..+-+.+.--.++ ..++   +.+ 
T Consensus       401 ~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~til---ehl-  476 (593)
T COG2401         401 NLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTIL---EHL-  476 (593)
T ss_pred             ceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHH---HHH-
Confidence            44444 469999999999999999999999974        466 77765544332111111000011 0000   111 


Q ss_pred             hcCCCCCChHHHHHHHHHHHhhcCCch--hhccccccCChHHHHhhhcC
Q 029723          143 TGGCPHAAIREDISINLGPLEELSNLF--KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       143 ~g~~~~~~~~~d~~~v~~~L~~lgL~~--~~~~~~~eLSGGqrq~~~~i  189 (189)
                       .     +...|...+.++|.++||.+  +..+.+.+||-||+-|+.|+
T Consensus       477 -~-----s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLA  519 (593)
T COG2401         477 -R-----SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLA  519 (593)
T ss_pred             -h-----hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHH
Confidence             0     11125566788999999975  56778999999999998653

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.82  E-value=7e-09  Score=83.22  Aligned_cols=58  Identities=19%  Similarity=0.139  Sum_probs=42.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHH
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRA  140 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~  140 (189)
                      |++++|+||||||||||+++|++++.+  .+.+.+..+...........+++++|+....
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYITRPASAGSENHIALSEQEFFTR   59 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEECCCccchhHHhheeEcHHHHHHH
Confidence            689999999999999999999998765  4666665554333333445788888886533

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=4.8e-09  Score=95.82  Aligned_cols=93  Identities=15%  Similarity=0.100  Sum_probs=69.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHh---------cCCCCCCh
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET---------GGCPHAAI  151 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~---------g~~~~~~~  151 (189)
                      ..++++|+||+||||+++++.+-+.|. |.+.+..           +++|+|.+|.-...+..         ...+..  
T Consensus       391 sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~--  457 (582)
T KOG0062|consen  391 SRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK--  457 (582)
T ss_pred             hhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cceecchhHhhhhHHHHHhHHHHHHHHhCCCC--
Confidence            678999999999999999999999887 7665443           34788888865422111         111221  


Q ss_pred             HHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          152 REDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       152 ~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                        ..+.++..|..|||.. .....+..||||||-||+|+
T Consensus       458 --~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA  494 (582)
T KOG0062|consen  458 --TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFA  494 (582)
T ss_pred             --CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHH
Confidence              3567888999999975 55666889999999999985

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.78  E-value=6.7e-09  Score=83.75  Aligned_cols=89  Identities=18%  Similarity=0.266  Sum_probs=51.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCc--hHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHHHH
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE--DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v~~  160 (189)
                      +++|+|+||||||||+++|++++ +.+.+.+...|..-..  ..+......+.++.+         ...    +.....+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l-~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~~~   66 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL-GNPKVVIISQDSYYKDLSHEELEERKNNNYDHP---------DAF----DFDLLIS   66 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh-CCCCeEEEEecccccccccccHHHhccCCCCCC---------Ccc----cHHHHHH
Confidence            58999999999999999999998 3467777776643211  111111111111111         001    2234445


Q ss_pred             HHhhcCCchhhccccccCChHHHHh
Q 029723          161 PLEELSNLFKADLLLCESGGGNLQT  185 (189)
Q Consensus       161 ~L~~lgL~~~~~~~~~eLSGGqrq~  185 (189)
                      .|..+........+..++|.+++++
T Consensus        67 ~l~~l~~~~~~~~p~~d~~~~~~~~   91 (198)
T cd02023          67 HLQDLKNGKSVEIPVYDFKTHSRLK   91 (198)
T ss_pred             HHHHHHCCCCEeccccccccCcccC
Confidence            6665555445566666777776654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR00235 udk uridine kinase

Probab=98.74  E-value=2.1e-08  Score=81.69  Aligned_cols=59  Identities=22%  Similarity=0.392  Sum_probs=40.1

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCc--hHHHhhhceeccchh
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE--DGEFLMRNGALPEER  137 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~  137 (189)
                      .++|++++|+|+||||||||+++|++++++ +.+.+...|..-..  ........++.+|.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~-~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~   63 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK-LEIVIISQDNYYKDQSHLEMAERKKTNFDHP   63 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcc-cCCeEecccccccChhhCCHHHhcCCCCCCc
Confidence            356899999999999999999999999876 34444444432211  112234566666654

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.73  E-value=1.7e-08  Score=103.73  Aligned_cols=33  Identities=18%  Similarity=0.167  Sum_probs=27.6

Q ss_pred             HHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723          156 SINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       156 ~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++ ++|+.++|... +++.+.+|||||+||++|+
T Consensus       788 ~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LA  821 (1809)
T PRK00635        788 EKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLA  821 (1809)
T ss_pred             HHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHH
Confidence            344 57888999875 7999999999999999874

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.70  E-value=1.5e-08  Score=81.48  Aligned_cols=36  Identities=28%  Similarity=0.364  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g  115 (189)
                      +|++++|+|||||||||||++|+++++|+ +.|.+.+
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied   60 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED   60 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence            58999999999999999999999999988 7777654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.64  E-value=4.3e-08  Score=78.56  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF  119 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~  119 (189)
                      +|++++|+|+||||||||+++|++++.+   +.+++.++.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~   38 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLH   38 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccC
Confidence            5899999999999999999999999876   567776663

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.63  E-value=5.6e-08  Score=95.33  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=26.5

Q ss_pred             HHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          158 NLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       158 v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ..++|+.++|.. .+++.+.+|||||+||++|+
T Consensus       810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LA  842 (943)
T PRK00349        810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLA  842 (943)
T ss_pred             HHHHHHHCCCCcccccCCcccCCHHHHHHHHHH
Confidence            356788889975 47889999999999999874

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.62  E-value=3.6e-08  Score=89.59  Aligned_cols=61  Identities=15%  Similarity=0.085  Sum_probs=46.8

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee---cCCCCCchHH----Hhhhceeccchh
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT---NDIFTKEDGE----FLMRNGALPEER  137 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g---~di~~~~~~~----~~~~iG~v~Q~~  137 (189)
                      -..+|++++|+|+|||||||||++|+++.+|+ |.|.+.|   .++.......    +++.|+|++|..
T Consensus       161 ~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd  229 (450)
T PRK06002        161 PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSD  229 (450)
T ss_pred             eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCC
Confidence            45579999999999999999999999999998 8888764   5543222222    235799999864

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.62  E-value=6.2e-08  Score=87.97  Aligned_cols=107  Identities=13%  Similarity=0.138  Sum_probs=67.9

Q ss_pred             ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEee---cCCCCCchHHHh---hhceec-----cchhH-
Q 029723           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVT---NDIFTKEDGEFL---MRNGAL-----PEERI-  138 (189)
Q Consensus        73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g---~di~~~~~~~~~---~~iG~v-----~Q~~~-  138 (189)
                      +.+.-..+|++++|+|+||+|||||+++|+++.++ + +.|.+.|   .++......++.   .+..++     +|.|. 
T Consensus       156 D~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~  235 (442)
T PRK06315        156 DGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQL  235 (442)
T ss_pred             eccccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHH
Confidence            33433446999999999999999999999998854 4 5566644   444222222221   235555     88875 


Q ss_pred             ------------HHHHhcCCCCCChHHHHHHHHHHHhhcCCc-----hhhccccccCC
Q 029723          139 ------------RAVETGGCPHAAIREDISINLGPLEELSNL-----FKADLLLCESG  179 (189)
Q Consensus       139 ------------~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~-----~~~~~~~~eLS  179 (189)
                                  +.+..-....+...++..++.+++++++|.     .....++.+||
T Consensus       236 rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS  293 (442)
T PRK06315        236 RLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS  293 (442)
T ss_pred             HhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence                        111111111112345678899999999993     35677888877

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.61  E-value=4.5e-08  Score=86.77  Aligned_cols=57  Identities=19%  Similarity=0.177  Sum_probs=39.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccC---Cc-cEEEeecCCCCCchHHHhhhceeccch
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD---KY-SLAAVTNDIFTKEDGEFLMRNGALPEE  136 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p---~G-~I~i~g~di~~~~~~~~~~~iG~v~Q~  136 (189)
                      .++.++.|+||+||||||||++|++.+.+   .+ .|...+.++. .....+....+++.|.
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-~~~~~~~~~~~~v~Q~  192 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-FVYDEIETISASVCQS  192 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-Eeccccccccceeeee
Confidence            46889999999999999999999998842   33 5555555442 3333333334566664

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.60  E-value=4e-08  Score=66.24  Aligned_cols=36  Identities=31%  Similarity=0.439  Sum_probs=30.6

Q ss_pred             ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      ..+.|.+.|.++.|+|+|||||||||.+|.-++-+.
T Consensus        15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~   50 (62)
T PF13555_consen   15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN   50 (62)
T ss_pred             eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            355677678899999999999999999999887664

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=6.2e-08  Score=87.86  Aligned_cols=121  Identities=16%  Similarity=0.115  Sum_probs=74.0

Q ss_pred             CCCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhc---ccCCccEEEeecCCCCCchHHH-------hhhceeccchhH
Q 029723           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF---LRDKYSLAAVTNDIFTKEDGEF-------LMRNGALPEERI  138 (189)
Q Consensus        69 ~~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl---l~p~G~I~i~g~di~~~~~~~~-------~~~iG~v~Q~~~  138 (189)
                      .+..|.......|..+|||||||-||||||+-|+..   ++|.-.+.+.++.+...+...+       .+++.++-.+..
T Consensus       278 ~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~  357 (807)
T KOG0066|consen  278 LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAK  357 (807)
T ss_pred             eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHH
Confidence            444455555556889999999999999999999863   4555778888877743221111       112222211111


Q ss_pred             --HHHHhcCCC---CC----------ChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCP---HA----------AIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~---~~----------~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                        ..+.-|...   .+          .-.....+++.+|.-||+.. ..+++...+|||-|.||+++
T Consensus       358 L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLA  424 (807)
T KOG0066|consen  358 LMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLA  424 (807)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHH
Confidence              111111000   00          00112356788999999975 56788889999999999874

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.57  E-value=2.5e-08  Score=82.20  Aligned_cols=26  Identities=35%  Similarity=0.485  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      -.+..|+|+|||||||||.+|+-.+-
T Consensus        23 ~g~n~i~G~NgsGKS~lleAi~~~l~   48 (213)
T cd03277          23 PSLNMIIGPNGSGKSSIVCAICLGLG   48 (213)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            35778999999999999999987663

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.56  E-value=8.2e-08  Score=77.80  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=44.3

Q ss_pred             cccCCCcEEEEEcCCCchHHHHHHHHHhcccCC--ccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723           76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (189)
Q Consensus        76 ~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~--G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~  138 (189)
                      .|..++.+++|+|+||||||||.+.|.+.+.+.  |.+.+++.++.    ..+...++|.+|+..
T Consensus        19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~----~~~~~~~~~~~~~~~   79 (198)
T PRK03846         19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR----HGLCSDLGFSDADRK   79 (198)
T ss_pred             hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH----hhhhhcCCcCcccHH
Confidence            455678999999999999999999999988765  56777775542    122235778777764

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.56  E-value=9.7e-08  Score=79.10  Aligned_cols=40  Identities=38%  Similarity=0.440  Sum_probs=33.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE-eecCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA-VTNDI  118 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i-~g~di  118 (189)
                      .+..+++|+|+||||||||+++|++++++. |.+.+ ...|-
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~   72 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDG   72 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccc
Confidence            346899999999999999999999999987 87555 44443

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.54  E-value=7.1e-08  Score=94.47  Aligned_cols=32  Identities=22%  Similarity=0.240  Sum_probs=26.5

Q ss_pred             HHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          158 NLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       158 v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ..++|+.++|.. .+++.+.+|||||+||++|+
T Consensus       808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA  840 (924)
T TIGR00630       808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLA  840 (924)
T ss_pred             HHHHHHHcCCCchhhcCccccCCHHHHHHHHHH
Confidence            446788889975 47899999999999999874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.54  E-value=2.6e-08  Score=81.75  Aligned_cols=37  Identities=14%  Similarity=0.028  Sum_probs=31.6

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ....|+++|..+ |++++|+||||+||||||++|+++.
T Consensus        16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~   53 (204)
T cd03282          16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA   53 (204)
T ss_pred             cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356678888776 6999999999999999999998764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.54  E-value=4.6e-08  Score=79.82  Aligned_cols=36  Identities=11%  Similarity=0.075  Sum_probs=31.2

Q ss_pred             CCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        70 ~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +..|++++.. |++++|+||||||||||||+|++...
T Consensus        15 ~v~n~i~l~~-g~~~~ltGpNg~GKSTllr~i~~~~~   50 (199)
T cd03283          15 RVANDIDMEK-KNGILITGSNMSGKSTFLRTIGVNVI   50 (199)
T ss_pred             eecceEEEcC-CcEEEEECCCCCChHHHHHHHHHHHH
Confidence            4568888885 69999999999999999999998653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.52  E-value=1.1e-07  Score=83.02  Aligned_cols=56  Identities=16%  Similarity=0.178  Sum_probs=45.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc------hHHHhhhceeccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE------DGEFLMRNGALPE  135 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~------~~~~~~~iG~v~Q  135 (189)
                      ++++++|+|||||||||++..|++.+.+. ++|.+.+.|.....      ....++.+.+++|
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~  175 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ  175 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe
Confidence            57999999999999999999999999888 79999998875421      1223446788776

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.52  E-value=8.9e-08  Score=77.28  Aligned_cols=28  Identities=32%  Similarity=0.514  Sum_probs=26.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+|++++|+||+|||||||+++|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4799999999999999999999999875

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.50  E-value=1.4e-07  Score=81.42  Aligned_cols=43  Identities=23%  Similarity=0.399  Sum_probs=36.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc--CC-ccEEEeecCCCCCch
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKED  123 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~--p~-G~I~i~g~di~~~~~  123 (189)
                      -.++||.|+||||||||+++|.+++.  |+ |.|.+.+.|-.....
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~  107 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPN  107 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccH
Confidence            48999999999999999999999987  65 889888887754433

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.49  E-value=1.7e-07  Score=74.17  Aligned_cols=33  Identities=21%  Similarity=0.191  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCCccEEE
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAA  113 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i  113 (189)
                      |++++|+||||||||||++.|+.++.+.|.+.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~   33 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHF   33 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEE
Confidence            568999999999999999999998765555544

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.47  E-value=1.8e-07  Score=80.00  Aligned_cols=54  Identities=15%  Similarity=0.298  Sum_probs=37.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      +++|+|+||||||||+++|++++++.+...+...++....... ++.+|+.++++
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~-r~~~g~~~~~p   54 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKG-RKETGITALDP   54 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHH-HHHhhcccccc
Confidence            5899999999999999999999988743334444554333322 34556655544

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.46  E-value=5.1e-07  Score=76.40  Aligned_cols=30  Identities=20%  Similarity=0.261  Sum_probs=27.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      .+|+.++|+|++|+|||||++.|+..+...
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~   43 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN   43 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence            369999999999999999999999988764

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.38  E-value=8.2e-08  Score=79.64  Aligned_cols=33  Identities=15%  Similarity=0.090  Sum_probs=28.9

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~  102 (189)
                      ...|++++.. +++++.|+||||+||||||++|+
T Consensus        18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~   51 (222)
T cd03285          18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG   51 (222)
T ss_pred             eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence            3567888886 57999999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.35  E-value=4.8e-07  Score=74.98  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=29.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDI  118 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di  118 (189)
                      ++||.|+||||||||+++|++++.+  . +.|.+...|-
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~   39 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDG   39 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCc
Confidence            5899999999999999999999974  4 6777755443

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.35  E-value=2.6e-07  Score=75.03  Aligned_cols=34  Identities=18%  Similarity=0.067  Sum_probs=28.5

Q ss_pred             CCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        70 ~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ...|++.+. +|++++|+|||||||||||++|++.
T Consensus        19 ~~~~~~~l~-~~~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          19 FVPNDINLG-SGRLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             eEeeeEEEc-CCeEEEEECCCCCccHHHHHHHHHH
Confidence            455677777 4799999999999999999999943

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PLN02796 D-glycerate 3-kinase

Probab=98.35  E-value=9.1e-07  Score=78.08  Aligned_cols=38  Identities=32%  Similarity=0.473  Sum_probs=31.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIF  119 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di~  119 (189)
                      .++||+|++|||||||+++|.+++++.    |.|.+++..+.
T Consensus       101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt  142 (347)
T PLN02796        101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT  142 (347)
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence            459999999999999999999999863    56777776653

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=98.34  E-value=3.6e-07  Score=73.35  Aligned_cols=24  Identities=38%  Similarity=0.623  Sum_probs=21.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +.+|+||||||||++|.+|+-.+.
T Consensus        24 ~~~i~G~NGsGKSnil~Ai~~~~~   47 (178)
T cd03239          24 FNAIVGPNGSGKSNIVDAICFVLG   47 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            899999999999999999986653

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.27  E-value=2.7e-07  Score=83.31  Aligned_cols=115  Identities=16%  Similarity=0.111  Sum_probs=66.2

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE--eecCCCCC-chHHHhh--------------hceeccc
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA--VTNDIFTK-EDGEFLM--------------RNGALPE  135 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i--~g~di~~~-~~~~~~~--------------~iG~v~Q  135 (189)
                      ++-.-.+|+++++||.||.||||-|++++|-++|. |....  +...+.+. ...++..              +..||-|
T Consensus        93 rlp~prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~  172 (592)
T KOG0063|consen   93 RLPIPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQ  172 (592)
T ss_pred             cCCCCCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHH
Confidence            33444579999999999999999999999999998 64310  11111000 0001100              0001111


Q ss_pred             hhHHHHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          136 ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       136 ~~~~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      -| ..+.......+....+.....++++.+.|....++-+.+||||+.||.+|+
T Consensus       173 ip-r~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia  225 (592)
T KOG0063|consen  173 IP-RAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIA  225 (592)
T ss_pred             HH-HHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhh
Confidence            10 000000000111122333456778888888889999999999999998874

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.25  E-value=1.4e-06  Score=79.25  Aligned_cols=64  Identities=17%  Similarity=0.041  Sum_probs=47.2

Q ss_pred             cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--------CchHHHhhhceeccc
Q 029723           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--------KEDGEFLMRNGALPE  135 (189)
Q Consensus        72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--------~~~~~~~~~iG~v~Q  135 (189)
                      .+.+.-..+|++++|+|+||+||||||++|+++.+++ |.|.+.|.+-..        .....+++.+.++.+
T Consensus       149 id~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~  221 (438)
T PRK07721        149 IDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT  221 (438)
T ss_pred             hheeeeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence            3444444579999999999999999999999999998 988887654421        122234567777754

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.23  E-value=7.2e-07  Score=80.94  Aligned_cols=68  Identities=13%  Similarity=0.146  Sum_probs=43.9

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec---CCCCCchHHH------hhhceeccchhH
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTKEDGEF------LMRNGALPEERI  138 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~---di~~~~~~~~------~~~iG~v~Q~~~  138 (189)
                      +.+.+.-..+|++++|+|+||+|||||+++|+++.+++ ..+...+.   ++.......+      +..+++++|+..
T Consensus       145 aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s  222 (434)
T PRK07196        145 AINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES  222 (434)
T ss_pred             eccceEeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence            33444334469999999999999999999999998876 43333332   2221111111      235788888743

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.22  E-value=1.5e-06  Score=70.60  Aligned_cols=39  Identities=28%  Similarity=0.497  Sum_probs=31.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di  118 (189)
                      .++.+++|+|+||||||||.+.|++.+. .+.+.+...|.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~-~~~~~~i~~D~   42 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG-DESIAVIPQDS   42 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC-CCceEEEeCCc
Confidence            3678999999999999999999999883 34566655554

>PRK08149 ATP synthase SpaL; Validated

Probab=98.22  E-value=9.2e-07  Score=80.13  Aligned_cols=65  Identities=15%  Similarity=0.009  Sum_probs=44.6

Q ss_pred             cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCCCCCchHHH----hhhceeccch
Q 029723           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGEF----LMRNGALPEE  136 (189)
Q Consensus        72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di~~~~~~~~----~~~iG~v~Q~  136 (189)
                      .+.+.-..+|++++|+|+||+||||||++|++...++    |.|.+.+.++.......+    ++++++|+..
T Consensus       142 id~ll~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~  214 (428)
T PRK08149        142 IDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT  214 (428)
T ss_pred             EeeeeeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence            3344334479999999999999999999999988765    555566666543222222    2467777654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.21  E-value=1.4e-06  Score=80.03  Aligned_cols=41  Identities=27%  Similarity=0.341  Sum_probs=33.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-c--cEEEeecCCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIF  119 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G--~I~i~g~di~  119 (189)
                      .+|.+++||||||+||||++..|++.+... |  +|.+...|..
T Consensus       254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~  297 (484)
T PRK06995        254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY  297 (484)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence            468999999999999999999999988654 5  4666666654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.21  E-value=6.8e-07  Score=76.83  Aligned_cols=34  Identities=26%  Similarity=0.239  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA  113 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i  113 (189)
                      ++.+++|+|+||+|||||++.|+|...++ |+|..
T Consensus       160 ~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~  194 (287)
T cd01854         160 KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISE  194 (287)
T ss_pred             ccceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence            35899999999999999999999998887 88865

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR01069 mutS2 MutS2 family protein

Probab=98.20  E-value=5e-07  Score=87.22  Aligned_cols=38  Identities=24%  Similarity=0.221  Sum_probs=30.4

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhc-ccCC
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKF-LRDK  108 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl-l~p~  108 (189)
                      .-|++.+.....+++|+||||+||||||++|+++ +.+.
T Consensus       312 vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq  350 (771)
T TIGR01069       312 VPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ  350 (771)
T ss_pred             EeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH
Confidence            3466666655589999999999999999999998 4444

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.19  E-value=1.9e-06  Score=76.33  Aligned_cols=39  Identities=26%  Similarity=0.210  Sum_probs=35.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      .+|++++|+|+||+|||||+++|+|...++ |.|.+++..
T Consensus       193 ~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~  232 (356)
T PRK01889        193 SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSK  232 (356)
T ss_pred             hcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCC
Confidence            368999999999999999999999999988 999987643

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.18  E-value=1.7e-06  Score=68.27  Aligned_cols=26  Identities=35%  Similarity=0.487  Sum_probs=24.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      |.+++|+||||||||||++.|++.++
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            67999999999999999999999764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.17  E-value=1.9e-06  Score=74.72  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV  114 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~  114 (189)
                      .|+.++|+|++||||||||++|++++++. +.+.+.
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie  178 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE  178 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence            57899999999999999999999999887 655553

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.14  E-value=1.4e-06  Score=71.88  Aligned_cols=35  Identities=14%  Similarity=0.128  Sum_probs=30.5

Q ss_pred             CCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        70 ~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ...|++++..+.++++|+|||||||||||++|+++
T Consensus        19 ~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~   53 (216)
T cd03284          19 FVPNDTELDPERQILLITGPNMAGKSTYLRQVALI   53 (216)
T ss_pred             eEeeeEEecCCceEEEEECCCCCChHHHHHHHHHH
Confidence            35688888877799999999999999999999753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK00098 GTPase RsgA; Reviewed

Probab=98.14  E-value=1.4e-06  Score=75.32  Aligned_cols=34  Identities=26%  Similarity=0.294  Sum_probs=30.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA  113 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i  113 (189)
                      +|.+++|+|+||+|||||++.|++...+. |+|..
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~  197 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE  197 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence            47899999999999999999999998877 88875

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.13  E-value=1.2e-06  Score=79.73  Aligned_cols=61  Identities=10%  Similarity=0.090  Sum_probs=43.1

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCCCCCchH---HHhhhceeccchhH
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDG---EFLMRNGALPEERI  138 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~  138 (189)
                      ..+|++++|+|+||+||||||++|+++.+++    |.|.+.+.++...-..   .-.+..++|+|...
T Consensus       172 I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a  239 (455)
T PRK07960        172 VGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA  239 (455)
T ss_pred             ccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence            3569999999999999999999999999886    5666666666321000   00235677777653

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.10  E-value=2.6e-06  Score=70.21  Aligned_cols=33  Identities=15%  Similarity=0.164  Sum_probs=28.0

Q ss_pred             CCcccCcccCCC-cEEEEEcCCCchHHHHHHHHH
Q 029723           70 PPILSRNFNERA-FTVGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        70 ~~~~~~~f~~~G-eivgLiGpNGSGKTTLL~~L~  102 (189)
                      ..-|++.+.... .++.|+||||+||||||+.|+
T Consensus        17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~   50 (213)
T cd03281          17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA   50 (213)
T ss_pred             eEcceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence            455777777654 889999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.09  E-value=3.9e-06  Score=73.64  Aligned_cols=47  Identities=17%  Similarity=0.108  Sum_probs=37.9

Q ss_pred             cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      .+.+.-..+|++++|+|+||+||||||++|+++..++ +.+...|.+-
T Consensus        60 iD~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~  107 (326)
T cd01136          60 IDGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERG  107 (326)
T ss_pred             EeeeeEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCC
Confidence            3344333469999999999999999999999999998 8777776543

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.07  E-value=6.3e-06  Score=59.85  Aligned_cols=28  Identities=39%  Similarity=0.452  Sum_probs=25.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      +..+.|+||+|+|||||++.|+..+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            5789999999999999999999998766

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.06  E-value=3.8e-06  Score=66.37  Aligned_cols=39  Identities=36%  Similarity=0.555  Sum_probs=32.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      .+|++++|+|++||||||+.+.|++.+.+. +.+.+.+.|
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D   41 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD   41 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence            468999999999999999999999998766 566654444

>TIGR00606 rad50 rad50

Probab=98.06  E-value=5.2e-06  Score=84.30  Aligned_cols=58  Identities=14%  Similarity=0.038  Sum_probs=40.8

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHH----hcccCC--ccEEEeecCCCCCchHHHhhhceeccc
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALC----KFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~----Gll~p~--G~I~i~g~di~~~~~~~~~~~iG~v~Q  135 (189)
                      .+.|.  ..+++|+|||||||||||.+|+    |.++|.  |.+.|.+.++...  ......|.++|+
T Consensus        23 ~I~F~--~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~--~~~~a~V~l~F~   86 (1311)
T TIGR00606        23 IIDFF--SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE--TDVRAQIRLQFR   86 (1311)
T ss_pred             eeecc--cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc--HhhhheeEEEEE
Confidence            34454  3589999999999999999995    888884  8877776655322  233345555554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04155 Arl3 Arl3 subfamily

Probab=98.03  E-value=4.5e-06  Score=64.74  Aligned_cols=37  Identities=16%  Similarity=0.085  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhc----ccCC-c----cEEEeecC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKF----LRDK-Y----SLAAVTND  117 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gl----l~p~-G----~I~i~g~d  117 (189)
                      .-.++|+|+||||||||++.|++.    ..|+ |    .+.+.+.+
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~   59 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFK   59 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEE
Confidence            356999999999999999999997    4466 6    55554443

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.03  E-value=5.4e-06  Score=67.39  Aligned_cols=36  Identities=25%  Similarity=0.547  Sum_probs=30.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEeecCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDI  118 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g~di  118 (189)
                      ++.|+||+|||||||++.|++.+.+ . +.|...+.++
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~   40 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI   40 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence            6889999999999999999988764 3 6777777655

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK07429 phosphoribulokinase; Provisional

Probab=98.01  E-value=8e-06  Score=71.68  Aligned_cols=28  Identities=29%  Similarity=0.620  Sum_probs=26.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      --+++|.|++|||||||++.|++++.+.
T Consensus         8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~   35 (327)
T PRK07429          8 PVLLGVAGDSGCGKTTFLRGLADLLGEE   35 (327)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence            3689999999999999999999999877

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.01  E-value=8.3e-07  Score=81.48  Aligned_cols=105  Identities=9%  Similarity=-0.046  Sum_probs=61.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHH--hcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHH
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALC--KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDI  155 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~--Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~  155 (189)
                      ++|.++.|.|++|||||||...++  |+.+.. ..++|.-.. ...+..+..+.+|+-+++...   -+....+... ..
T Consensus        19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE-~~~~l~~~~~~~G~~~~~~~~---~g~l~~~~~~-~~   93 (484)
T TIGR02655        19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE-SPQDIIKNARSFGWDLQKLVD---EGKLFILDAS-PD   93 (484)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-CHHHHHHHHHHcCCCHHHHhh---cCceEEEecC-ch
Confidence            368999999999999999988763  555533 334444321 111222234467876665431   1110001000 11


Q ss_pred             HHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          156 SINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       156 ~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                      .....+++.+++....++.+.++|+|++|||.|
T Consensus        94 ~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvI  126 (484)
T TIGR02655        94 PEGQDVVGGFDLSALIERINYAIRKYKAKRVSI  126 (484)
T ss_pred             hccccccccCCHHHHHHHHHHHHHHhCCcEEEE
Confidence            112234566777777888888999999998876

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.00  E-value=6.6e-06  Score=74.44  Aligned_cols=40  Identities=25%  Similarity=0.252  Sum_probs=35.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      .+|++++|+|+||+||||||++|+++.+|+ |.|.+.|...
T Consensus       138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~  178 (418)
T TIGR03498       138 CRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG  178 (418)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence            368999999999999999999999999998 8888887644

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.98  E-value=5e-06  Score=69.19  Aligned_cols=42  Identities=14%  Similarity=0.101  Sum_probs=33.4

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHh-cccCC-ccE
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCK-FLRDK-YSL  111 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~G-ll~p~-G~I  111 (189)
                      ...|+++|.. +|+++.|+||||+||||||++|++ .+.+. |..
T Consensus        19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~   63 (222)
T cd03287          19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSF   63 (222)
T ss_pred             EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence            3457788874 589999999999999999999999 44444 543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.98  E-value=5.2e-06  Score=65.51  Aligned_cols=47  Identities=17%  Similarity=0.123  Sum_probs=30.7

Q ss_pred             EcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           87 GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        87 iGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      +|+||||||||+++|++.+   |.+.+++..+. .....++...|+.+|+.
T Consensus         1 ~G~sGsGKSTla~~la~~l---~~~~~~~d~~~-~~~~~~~~~~g~~~~~~   47 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL---HAAFLDGDFLH-PRRNIEKMASGEPLNDD   47 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh---CCeEEeCccCC-chhhhccccCCCCCChh
Confidence            6999999999999999987   46777763331 11111223456777663

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.97  E-value=5.7e-06  Score=74.89  Aligned_cols=29  Identities=28%  Similarity=0.303  Sum_probs=25.5

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +..+|++++||||||+||||||+.|++.+
T Consensus       187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        187 IIEQGGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44578999999999999999999998853

>PLN02165 adenylate isopentenyltransferase

Probab=97.97  E-value=8.9e-06  Score=71.55  Aligned_cols=48  Identities=23%  Similarity=0.174  Sum_probs=38.5

Q ss_pred             CcccCCCcEEEEEcCCCchHHHHHHHHHhccc---CC-ccE-EEeecCCCCCc
Q 029723           75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSL-AAVTNDIFTKE  122 (189)
Q Consensus        75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~---p~-G~I-~i~g~di~~~~  122 (189)
                      .-+..+|.+++|+||+|||||||...|++.+.   .+ +++ .+.|.+|.+..
T Consensus        37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTak   89 (334)
T PLN02165         37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQ   89 (334)
T ss_pred             cccCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCC
Confidence            34666799999999999999999999999875   24 666 56888886543

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.97  E-value=6.7e-06  Score=67.01  Aligned_cols=48  Identities=21%  Similarity=0.369  Sum_probs=33.6

Q ss_pred             CcccCcccCCC-cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723           71 PILSRNFNERA-FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        71 ~~~~~~f~~~G-eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di  118 (189)
                      ..++..++..| -+++|+|+.|||||||++.++..+...-++.+...+.
T Consensus        11 ~~~~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~   59 (207)
T TIGR00073        11 EKNRERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDV   59 (207)
T ss_pred             HHHHHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            34555566666 7789999999999999999987644223444444454

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.97  E-value=7.8e-06  Score=65.16  Aligned_cols=42  Identities=24%  Similarity=0.279  Sum_probs=33.3

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhcccCCc--cEEEeecCC
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDKY--SLAAVTNDI  118 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G--~I~i~g~di  118 (189)
                      +..+|+++.|+|++|||||||.+.|.+.+...|  .+.+++.++
T Consensus        14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~   57 (184)
T TIGR00455        14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV   57 (184)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence            445789999999999999999999999986543  355655443

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.95  E-value=6.7e-06  Score=61.71  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhc
Q 029723           84 VGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ++|+|++|||||||++.|++.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            689999999999999999997

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.95  E-value=9.2e-06  Score=72.55  Aligned_cols=45  Identities=27%  Similarity=0.313  Sum_probs=34.4

Q ss_pred             cccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-c--cEEEeecCCCC
Q 029723           76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFT  120 (189)
Q Consensus        76 ~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G--~I~i~g~di~~  120 (189)
                      .+..+|.+++|+||||+||||++..|+..+... |  .|.+...|...
T Consensus       132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R  179 (374)
T PRK14722        132 ALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR  179 (374)
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence            455678999999999999999999999865322 3  56666666543

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.94  E-value=1.1e-05  Score=67.20  Aligned_cols=36  Identities=22%  Similarity=0.158  Sum_probs=29.4

Q ss_pred             CCCcEEEEEcCCCchHHHH-HHHHHhcccCC-ccEEEe
Q 029723           79 ERAFTVGIGGPVGTGKTAL-MLALCKFLRDK-YSLAAV  114 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTL-L~~L~Gll~p~-G~I~i~  114 (189)
                      ++|+++.|+|+|||||||| ++++++++++. ..+++.
T Consensus        22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~   59 (230)
T PRK08533         22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS   59 (230)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            4689999999999999999 78999887665 444444

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.94  E-value=1e-05  Score=71.14  Aligned_cols=41  Identities=29%  Similarity=0.425  Sum_probs=35.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~  120 (189)
                      +..+++|+|++|||||||+..|...+... .+|.+...|...
T Consensus        55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s   96 (332)
T PRK09435         55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS   96 (332)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence            45799999999999999999999998876 578888888754

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.93  E-value=5.4e-06  Score=65.46  Aligned_cols=32  Identities=22%  Similarity=0.143  Sum_probs=26.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHH---hcccCC-ccEE
Q 029723           81 AFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLA  112 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~---Gll~p~-G~I~  112 (189)
                      -.+++|+|++|||||||++.|+   |+..++ |.+.
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~   38 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLL   38 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHH
Confidence            4689999999999999999999   665555 6554

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.93  E-value=8.6e-06  Score=83.30  Aligned_cols=41  Identities=22%  Similarity=0.273  Sum_probs=34.5

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      |.-.+.+++|+|+|||||||+|++|++++.|. |.+.+++.+
T Consensus        23 ~~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~   64 (1486)
T PRK04863         23 FDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT   64 (1486)
T ss_pred             EEecCCeEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence            33334699999999999999999999999888 888887654

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.93  E-value=8.3e-06  Score=76.63  Aligned_cols=36  Identities=25%  Similarity=0.474  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND  117 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~d  117 (189)
                      -+|+|.||||||||||+++|+++++..+.|.+++..
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~  101 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN  101 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence            689999999999999999999998433888887753

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=97.92  E-value=9.6e-06  Score=73.67  Aligned_cols=48  Identities=25%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             CCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        70 ~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      .+.+.+.-..+|++++|+|+||+||||||++|+++..++ +.+.+.|..
T Consensus       144 ~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR  192 (433)
T PRK07594        144 RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192 (433)
T ss_pred             eeeeeeeecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence            344444444579999999999999999999999999998 777777654

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.91  E-value=8.4e-06  Score=64.42  Aligned_cols=41  Identities=22%  Similarity=0.307  Sum_probs=32.8

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEeecC
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTND  117 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g~d  117 (189)
                      +..+|.++.|+|++||||||+.+.|...+.. . +.+.+++..
T Consensus         3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~   45 (176)
T PRK05541          3 MKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE   45 (176)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence            4457899999999999999999999988763 3 566666533

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.91  E-value=8.9e-06  Score=78.29  Aligned_cols=41  Identities=29%  Similarity=0.363  Sum_probs=34.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-c--cEEEeecCCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFT  120 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G--~I~i~g~di~~  120 (189)
                      +|++++||||||+||||++..|++.+... |  +|.+...|...
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R  227 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR  227 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence            58999999999999999999999988544 5  68887777644

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.91  E-value=1.4e-05  Score=72.79  Aligned_cols=48  Identities=17%  Similarity=0.136  Sum_probs=37.9

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      ..+.+.-..+|++++|+|+||+||||||++|++..+++ +.+...|..-
T Consensus       153 ~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~  201 (440)
T TIGR01026       153 SIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERG  201 (440)
T ss_pred             eeeeccccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecc
Confidence            33444334469999999999999999999999999988 7777766543

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=97.90  E-value=1.3e-05  Score=72.65  Aligned_cols=47  Identities=17%  Similarity=0.112  Sum_probs=37.5

Q ss_pred             cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      .+.+.-..+|++++|+|+||+||||||++|++...++ +.+...|..-
T Consensus       136 id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~  183 (422)
T TIGR02546       136 IDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERG  183 (422)
T ss_pred             ehhhccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCC
Confidence            3344333468999999999999999999999999998 7777766543

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.90  E-value=9.7e-06  Score=73.45  Aligned_cols=38  Identities=29%  Similarity=0.450  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDI  118 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di  118 (189)
                      -.+|||+|++|||||||++.|.+++++.    +.|.+++..+
T Consensus       212 PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL  253 (460)
T PLN03046        212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL  253 (460)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence            3889999999999999999999998753    5566666654

>PRK09099 type III secretion system ATPase; Provisional

Probab=97.90  E-value=1.4e-05  Score=72.79  Aligned_cols=40  Identities=23%  Similarity=0.276  Sum_probs=35.5

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      ..+|++++|+|+||+||||||++|++...++ +.|.+.|..
T Consensus       160 i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer  200 (441)
T PRK09099        160 LGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER  200 (441)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence            3479999999999999999999999999988 888877754

>PRK05922 type III secretion system ATPase; Validated

Probab=97.89  E-value=1.4e-05  Score=72.65  Aligned_cols=44  Identities=16%  Similarity=0.210  Sum_probs=36.2

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      ...-..+|+.++|+|+||+||||||++|++..+++ +.+...|..
T Consensus       150 ~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer  194 (434)
T PRK05922        150 AFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER  194 (434)
T ss_pred             ceEEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence            34444569999999999999999999999998888 777666653

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.87  E-value=1.8e-05  Score=82.00  Aligned_cols=31  Identities=13%  Similarity=-0.036  Sum_probs=25.5

Q ss_pred             HHHHHhhcCCch-hhccccccCChHHHHhhhc
Q 029723          158 NLGPLEELSNLF-KADLLLCESGGGNLQTISF  188 (189)
Q Consensus       158 v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~  188 (189)
                      ..+.|..+||.. .+.++..+|||||.||+-+
T Consensus      1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikL 1710 (1809)
T PRK00635       1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKI 1710 (1809)
T ss_pred             HHHHHHHcCCCeeeCCCcCCccCchHHHHHHH
Confidence            445678889876 5788999999999999865

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=97.87  E-value=1.2e-05  Score=63.25  Aligned_cols=35  Identities=29%  Similarity=0.314  Sum_probs=27.2

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..|.+.|.. +.++.|+|||||||||+|+.|+-.+-
T Consensus        12 ~~~~i~~~~-~~~~~i~G~NgsGKS~~l~~i~~~~~   46 (162)
T cd03227          12 VPNDVTFGE-GSLTIITGPNGSGKSTILDAIGLALG   46 (162)
T ss_pred             eccEEecCC-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445666654 36899999999999999999866543

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.87  E-value=1.1e-05  Score=65.20  Aligned_cols=31  Identities=19%  Similarity=0.350  Sum_probs=25.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCC-ccEEE
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAA  113 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i  113 (189)
                      .++|+|+||+|||||+++|+|...++ |.+..
T Consensus         3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~   34 (197)
T cd04104           3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPT   34 (197)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCCCCcccc
Confidence            37999999999999999999977665 55443

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.86  E-value=1.3e-05  Score=60.78  Aligned_cols=36  Identities=31%  Similarity=0.360  Sum_probs=30.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      ++.|.|+||+|||||++.+++...+. +.+.+...+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~   37 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE   37 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence            47899999999999999999988766 7887776654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=97.85  E-value=1.8e-05  Score=71.49  Aligned_cols=40  Identities=18%  Similarity=0.306  Sum_probs=34.1

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      ..+|++++|+|+||+||||||++|+++.+++ +.+...|..
T Consensus       134 i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer  174 (411)
T TIGR03496       134 VGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER  174 (411)
T ss_pred             EecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence            3469999999999999999999999999988 666666654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.84  E-value=1.8e-05  Score=68.28  Aligned_cols=47  Identities=32%  Similarity=0.318  Sum_probs=37.0

Q ss_pred             ccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723           73 LSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (189)
Q Consensus        73 ~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~  119 (189)
                      .++.+.. ++.+++|+|++|||||||++.|+..+... .++.+...|..
T Consensus        25 ~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~   73 (300)
T TIGR00750        25 DRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS   73 (300)
T ss_pred             HhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            3444433 47999999999999999999999988766 57777777754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK09862 putative ATP-dependent protease; Provisional

Probab=97.84  E-value=2e-05  Score=72.93  Aligned_cols=44  Identities=27%  Similarity=0.284  Sum_probs=36.9

Q ss_pred             CcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           75 RNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        75 ~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      +.+.. .|+.+.|+|+||||||||+++|.++++|. |++.+....|
T Consensus       203 l~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i  248 (506)
T PRK09862        203 LEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI  248 (506)
T ss_pred             hheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence            33443 47999999999999999999999999997 9888776554

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.83  E-value=1.8e-05  Score=63.00  Aligned_cols=33  Identities=27%  Similarity=0.310  Sum_probs=24.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEE
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA  112 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~  112 (189)
                      ++.+++|+|++|+|||||+|.|.+-.... +.|.
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is   67 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS   67 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence            35899999999999999999999975543 5554

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.83  E-value=1.3e-05  Score=64.43  Aligned_cols=35  Identities=26%  Similarity=0.222  Sum_probs=28.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeec
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTN  116 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~  116 (189)
                      .+++|+|++|||||||++.|+.++.+.    |.|...+.
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~   45 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            489999999999999999999998763    55655444

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=97.82  E-value=2.1e-05  Score=71.10  Aligned_cols=46  Identities=17%  Similarity=0.125  Sum_probs=37.8

Q ss_pred             ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      +.+.-..+|++++|+|+||+||||||++|++..+++ |.|.+.|...
T Consensus       129 D~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~  175 (413)
T TIGR03497       129 DGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG  175 (413)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence            333333469999999999999999999999999988 8887777654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.82  E-value=1.4e-05  Score=61.41  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=23.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      +++|+||+|||||||++.|+..+++.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~   26 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPN   26 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence            47899999999999999999987654

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.82  E-value=1.4e-05  Score=58.80  Aligned_cols=23  Identities=39%  Similarity=0.625  Sum_probs=21.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +|+|.|++|||||||.+.|+..+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999865

...

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=97.81  E-value=2.8e-05  Score=61.43  Aligned_cols=28  Identities=29%  Similarity=0.298  Sum_probs=25.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKYS  110 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~  110 (189)
                      +++|.|++|||||||++.|+..+.+.|.
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~   29 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGY   29 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            6899999999999999999999876653

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd00879 Sar1 Sar1 subfamily

Probab=97.80  E-value=1.8e-05  Score=62.58  Aligned_cols=30  Identities=23%  Similarity=0.212  Sum_probs=24.5

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .+.+..+.-.++|+|++|||||||++.+++
T Consensus        12 ~~~~~~~~~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879          12 SLGLYNKEAKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             HhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence            345555555679999999999999999998

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.79  E-value=2.1e-05  Score=61.35  Aligned_cols=37  Identities=35%  Similarity=0.472  Sum_probs=32.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~  119 (189)
                      +++|+|++|||||||++.++..+.+. .++.+...|..
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~   38 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPS   38 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Confidence            37899999999999999999988877 78888887764

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.79  E-value=1.9e-05  Score=62.09  Aligned_cols=34  Identities=32%  Similarity=0.500  Sum_probs=28.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCc-cEEEeec
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTN  116 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G-~I~i~g~  116 (189)
                      +++|+|++|||||||++.|+..+++.| +|.+...
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~   35 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKH   35 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence            579999999999999999999988765 7766543

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.79  E-value=1.5e-05  Score=60.28  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=21.3

Q ss_pred             EEEEcCCCchHHHHHHHHH--hcccCC
Q 029723           84 VGIGGPVGTGKTALMLALC--KFLRDK  108 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~--Gll~p~  108 (189)
                      ++|+|++|||||||++.|+  +..++.
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~   28 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLART   28 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeee
Confidence            6899999999999999999  555543

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.78  E-value=2.6e-05  Score=60.13  Aligned_cols=29  Identities=31%  Similarity=0.332  Sum_probs=26.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      .+|.++.|.|+.|||||||++.|+..+..
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            46899999999999999999999987653

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.78  E-value=2.4e-05  Score=67.07  Aligned_cols=44  Identities=25%  Similarity=0.328  Sum_probs=34.6

Q ss_pred             CcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-c--cEEEeecCC
Q 029723           75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDI  118 (189)
Q Consensus        75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G--~I~i~g~di  118 (189)
                      ..|..++.+++|+||+|+||||++..|+..+... |  +|.+...|.
T Consensus       188 ~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~  234 (282)
T TIGR03499       188 DEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT  234 (282)
T ss_pred             ccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence            3344568899999999999999999999877543 3  677777665

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.77  E-value=4.3e-05  Score=63.79  Aligned_cols=29  Identities=41%  Similarity=0.470  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      ...++.|+||||+|||||++.++..+.+.
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~   70 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLDQE   70 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence            34689999999999999999999987754

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=97.77  E-value=2.8e-05  Score=70.71  Aligned_cols=46  Identities=20%  Similarity=0.061  Sum_probs=37.3

Q ss_pred             ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      +.+.-..+|++++|+|+||+|||||+++|++...++ +.|...|..-
T Consensus       149 d~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGerg  195 (434)
T PRK08472        149 DGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERG  195 (434)
T ss_pred             hhcceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccc
Confidence            334333479999999999999999999999988877 8777777654

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.76  E-value=7e-05  Score=70.87  Aligned_cols=38  Identities=16%  Similarity=0.108  Sum_probs=29.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-c--------cEEEeecCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-Y--------SLAAVTNDI  118 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G--------~I~i~g~di  118 (189)
                      ...+.|+||||+|||||+++|.++.++. |        -|.+++..+
T Consensus       175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l  221 (615)
T TIGR02903       175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL  221 (615)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence            4679999999999999999999987543 3        366666544

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
2hf9_A	226	Crystal Structure Of Hypb From Methanocaldococcus J		1e-04
2hf8_A	226	Crystal Structure Of Hypb From Methanocaldococcus J		3e-04

>pdb|2HF9|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus Jannaschii In The Triphosphate Form Length = 226

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 88  GPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147
           G +G+GKT L+  L   L+DKY +A +  D+  K D E + ++GA    ++  + TG   
Sbjct: 45  GAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGA----KVVPLNTGKEC 100
Query: 148 HAAIREDISINLGPLEELSNLFKADLLLCESGG 180
           H     D  +    LE+L NL + DLL  E+ G
Sbjct: 101 HL----DAHLVGHALEDL-NLDEIDLLFIENVG 128

>pdb|2HF8|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus Jannaschii In The Triphosphate Form, In Complex With Zinc Length = 226

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 88  GPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147
           G +G+GKT L+  L   L+DKY +A +  D+  K D E   ++GA    ++  + TG   
Sbjct: 45  GAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERXEKHGA----KVVPLNTGKEC 100
Query: 148 HAAIREDISINLGPLEELSNLFKADLLLCESGG 180
           H     D  +    LE+L NL + DLL  E+ G
Sbjct: 101 HL----DAHLVGHALEDL-NLDEIDLLFIENVG 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
2hf9_A	226	Probable hydrogenase nickel incorporation protein	3e-41
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	4e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1pq4_A	291	Periplasmic binding protein component of AN ABC T	2e-04
1pq4_A	291	Periplasmic binding protein component of AN ABC T	2e-04

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Length = 226

 Score =  138 bits (349), Expect = 3e-41
 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 20/124 (16%)

Query: 71  PILSRN----------FNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF 119
            IL  N           N+         G +G+GKT L+  L   L+DKY +A +  D+ 
Sbjct: 17  DILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76

Query: 120 TKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESG 179
            K D E + ++GA    ++  + TG   H     D  +    LE+L NL + DLL  E+ 
Sbjct: 77  AKFDAERMEKHGA----KVVPLNTGKECHL----DAHLVGHALEDL-NLDEIDLLFIENV 127

Query: 180 GGNL 183
           G  +
Sbjct: 128 GNLI 131

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} Length = 221

 Score =  129 bits (327), Expect = 4e-38
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 75  RNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL 133
               E     V I G +G+GKT L+    + + ++  + A+  D+ +K D E + R G  
Sbjct: 23  EALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGI- 81

Query: 134 PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNL 183
              +  A+ TG   H     D  +    L++ S+    DLLL E+ G  +
Sbjct: 82  ---KAEAISTGKECHL----DAHMIYHRLKKFSDC---DLLLIENVGNLI 121

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 17  HDNDHDHTHEKNHGDSTATSWVGSDGRVYHS-HDGLAPHSHEPIYSPGYFSRRAPPILS- 74
              ++         +    S      R+Y    D L  ++   +++  Y   R  P L  
Sbjct: 87  LRINYKFLMSPIKTEQRQPS---MMTRMYIEQRDRL--YNDNQVFAK-YNVSRLQPYLKL 140

Query: 75  RN--FNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF------TKEDGE 125
           R      R A  V I G +G+GKT + L +C           +   IF            
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 126 FLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL-EELSNLFK 170
            L     L    +  ++      +    +I + +  +  EL  L K
Sbjct: 198 VLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 5/28 (17%), Positives = 6/28 (21%)

Query: 4   HDHHTHDHAHHHHHDNDHDHTHEKNHGD 31
             H  H H  H H         +     
Sbjct: 102 EGHDDHSHDGHDHGSESEKEKAKGALMV 129

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 12/51 (23%)

Query: 4   HDHHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPH 54
              H  +  H  H  + HDH  E     +              +     PH
Sbjct: 95  DHSHGEEEGHDDHSHDGHDHGSESEKEKA------------KGALMVADPH 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.94
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.93
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.93
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.93
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.93
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.93
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.93
1g6h_A	257	High-affinity branched-chain amino acid transport	99.93
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.93
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.92
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.92
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.92
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.92
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.92
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.92
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.92
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.92
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.92
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.92
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.91
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.91
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.91
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.91
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.91
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.91
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.91
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.91
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.91
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.9
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.89
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.89
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.89
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.88
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.88
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.87
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.87
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.86
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.86
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.85
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.85
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.85
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.85
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.81
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.8
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.8
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.79
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.79
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.76
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.76
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.76
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.76
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.74
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.73
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.73
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.71
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.65
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.65
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.63
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.61
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.6
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.59
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.58
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.53
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.52
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.52
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.5
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.5
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.48
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.47
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.46
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.46
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.45
2og2_A	359	Putative signal recognition particle receptor; nuc	99.43
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.41
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.4
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.39
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.37
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.37
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.37
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.36
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.34
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.32
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.3
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.28
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.27
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.23
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.21
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.21
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.2
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.19
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.19
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.17
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.17
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.16
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.14
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.14
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.14
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.11
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.11
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.1
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.1
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.1
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.09
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.07
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.05
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.04
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.04
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.03
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.03
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.02
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.98
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.96
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.96
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.95
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.95
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.93
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.92
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.92
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.89
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.88
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.86
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.86
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.84
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.83
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.83
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.82
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.82
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.81
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.8
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.8
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.78
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.76
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.74
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.73
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.72
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.7
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.65
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.64
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.64
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.62
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.62
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.61
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.6
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.57
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.55
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.54
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.51
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.51
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.51
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.49
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.48
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.46
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.44
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.43
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.43
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.42
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.42
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.4
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.39
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.37
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.35
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.32
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.32
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.29
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.29
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.27
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.23
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.23
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.22
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.2
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.19
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.17
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.12
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.09
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.08
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.08
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.07
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.07
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.06
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.0
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.98
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.98
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.96
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.95
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.95
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.94
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.94
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.93
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.91
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.91
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.89
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.88
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.86
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.86
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.84
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.79
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.77
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.77
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.77
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.76
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.75
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.69
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.69
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.67
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.67
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.66
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.64
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.63
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.61
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.6
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.6
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.59
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.56
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.55
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.54
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.54
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.53
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.53
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.51
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.49
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.49
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.47
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.46
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.46
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.45
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.44
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.43
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.43
1via_A	175	Shikimate kinase; structural genomics, transferase	97.42
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.42
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.38
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.35
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.34
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.34
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.34
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.34
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.33
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.32
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.32
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.32
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.31
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.31
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.3
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.29
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.29
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.27
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.26
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.26
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.26
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.24
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.23
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.23
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.23
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.23
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.22
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.21
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.2
3bos_A	242	Putative DNA replication factor; P-loop containing	97.2
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.2
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.2
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.19
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.18
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.17
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.17
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.16
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.15
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.15
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.14
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.14
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.14
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.12
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.12
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.12
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.12
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.12
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.11
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.11
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.11
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.11
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.11
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.1
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.1
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.1
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.1
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.1
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.09
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.09
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.09
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.09
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.09
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.09
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.08
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.15
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.08
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.08
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.08
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.07
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.06
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.06
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.06
3ice_A	422	Transcription termination factor RHO; transcriptio	97.06
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.05
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.05
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.05
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.05
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.05
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.04
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.04
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.03
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.03
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.02
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.02
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.02
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.01
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.01
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.01
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.01
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.0
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.0
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.0
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.99
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.99
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.99
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.98
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.98
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.97
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.96
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.95
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.95
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.94
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.94
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.94
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.94
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.94
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.93
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.93
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.93
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.93
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.93
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.93
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.9
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.9
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.9
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.89
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.89
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.89
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.88
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.88
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.88
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.88
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.88
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.87
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.86
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.86
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.86
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.86
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.86
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.85
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.85
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.85
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.85
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.84
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.83
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.83
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.82
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.82
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.82
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.81
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.81
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.81
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.81
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.81
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.81
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.8
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.8
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.8
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.79
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.79
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.79
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.79
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.79
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.78
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.77
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.77
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.76
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.76
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.76
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.75
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.74
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.74
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.74
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.74
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.73
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.73
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.72
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.72
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.72
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.72
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.71
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.71
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.71
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.7
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.7
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.69
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.67
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.67
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.66
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.66
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.66
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.66
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.63
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.62
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.6
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.59
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.58
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.56
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.53
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.53
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.52
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.5
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.5
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.5
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.49
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.49
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.48
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.48
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.48
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.48
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.47
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.46
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.46
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.43
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.43
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.42
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.41
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.4
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.39
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.39
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.37
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.33
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.32
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.32
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.32
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.3
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.23
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.18
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.17
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.17
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.16
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.15
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.13
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.11
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.07
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.07
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.07
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.05
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.04
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.04
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.02
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.02
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.01
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.01
2qgz_A	308	Helicase loader, putative primosome component; str	95.98
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.98
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.98
3io5_A	333	Recombination and repair protein; storage dimer, i	95.97
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.97
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.94
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.93
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	95.93
3pvs_A	447	Replication-associated recombination protein A; ma	95.93
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.93
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.93
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.93
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.89
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	95.89
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.88
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.86
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.84
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.83
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.83
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.8
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.8
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.79
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.79
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	95.78
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.75
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.75
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.72
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	95.72
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	95.71

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.94  E-value=2.8e-27  Score=200.55  Aligned_cols=119  Identities=15%  Similarity=0.031  Sum_probs=95.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC--chHHHhhhceeccchhH--------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--------  138 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...  ...++++.||||||++.        
T Consensus        23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv  102 (275)
T 3gfo_A           23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASV  102 (275)
T ss_dssp             EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBH
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcH
Confidence            556666664 59999999999999999999999999999 9999999998422  23356778999999873        


Q ss_pred             -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus       103 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iA  155 (275)
T 3gfo_A          103 YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA  155 (275)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence             444443221 223344567899999999999899999999999999999974

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.93  E-value=7.7e-27  Score=205.12  Aligned_cols=120  Identities=16%  Similarity=0.072  Sum_probs=98.2

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~------  138 (189)
                      .+.++++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++...+..+   +++.||||||++.      
T Consensus        42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T  121 (366)
T 3tui_C           42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT  121 (366)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred             EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence            3566777765 59999999999999999999999999999 99999999998766544   3578999999875      


Q ss_pred             --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.++.. ......+..+++.++|+.++|.+..++++.+|||||||||+|+
T Consensus       122 V~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIA  175 (366)
T 3tui_C          122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA  175 (366)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence              45544321 1223345567899999999999999999999999999999974

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.93  E-value=1.2e-26  Score=195.59  Aligned_cols=119  Identities=16%  Similarity=0.157  Sum_probs=98.9

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      .+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.++|++|++.        +
T Consensus        25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e  104 (266)
T 4g1u_C           25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE  104 (266)
T ss_dssp             EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence            3455666654 59999999999999999999999999998 999999999987777777888999999864        5


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++.... ...+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus       105 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iA  153 (266)
T 4g1u_C          105 VIQMGRAPY-GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLA  153 (266)
T ss_dssp             HHHGGGTTS-CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHH
T ss_pred             HHHhhhhhc-CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence            565554322 2233567788999999999889999999999999999974

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.93  E-value=1.4e-26  Score=202.69  Aligned_cols=118  Identities=17%  Similarity=0.104  Sum_probs=95.0

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      .+.++++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++.....  .++.||||||++.        +
T Consensus        29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~e  106 (355)
T 1z47_A           29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQNYALFQHMTVYD  106 (355)
T ss_dssp             TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEECGGGCCCTTSCHHH
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEEecCcccCCCCCHHH
Confidence            3566667764 69999999999999999999999999999 999999999865433  3568999999864        5


Q ss_pred             HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++.. ......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus       107 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalA  157 (355)
T 1z47_A          107 NVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA  157 (355)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence            5555421 1122234467889999999999899999999999999999974

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.93  E-value=2.2e-26  Score=190.38  Aligned_cols=119  Identities=18%  Similarity=0.088  Sum_probs=93.9

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~------  138 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++    ++.||||||++.      
T Consensus        20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~t   99 (235)
T 3tif_A           20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT   99 (235)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred             eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCc
Confidence            455666655 59999999999999999999999999999 999999999876665443    346999999875      


Q ss_pred             --HHHHhcCCC----CCChHHHHHHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGCP----HAAIREDISINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~~----~~~~~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.++...    .....+..+++.++|+.++|.+. .++++.+|||||||||+|+
T Consensus       100 v~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA  157 (235)
T 3tif_A          100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA  157 (235)
T ss_dssp             HHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence              455443211    12234456778899999999875 4999999999999999974

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.93  E-value=1.6e-26  Score=202.67  Aligned_cols=120  Identities=21%  Similarity=0.143  Sum_probs=96.6

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--CchHHHhhhceeccchhH-------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~-------  138 (189)
                      .+..+++|.- +||+++|+||||||||||||+|+|+++|+ |+|.++|.++..  ......++.||||||++.       
T Consensus        18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV   97 (359)
T 3fvq_A           18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTV   97 (359)
T ss_dssp             EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCH
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCH
Confidence            3455666665 48999999999999999999999999999 999999998832  112234568999999865       


Q ss_pred             -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus        98 ~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValA  150 (359)
T 3fvq_A           98 YRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALA  150 (359)
T ss_dssp             HHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence             677776432 222345567899999999999999999999999999999974

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.93  E-value=2.9e-26  Score=193.06  Aligned_cols=120  Identities=13%  Similarity=0.059  Sum_probs=93.9

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC--CCchHHHhhhceeccchhH-------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI-------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~--~~~~~~~~~~iG~v~Q~~~-------  138 (189)
                      .+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.  .....++++.|+||||++.       
T Consensus        38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv  117 (263)
T 2olj_A           38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTV  117 (263)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCH
T ss_pred             EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCH
Confidence            3456667754 69999999999999999999999999999 99999999874  2233455678999999864       


Q ss_pred             -HHHHhcC--CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGG--CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++.  .......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus       118 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA  171 (263)
T 2olj_A          118 LNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA  171 (263)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence             4554431  11122233456788999999999889999999999999999974

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.93  E-value=5.2e-26  Score=190.33  Aligned_cols=119  Identities=18%  Similarity=0.129  Sum_probs=94.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccchhH--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q~~~--------~  139 (189)
                      +.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .+++.|+||||++.        +
T Consensus        22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e  101 (257)
T 1g6h_A           22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLE  101 (257)
T ss_dssp             EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHH
T ss_pred             eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHH
Confidence            455666654 69999999999999999999999999999 9999999998654433 34568999999864        5


Q ss_pred             HHHhcCCC-C-------------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCP-H-------------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~-~-------------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++... .             ....+...++.++|+.++|....++++.+|||||||||+|+
T Consensus       102 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA  165 (257)
T 1g6h_A          102 NLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG  165 (257)
T ss_dssp             HHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             HHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence            56554322 1             11223456788999999999889999999999999999974

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.93  E-value=4.3e-26  Score=193.42  Aligned_cols=120  Identities=13%  Similarity=0.008  Sum_probs=94.1

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC--CCchHHHhhhceeccchhH-------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI-------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~--~~~~~~~~~~iG~v~Q~~~-------  138 (189)
                      .+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.  ..+..++++.|+||||++.       
T Consensus        35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~l  114 (279)
T 2ihy_A           35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE  114 (279)
T ss_dssp             EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTS
T ss_pred             EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCC
Confidence            3456666654 69999999999999999999999999999 99999999886  4455566778999999863       


Q ss_pred             ---HHHHhcCCCCC-----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~~~-----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++.....     ...+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus       115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lA  173 (279)
T 2ihy_A          115 RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIA  173 (279)
T ss_dssp             BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence               34444422110     1123456788999999999889999999999999999874

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.92  E-value=3e-26  Score=202.33  Aligned_cols=117  Identities=15%  Similarity=-0.006  Sum_probs=95.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      +..+++|.- +||+++|+||||||||||||+|+|+++|+ |+|.++|.++...+..  .+.||||||++.        +|
T Consensus        18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~l~p~ltV~en   95 (381)
T 3rlf_A           18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAEN   95 (381)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCCCCTTSCHHHH
T ss_pred             EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCcCCCCCCHHHH
Confidence            456666665 59999999999999999999999999999 9999999999765543  367999999975        45


Q ss_pred             HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++.. ......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus        96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiA  145 (381)
T 3rlf_A           96 MSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG  145 (381)
T ss_dssp             HTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHH
Confidence            555422 1223345567899999999999999999999999999999974

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.92  E-value=3.7e-26  Score=187.71  Aligned_cols=119  Identities=17%  Similarity=0.061  Sum_probs=92.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---Hh-hhceeccchhH------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~-~~iG~v~Q~~~------  138 (189)
                      ..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+   ++ +.|+||||++.      
T Consensus        19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t   98 (224)
T 2pcj_A           19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELT   98 (224)
T ss_dssp             EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSC
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCC
Confidence            455666654 69999999999999999999999999999 99999999986554432   23 67999999864      


Q ss_pred             --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.++.. ......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus        99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la  152 (224)
T 2pcj_A           99 ALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIA  152 (224)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence              44443211 1112233456788999999999889999999999999999974

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.92  E-value=3.6e-26  Score=189.56  Aligned_cols=119  Identities=18%  Similarity=0.117  Sum_probs=93.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~  139 (189)
                      ..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++ ++.|+||||++.        +
T Consensus        21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e  100 (240)
T 1ji0_A           21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYE  100 (240)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHH
Confidence            455666654 69999999999999999999999999999 999999999865555444 346999999864        5


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcC-CchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lg-L~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++........+..+++.++++.++ |....++++.+|||||||||+|+
T Consensus       101 nl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lA  151 (240)
T 1ji0_A          101 NLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG  151 (240)
T ss_dssp             HHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHH
T ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHH
Confidence            666543222222234566788999995 88788999999999999999874

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.92  E-value=1e-25  Score=189.29  Aligned_cols=119  Identities=12%  Similarity=0.070  Sum_probs=92.7

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC----------Cch---HHHhhhceeccc
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----------KED---GEFLMRNGALPE  135 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~----------~~~---~~~~~~iG~v~Q  135 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..          ...   .++++.++||||
T Consensus        21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q  100 (262)
T 1b0u_A           21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ  100 (262)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECS
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEec
Confidence            455666654 59999999999999999999999999999 999999998841          222   234678999999


Q ss_pred             hhH--------HHHHhcC--CCCCChHHHHHHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723          136 ERI--------RAVETGG--CPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       136 ~~~--------~~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.        +++.++.  .......+..+++.++|+.++|... .++++.+|||||||||+|+
T Consensus       101 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA  165 (262)
T 1b0u_A          101 HFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA  165 (262)
T ss_dssp             SCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred             CcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence            853        4554431  1112223345678899999999988 8999999999999999974

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.92  E-value=9.4e-26  Score=197.76  Aligned_cols=117  Identities=15%  Similarity=0.043  Sum_probs=95.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.....  .++.||||||++.        ++
T Consensus        18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en   95 (359)
T 2yyz_A           18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP--KYREVGMVFQNYALYPHMTVFEN   95 (359)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTEEEECSSCCCCTTSCHHHH
T ss_pred             EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh--hhCcEEEEecCcccCCCCCHHHH
Confidence            456677765 59999999999999999999999999999 999999999865443  2468999999864        66


Q ss_pred             HHhcCCCC-CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~-~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++.... ....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus        96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalA  145 (359)
T 2yyz_A           96 IAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALA  145 (359)
T ss_dssp             HHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence            66654321 11223346789999999999899999999999999999974

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.92  E-value=8.2e-26  Score=189.54  Aligned_cols=119  Identities=15%  Similarity=0.086  Sum_probs=93.4

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      .+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ...++++.|+||||++.        +
T Consensus        29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~e  107 (256)
T 1vpl_A           29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIE  107 (256)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCCCTTSBHHH
T ss_pred             EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEEcCCCCCCCCCcHHH
Confidence            3556666665 59999999999999999999999999999 999999998854 34456678999999864        4


Q ss_pred             HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+... ......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus       108 nl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lA  158 (256)
T 1vpl_A          108 YLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA  158 (256)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence            4433211 0111222346788999999999889999999999999999874

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.92  E-value=1.5e-25  Score=197.29  Aligned_cols=117  Identities=12%  Similarity=-0.047  Sum_probs=93.3

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      +.++++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++......  ++.||||||++.        ++
T Consensus        26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~en  103 (372)
T 1v43_A           26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYEN  103 (372)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCHHHH
T ss_pred             EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHHH
Confidence            456677765 59999999999999999999999999999 9999999998654432  468999999875        56


Q ss_pred             HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus       104 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA  153 (372)
T 1v43_A          104 IAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA  153 (372)
T ss_dssp             HHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence            6665432 122234456789999999999899999999999999999974

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.92  E-value=6.6e-26  Score=198.24  Aligned_cols=119  Identities=15%  Similarity=0.028  Sum_probs=95.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc---hHHHhhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~---~~~~~~~iG~v~Q~~~-------  138 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....   ....++.||||||++.       
T Consensus        20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv   99 (353)
T 1oxx_K           20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA   99 (353)
T ss_dssp             EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred             eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence            456677764 58999999999999999999999999999 99999998874310   1223568999999864       


Q ss_pred             -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus       100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA  152 (353)
T 1oxx_K          100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA  152 (353)
T ss_dssp             HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence             666665432 222334467899999999999899999999999999999974

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.92  E-value=1.4e-25  Score=196.81  Aligned_cols=118  Identities=13%  Similarity=0.054  Sum_probs=94.9

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      .+..+++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++......  ++.||||||++.        +
T Consensus        17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e   94 (362)
T 2it1_A           17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYK   94 (362)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECTTCCCCTTSCHHH
T ss_pred             EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEecCcccCCCCCHHH
Confidence            3556677765 59999999999999999999999999999 9999999998654432  468999999864        5


Q ss_pred             HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++.. ......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus        95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA  145 (362)
T 2it1_A           95 NIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIA  145 (362)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHH
Confidence            5555421 1122233456789999999999889999999999999999974

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.92  E-value=6e-26  Score=189.15  Aligned_cols=115  Identities=14%  Similarity=0.135  Sum_probs=89.0

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      .+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.|+||||++.       ++
T Consensus        23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en  102 (247)
T 2ff7_A           23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN  102 (247)
T ss_dssp             EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHH
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHH
Confidence            3556666655 59999999999999999999999999999 999999999876666667788999999864       45


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i  189 (189)
                      +.++. ...    ..+++.++++.+++.+..++           ++.+|||||||||+|+
T Consensus       103 l~~~~-~~~----~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iA  157 (247)
T 2ff7_A          103 ISLAN-PGM----SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA  157 (247)
T ss_dssp             HTTTC-TTC----CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHH
T ss_pred             HhccC-CCC----CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHH
Confidence            54432 111    23456677777777655444           4589999999999974

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.91  E-value=2.1e-25  Score=186.37  Aligned_cols=115  Identities=12%  Similarity=0.085  Sum_probs=93.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH--------HHH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV  141 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i  141 (189)
                      ..++++|.- +|++++|+|||||||||||++|+|+++|+|+|.++|.++...+..++++.++||||++.        +++
T Consensus        15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l   94 (249)
T 2qi9_C           15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL   94 (249)
T ss_dssp             TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHH
Confidence            455666654 69999999999999999999999999888999999998865556667788999999864        455


Q ss_pred             HhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++.....    ..+++.++|+.++|....++++.+||||||||++|+
T Consensus        95 ~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA  138 (249)
T 2qi9_C           95 TLHQHDKT----RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA  138 (249)
T ss_dssp             HTTCSSTT----CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred             HHhhccCC----cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence            55432211    156788999999999889999999999999999874

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.91  E-value=2e-25  Score=187.75  Aligned_cols=116  Identities=11%  Similarity=0.026  Sum_probs=92.6

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R  139 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~  139 (189)
                      +.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..  . ++++.|+||||++.         +
T Consensus        22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~--~-~~~~~i~~v~q~~~~~~~~~tv~e   98 (266)
T 2yz2_A           22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG--Y-EIRRNIGIAFQYPEDQFFAERVFD   98 (266)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH--H-HHGGGEEEECSSGGGGCCCSSHHH
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch--H-HhhhhEEEEeccchhhcCCCcHHH
Confidence            456666654 59999999999999999999999999999 999999998742  2 56678999999852         5


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCc--hhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNL--FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~--~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++........+..+++.++|+.++|.  +..++++.+|||||||||+|+
T Consensus        99 nl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lA  150 (266)
T 2yz2_A           99 EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIA  150 (266)
T ss_dssp             HHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHH
Confidence            55554322111122356788999999998  889999999999999999974

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.91  E-value=1.2e-25  Score=196.44  Aligned_cols=115  Identities=16%  Similarity=0.102  Sum_probs=92.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      +.++++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++.....  .++.||||||++.        ++
T Consensus        15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en   92 (348)
T 3d31_A           15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNVKKN   92 (348)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCHHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCHHHH
Confidence            556677764 58999999999999999999999999999 999999999865433  3578999999864        45


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++.... ..... +++.++|+.++|....++++.+|||||||||+|+
T Consensus        93 l~~~~~~~-~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalA  139 (348)
T 3d31_A           93 LEFGMRMK-KIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALA  139 (348)
T ss_dssp             HHHHHHHH-CCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHc-CCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence            54432100 00112 6788999999999899999999999999999974

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.91  E-value=3.6e-25  Score=183.92  Aligned_cols=114  Identities=18%  Similarity=0.150  Sum_probs=90.1

Q ss_pred             cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHH
Q 029723           72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV  141 (189)
Q Consensus        72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i  141 (189)
                      ..+++|.- + ++++|+|||||||||||++|+|+++|+ |+|.++|.++....  ..++.|+||||++.        +++
T Consensus        15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~l~~~ltv~enl   91 (240)
T 2onk_A           15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLSVYRNI   91 (240)
T ss_dssp             EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred             EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCccCCCCcHHHHH
Confidence            44555543 5 999999999999999999999999999 99999999885422  23568999999864        555


Q ss_pred             HhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++... .......+++.++|+.++|....++++.+||||||||++|+
T Consensus        92 ~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA  138 (240)
T 2onk_A           92 AYGLRN-VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA  138 (240)
T ss_dssp             HTTCTT-SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHH
T ss_pred             HHHHHH-cCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHH
Confidence            554321 12223356788999999999889999999999999999874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.91  E-value=2.2e-25  Score=196.21  Aligned_cols=117  Identities=11%  Similarity=-0.063  Sum_probs=93.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC------CchHHHhhhceeccchhH----
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLMRNGALPEERI----  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~------~~~~~~~~~iG~v~Q~~~----  138 (189)
                      +..+++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++..      ...  .++.||||||++.    
T Consensus        18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~~r~ig~v~Q~~~l~~~   95 (372)
T 1g29_1           18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--KDRDIAMVFQSYALYPH   95 (372)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--GGSSEEEECSCCCCCTT
T ss_pred             EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--hHCCEEEEeCCCccCCC
Confidence            455666664 69999999999999999999999999999 999999988743      222  2468999999864    


Q ss_pred             ----HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ----RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ----~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                          +++.++.. ......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus        96 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA  151 (372)
T 1g29_1           96 MTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG  151 (372)
T ss_dssp             SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHH
Confidence                55555421 1122233456789999999999899999999999999999974

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.91  E-value=5e-25  Score=182.80  Aligned_cols=116  Identities=13%  Similarity=0.090  Sum_probs=88.7

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      ...++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.|+||||++.       ++
T Consensus        16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en   95 (243)
T 1mv5_A           16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIREN   95 (243)
T ss_dssp             CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHH
T ss_pred             ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHH
Confidence            3566677754 59999999999999999999999999998 999999998865544456678999999874       45


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhc-----------cccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKAD-----------LLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~-----------~~~~eLSGGqrq~~~~i  189 (189)
                      +.++.....    ..+++.++++.+++.+..+           +++.+||||||||++|+
T Consensus        96 l~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lA  151 (243)
T 1mv5_A           96 LTYGLEGDY----TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA  151 (243)
T ss_dssp             TTSCTTSCS----CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred             HhhhccCCC----CHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHH
Confidence            544321111    2345677888888765544           34679999999999974

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.91  E-value=5.3e-25  Score=185.83  Aligned_cols=120  Identities=13%  Similarity=0.111  Sum_probs=91.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      .+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+++.|+||||++.       ++
T Consensus        33 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en  112 (271)
T 2ixe_A           33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN  112 (271)
T ss_dssp             CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHH
T ss_pred             eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHH
Confidence            3566667754 59999999999999999999999999999 999999998865555566778999999864       56


Q ss_pred             HHhcCCCCCChHH-----HHHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIRE-----DISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~-----d~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++........+     ....+.++++.+  +|....++++.+|||||||||+|+
T Consensus       113 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lA  168 (271)
T 2ixe_A          113 IAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALA  168 (271)
T ss_dssp             HHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHH
T ss_pred             HhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHH
Confidence            6654322111011     112345677777  677778899999999999999974

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.91  E-value=6.7e-25  Score=188.58  Aligned_cols=116  Identities=15%  Similarity=0.186  Sum_probs=90.3

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      ..+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.|+||||++.       +
T Consensus        67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~e  146 (306)
T 3nh6_A           67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIAD  146 (306)
T ss_dssp             CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHH
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHH
Confidence            34566677765 59999999999999999999999999999 999999999988888888899999999975       6


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i  189 (189)
                      |+.++....     ...++.++++.+++.+.           ......+||||||||++|+
T Consensus       147 Ni~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA  202 (306)
T 3nh6_A          147 NIRYGRVTA-----GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA  202 (306)
T ss_dssp             HHHTTSTTC-----CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred             HHHhhcccC-----CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence            666654321     12344455555555433           3445579999999999974

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.91  E-value=1.9e-25  Score=182.92  Aligned_cols=112  Identities=20%  Similarity=0.207  Sum_probs=88.6

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      ....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.     .+++.++||||++.        +
T Consensus        23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q~~~~~~~~tv~e   97 (214)
T 1sgw_A           23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVED   97 (214)
T ss_dssp             EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSCCCCTTSBHHH
T ss_pred             eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeCCCcCCCCCCHHH
Confidence            4566666654 69999999999999999999999999999 99999998874     25678999999864        4


Q ss_pred             HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++... ..  ..+.+++.++|+.++|... ++++.+||||||||++|+
T Consensus        98 nl~~~~~~~~~--~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~la  145 (214)
T 1sgw_A           98 YLKAVASLYGV--KVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLA  145 (214)
T ss_dssp             HHHHHHHHTTC--CCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCC--chHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHH
Confidence            44332110 00  1124678889999999877 999999999999999874

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.90  E-value=4.5e-24  Score=188.92  Aligned_cols=114  Identities=13%  Similarity=0.135  Sum_probs=94.3

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      ..+..+++|.- +|++++|+|||||||||||++|+|+++ + |+|.++|.++...+..++++.|+||||++.       +
T Consensus        34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~e  112 (390)
T 3gd7_A           34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRK  112 (390)
T ss_dssp             CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHH
T ss_pred             eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHH
Confidence            34566677665 599999999999999999999999998 6 999999999987777778889999999975       3


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhcccccc-----------CChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-----------SGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~e-----------LSGGqrq~~~~i  189 (189)
                      ++.+.  ...    ..+++.++|+.++|....++++.+           |||||||||+|+
T Consensus       113 nl~~~--~~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA  167 (390)
T 3gd7_A          113 NLDPN--AAH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA  167 (390)
T ss_dssp             HHCTT--CCS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred             Hhhhc--ccc----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHH
Confidence            43221  111    345678899999999889999988           999999999974

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.89  E-value=3.2e-24  Score=178.80  Aligned_cols=119  Identities=15%  Similarity=0.010  Sum_probs=86.5

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhc--ccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH-------
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------  138 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gl--l~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~-------  138 (189)
                      +.++++|.- +|++++|+|||||||||||++|+|+  ++|+ |+|.++|.++...+..++ ++.++|+||++.       
T Consensus        18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   97 (250)
T 2d2e_A           18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTI   97 (250)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBH
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCH
Confidence            455666654 6999999999999999999999998  7888 999999999866555444 346899999864       


Q ss_pred             -HHHHhcCC----CCCChHHHHHHHHHHHhhcCC-chhhcccccc-CChHHHHhhhcC
Q 029723          139 -RAVETGGC----PHAAIREDISINLGPLEELSN-LFKADLLLCE-SGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~----~~~~~~~d~~~v~~~L~~lgL-~~~~~~~~~e-LSGGqrq~~~~i  189 (189)
                       +++.++..    ......+..+++.++|+.++| ....++++.+ |||||||||+|+
T Consensus        98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iA  155 (250)
T 2d2e_A           98 ANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEIL  155 (250)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHH
T ss_pred             HHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence             33333210    001122334678889999999 4678999999 999999999974

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.89  E-value=6.3e-24  Score=178.77  Aligned_cols=120  Identities=11%  Similarity=-0.044  Sum_probs=88.6

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc--cCC-ccEEEeecCCCCCchHHH-hhhceeccchhH------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~------  138 (189)
                      .+.++++|.- +|++++|+|||||||||||++|+|++  +|+ |+|.++|.++......++ ++.++||||++.      
T Consensus        34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~t  113 (267)
T 2zu0_C           34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVS  113 (267)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCB
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccccc
Confidence            3556666654 59999999999999999999999994  677 999999998865544444 346999999863      


Q ss_pred             --HHHHhcC--------CCCCChHHHHHHHHHHHhhcCCc-hhhccccc-cCChHHHHhhhcC
Q 029723          139 --RAVETGG--------CPHAAIREDISINLGPLEELSNL-FKADLLLC-ESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~--------~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~-eLSGGqrq~~~~i  189 (189)
                        +++.+..        .......+..+++.++|+.++|. ...++++. +|||||||||+|+
T Consensus       114 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA  176 (267)
T 2zu0_C          114 NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL  176 (267)
T ss_dssp             HHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence              2332211        01112223346788999999996 46788887 5999999999974

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.89  E-value=1e-23  Score=176.81  Aligned_cols=115  Identities=17%  Similarity=0.140  Sum_probs=87.6

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i  141 (189)
                      ....+++|.- +|++++|+|||||||||||++|+|+++|+|+|.++|.++...+..++++.|+||||++.       +++
T Consensus        34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl  113 (260)
T 2ghi_A           34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI  113 (260)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred             ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHH
Confidence            3556666655 59999999999999999999999999877999999998865555667788999999874       566


Q ss_pred             HhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723          142 ETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++... .    ..+++.++++.+++...           .++++.+|||||||||+|+
T Consensus       114 ~~~~~~-~----~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA  167 (260)
T 2ghi_A          114 LYGKLD-A----TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA  167 (260)
T ss_dssp             HTTCTT-C----CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred             hccCCC-C----CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence            554321 1    23345667777776543           2356789999999999974

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.88  E-value=1.4e-23  Score=175.53  Aligned_cols=106  Identities=21%  Similarity=0.207  Sum_probs=84.2

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      ..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.             +++.|+||||++.        ++
T Consensus        20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v~q~~~~~~~~tv~en   86 (253)
T 2nq2_C           20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFVPQFFSSPFAYSVLDI   86 (253)
T ss_dssp             EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEECSCCCCSSCCBHHHH
T ss_pred             EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEEcCCCccCCCCCHHHH
Confidence            455666654 69999999999999999999999999999 9997             2357999999864        55


Q ss_pred             HHhcCCCC-----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~-----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++....     .....+.+++.++|+.++|.+..++++.+||||||||++|+
T Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA  140 (253)
T 2nq2_C           87 VLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIA  140 (253)
T ss_dssp             HHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             HHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHH
Confidence            55543211     11133456788999999999889999999999999999974

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.88  E-value=7.2e-24  Score=178.43  Aligned_cols=112  Identities=21%  Similarity=0.108  Sum_probs=87.4

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhce-eccchhH------HHHH
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG-ALPEERI------RAVE  142 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG-~v~Q~~~------~~i~  142 (189)
                      ...+++|.-+|++++|+|||||||||||++|+|++ |+ |+|.++|.++...  .. ++.++ ||||++.      +++.
T Consensus        20 il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l~~tv~enl~   95 (263)
T 2pjz_A           20 SLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEIGVTVNDIVY   95 (263)
T ss_dssp             EEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCTTSBHHHHHH
T ss_pred             eEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCccCCcHHHHHH
Confidence            44556665559999999999999999999999999 98 9999999887432  22 56899 9999863      3333


Q ss_pred             hcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          143 TGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       143 ~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.....   ....+++.++|+.++|. ...++++.+||||||||++|+
T Consensus        96 ~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lA  140 (263)
T 2pjz_A           96 LYEELK---GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTS  140 (263)
T ss_dssp             HHHHHT---CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHH
T ss_pred             Hhhhhc---chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence            321000   11345688999999998 889999999999999999874

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.87  E-value=8.6e-23  Score=187.93  Aligned_cols=116  Identities=12%  Similarity=0.102  Sum_probs=92.1

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      ...++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||||++.       +|
T Consensus       357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en  436 (582)
T 3b5x_A          357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN  436 (582)
T ss_pred             cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHH
Confidence            4556666665 59999999999999999999999999998 999999999977777778889999999975       56


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccc-----------cccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLL-----------LCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~-----------~~eLSGGqrq~~~~i  189 (189)
                      +.++..+..    +.+++.++++.+++.+..+++           ..+||||||||++|+
T Consensus       437 i~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA  492 (582)
T 3b5x_A          437 IAYAAEGEY----TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA  492 (582)
T ss_pred             HhccCCCCC----CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence            655531111    345677788888776554443           479999999999974

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.87  E-value=9.2e-23  Score=187.73  Aligned_cols=116  Identities=12%  Similarity=0.056  Sum_probs=93.2

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      ....+++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||||++.       +|
T Consensus       357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en  436 (582)
T 3b60_A          357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN  436 (582)
T ss_dssp             CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHH
Confidence            4556666665 59999999999999999999999999999 999999999987777778889999999975       67


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i  189 (189)
                      +.++..+..    +.+++.++++.+++.+..++           ...+||||||||++|+
T Consensus       437 i~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA  492 (582)
T 3b60_A          437 IAYARTEEY----SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA  492 (582)
T ss_dssp             HHTTTTSCC----CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred             HhccCCCCC----CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence            766542222    34567788888887655444           4579999999999874

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.86  E-value=1.3e-22  Score=187.43  Aligned_cols=116  Identities=17%  Similarity=0.151  Sum_probs=91.8

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++.       +
T Consensus       368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  447 (598)
T 3qf4_B          368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKE  447 (598)
T ss_dssp             SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHH
T ss_pred             CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHH
Confidence            34566677665 49999999999999999999999999999 999999999988888888899999999975       6


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhcccc-----------ccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLL-----------CESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~-----------~eLSGGqrq~~~~i  189 (189)
                      |+.++... .    +.+++.++++.+++.+..+..+           .+||||||||++|+
T Consensus       448 ni~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iA  503 (598)
T 3qf4_B          448 NLKYGNPG-A----TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT  503 (598)
T ss_dssp             HHHSSSTT-C----CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHH
T ss_pred             HHhcCCCC-C----CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence            66665321 1    2234566777776655544444           68999999999874

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.85  E-value=2.8e-22  Score=184.49  Aligned_cols=116  Identities=18%  Similarity=0.135  Sum_probs=90.6

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++.       +
T Consensus       354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~e  433 (578)
T 4a82_A          354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE  433 (578)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred             CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHH
Confidence            34566777765 59999999999999999999999999999 999999999987778888899999999975       6


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i  189 (189)
                      |+.++... .    ..+++.++++.+++.+..           .....+||||||||++|+
T Consensus       434 ni~~~~~~-~----~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lA  489 (578)
T 4a82_A          434 NILLGRPT-A----TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA  489 (578)
T ss_dssp             HHGGGCSS-C----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred             HHhcCCCC-C----CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHH
Confidence            66665322 1    234455666666554433           344568999999999874

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.85  E-value=6.5e-22  Score=182.52  Aligned_cols=116  Identities=18%  Similarity=0.162  Sum_probs=89.3

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+...+++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++|+||+|++.       +
T Consensus       356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  435 (587)
T 3qf4_A          356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKE  435 (587)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHH
T ss_pred             CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHH
Confidence            34566676665 48999999999999999999999999999 999999999988888888899999999975       6


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhc-----------CCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEEL-----------SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~l-----------gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      |+.++... .    ..+++.++++..           +++...++...+||||||||++|+
T Consensus       436 ni~~~~~~-~----~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lA  491 (587)
T 3qf4_A          436 NLKWGRED-A----TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIA  491 (587)
T ss_dssp             HHTTTCSS-C----CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHH
T ss_pred             HHhccCCC-C----CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHH
Confidence            66655322 1    122333333333           334345677789999999999874

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.85  E-value=1.1e-21  Score=161.35  Aligned_cols=101  Identities=17%  Similarity=0.105  Sum_probs=72.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      ...++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|             .|+|+||++.       ++
T Consensus        22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~v~q~~~~~~~tv~en   88 (229)
T 2pze_A           22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKEN   88 (229)
T ss_dssp             CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEEECSSCCCCSBCHHHH
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEEEecCCcccCCCHHHH
Confidence            4556666654 59999999999999999999999999999 9999987             3899999864       55


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++...  .    ..++.++++.+++...           .++++.+||||||||++|+
T Consensus        89 l~~~~~~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lA  142 (229)
T 2pze_A           89 IIFGVSY--D----EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA  142 (229)
T ss_dssp             HHTTSCC--C----HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHH
T ss_pred             hhccCCc--C----hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence            5554211  1    1122334444444332           2334689999999999874

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.85  E-value=4.8e-22  Score=164.52  Aligned_cols=104  Identities=20%  Similarity=0.203  Sum_probs=73.4

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      ...++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|             .|+||||++.       ++
T Consensus        19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~~~~~tv~en   85 (237)
T 2cbz_A           19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVPQQAWIQNDSLREN   85 (237)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEECSSCCCCSEEHHHH
T ss_pred             ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEEcCCCcCCCcCHHHH
Confidence            3556666654 59999999999999999999999999998 9999987             3899999864       55


Q ss_pred             HHhcCCCCCChHHHHHHHHHH---HhhcCCc-----hhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGP---LEELSNL-----FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~---L~~lgL~-----~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++.....   +...++.++   ++.+++.     ...++++.+||||||||++|+
T Consensus        86 l~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lA  139 (237)
T 2cbz_A           86 ILFGCQLEE---PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA  139 (237)
T ss_dssp             HHTTSCCCT---THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHH
T ss_pred             hhCccccCH---HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence            655432111   111222222   2223321     124678999999999999974

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.81  E-value=1.6e-20  Score=186.73  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=94.7

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +..++++|.-+ |+.+||||++|||||||+++|+|++.|+ |+|.++|.|+.+.+..++|++|++|||+|.       +|
T Consensus      1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1172 (1321)
T 4f4c_A         1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN 1172 (1321)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred             ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHH
Confidence            46677777665 8999999999999999999999999998 999999999999999999999999999986       77


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchh-------hcccc----ccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFK-------ADLLL----CESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-------~~~~~----~eLSGGqrq~~~~i  189 (189)
                      +.+|..+.-   ...+++.++++..++.+.       .+..+    ..||||||||++|+
T Consensus      1173 I~~gld~~~---~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiA 1229 (1321)
T 4f4c_A         1173 IIYGLDPSS---VTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229 (1321)
T ss_dssp             HSSSSCTTT---SCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHH
T ss_pred             HhccCCCCC---CCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHH
Confidence            777653321   134567777777776543       23333    46999999999874

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.80  E-value=1.9e-20  Score=159.62  Aligned_cols=100  Identities=17%  Similarity=0.134  Sum_probs=70.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      ...++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|             .|+||||++.       ++
T Consensus        52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~en  118 (290)
T 2bbs_A           52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKEN  118 (290)
T ss_dssp             CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSSCCCCSSBHHHH
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCCCccCcccHHHH
Confidence            3556666665 59999999999999999999999999998 9999876             3899999864       44


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i  189 (189)
                      +. +. . ..    ..++.++++.+++....           ++.+.+||||||||++|+
T Consensus       119 l~-~~-~-~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA  171 (290)
T 2bbs_A          119 II-GV-S-YD----EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA  171 (290)
T ss_dssp             HH-TT-C-CC----HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred             hh-Cc-c-cc----hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence            44 22 1 11    12233445555554322           234579999999999874

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.80  E-value=6.5e-20  Score=181.95  Aligned_cols=117  Identities=17%  Similarity=0.157  Sum_probs=88.7

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +...+++|.-+ ||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++++||||++.       +|
T Consensus      1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 1126 (1284)
T 3g5u_A         1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126 (1284)
T ss_dssp             CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHH
T ss_pred             eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHH
Confidence            45677777665 8999999999999999999999999999 999999999988888888899999999984       56


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhc-----------cccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKAD-----------LLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~-----------~~~~eLSGGqrq~~~~i  189 (189)
                      +.++......   ..+.+.++++..++.+...           ....+||||||||++|+
T Consensus      1127 i~~~~~~~~~---~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A         1127 IAYGDNSRVV---SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183 (1284)
T ss_dssp             HTCCCSSCCC---CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHH
T ss_pred             HhccCCCCCC---CHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHH
Confidence            6555322111   2233444555544443322           23458999999999874

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.79  E-value=6.1e-20  Score=182.55  Aligned_cols=116  Identities=14%  Similarity=0.078  Sum_probs=93.6

Q ss_pred             CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+..++++|.- +|++++||||+|||||||+++|+|+++|+ |+|.++|.|+...+...+++.|+||+|+|.       +
T Consensus       431 ~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~e  510 (1321)
T 4f4c_A          431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEE  510 (1321)
T ss_dssp             SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHH
T ss_pred             CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhH
Confidence            35566777665 49999999999999999999999999999 999999999999999999999999999986       7


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhc-----------cccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFKAD-----------LLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~-----------~~~~eLSGGqrq~~~~i  189 (189)
                      |+.+|... .    +.+++.++++..++.+...           ..-..||||||||++|+
T Consensus       511 NI~~g~~~-~----~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiA  566 (1321)
T 4f4c_A          511 NISLGKEG-I----TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIA  566 (1321)
T ss_dssp             HHHTTCTT-C----CHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHH
T ss_pred             HHhhhccc-c----hHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHH
Confidence            88887532 2    3455666766666543322           23457999999999974

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.79  E-value=5.6e-20  Score=182.37  Aligned_cols=115  Identities=16%  Similarity=0.118  Sum_probs=89.0

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +...+++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|+|.       +|
T Consensus       404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN  483 (1284)
T 3g5u_A          404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN  483 (1284)
T ss_dssp             CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHH
T ss_pred             cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHH
Confidence            4666777765 48999999999999999999999999999 999999999988888888999999999985       67


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCc-----------hhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNL-----------FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~-----------~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++... ..    .+++.++++..++.           ........+||||||||++|+
T Consensus       484 i~~g~~~-~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiA  538 (1284)
T 3g5u_A          484 IRYGRED-VT----MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIA  538 (1284)
T ss_dssp             HHHHCSS-CC----HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHH
T ss_pred             HhcCCCC-CC----HHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHH
Confidence            7776432 21    22333444433332           223445668999999999974

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.76  E-value=4.5e-20  Score=171.22  Aligned_cols=95  Identities=18%  Similarity=0.147  Sum_probs=74.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHA  149 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~  149 (189)
                      .+||+++|+|||||||||||++|+|+++|+ |+|.+             .+.++|+||++.        +++.....   
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~---  443 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYELLSKIDS---  443 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHH---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCCCCcHHHHHHhhhc---
Confidence            479999999999999999999999999998 99875             136899999863        11111000   


Q ss_pred             ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .......++.++|+.++|....++++.+|||||||||+|+
T Consensus       444 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iA  483 (607)
T 3bk7_A          444 SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIA  483 (607)
T ss_dssp             HHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence            0001235678899999998889999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.76  E-value=2.1e-19  Score=164.61  Aligned_cols=97  Identities=18%  Similarity=0.142  Sum_probs=74.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHA  149 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~  149 (189)
                      .+||+++|+|||||||||||++|+|+++|+ |+|.+.+.            .++|++|+..        +++........
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  359 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------ILSYKPQRIFPNYDGTVQQYLENASKDAL  359 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CEEEECSSCCCCCSSBHHHHHHHHCSSTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------eeEeechhcccccCCCHHHHHHHhhhhcc
Confidence            479999999999999999999999999999 99986543            4667776532        33333211111


Q ss_pred             ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .  .....+.++|+.++|....++++.+|||||||||+|+
T Consensus       360 ~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iA  397 (538)
T 3ozx_A          360 S--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIA  397 (538)
T ss_dssp             C--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHH
T ss_pred             c--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHH
Confidence            1  1234577899999999889999999999999999974

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.76  E-value=4.7e-20  Score=168.83  Aligned_cols=95  Identities=19%  Similarity=0.160  Sum_probs=73.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHA  149 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~  149 (189)
                      .+||+++|+|||||||||||++|+|+++|+ |+|.+             ...|+||+|++.        +++......  
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~--  374 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADYEGTVYELLSKIDAS--  374 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHH--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCCCCCcHHHHHHhhhcc--
Confidence            479999999999999999999999999998 99875             135899999863        111110000  


Q ss_pred             ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       ...+.+++.++|+.+++....++++.+|||||||||+|+
T Consensus       375 -~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lA  413 (538)
T 1yqt_A          375 -KLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIA  413 (538)
T ss_dssp             -HHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence             001234677899999998888999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.76  E-value=2.3e-19  Score=164.23  Aligned_cols=116  Identities=17%  Similarity=0.104  Sum_probs=77.9

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccE---------EEeecCCCCCchHHH--hhhceeccchhH
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSL---------AAVTNDIFTKEDGEF--LMRNGALPEERI  138 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I---------~i~g~di~~~~~~~~--~~~iG~v~Q~~~  138 (189)
                      ...+++...+||+++|+|||||||||||++|+|+++|+ |++         .++|.++........  ...+++++|...
T Consensus        37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~  116 (538)
T 1yqt_A           37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVD  116 (538)
T ss_dssp             EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGG
T ss_pred             cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhh
Confidence            34445433689999999999999999999999999998 985         233333211000111  135778888643


Q ss_pred             HHHHhcCCCCCChH------HHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHAAIR------EDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~~~~------~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ......  .. ...      +...++.++|+.++|....++++.+|||||||||+|+
T Consensus       117 ~~~~~~--~~-~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iA  170 (538)
T 1yqt_A          117 LIPKAV--KG-KVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIA  170 (538)
T ss_dssp             GSGGGC--CS-BHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHH
T ss_pred             hcchhh--hc-cHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHH
Confidence            211110  00 111      1123578899999999889999999999999999974

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.74  E-value=6.9e-20  Score=169.99  Aligned_cols=116  Identities=22%  Similarity=0.168  Sum_probs=78.2

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccE---------EEeecCCCCCchH--HHhhhceeccchhH
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSL---------AAVTNDIFTKEDG--EFLMRNGALPEERI  138 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I---------~i~g~di~~~~~~--~~~~~iG~v~Q~~~  138 (189)
                      ...+++...+|++++|+|||||||||||++|+|+++|+ |++         .++|.++......  .....+++++|...
T Consensus       107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~  186 (607)
T 3bk7_A          107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVD  186 (607)
T ss_dssp             EEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGG
T ss_pred             eeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhh
Confidence            34445434689999999999999999999999999998 985         2334333111001  11235777777643


Q ss_pred             HHHHhcCCCCCChH------HHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHAAIR------EDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~~~~------~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ......  .. ...      +...++.++|+.|+|....++++.+|||||||||+|+
T Consensus       187 ~~~~~~--~~-tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIA  240 (607)
T 3bk7_A          187 LLPKAV--KG-KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIA  240 (607)
T ss_dssp             GGGGTC--CS-BHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHH
T ss_pred             hchhhc--cc-cHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHH
Confidence            211110  00 111      1124578899999999889999999999999999974

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.73  E-value=2.3e-19  Score=164.34  Aligned_cols=117  Identities=13%  Similarity=-0.041  Sum_probs=74.6

Q ss_pred             ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccE-----------EEeecCCCCCchHHHhh--hceeccchhH
Q 029723           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSL-----------AAVTNDIFTKEDGEFLM--RNGALPEERI  138 (189)
Q Consensus        73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I-----------~i~g~di~~~~~~~~~~--~iG~v~Q~~~  138 (189)
                      -++.+..+|++++|+||||||||||||+|+|+++|+ |+|           .+.+.++..........  .+...+|...
T Consensus        17 ~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~   96 (538)
T 3ozx_A           17 FGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVE   96 (538)
T ss_dssp             ECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTT
T ss_pred             cCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhh
Confidence            356777789999999999999999999999999998 988           34444442111111111  1222222211


Q ss_pred             HHHHhcCCC---CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCP---HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~---~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ....+....   .+.......++.++++.+++....++++.+|||||||||+|+
T Consensus        97 ~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA  150 (538)
T 3ozx_A           97 YASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVA  150 (538)
T ss_dssp             GGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred             hhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            000000000   000011123577899999999899999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.4e-18  Score=161.29  Aligned_cols=118  Identities=11%  Similarity=-0.018  Sum_probs=72.0

Q ss_pred             cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEE-----------EeecCCCCCchHHHhhhce--eccchh
Q 029723           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFLMRNG--ALPEER  137 (189)
Q Consensus        72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~-----------i~g~di~~~~~~~~~~~iG--~v~Q~~  137 (189)
                      ..++....+|++++|+|||||||||||++|+|+++|+ |+|.           +.|.++.......+.+.+.  +.+|..
T Consensus        94 l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  173 (608)
T 3j16_B           94 LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYV  173 (608)
T ss_dssp             EECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCT
T ss_pred             ecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhh
Confidence            3444456789999999999999999999999999998 9872           1111110000000011111  111111


Q ss_pred             HHHHHhcCCCCCCh--------HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          138 IRAVETGGCPHAAI--------REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       138 ~~~i~~g~~~~~~~--------~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ..............        .....++.++|+.|+|....++++.+|||||||||+|+
T Consensus       174 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iA  233 (608)
T 3j16_B          174 DNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIG  233 (608)
T ss_dssp             TTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHH
T ss_pred             hhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHH
Confidence            00000000000000        11236788999999999999999999999999999974

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.71  E-value=9.9e-18  Score=155.56  Aligned_cols=93  Identities=18%  Similarity=0.103  Sum_probs=70.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCCCh
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAAI  151 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~~~  151 (189)
                      ||+++|+|||||||||||++|+|+++|+ |+.      +.       ...++|++|+..        +++........  
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~--  442 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAPKFPGTVRQLFFKKIRGQF--  442 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCCCCCSBHHHHHHHHCSSTT--
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccccCCccHHHHHHHHhhccc--
Confidence            4889999999999999999999999998 862      21       135788888642        22222111111  


Q ss_pred             HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          152 REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       152 ~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                       .....+.++|+.++|....++++.+|||||||||+|+
T Consensus       443 -~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iA  479 (608)
T 3j16_B          443 -LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIV  479 (608)
T ss_dssp             -TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence             1234667889999999899999999999999999874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.65  E-value=1.3e-16  Score=154.45  Aligned_cols=46  Identities=26%  Similarity=0.317  Sum_probs=40.1

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g  115 (189)
                      ....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++
T Consensus       687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~  734 (986)
T 2iw3_A          687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE  734 (986)
T ss_dssp             CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred             eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence            3456666654 69999999999999999999999999999 9999875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.6e-18  Score=156.18  Aligned_cols=97  Identities=14%  Similarity=-0.003  Sum_probs=72.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-c-c-EEEeecCCCCCchHHHhhhceeccchhHH-----------HHHhcC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-S-LAAVTNDIFTKEDGEFLMRNGALPEERIR-----------AVETGG  145 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G-~-I~i~g~di~~~~~~~~~~~iG~v~Q~~~~-----------~i~~g~  145 (189)
                      +|++++|+||||||||||||+|+|+++|+ | + |.+++ +        .++.++|+||+...           ++ ++.
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~  206 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIFTVPGCISATPISDILDAQLPT-WGQ  206 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCeeeeccchhhcccccccchhhhh-ccc
Confidence            69999999999999999999999999998 9 8 99987 2        24679999998631           22 221


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       146 ~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ..... .....++.++++.+++....+  +.+||||||||++++
T Consensus       207 ~~~~~-~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalA  247 (460)
T 2npi_A          207 SLTSG-ATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQV  247 (460)
T ss_dssp             BCBSS-CCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHH
T ss_pred             ccccC-cchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHH
Confidence            11000 011234566788899986655  889999999999874

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.63  E-value=6.7e-18  Score=142.19  Aligned_cols=99  Identities=17%  Similarity=0.009  Sum_probs=56.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHH--------HHHhcCCCCCChH
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------AVETGGCPHAAIR  152 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~--------~i~~g~~~~~~~~  152 (189)
                      ..++|+|||||||||||++|+|+++|+ |+|.++|.++...   ..++.++|++|++..        ++.++....  ..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~--~~   77 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQIN--NE   77 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSB--CT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcc--cH
Confidence            468999999999999999999999998 9999999887321   234679999998652        222221111  01


Q ss_pred             HHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          153 EDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       153 ~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ...+.+.+.+.    ....+.++.+||+||+||++++
T Consensus        78 ~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~ia  110 (270)
T 3sop_A           78 NCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDT  110 (270)
T ss_dssp             TCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCC
T ss_pred             HHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhh
Confidence            11223333333    3456778899999999999874

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.61  E-value=1.3e-16  Score=148.88  Aligned_cols=116  Identities=17%  Similarity=0.116  Sum_probs=62.2

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHH---------------------HHHHhcccCC-ccEE-------EeecCCC
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALM---------------------LALCKFLRDK-YSLA-------AVTNDIF  119 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL---------------------~~L~Gll~p~-G~I~-------i~g~di~  119 (189)
                      .+..+++|.- +|++++|+|||||||||||                     +++.++++|+ +.|.       +++.++.
T Consensus        32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~  111 (670)
T 3ux8_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS  111 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred             cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence            3566777765 5999999999999999998                     8888888886 5443       3333321


Q ss_pred             CCchHHHhhhceeccchhHHH-------------------HHhcCCCCCCh------HH-----------HHHHHHHHHh
Q 029723          120 TKEDGEFLMRNGALPEERIRA-------------------VETGGCPHAAI------RE-----------DISINLGPLE  163 (189)
Q Consensus       120 ~~~~~~~~~~iG~v~Q~~~~~-------------------i~~g~~~~~~~------~~-----------d~~~v~~~L~  163 (189)
                          ...++.+++|+|.+...                   ..+.....+.+      ..           ......++|+
T Consensus       112 ----~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  187 (670)
T 3ux8_A          112 ----RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ  187 (670)
T ss_dssp             -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred             ----ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence                11234566666543210                   00111110000      00           0011224588


Q ss_pred             hcCCchh-hccccccCChHHHHhhhcC
Q 029723          164 ELSNLFK-ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       164 ~lgL~~~-~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++|... .++++.+|||||||||+|+
T Consensus       188 ~~gL~~~~~~~~~~~LSGGe~QRv~iA  214 (670)
T 3ux8_A          188 NVGLDYLTLSRSAGTLSGGEAQRIRLA  214 (670)
T ss_dssp             HTTCTTCCTTCBGGGSCHHHHHHHHHH
T ss_pred             HcCCchhhhcCCcccCCHHHHHHHHHH
Confidence            8999764 6899999999999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.60  E-value=4e-17  Score=132.63  Aligned_cols=108  Identities=12%  Similarity=-0.088  Sum_probs=68.2

Q ss_pred             cCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCch-HHHhhhceeccchhHHHHHhc-CCCCC-
Q 029723           74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETG-GCPHA-  149 (189)
Q Consensus        74 ~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~~~~i~~g-~~~~~-  149 (189)
                      +++|.- +|++++|+||||||||||+++|+|++ | |.|.+ +.++.+... ...++.++|+||++..+.... ....+ 
T Consensus        15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~   91 (218)
T 1z6g_A           15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLE   91 (218)
T ss_dssp             -------CCCCEEEECSTTSSHHHHHHHHHHHS-T-TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred             CCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhh
Confidence            444443 59999999999999999999999998 6 99999 777644322 123468999999876332211 00000 


Q ss_pred             -------ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          150 -------AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       150 -------~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                             .+......+.++++...+. ..   ..+|||||+||++|
T Consensus        92 ~~~~~~~~~g~~~~~i~~~l~~~~~~-il---~~~lsggq~qR~~i  133 (218)
T 1z6g_A           92 YDNYANNFYGTLKSEYDKAKEQNKIC-LF---EMNINGVKQLKKST  133 (218)
T ss_dssp             EEEETTEEEEEEHHHHHHHHHTTCEE-EE---EECHHHHHHHTTCS
T ss_pred             hhhcccccCCCcHHHHHHHHhCCCcE-EE---EecHHHHHHHHHHh
Confidence                   0011233466677665432 12   26899999999987

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.59  E-value=5.4e-18  Score=137.87  Aligned_cols=59  Identities=22%  Similarity=0.156  Sum_probs=41.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHH
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV  141 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i  141 (189)
                      .+|++++|+|||||||||||++|+|+ +|+ |+|...  ++. ....++++.++|+||++.+++
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~--~~~-~~~~~~~~~ig~v~q~~~enl   79 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI--ILT-RPAVEAGEKLGFLPGTLNEKI   79 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE--EEE-ECSCCTTCCCCSSCC------
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE--Eec-CCchhhhcceEEecCCHHHHH
Confidence            57999999999999999999999999 987 998542  121 111234568999999875444

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.58  E-value=2.1e-16  Score=135.74  Aligned_cols=93  Identities=11%  Similarity=-0.019  Sum_probs=65.4

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHHHhcCCCCC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVETGGCPHA  149 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i~~g~~~~~  149 (189)
                      ..+|++++|+||||||||||+++|+|+++|. |.                 +.+++|+|+..       +++.+......
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~  149 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGF  149 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTS
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCC
Confidence            4679999999999999999999999999986 53                 24666666643       22211110111


Q ss_pred             ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                      ....+...+.++|+.++ ....+.++.+||+||+||+++
T Consensus       150 ~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~  187 (312)
T 3aez_A          150 PESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPG  187 (312)
T ss_dssp             GGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEE
T ss_pred             ChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhh
Confidence            11224566778888887 444567888999999999875

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.53  E-value=4.2e-15  Score=138.64  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=28.0

Q ss_pred             HHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          156 SINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       156 ~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus       521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA  555 (670)
T 3ux8_A          521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLA  555 (670)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHH
Confidence            45667888899864 46889999999999999974

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.52  E-value=5.4e-15  Score=143.24  Aligned_cols=100  Identities=18%  Similarity=0.100  Sum_probs=70.0

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH---------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI---------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~~  140 (189)
                      ..++++|.- +|++++|+|||||||||||++|+|     |.|  .|.+..    .  ..+++|++|++.         ++
T Consensus       450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~----~--~~~~~~v~q~~~~~~~~ltv~e~  516 (986)
T 2iw3_A          450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQ----E--ECRTVYVEHDIDGTHSDTSVLDF  516 (986)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCT----T--TSCEEETTCCCCCCCTTSBHHHH
T ss_pred             eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCccc----c--ceeEEEEcccccccccCCcHHHH
Confidence            455566654 699999999999999999999995     333  222221    0  123678887631         33


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+ .  ....   ..++.++|+.++|. ...++++.+||||||||++|+
T Consensus       517 l~~-~--~~~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLA  560 (986)
T 2iw3_A          517 VFE-S--GVGT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALA  560 (986)
T ss_dssp             HHT-T--CSSC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHH
T ss_pred             HHH-h--hcCH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHH
Confidence            332 1  1111   46788999999995 578999999999999999874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.52  E-value=2.6e-15  Score=131.41  Aligned_cols=109  Identities=16%  Similarity=-0.038  Sum_probs=73.7

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhccc-CC-ccEEEe-ecCCCCCchHHHhhhceeccchhH-----HHHHhcC
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAV-TNDIFTKEDGEFLMRNGALPEERI-----RAVETGG  145 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~-p~-G~I~i~-g~di~~~~~~~~~~~iG~v~Q~~~-----~~i~~g~  145 (189)
                      .+.+..+|++++|+|||||||||||++|+|++. ++ |.|.+. |.+..+    ...+.+++++|...     ....++.
T Consensus       208 ~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~~~i~~v~q~~~l~dtpgv~e~~l  283 (358)
T 2rcn_A          208 PLEEALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTAARLYHFPHGGDVIDSPGVREFGL  283 (358)
T ss_dssp             HHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred             HHHHhcCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEEEEEEEECCCCEecCcccHHHhhh
Confidence            344556799999999999999999999999999 88 999887 654421    23456888888653     1112221


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       146 ~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                       ..+...+....+.++++.+++....+..+.+|| ||+|+++|
T Consensus       284 -~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~al  324 (358)
T 2rcn_A          284 -WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAV  324 (358)
T ss_dssp             -CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHH
T ss_pred             -cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHH
Confidence             122223344567788999999888999999999 99999986

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.50  E-value=2.3e-15  Score=128.33  Aligned_cols=109  Identities=12%  Similarity=-0.015  Sum_probs=72.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE---eecCCCCCchHHHhhhceeccchhH------------HHH--
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEERI------------RAV--  141 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i---~g~di~~~~~~~~~~~iG~v~Q~~~------------~~i--  141 (189)
                      .|++++|+|||||||||||++|+ +++|+ |+|.+   .|.++++.......+.+|||+|.|.            +++  
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~l~~  242 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPREVRN  242 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGGGGG
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHHHHH
Confidence            58999999999999999999999 99998 99999   8888754322111236899998862            122  


Q ss_pred             HhcC-------CCC-CChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          142 ETGG-------CPH-AAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       142 ~~g~-------~~~-~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .+..       ... ....+...++.++|+.++|.. ..++++..|||.++++++|+
T Consensus       243 ~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~  299 (302)
T 2yv5_A          243 YFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC  299 (302)
T ss_dssp             GCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHS
T ss_pred             HHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            1110       000 011123456889999999986 78999999999777777664

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.50  E-value=2.6e-16  Score=134.51  Aligned_cols=104  Identities=16%  Similarity=0.104  Sum_probs=70.9

Q ss_pred             cCcc-cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HHH--hhhceeccchhH-------
Q 029723           74 SRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF--LMRNGALPEERI-------  138 (189)
Q Consensus        74 ~~~f-~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~~--~~~iG~v~Q~~~-------  138 (189)
                      .++| ..+|++++|+||||||||||+++|+|+++|+ |+|.+.+.|+.....    ..+  ++.++|++|++.       
T Consensus        92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~  171 (302)
T 3b9q_A           92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV  171 (302)
T ss_dssp             SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHH
T ss_pred             ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHH
Confidence            3455 3469999999999999999999999999998 999999999865321    122  347999999753       


Q ss_pred             --HHHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          139 --RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       139 --~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                        +++.++....        ....+++.+++....++++.+||   +|++++
T Consensus       172 v~e~l~~~~~~~--------~d~~lldt~gl~~~~~~~~~eLS---kqr~~i  212 (302)
T 3b9q_A          172 LSKAVKRGKEEG--------YDVVLCDTSGRLHTNYSLMEELI---ACKKAV  212 (302)
T ss_dssp             HHHHHHHHHHTT--------CSEEEECCCCCSSCCHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHcC--------CcchHHhcCCCCcchhHHHHHHH---HHHHHH
Confidence              1121110000        00124566777666778889999   777654

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.48  E-value=2.1e-15  Score=123.95  Aligned_cols=103  Identities=11%  Similarity=0.062  Sum_probs=60.4

Q ss_pred             CcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH-------HHHH
Q 029723           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVE  142 (189)
Q Consensus        71 ~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i~  142 (189)
                      +.++++|.-+ |++++|+||||||||||+++|++++   |.+.++          .+++.++|++|+..       +++.
T Consensus        14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~~~~   80 (245)
T 2jeo_A           14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---GQNEVE----------QRQRKVVILSQDRFYKVLTAEQKAK   80 (245)
T ss_dssp             ---------CCSEEEEEECSTTSSHHHHHHHHHHHH---TGGGSC----------GGGCSEEEEEGGGGBCCCCHHHHHH
T ss_pred             eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---chhccc----------ccCCceEEEeCCcCccccCHhHhhh
Confidence            5566677654 8999999999999999999999977   444332          23457888888742       1222


Q ss_pred             hcCCC-CCC-h-HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          143 TGGCP-HAA-I-REDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       143 ~g~~~-~~~-~-~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                      +.... .+. . ..+...+.+.|+.+  ......++.+||+||+||+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~  127 (245)
T 2jeo_A           81 ALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE  127 (245)
T ss_dssp             HHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS
T ss_pred             hhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc
Confidence            21111 110 0 11234455566554  334567889999999999854

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.47  E-value=1.4e-15  Score=120.49  Aligned_cols=85  Identities=18%  Similarity=0.006  Sum_probs=53.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHHHHHH
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL  162 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v~~~L  162 (189)
                      +++|+|||||||||||++|+|++.    |.++|.+.........++.+||++|++.     +. ..+            +
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~~-----~~-~~~------------~   59 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITTE-----GK-KKI------------F   59 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEETT-----CC-EEE------------E
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecCc-----HH-HHH------------H
Confidence            689999999999999999999985    4455544321111134568999999751     10 000            1


Q ss_pred             hhcCCc--hhhccccccCChHHHHhhhcC
Q 029723          163 EELSNL--FKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       163 ~~lgL~--~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ..+...  ...++++.+||||||||++|+
T Consensus        60 ~~~~~~~~~~~~~~~~~lSgG~~qr~~la   88 (178)
T 1ye8_A           60 SSKFFTSKKLVGSYGVNVQYFEELAIPIL   88 (178)
T ss_dssp             EETTCCCSSEETTEEECHHHHHHHHHHHH
T ss_pred             HhhcCCccccccccccCcCHHHHHHHHHH
Confidence            111111  246778899999999998863

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.46  E-value=2.3e-16  Score=143.43  Aligned_cols=113  Identities=7%  Similarity=-0.087  Sum_probs=80.6

Q ss_pred             CCCcccCcc--cCCCcEEEEEcCCCchHHHHHHH--HHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHH--H
Q 029723           69 APPILSRNF--NERAFTVGIGGPVGTGKTALMLA--LCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA--V  141 (189)
Q Consensus        69 ~~~~~~~~f--~~~GeivgLiGpNGSGKTTLL~~--L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~--i  141 (189)
                      ...+.+++|  .++|++++|+||||||||||+++  ++|+++|+ |.|+|.+.+. .....+.++.+||++|++...  +
T Consensus        25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~~~l  103 (525)
T 1tf7_A           25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDEGKL  103 (525)
T ss_dssp             CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHTTSE
T ss_pred             chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhccCcE
Confidence            445666776  35799999999999999999999  68999977 9999999873 222334556899999987632  1


Q ss_pred             HhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                      .......      .....++|+.++|....++.+.+||+||+|++.|
T Consensus       104 ~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lil  144 (525)
T 1tf7_A          104 FILDASP------DPEGQEVVGGFDLSALIERINYAIQKYRARRVSI  144 (525)
T ss_dssp             EEEECCC------CSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             EEEecCc------ccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence            1110000      0112235566777777888999999999998865

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.46  E-value=3.9e-15  Score=126.58  Aligned_cols=101  Identities=13%  Similarity=-0.040  Sum_probs=64.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE---eecCCCCCchHHHhhhceeccchhHH----------------
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEERIR----------------  139 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i---~g~di~~~~~~~~~~~iG~v~Q~~~~----------------  139 (189)
                      .|++++|+|||||||||||++|+|+++|+ |+|.+   .|.+++........+.+|||+|.|..                
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l  247 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHY  247 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGG
T ss_pred             cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHH
Confidence            58999999999999999999999999998 99999   88887653321122468999998741                


Q ss_pred             HHHhcC-CCCC----ChHHHHHHHHHHHhhcCCc-hhhccccccCCh
Q 029723          140 AVETGG-CPHA----AIREDISINLGPLEELSNL-FKADLLLCESGG  180 (189)
Q Consensus       140 ~i~~g~-~~~~----~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSG  180 (189)
                      +..+.. .+.+    ...+...++.++|+.++|. ...++++.+||.
T Consensus       248 ~~~~~~~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          248 FKEFGDKQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             STTSSSCCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHhcccccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            000110 0000    0122345788999999995 678899999985

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.45  E-value=7.4e-15  Score=117.64  Aligned_cols=98  Identities=9%  Similarity=-0.060  Sum_probs=58.1

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCch-HHHhhhceeccchhHHHHHhcCCC---------
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETGGCP---------  147 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~~~~i~~g~~~---------  147 (189)
                      ..+|++++|+||||||||||+++|+|+++.   |.+.. ++.+... ...++.++|+||++..+..+....         
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~   92 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIH   92 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEG
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcc-cccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhc
Confidence            447999999999999999999999999863   33322 2211111 122467999999876432221110         


Q ss_pred             ------CCChHHHHHHHHHH------HhhcCCchhhccccccCC
Q 029723          148 ------HAAIREDISINLGP------LEELSNLFKADLLLCESG  179 (189)
Q Consensus       148 ------~~~~~~d~~~v~~~------L~~lgL~~~~~~~~~eLS  179 (189)
                            .....+..+++.+.      ++.+++....++++.+||
T Consensus        93 ~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS  136 (207)
T 1znw_A           93 GGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT  136 (207)
T ss_dssp             GGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE
T ss_pred             CchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE
Confidence                  01112233445444      555666656677777776

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.43  E-value=1.5e-15  Score=132.97  Aligned_cols=104  Identities=17%  Similarity=0.094  Sum_probs=71.4

Q ss_pred             cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HH--HhhhceeccchhH-------
Q 029723           74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GE--FLMRNGALPEERI-------  138 (189)
Q Consensus        74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~--~~~~iG~v~Q~~~-------  138 (189)
                      .++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+++.|+.....    ..  .++.++|++|++.       
T Consensus       149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t  228 (359)
T 2og2_A          149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV  228 (359)
T ss_dssp             SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence            34553 468999999999999999999999999998 999999999864321    11  2357999998753       


Q ss_pred             --HHHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          139 --RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       139 --~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                        +++.++.....    +    ..+++.+++....++++.+||   +|+++|
T Consensus       229 v~e~l~~~~~~~~----d----~~lldt~Gl~~~~~~~~~eLS---kqr~~i  269 (359)
T 2og2_A          229 LSKAVKRGKEEGY----D----VVLCDTSGRLHTNYSLMEELI---ACKKAV  269 (359)
T ss_dssp             HHHHHHHHHHTTC----S----EEEEECCCCSSCCHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHhCCC----H----HHHHHhcCCChhhhhHHHHHH---HHHHHH
Confidence              22221110000    0    124556777666778888999   677654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.41  E-value=7.2e-15  Score=130.81  Aligned_cols=95  Identities=12%  Similarity=0.027  Sum_probs=63.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHHHHH
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP  161 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v~~~  161 (189)
                      +++|+||||||||||||+|+|+++|+ |+|.+++.++.         +.++++|.+.. ..+.......+.....++.++
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t---------~~~~v~q~~~~-~~ltv~D~~g~~~~~~~~~~~  140 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT---------MERHPYKHPNI-PNVVFWDLPGIGSTNFPPDTY  140 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------------CCCEEEECSSC-TTEEEEECCCGGGSSCCHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc---------eeEEecccccc-CCeeehHhhcccchHHHHHHH
Confidence            99999999999999999999999998 99998886642         12778887421 011101111111122357788


Q ss_pred             HhhcCCchhhccccccCChH--HHHhhhcC
Q 029723          162 LEELSNLFKADLLLCESGGG--NLQTISFI  189 (189)
Q Consensus       162 L~~lgL~~~~~~~~~eLSGG--qrq~~~~i  189 (189)
                      |+.+++... +..+. ||+|  |+|+++|+
T Consensus       141 L~~~~L~~~-~~~~~-lS~G~~~kqrv~la  168 (413)
T 1tq4_A          141 LEKMKFYEY-DFFII-ISATRFKKNDIDIA  168 (413)
T ss_dssp             HHHTTGGGC-SEEEE-EESSCCCHHHHHHH
T ss_pred             HHHcCCCcc-CCeEE-eCCCCccHHHHHHH
Confidence            999988754 34444 9999  99999863

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.40  E-value=9.6e-15  Score=115.38  Aligned_cols=99  Identities=14%  Similarity=0.151  Sum_probs=58.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCCCCCc---hHHHh-hhce----eccchhHHHHHhcCCCCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKE---DGEFL-MRNG----ALPEERIRAVETGGCPHA  149 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di~~~~---~~~~~-~~iG----~v~Q~~~~~i~~g~~~~~  149 (189)
                      ++++|+|+||||||||+++|+++++|+    |.|.+++.++...+   ...++ +.++    +++|++..++  .  . .
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i--~--~-~   77 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI--R--R-V   77 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--E--E-C
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--e--c-C
Confidence            589999999999999999999999874    88999998865443   23344 4677    6777653211  0  0 0


Q ss_pred             ChHHHHHHHHHHHhh-c-CCchhhccccccCChHHHHhhhcC
Q 029723          150 AIREDISINLGPLEE-L-SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       150 ~~~~d~~~v~~~L~~-l-gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      . .+....+.++++. + +++   ......|||||+||++|+
T Consensus        78 ~-~~~~a~l~~~i~~~l~g~d---t~i~EglSgGq~qri~lA  115 (171)
T 2f1r_A           78 S-EEEGNDLDWIYERYLSDYD---LVITEGFSKAGKDRIVVV  115 (171)
T ss_dssp             C-HHHHTCHHHHHHHHTTTCS---EEEEESCGGGCCCEEEEC
T ss_pred             C-hhhhhCHHHHHHhhCCCCC---EEEECCcCCCCCcEEEEE
Confidence            0 0111134455554 4 232   122334999999999875

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.39  E-value=1.3e-13  Score=118.28  Aligned_cols=40  Identities=25%  Similarity=0.221  Sum_probs=33.5

Q ss_pred             cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEE
Q 029723           72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAA  113 (189)
Q Consensus        72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i  113 (189)
                      ..+++|.- +|++++|+|||||||||||++|+|++  .|+|.+
T Consensus       116 L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~  156 (305)
T 2v9p_A          116 LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLS  156 (305)
T ss_dssp             HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEEC
T ss_pred             hccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEE
Confidence            44455554 59999999999999999999999999  788854

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.37  E-value=3e-14  Score=126.93  Aligned_cols=109  Identities=16%  Similarity=0.085  Sum_probs=69.8

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC----chHHHhhhceecc---------chhH----
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALP---------EERI----  138 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~----~~~~~~~~iG~v~---------Q~~~----  138 (189)
                      +..+|++++|+|||||||||||++|+++++|+ |.|.+.+.++...    +..++.+.+++.|         |+|.    
T Consensus       163 ~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~v  242 (418)
T 1p9r_A          163 IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMV  242 (418)
T ss_dssp             HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEE
T ss_pred             HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEE
Confidence            45679999999999999999999999999987 9999999887421    1112233455544         5442    


Q ss_pred             ----------HHHHhcCCCCCC---h-HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhh
Q 029723          139 ----------RAVETGGCPHAA---I-REDISINLGPLEELSNLFKADLLLCESGGGNLQTIS  187 (189)
Q Consensus       139 ----------~~i~~g~~~~~~---~-~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~  187 (189)
                                .++......++.   . ..+...+...|..+++...  .++.+|||||+||++
T Consensus       243 gEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~--~~~~~LSgg~~QRLa  303 (418)
T 1p9r_A          243 GEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF--LISSSLLGVLAQRLV  303 (418)
T ss_dssp             SCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH--HHHHHEEEEEEEEEE
T ss_pred             cCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH--HHHHHHHHHHHHHhh
Confidence                      122221111100   0 0112233345777888754  378899999999943

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.37  E-value=1.2e-14  Score=124.46  Aligned_cols=59  Identities=17%  Similarity=0.187  Sum_probs=49.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch-H---H--HhhhceeccchhH
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-G---E--FLMRNGALPEERI  138 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~-~---~--~~~~iG~v~Q~~~  138 (189)
                      +|++++|+||||||||||+++|+++++|+ |+|.+.+.|+..... .   .  .++.++|++|++.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~  166 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG  166 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC
Confidence            68999999999999999999999999998 999999999865431 1   1  2347999999753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.37  E-value=8.9e-14  Score=133.10  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=29.3

Q ss_pred             HHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          156 SINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       156 ~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LA  742 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLA  742 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHH
Confidence            46778999999986 46899999999999999874

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.36  E-value=1.9e-13  Score=132.09  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=28.8

Q ss_pred             HHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          157 INLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       157 ~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus       824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LA  857 (972)
T 2r6f_A          824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLA  857 (972)
T ss_dssp             HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHH
Confidence            4567899999986 67899999999999999874

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.34  E-value=2.4e-13  Score=118.83  Aligned_cols=66  Identities=15%  Similarity=0.080  Sum_probs=48.1

Q ss_pred             CcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhccc--------------------------------------CC-cc
Q 029723           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR--------------------------------------DK-YS  110 (189)
Q Consensus        71 ~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~--------------------------------------p~-G~  110 (189)
                      ...+++|.-. | +++|+|+|||||||||++|++++.                                      +. +.
T Consensus        50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~  128 (415)
T 4aby_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA  128 (415)
T ss_dssp             TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred             ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence            3445555544 6 999999999999999999987764                                      33 67


Q ss_pred             EEEeecCCCCCchHHHhhh-ceeccchh
Q 029723          111 LAAVTNDIFTKEDGEFLMR-NGALPEER  137 (189)
Q Consensus       111 I~i~g~di~~~~~~~~~~~-iG~v~Q~~  137 (189)
                      +.++|.++......++.+. +.+++|..
T Consensus       129 i~ing~~~~~~~~~~~~~~~i~~~~q~~  156 (415)
T 4aby_A          129 ARLSGEVVSVRELQEWAQGRLTIHWQHS  156 (415)
T ss_dssp             EEETTEEECHHHHHHHHTTTEEEETTTC
T ss_pred             EEECCEECCHHHHHHHHhhceEEecCcc
Confidence            8888888754334444444 78888874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.30  E-value=3.2e-13  Score=120.82  Aligned_cols=65  Identities=12%  Similarity=0.092  Sum_probs=50.1

Q ss_pred             cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec---CCCCC-----chHHHhhhceeccch
Q 029723           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTK-----EDGEFLMRNGALPEE  136 (189)
Q Consensus        72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~---di~~~-----~~~~~~~~iG~v~Q~  136 (189)
                      .+++.-..+|++++|+|||||||||||++|+|+++|+ |.|.++|.   ++...     ....+++.++|++|.
T Consensus       148 ld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~  221 (438)
T 2dpy_A          148 INALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA  221 (438)
T ss_dssp             HHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred             EeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence            3444333469999999999999999999999999999 99999987   44211     123356679999995

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.28  E-value=6.9e-13  Score=105.53  Aligned_cols=93  Identities=19%  Similarity=0.225  Sum_probs=56.2

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHH
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISI  157 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~  157 (189)
                      ..+|++++|+||||||||||+++|++++.|  .|.+...+..-.....    ..     ..++..+...  .....+..+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--~i~~v~~d~~~~~~~~----~~-----~~~~~~~~~~--~~~~~~~~~   69 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE--RVALLPMDHYYKDLGH----LP-----LEERLRVNYD--HPDAFDLAL   69 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG--GEEEEEGGGCBCCCTT----SC-----HHHHHHSCTT--SGGGBCHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--CeEEEecCccccCccc----cc-----HHHhcCCCCC--ChhhhhHHH
Confidence            457899999999999999999999999876  3444433321100000    00     0011111110  011123456


Q ss_pred             HHHHHhhcCCchhhccccccCChHHH
Q 029723          158 NLGPLEELSNLFKADLLLCESGGGNL  183 (189)
Q Consensus       158 v~~~L~~lgL~~~~~~~~~eLSGGqr  183 (189)
                      +.++++.+++.+..+.++.++|+|++
T Consensus        70 ~~~~l~~~~~~~~~~~~~~~~s~g~~   95 (211)
T 3asz_A           70 YLEHAQALLRGLPVEMPVYDFRAYTR   95 (211)
T ss_dssp             HHHHHHHHHTTCCEEECCEETTTTEE
T ss_pred             HHHHHHHHHcCCCcCCCcccCcccCC
Confidence            77788888877677778899999975

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.27  E-value=1.8e-12  Score=112.83  Aligned_cols=47  Identities=21%  Similarity=0.196  Sum_probs=39.3

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      +.+.+.-..+|++++|+|||||||||||++|+|+++|+ |.|.+.|.+
T Consensus        61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~  108 (347)
T 2obl_A           61 AIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER  108 (347)
T ss_dssp             HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred             EEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence            33444333479999999999999999999999999999 999888864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.23  E-value=6.2e-13  Score=114.13  Aligned_cols=104  Identities=12%  Similarity=-0.014  Sum_probs=57.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE---eecCCCCCchHHHhhhceeccchhH-----------HHHH--
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEERI-----------RAVE--  142 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i---~g~di~~~~~~~~~~~iG~v~Q~~~-----------~~i~--  142 (189)
                      +|++++|+|||||||||||++|+|+++++ |+|.+   .|..+++.. ..+...++||+|.|.           +++.  
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~e~l~~~  250 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEEEELGYT  250 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCHHHHGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCHHHHHHH
Confidence            68999999999999999999999999998 99998   777765422 111223789988763           2221  


Q ss_pred             hc------CCCCC----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHH
Q 029723          143 TG------GCPHA----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQ  184 (189)
Q Consensus       143 ~g------~~~~~----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq  184 (189)
                      +.      ..|.+    ...+...++.++|+.++|.......+..|+.|++|
T Consensus       251 f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~  302 (307)
T 1t9h_A          251 FPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKD  302 (307)
T ss_dssp             SHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence            10      00110    01122346889999999986555555666667776

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.21  E-value=5.6e-12  Score=102.88  Aligned_cols=57  Identities=18%  Similarity=0.091  Sum_probs=46.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCCCCCchHHHhhhceeccchhHH
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR  139 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~  139 (189)
                      ++|++++|+||||||||||+++|+|+++|  . |.|.+.+.+...    ..+..++|+||++..
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~   73 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDE   73 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHH
Confidence            36999999999999999999999999986  4 888888876532    124579999998763

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.21  E-value=3.8e-12  Score=99.14  Aligned_cols=60  Identities=18%  Similarity=0.239  Sum_probs=45.4

Q ss_pred             ccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723           73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (189)
Q Consensus        73 ~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~  138 (189)
                      +.++|. .+|++++|+||||||||||+++|+|++ |+ |+|.+.+.++..  ..+..   .+++|.+.
T Consensus        24 ~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~--~~~~~---~~~~q~~~   85 (158)
T 1htw_A           24 ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE--EYNIA---GKMIYHFD   85 (158)
T ss_dssp             HHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE--EEEET---TEEEEEEE
T ss_pred             hccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee--eccCC---Ccceeccc
Confidence            344444 468999999999999999999999999 87 999999988742  11111   26778653

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.20  E-value=7.7e-12  Score=98.52  Aligned_cols=56  Identities=21%  Similarity=0.142  Sum_probs=43.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~  138 (189)
                      +|++++|+||||||||||+++|+++++   .+.+.+.++........+..++|+||++.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDET   61 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHH
Confidence            699999999999999999999999974   46666655543322233557899999876

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.19  E-value=2.1e-13  Score=106.62  Aligned_cols=56  Identities=16%  Similarity=0.174  Sum_probs=41.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~  138 (189)
                      .+|++++|+||||||||||+++|+++  ++ |.|.+++.++....  ...+.++|++|...
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~   63 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ   63 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh
Confidence            46899999999999999999999998  55 88998876542111  11234678888643

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.19  E-value=4.3e-12  Score=108.39  Aligned_cols=30  Identities=27%  Similarity=0.418  Sum_probs=24.3

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.|. +| +++|+|+|||||||||.+|+.++
T Consensus        19 ~l~~~-~g-~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           19 LIGFS-DR-VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             EEECC-SS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             EEecC-CC-cEEEECCCCCcHHHHHHHHHHHh
Confidence            34443 35 99999999999999999999654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.17  E-value=1.4e-11  Score=111.86  Aligned_cols=65  Identities=17%  Similarity=0.165  Sum_probs=51.8

Q ss_pred             ccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc------hHHHhhhceeccchh
Q 029723           73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE------DGEFLMRNGALPEER  137 (189)
Q Consensus        73 ~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~------~~~~~~~iG~v~Q~~  137 (189)
                      .+++|. .+|++++|+|+|||||||||++|+|+++++ |+|.+++.|+....      ....++.|+|++|..
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~  356 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT  356 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCST
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEeccc
Confidence            345564 358999999999999999999999999988 99999988875431      111356799999974

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.17  E-value=9.6e-12  Score=96.93  Aligned_cols=88  Identities=18%  Similarity=0.152  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHHH
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL  159 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v~  159 (189)
                      +|++++|+||||||||||++++.+     |...+. .+       .   ..++++|++......+    ..+ +......
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~-----~~~~~~-~d-------~---~~g~~~~~~~~~~~~~----~~~-~~~~~~~   66 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFK-----PTEVIS-SD-------F---CRGLMSDDENDQTVTG----AAF-DVLHYIV   66 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSC-----GGGEEE-HH-------H---HHHHHCSSTTCGGGHH----HHH-HHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHcc-----CCeEEc-cH-------H---HHHHhcCcccchhhHH----HHH-HHHHHHH
Confidence            699999999999999999998542     222221 11       1   1267777653111000    000 1111122


Q ss_pred             HHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          160 GPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       160 ~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ..+...+.....+ ....+|+||||+++|+
T Consensus        67 ~~~~~~g~~~~~~-~~~~~s~g~~qrv~iA   95 (171)
T 4gp7_A           67 SKRLQLGKLTVVD-ATNVQESARKPLIEMA   95 (171)
T ss_dssp             HHHHHTTCCEEEE-SCCCSHHHHHHHHHHH
T ss_pred             HHHHhCCCeEEEE-CCCCCHHHHHHHHHHH
Confidence            2223345543333 3346699999999874

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.16  E-value=1.1e-12  Score=112.28  Aligned_cols=40  Identities=18%  Similarity=0.155  Sum_probs=35.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc--------cCC-ccEEEeecCCCCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL--------RDK-YSLAAVTNDIFTK  121 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll--------~p~-G~I~i~g~di~~~  121 (189)
                      ++++|+|+|||||||||++|+++.        .++ |+|.|++.++...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~   53 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDR   53 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTT
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCC
Confidence            589999999999999999999986        678 9999999887543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.14  E-value=9.1e-12  Score=107.62  Aligned_cols=66  Identities=26%  Similarity=0.190  Sum_probs=52.6

Q ss_pred             ccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HHHhhhceeccchhH
Q 029723           73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERI  138 (189)
Q Consensus        73 ~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~~~~~iG~v~Q~~~  138 (189)
                      .+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.|.+.++.+...    ...++++++++|++.
T Consensus        46 ~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~  117 (337)
T 2qm8_A           46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN  117 (337)
T ss_dssp             HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred             HhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence            455554 458999999999999999999999999998 999999998854221    123567999999754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.14  E-value=2.5e-12  Score=108.00  Aligned_cols=108  Identities=18%  Similarity=0.091  Sum_probs=67.5

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHH----HHhcCCCCC
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRA----VETGGCPHA  149 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~----i~~g~~~~~  149 (189)
                      ++.+..+.. ++|+||||||||||+++|++.+.+ +.|.+++.++......+..+.++++||.....    +.+-....+
T Consensus        38 ~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~  115 (274)
T 2x8a_A           38 ALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDAL  115 (274)
T ss_dssp             HTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTT
T ss_pred             HcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhh
Confidence            344444322 899999999999999999998866 68999998886555556667889999875211    000000000


Q ss_pred             ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .........    .  .+....++++.+|||||+|++.|+
T Consensus       116 ~~~r~~~~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~  149 (274)
T 2x8a_A          116 CPRRSDRET----G--ASVRVVNQLLTEMDGLEARQQVFI  149 (274)
T ss_dssp             CC---------------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred             hcccCCCcc----h--HHHHHHHHHHHhhhcccccCCEEE
Confidence            000010000    1  123356778899999999987764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.14  E-value=5.4e-12  Score=100.89  Aligned_cols=53  Identities=23%  Similarity=0.062  Sum_probs=44.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      |++++|+||||||||||+++|+|+++ + | |.+++.++...  ...++.+||++|+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~   54 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL   54 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec
Confidence            68999999999999999999999999 7 9 99999877432  23567899999974

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.11  E-value=1e-11  Score=107.10  Aligned_cols=55  Identities=13%  Similarity=0.144  Sum_probs=43.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q  135 (189)
                      .+|++++|+|||||||||||++|+|+++|+ |.|.+++.+.....  ..++.++++++
T Consensus       169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--~~~~~i~~~~g  224 (330)
T 2pt7_A          169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--HHKNYTQLFFG  224 (330)
T ss_dssp             HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--SCSSEEEEECB
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--cchhEEEEEeC
Confidence            358999999999999999999999999998 99999987532221  23446777753

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.11  E-value=4.9e-11  Score=103.01  Aligned_cols=59  Identities=22%  Similarity=0.379  Sum_probs=48.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH----Hhhh--ceeccchh
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMR--NGALPEER  137 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~----~~~~--iG~v~Q~~  137 (189)
                      .+|++++|+||||||||||+++|+++++|+ |+|.+.+.|+......+    +++.  +.+++|..
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~  192 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY  192 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc
Confidence            469999999999999999999999999998 99999999987655433    2333  44777754

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.10  E-value=2.4e-11  Score=96.88  Aligned_cols=41  Identities=22%  Similarity=0.206  Sum_probs=33.1

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccC-------C-ccEEEeecCC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRD-------K-YSLAAVTNDI  118 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p-------~-G~I~i~g~di  118 (189)
                      .++|++++|+||||||||||+++|++++.+       . +.+++++.+.
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~   70 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT   70 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence            457999999999999999999999996554       3 3667776653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.10  E-value=4.3e-11  Score=115.46  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=28.5

Q ss_pred             HHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          156 SINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       156 ~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LA  817 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLA  817 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHH
Confidence            45678899999975 46789999999999999874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.09  E-value=9.5e-12  Score=99.50  Aligned_cols=41  Identities=20%  Similarity=0.208  Sum_probs=34.5

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccC---C-ccEEEeecCC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRD---K-YSLAAVTNDI  118 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p---~-G~I~i~g~di  118 (189)
                      ..+|++++|+||||||||||+++|+++++|   + |.|.+++..+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence            457999999999999999999999999985   4 6666666554

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.07  E-value=4.8e-12  Score=104.21  Aligned_cols=61  Identities=16%  Similarity=0.136  Sum_probs=40.6

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH--------HHhhhceeccch
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG--------EFLMRNGALPEE  136 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~--------~~~~~iG~v~Q~  136 (189)
                      +++|..  ++++|+|||||||||||++|+|++.|+ |.|.+++.++....+.        .++..++|++|.
T Consensus        22 ~~~~~~--~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           22 TFDLDE--LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             EECHHH--HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             EEEEcC--cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            456654  789999999999999999999999998 9999999887332211        124578999975

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.05  E-value=2.4e-12  Score=109.53  Aligned_cols=100  Identities=16%  Similarity=0.034  Sum_probs=44.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc-ccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCCh---HHHHHH
Q 029723           83 TVGIGGPVGTGKTALMLALCKF-LRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI---REDISI  157 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl-l~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~---~~d~~~  157 (189)
                      .++|+|+|||||||||++|+|. +.|+ | |.+.+.++..  ... .+.+++++|.....+.+........   ....++
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~--t~~-~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER--TVQ-IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC--cce-EeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            3599999999999999999997 7777 8 8887776632  111 3467888886531111110000000   000011


Q ss_pred             HHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          158 NLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       158 v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                      ...+++.  +....+.++.++|+||||++.+
T Consensus        96 ~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~  124 (301)
T 2qnr_A           96 FKTIISY--IDEQFERYLHDESGLNRRHIID  124 (301)
T ss_dssp             CTTHHHH--HHHHHHHHHHHHTSSCCTTCCC
T ss_pred             HHHHHHH--HHHHHHHHHHHhCHHhhhhhhh
Confidence            1111221  2234568899999999999875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.04  E-value=4.5e-11  Score=108.25  Aligned_cols=50  Identities=18%  Similarity=0.230  Sum_probs=42.1

Q ss_pred             cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC
Q 029723           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK  121 (189)
Q Consensus        72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~  121 (189)
                      ..+++|.-+.++++|+|||||||||||++|+|+++|+ |+|.++|.++...
T Consensus        20 l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~   70 (483)
T 3euj_A           20 FFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGS   70 (483)
T ss_dssp             EEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSC
T ss_pred             ccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccC
Confidence            4455554433999999999999999999999999998 9999999988643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.04  E-value=2.1e-10  Score=90.93  Aligned_cols=56  Identities=18%  Similarity=0.119  Sum_probs=43.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~  138 (189)
                      .+|++++|+|+||||||||+++|++.+   |.+.+++.++.. ........+++++|+..
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~-~~~~~~~~~g~~~~~~~   82 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHS-PENIATMQRGIPLTDED   82 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSC-HHHHHHHHTTCCCCHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEccccccc-HHHHHHHhcCCCCCCcc
Confidence            468999999999999999999999987   789999887742 11123346788888754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.03  E-value=9.4e-11  Score=102.06  Aligned_cols=57  Identities=18%  Similarity=0.058  Sum_probs=43.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceecc-chh
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP-EER  137 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~-Q~~  137 (189)
                      .+|++++|+|||||||||||++|+++++|+ |.|.+.+..-  ......+..+++++ |++
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e--~~~~~~~~~v~~v~~q~~  231 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE--LFLPDHPNHVHLFYPSEA  231 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC--CCCTTCSSEEEEECC---
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc--cCccccCCEEEEeecCcc
Confidence            368999999999999999999999999998 9999987432  22222445788998 653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.03  E-value=6.3e-12  Score=107.81  Aligned_cols=106  Identities=11%  Similarity=-0.091  Sum_probs=58.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc----cCC-ccEEEeecCCCCCchHHHhhhceeccchhH------HHHHhcCCC-CC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL----RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------RAVETGGCP-HA  149 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll----~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------~~i~~g~~~-~~  149 (189)
                      +.++|+||||+|||||+++|++.+    .+. |.+.+.+.++...........|.|+.|...      +++...... ..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~  131 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQI  131 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhccc
Confidence            789999999999999999999998    444 655544443311000001245778877543      111111000 00


Q ss_pred             C----hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          150 A----IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       150 ~----~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                      .    .......+...++.+.|.. ....+..||+|++||+.+
T Consensus       132 ~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l  173 (334)
T 1in4_A          132 DIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGI  173 (334)
T ss_dssp             CC---------------CCCEEEE-EESCGGGSCHHHHTTCSE
T ss_pred             ceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCc
Confidence            0    0112234445566666653 667788999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.02  E-value=2e-10  Score=104.20  Aligned_cols=84  Identities=15%  Similarity=0.041  Sum_probs=55.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCcc--EEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHH
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYS--LAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS  156 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~--I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~  156 (189)
                      .+|++++|+|+||||||||+++|++++.+.|.  +++...+.    ...+...+          ..++    +.      
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~----~~~l~~~~----------~~~g----~~------  334 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES----RAQLLRNA----------YSWG----MD------  334 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC----HHHHHHHH----------HTTS----CC------
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC----HHHHHHHH----------HHcC----CC------
Confidence            47999999999999999999999999988764  34443321    11111110          0111    11      


Q ss_pred             HHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723          157 INLGPLEELSNLFKADLLLCESGGGNLQTISF  188 (189)
Q Consensus       157 ~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~  188 (189)
                       +.+ +..+++....+..+.+||+||+|++++
T Consensus       335 -~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~  364 (525)
T 1tf7_A          335 -FEE-MERQNLLKIVCAYPESAGLEDHLQIIK  364 (525)
T ss_dssp             -HHH-HHHTTSEEECCCCGGGSCHHHHHHHHH
T ss_pred             -HHH-HHhCCCEEEEEeccccCCHHHHHHHHH
Confidence             111 234566656778899999999999876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.98  E-value=2.4e-10  Score=97.14  Aligned_cols=53  Identities=17%  Similarity=0.251  Sum_probs=42.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc--CC-ccEEE---eecCCCCCchHHHhhhceeccch
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAA---VTNDIFTKEDGEFLMRNGALPEE  136 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~--p~-G~I~i---~g~di~~~~~~~~~~~iG~v~Q~  136 (189)
                      .+|++++|+|+||||||||+++|++++.  |+ |+|.+   ++...   .. ..++.++++ |.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~---~~-~~~~~~~~v-q~  136 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH---PN-QVLKERGLM-KK  136 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC---CH-HHHHHHTCT-TC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC---cH-HHHHhCCEe-ec
Confidence            5689999999999999999999999988  87 99999   55543   22 334567777 54

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.96  E-value=1.9e-10  Score=96.07  Aligned_cols=48  Identities=17%  Similarity=0.432  Sum_probs=41.2

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccC--CccEEEeecCCC
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDIF  119 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p--~G~I~i~g~di~  119 (189)
                      ...+++ ..+|++++|+|||||||||||++|+|+++|  .|+|.+++.++.
T Consensus        16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~   65 (261)
T 2eyu_A           16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE   65 (261)
T ss_dssp             HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred             HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence            344555 568999999999999999999999999987  399999998774

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.96  E-value=7.5e-11  Score=92.83  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=25.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcc-----cCC-ccEEE
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFL-----RDK-YSLAA  113 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll-----~p~-G~I~i  113 (189)
                      .+|++++|+|+||||||||++.|+|..     .|+ |.+.+
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~   64 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL   64 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence            468999999999999999999999988     666 76543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.95  E-value=6.2e-10  Score=92.66  Aligned_cols=95  Identities=16%  Similarity=0.027  Sum_probs=59.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccch-hHHHH-----HhcCCCCCChH
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE-RIRAV-----ETGGCPHAAIR  152 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~-~~~~i-----~~g~~~~~~~~  152 (189)
                      .+|++++|+||||||||||++.|++.+. .|.+. .|.++..      ...+.|+..+ +...+     .++.  .+   
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~-~g~~~~~------~~~v~~~~~e~~~~~~~~r~~~~g~--~~---   94 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDL-LEVGELP------TGPVIYLPAEDPPTAIHHRLHALGA--HL---   94 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCT-TCCCCCC------CCCEEEEESSSCHHHHHHHHHHHHT--TS---
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCc-CCCccCC------CccEEEEECCCCHHHHHHHHHHHHh--hc---
Confidence            4899999999999999999999998665 34432 2332210      1234444332 11111     1111  11   


Q ss_pred             HHHHHHHHHHhhcCCchhhccccccCChHHHHhhh
Q 029723          153 EDISINLGPLEELSNLFKADLLLCESGGGNLQTIS  187 (189)
Q Consensus       153 ~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~  187 (189)
                       ....+.++++.+.+....++.+..||+||+|++.
T Consensus        95 -~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~  128 (279)
T 1nlf_A           95 -SAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLK  128 (279)
T ss_dssp             -CHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHH
T ss_pred             -ChhhhhhccCceEEeecCCCCcccCCHHHHHHHH
Confidence             1233556677887776677889999999988763

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.95  E-value=5.2e-10  Score=93.63  Aligned_cols=61  Identities=10%  Similarity=-0.022  Sum_probs=44.8

Q ss_pred             CcccCcc-cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-c-cEEEeecCCCCCchHHHhhhceecc
Q 029723           71 PILSRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALP  134 (189)
Q Consensus        71 ~~~~~~f-~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G-~I~i~g~di~~~~~~~~~~~iG~v~  134 (189)
                      ..+++.+ ..+|++++|+||||||||||+++|++++.++ | .|.+.+.+.   ...++.+++.+++
T Consensus        24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~   87 (296)
T 1cr0_A           24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLH   87 (296)
T ss_dssp             THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHH
Confidence            3444444 3469999999999999999999999999887 7 788777654   2334444444443

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.93  E-value=3.3e-10  Score=91.61  Aligned_cols=27  Identities=26%  Similarity=0.307  Sum_probs=18.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHH-hccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALC-KFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~-Gll~  106 (189)
                      +|++++|+||||||||||+++|+ ++++
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            69999999999999999999999 9984

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.92  E-value=3.3e-10  Score=90.26  Aligned_cols=27  Identities=30%  Similarity=0.431  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +|++++|+||||||||||+++|+++++
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            688999999999999999999999875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.92  E-value=2.1e-10  Score=94.70  Aligned_cols=60  Identities=18%  Similarity=0.111  Sum_probs=49.3

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHH---hcccCC-ccEE--------EeecCCC-CCchHHHhhhceeccchh
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLA--------AVTNDIF-TKEDGEFLMRNGALPEER  137 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~---Gll~p~-G~I~--------i~g~di~-~~~~~~~~~~iG~v~Q~~  137 (189)
                      ..+|++++|+||||||||||+++|+   |+..++ |.|+        ++|.++. .....++++.+++++|..
T Consensus        24 ~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   96 (252)
T 4e22_A           24 TAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ   96 (252)
T ss_dssp             TTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence            3578999999999999999999999   998888 9998        7777773 234556778899988653

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.88  E-value=9.8e-10  Score=84.23  Aligned_cols=40  Identities=15%  Similarity=0.075  Sum_probs=35.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCc--cEEEeecCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY--SLAAVTNDIF  119 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G--~I~i~g~di~  119 (189)
                      +|++++|+||||||||||+++|++.+.+.|  .+++.+.++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP   76 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence            799999999999999999999999988777  6777776664

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.86  E-value=1.2e-10  Score=107.85  Aligned_cols=55  Identities=13%  Similarity=0.082  Sum_probs=37.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEeecCCCCCc---hHHHhhhceeccchh
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTKE---DGEFLMRNGALPEER  137 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g~di~~~~---~~~~~~~iG~v~Q~~  137 (189)
                      .++|+|||||||||||++|+|++.| + |.|.+++.++....   ..++++.++|+||++
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~  106 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI  106 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---C
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccc
Confidence            4999999999999999999999988 6 99999988752111   234567899999975

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.86  E-value=2e-10  Score=95.42  Aligned_cols=53  Identities=30%  Similarity=0.189  Sum_probs=39.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      +.|+||||||||||+++|++.+. .+.|.+++.++......+..+.++++||..
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~  128 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETA  128 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSTTTHHHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHHHHHHhhHHHHHHHHHHHHH
Confidence            88999999999999999999875 578888887653222223344567777764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.84  E-value=2.3e-09  Score=86.00  Aligned_cols=60  Identities=20%  Similarity=0.086  Sum_probs=43.3

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHh--cccC-----C-ccEEEeecCCCCC-chHHHhhhceeccchh
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCK--FLRD-----K-YSLAAVTNDIFTK-EDGEFLMRNGALPEER  137 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~G--ll~p-----~-G~I~i~g~di~~~-~~~~~~~~iG~v~Q~~  137 (189)
                      .++|++++|+||||||||||++.|++  ++++     . +.+++.+.+.... ...++.+.+++.+|+.
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~   89 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDV   89 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHH
Confidence            35799999999999999999999999  5554     4 6777777663221 1223455788877653

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.83  E-value=9e-10  Score=96.33  Aligned_cols=54  Identities=15%  Similarity=0.400  Sum_probs=44.5

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccC--CccEEEeecCCCCCchHHHhhhceeccc
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDIFTKEDGEFLMRNGALPE  135 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p--~G~I~i~g~di~~~~~~~~~~~iG~v~Q  135 (189)
                      ..+|++++|+|||||||||||++|+++++|  .|.|.+.+.++. .   .++..+++++|
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q  188 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQ  188 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEE
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEe
Confidence            457899999999999999999999999987  399988887663 1   23456888888

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.83  E-value=1.8e-10  Score=94.23  Aligned_cols=53  Identities=30%  Similarity=0.189  Sum_probs=38.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      +.|+||||||||||+++|++.+. .+.|.+++.++......+..+.++++||..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~  104 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETA  104 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSCTTHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHHHHHHhhHHHHHHHHHHHHH
Confidence            88999999999999999999875 578888887653222223344566676653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.82  E-value=8e-10  Score=96.28  Aligned_cols=30  Identities=30%  Similarity=0.484  Sum_probs=23.8

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|. +| +++|+|||||||||||.+|+..+
T Consensus        18 ~i~~~-~g-~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           18 DIEFQ-SG-ITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEECC-SE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEecC-CC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            34444 35 88899999999999999999543

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.82  E-value=1.3e-09  Score=86.37  Aligned_cols=59  Identities=20%  Similarity=0.042  Sum_probs=43.2

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccch
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~  136 (189)
                      ..+|++++|+||||||||||++.|++.+.+. +.|.+.+.+.......++...+++.+|.
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   79 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEE   79 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGG
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHH
Confidence            3479999999999999999999999887766 8898888765321112223356665554

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.81  E-value=5.9e-10  Score=96.53  Aligned_cols=56  Identities=18%  Similarity=0.147  Sum_probs=42.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-----ccEEEe----ecCCCCCchHHHhhhceeccchhH
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-----YSLAAV----TNDIFTKEDGEFLMRNGALPEERI  138 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-----G~I~i~----g~di~~~~~~~~~~~iG~v~Q~~~  138 (189)
                      ++.++|+||||||||||+++|+|+++|+     |+|.++    +.++ .....++ +.|++++|++.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~  234 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI  234 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence            8999999999999999999999999874     677663    3333 2233334 56888888764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.80  E-value=4.3e-10  Score=91.87  Aligned_cols=39  Identities=15%  Similarity=0.164  Sum_probs=34.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHH---hcccCC-ccEEEeecCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~---Gll~p~-G~I~i~g~di  118 (189)
                      ++++++|+||||||||||+++|+   |+..++ |+|.+.+.+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~   68 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKA   68 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhc
Confidence            46899999999999999999999   999888 9988876543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.80  E-value=3.5e-09  Score=93.69  Aligned_cols=108  Identities=18%  Similarity=0.059  Sum_probs=57.9

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHH--HhcccCC-c-----cEEEeecCCCCC-chHHHhhhceeccchhHHHHHhcCCCC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLAL--CKFLRDK-Y-----SLAAVTNDIFTK-EDGEFLMRNGALPEERIRAVETGGCPH  148 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L--~Gll~p~-G-----~I~i~g~di~~~-~~~~~~~~iG~v~Q~~~~~i~~g~~~~  148 (189)
                      .++|+++.|+||||||||||++.|  .++++++ |     .|+|++.+.... ...++++.+++.+|...+++.+.....
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~  254 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN  254 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence            447999999999999999999955  4566552 3     677777664221 122345678887775434443332211


Q ss_pred             CC-hHHHHHHHHHHHhhcC-----CchhhccccccCCh----HHHHh
Q 029723          149 AA-IREDISINLGPLEELS-----NLFKADLLLCESGG----GNLQT  185 (189)
Q Consensus       149 ~~-~~~d~~~v~~~L~~lg-----L~~~~~~~~~eLSG----Gqrq~  185 (189)
                      .. ..+...++.+++....     ++.....+..++||    ++||+
T Consensus       255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~  301 (400)
T 3lda_A          255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQM  301 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHH
Confidence            10 0112233444444433     33344455567775    67665

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.78  E-value=3.6e-09  Score=83.03  Aligned_cols=56  Identities=16%  Similarity=0.188  Sum_probs=38.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-c-cEEEeecCCCCCchHHHhhhceeccchhH
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G-~I~i~g~di~~~~~~~~~~~iG~v~Q~~~  138 (189)
                      .+|++++|+||||||||||+++|++++.|+ + .+........   . .....++|+||++.
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~---~-~~~~~~~~~~~~~~   61 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMR---E-GEVDGVDYFFKTRD   61 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCC---T-TCCBTTTBEECCHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCC---C-CccCCCceEEcCHH
Confidence            368999999999999999999999998776 5 3322222110   0 11234778887764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.76  E-value=1.1e-09  Score=97.75  Aligned_cols=60  Identities=22%  Similarity=0.080  Sum_probs=38.1

Q ss_pred             cccCcccC-CCcE--EEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723           72 ILSRNFNE-RAFT--VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (189)
Q Consensus        72 ~~~~~f~~-~Gei--vgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~  138 (189)
                      ..+++|.- +|++  ++|+|||||||||||++|+|+.-       .+.++........++.++|++|++.
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-------~g~~~~~~~~~~~~~~i~~v~Q~~~   92 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-------EGEPATHTQPGVQLQSNTYDLQESN   92 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------CCSSCEEEEEEEEEEC--
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-------cCCcCCCCCccceEeeEEEEeecCc
Confidence            55666665 4899  99999999999999999999841       2222211111123457899999764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.74  E-value=2.4e-09  Score=83.55  Aligned_cols=48  Identities=23%  Similarity=0.168  Sum_probs=35.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      |++++|+||||||||||+++|++   +. |.+.+++.++..      ...+++++|..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~------~~~~~~~~~~~   50 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH------MVVGGYRPPWE   50 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT------TCCTTCCCGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh------hhccccccCcc
Confidence            57899999999999999999987   34 788888765421      12356666643

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.73  E-value=2.7e-09  Score=84.49  Aligned_cols=40  Identities=25%  Similarity=0.384  Sum_probs=35.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCccE--EEeecCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSL--AAVTNDI  118 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I--~i~g~di  118 (189)
                      .+|++++|+|+||||||||+++|++.+...|.+  .+++.++
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~   64 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV   64 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence            569999999999999999999999998844887  8887665

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.72  E-value=1.9e-09  Score=99.05  Aligned_cols=88  Identities=19%  Similarity=0.146  Sum_probs=56.3

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-c-cEE-EeecCCCC-------CchH---HHhhhceeccchhHH--HHH
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLA-AVTNDIFT-------KEDG---EFLMRNGALPEERIR--AVE  142 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G-~I~-i~g~di~~-------~~~~---~~~~~iG~v~Q~~~~--~i~  142 (189)
                      ..+|++++|+|+||||||||+++|++++.|+ | .|. +++.++..       ....   ...+.+++++|+...  ++.
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~iv  445 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIA  445 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence            4479999999999999999999999999987 5 686 66544311       1121   234567888886431  111


Q ss_pred             hcCCCCCChHHHHHHHHHHHhhcC
Q 029723          143 TGGCPHAAIREDISINLGPLEELS  166 (189)
Q Consensus       143 ~g~~~~~~~~~d~~~v~~~L~~lg  166 (189)
                      +... ........+++.++|+.++
T Consensus       446 i~~~-~~~~~~~r~~~r~lL~~~g  468 (552)
T 3cr8_A          446 ICAP-IAPYRQTRRDVRAMIEAVG  468 (552)
T ss_dssp             EECC-CCCCHHHHHHHHHHHHTTS
T ss_pred             EEec-CCccHHHHHHHHHHHHHcC
Confidence            1111 1112345567778888776

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.70  E-value=2.4e-09  Score=90.73  Aligned_cols=31  Identities=26%  Similarity=0.507  Sum_probs=27.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY  109 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G  109 (189)
                      .++.+++|+|++|||||||+++|.+++.+.|
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g   59 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY   59 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence            3578999999999999999999999997643

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.65  E-value=1.2e-08  Score=92.71  Aligned_cols=39  Identities=21%  Similarity=0.310  Sum_probs=35.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      .+|++++|+|||||||||||++|+++++|+ |.|.+.+.+
T Consensus       258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            468999999999999999999999999998 989988765

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.64  E-value=1.8e-08  Score=78.66  Aligned_cols=36  Identities=22%  Similarity=0.223  Sum_probs=30.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEee
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVT  115 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g  115 (189)
                      +|++++|+||||||||||+++|++++++ . +.|.+..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~tt   41 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT   41 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEEC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccC
Confidence            5899999999999999999999998864 3 6665443

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.64  E-value=1.5e-08  Score=80.39  Aligned_cols=42  Identities=29%  Similarity=0.380  Sum_probs=37.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~  120 (189)
                      .++++++|+|+||||||||+++|++++++. |.|.+.+.|...
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~   62 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI   62 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence            468999999999999999999999999877 889888777643

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.62  E-value=4.1e-09  Score=102.86  Aligned_cols=36  Identities=25%  Similarity=0.170  Sum_probs=30.6

Q ss_pred             CCcccCcccCC--------CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           70 PPILSRNFNER--------AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        70 ~~~~~~~f~~~--------GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ...|+++|...        |++++|+||||||||||||+| |++.
T Consensus       770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            45677777643        799999999999999999999 9876

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.62  E-value=2.9e-08  Score=76.30  Aligned_cols=53  Identities=15%  Similarity=0.135  Sum_probs=38.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHh-hhceeccch
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFL-MRNGALPEE  136 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~-~~iG~v~Q~  136 (189)
                      .+|++++|+|+||||||||+++|++.+   |.+.+++.++..  ...+. ..+|+.+|+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~--~~~~~~~~~g~~~~~   59 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHP--RRNIEKMASGEPLND   59 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence            358999999999999999999999876   678888766632  11122 245666665

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.61  E-value=1.3e-08  Score=88.65  Aligned_cols=42  Identities=21%  Similarity=0.392  Sum_probs=34.1

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhcccCC--ccEEEeecCC
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDI  118 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~--G~I~i~g~di  118 (189)
                      ...++++++|+|||||||||||++|+|+++|+  |.|...+.++
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~  162 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI  162 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence            44567899999999999999999999999875  5565555444

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.60  E-value=2.1e-09  Score=103.88  Aligned_cols=35  Identities=17%  Similarity=0.161  Sum_probs=30.3

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ...|+++|.. +|++++|+||||||||||||+|+++
T Consensus       661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             eecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            3567888875 5899999999999999999999865

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.57  E-value=2.5e-09  Score=95.08  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=26.5

Q ss_pred             cCcccCC-CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           74 SRNFNER-AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        74 ~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +++|+-+ +++++|+|+|||||||||++|++..
T Consensus       149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            3444443 6899999999999999999999984

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.55  E-value=2.2e-08  Score=78.32  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=29.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccC-----------C-ccEEEeecC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRD-----------K-YSLAAVTND  117 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p-----------~-G~I~i~g~d  117 (189)
                      -.++|+|+|||||||||+.+++...+           . |.|.+++.+
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~   77 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT   77 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence            46899999999999999999998764           3 566666544

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.54  E-value=3.8e-08  Score=79.73  Aligned_cols=57  Identities=23%  Similarity=0.235  Sum_probs=42.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCC------CchHH----HhhhceeccchhH
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFT------KEDGE----FLMRNGALPEERI  138 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~------~~~~~----~~~~iG~v~Q~~~  138 (189)
                      .+|++++|+|+||||||||+++|+++   .|+|.+.+.+...      ....+    .++.+++++|...
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~   84 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYV   84 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHH
Confidence            46899999999999999999999998   6789998876531      11111    1346788888654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.51  E-value=3.1e-08  Score=85.80  Aligned_cols=40  Identities=25%  Similarity=0.254  Sum_probs=33.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcc--cCC-----cc-EEEeecCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-----YS-LAAVTNDI  118 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-----G~-I~i~g~di  118 (189)
                      ++|+++.|+||||||||||++.|++..  +|+     |. |+|++.+.
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            479999999999999999999999987  443     46 78887765

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.51  E-value=4.8e-08  Score=78.66  Aligned_cols=27  Identities=22%  Similarity=0.172  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +|++++|+||||||||||++.|++.++
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            589999999999999999999999875

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.51  E-value=9.2e-09  Score=82.07  Aligned_cols=56  Identities=20%  Similarity=0.122  Sum_probs=40.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc---cCC-ccEEE--------eecCCCC-CchHHHhhhceeccch
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL---RDK-YSLAA--------VTNDIFT-KEDGEFLMRNGALPEE  136 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll---~p~-G~I~i--------~g~di~~-~~~~~~~~~iG~v~Q~  136 (189)
                      +.+++|+|++|||||||+++|++.+   .++ |.+..        .+.++.. ....++++.+++++|+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   73 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS   73 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence            4689999999999999999999876   456 87776        4555421 1223455678887765

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.49  E-value=8.6e-08  Score=76.48  Aligned_cols=29  Identities=31%  Similarity=0.450  Sum_probs=27.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      .+|++++|+||||||||||+++|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            57999999999999999999999999876

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.48  E-value=1.2e-07  Score=80.52  Aligned_cols=47  Identities=19%  Similarity=0.178  Sum_probs=40.1

Q ss_pred             CcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-c-cEEEeecCCCCC
Q 029723           75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTK  121 (189)
Q Consensus        75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G-~I~i~g~di~~~  121 (189)
                      ..|..+|++++|+|+|||||||+++.|++.+.++ | +|.+.+.|....
T Consensus        99 ~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~  147 (296)
T 2px0_A           99 WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI  147 (296)
T ss_dssp             SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST
T ss_pred             ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc
Confidence            3345678999999999999999999999999875 7 899998887543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.46  E-value=9.1e-08  Score=73.94  Aligned_cols=29  Identities=24%  Similarity=0.143  Sum_probs=25.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC-cc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YS  110 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~  110 (189)
                      .+++|+|||||||||||++|++++.+. +.
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~~~~~~   56 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLGGLSAK   56 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence            399999999999999999999998775 54

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.44  E-value=1.5e-07  Score=80.79  Aligned_cols=63  Identities=19%  Similarity=0.316  Sum_probs=48.4

Q ss_pred             cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HHH-----hhhceec-cch
Q 029723           74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF-----LMRNGAL-PEE  136 (189)
Q Consensus        74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~~-----~~~iG~v-~Q~  136 (189)
                      +++|. .++++++|+|+||+||||++..|++.+.+. ++|.+.+.|+.....    ..+     +.++.++ +|.
T Consensus        97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~  171 (320)
T 1zu4_A           97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK  171 (320)
T ss_dssp             CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred             CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence            45554 458999999999999999999999999887 899999999854321    122     3467788 553

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.43  E-value=1.1e-07  Score=82.31  Aligned_cols=41  Identities=32%  Similarity=0.564  Sum_probs=36.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~  120 (189)
                      ++.+++|+|+|||||||||+.|++.+.++ ++|.|.+.|+.+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~  114 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS  114 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence            47899999999999999999999999887 899999988754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.43  E-value=1.6e-07  Score=80.82  Aligned_cols=39  Identities=28%  Similarity=0.469  Sum_probs=33.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc--CC-ccEEEeecCCCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFT  120 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~--p~-G~I~i~g~di~~  120 (189)
                      .+++|+||||||||||+++|.+++.  |+ |.+.+...|...
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            4899999999999999999999987  45 788887777643

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.42  E-value=1.5e-07  Score=79.59  Aligned_cols=47  Identities=19%  Similarity=0.100  Sum_probs=41.8

Q ss_pred             ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (189)
Q Consensus        73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~  120 (189)
                      .+++|. +|++++|+|+||+||||++..|++++.+. ++|.+.+.|+..
T Consensus        91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence            356666 89999999999999999999999999887 899999998854

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.42  E-value=1.4e-07  Score=75.61  Aligned_cols=60  Identities=17%  Similarity=0.003  Sum_probs=39.9

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHH-HhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           78 NERAFTVGIGGPVGTGKTALMLAL-CKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L-~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      .++|+++.|+||||||||||+..+ ....+..+.+.+...+.......++.+.+|+.+|+.
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~   80 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPY   80 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHH
Confidence            347999999999999999995544 555555556666655543222223344678877764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.40  E-value=1e-07  Score=73.68  Aligned_cols=40  Identities=30%  Similarity=0.348  Sum_probs=31.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCc--cEEEeecCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY--SLAAVTNDI  118 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G--~I~i~g~di  118 (189)
                      .+|++++|+|++||||||++++|++.+++.|  .|.+++..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence            3689999999999999999999999887665  455565433

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.39  E-value=1.7e-07  Score=80.02  Aligned_cols=42  Identities=33%  Similarity=0.426  Sum_probs=38.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~  120 (189)
                      .++++++|+|+|||||||+++.|+++++++ ++|.+.+.|...
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            468999999999999999999999999888 899999988754

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.37  E-value=1.1e-07  Score=90.27  Aligned_cols=40  Identities=18%  Similarity=0.042  Sum_probs=34.5

Q ss_pred             CCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhccc-CC-ccE
Q 029723           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSL  111 (189)
Q Consensus        70 ~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~-p~-G~I  111 (189)
                      ...++++|.  |++++|+||||||||||||+|+|+.. +. |.+
T Consensus       567 ~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~  608 (765)
T 1ewq_A          567 FVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIALLAQVGSF  608 (765)
T ss_dssp             CCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred             eEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence            466788888  99999999999999999999999864 55 754

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.35  E-value=1.9e-07  Score=89.05  Aligned_cols=36  Identities=19%  Similarity=0.091  Sum_probs=32.3

Q ss_pred             CCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        70 ~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ...|+++|..+|++++|+||||||||||||+|+|+.
T Consensus       596 ~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          596 FIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeeecccccCCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            356788888779999999999999999999999975

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.32  E-value=2.3e-07  Score=70.81  Aligned_cols=32  Identities=22%  Similarity=0.232  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEee
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT  115 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g  115 (189)
                      +.+++|+|+||||||||+++|++.+.+   +.+++
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~---~~id~   35 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNM---EFYDS   35 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTC---EEEEH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCC---CEEec
Confidence            578999999999999999999998753   44543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.32  E-value=1.1e-07  Score=73.67  Aligned_cols=30  Identities=30%  Similarity=0.298  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-c
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-Y  109 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G  109 (189)
                      +|+.++|+||||+|||||+++|++.+.+. |
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g   67 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKG   67 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence            58999999999999999999999998754 5

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.29  E-value=2.3e-07  Score=78.66  Aligned_cols=53  Identities=21%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHh-cccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           83 TVGIGGPVGTGKTALMLALCK-FLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G-ll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      .+.|+||||+|||||+++|++ ++.|+ |.+.+++.++...  ......+++++|..
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~--~~~~~~~~~~~~~~   92 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA--SNRKLELNVVSSPY   92 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc--ccccceeeeecccc
Confidence            389999999999999999999 77787 9999988765321  12245677776654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.29  E-value=4.4e-07  Score=80.06  Aligned_cols=37  Identities=22%  Similarity=0.306  Sum_probs=32.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHh------------cccCC-ccEEEee
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCK------------FLRDK-YSLAAVT  115 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~G------------ll~p~-G~I~i~g  115 (189)
                      .+|.+++|+|+|||||||||++|+|            .+.|+ |.|.+.+
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~   67 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   67 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence            4689999999999999999999999            45677 8888765

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.27  E-value=2e-07  Score=79.38  Aligned_cols=40  Identities=30%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             CCCcE--EEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           79 ERAFT--VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        79 ~~Gei--vgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      ..|++  +.|.||||+|||||++++++.+.+. +.+.+.+.+.
T Consensus        42 ~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~   84 (340)
T 1sxj_C           42 DEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA   84 (340)
T ss_dssp             HTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred             hcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence            35666  9999999999999999999988765 5555555444

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=4.9e-07  Score=71.27  Aligned_cols=35  Identities=26%  Similarity=0.290  Sum_probs=24.1

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ...+++|.- ++.++.|+|++|||||||.+.|+..+
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            445666664 47999999999999999999999866

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.23  E-value=6.2e-07  Score=70.62  Aligned_cols=36  Identities=25%  Similarity=0.221  Sum_probs=28.9

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEee
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT  115 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g  115 (189)
                      .++|++++|+||||||||||++.|++  .+.+.+.+..
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~   52 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVD   52 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEE
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEE
Confidence            45799999999999999999999999  4344454443

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.22  E-value=5.2e-07  Score=82.30  Aligned_cols=66  Identities=23%  Similarity=0.213  Sum_probs=37.6

Q ss_pred             ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (189)
Q Consensus        73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~  138 (189)
                      .++.+..+|++++|+||||+|||||+++|++++.+. +.|.+.+......-....++.+|++++...
T Consensus       100 ~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~  166 (543)
T 3m6a_A          100 QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRII  166 (543)
T ss_dssp             HHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHH
T ss_pred             HHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHH
Confidence            344555589999999999999999999999999877 777765532211111122346777766544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.20  E-value=4.1e-07  Score=71.07  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|+|||||||||+.|++..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            358999999999999999999975

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.19  E-value=8.1e-07  Score=76.32  Aligned_cols=47  Identities=19%  Similarity=0.295  Sum_probs=38.6

Q ss_pred             cCcc-cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723           74 SRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (189)
Q Consensus        74 ~~~f-~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~  120 (189)
                      ++.+ ..++.+++|+|+||+|||||++.|++.+.+. +++.+.+.|+.+
T Consensus        48 ~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~   96 (341)
T 2p67_A           48 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS   96 (341)
T ss_dssp             HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             hCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence            3344 3457999999999999999999999999877 888888877743

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.17  E-value=3.5e-07  Score=79.67  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=21.4

Q ss_pred             CCc-EEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAF-TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~Ge-ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+. +++|+|+|||||||||+.|++...
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence            353 499999999999999999999765

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.12  E-value=1.3e-06  Score=77.02  Aligned_cols=29  Identities=31%  Similarity=0.406  Sum_probs=25.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      ++++++|+|||||||||||++|++++.++
T Consensus        25 ~~~~~~i~G~nG~GKstll~ai~~~~~~~   53 (430)
T 1w1w_A           25 ESNFTSIIGPNGSGKSNMMDAISFVLGVR   53 (430)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence            47999999999999999999999988663

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.09  E-value=1.2e-06  Score=77.87  Aligned_cols=33  Identities=21%  Similarity=0.148  Sum_probs=26.2

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      +..+++|.     ++|+|+|||||||||++|+|+..+.
T Consensus        26 vl~~vsf~-----I~lvG~sGaGKSTLln~L~g~~~~~   58 (418)
T 2qag_C           26 VKRGFEFT-----LMVVGESGLGKSTLINSLFLTDLYS   58 (418)
T ss_dssp             CC-CCCEE-----EEEECCTTSSHHHHHHHHTTCCCCC
T ss_pred             EecCCCEE-----EEEECCCCCcHHHHHHHHhCCCCCC
Confidence            44445544     5999999999999999999998753

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.08  E-value=1.4e-06  Score=84.27  Aligned_cols=39  Identities=15%  Similarity=0.012  Sum_probs=32.3

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHH--------HhcccCC
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLAL--------CKFLRDK  108 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L--------~Gll~p~  108 (189)
                      ...|+++|... |++++|+||||||||||||+|        +|...|.
T Consensus       650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa  697 (934)
T 3thx_A          650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC  697 (934)
T ss_dssp             CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE
T ss_pred             eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc
Confidence            35678888865 899999999999999999999        6665553

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.08  E-value=1.8e-06  Score=67.00  Aligned_cols=39  Identities=26%  Similarity=0.474  Sum_probs=32.0

Q ss_pred             cccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe
Q 029723           76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV  114 (189)
Q Consensus        76 ~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~  114 (189)
                      ....+|.++.|+|++||||||+++.|+..+.+. +.+.+.
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~   47 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL   47 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            334468999999999999999999999988766 666544

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.07  E-value=1.8e-06  Score=68.04  Aligned_cols=27  Identities=41%  Similarity=0.644  Sum_probs=24.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ++.+++|+|++|||||||+++|++.++
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            478999999999999999999999763

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.07  E-value=2e-06  Score=74.92  Aligned_cols=57  Identities=21%  Similarity=0.091  Sum_probs=41.2

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccch
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~  136 (189)
                      .++|+++.|+||||||||||+..|+..+.+. |.+.+....-. . ...+.+++|+.+|+
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s-~-~~~ra~rlgv~~~~  115 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA-L-DPVYAKNLGVDLKS  115 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-C-CHHHHHHHTCCGGG
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc-c-chHHHHHcCCchhh
Confidence            3478999999999999999999999988766 77655443321 1 22355667776554

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.06  E-value=3.2e-06  Score=75.28  Aligned_cols=46  Identities=20%  Similarity=0.118  Sum_probs=41.1

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~  120 (189)
                      .++|. ++++++|+|+|||||||++..|++.+.+. ++|.+.+.|+..
T Consensus        92 ~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           92 LPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             CCCCC-SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             cccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            45666 78999999999999999999999999988 899999998854

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.00  E-value=3.4e-06  Score=71.51  Aligned_cols=47  Identities=23%  Similarity=0.367  Sum_probs=40.5

Q ss_pred             CcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC
Q 029723           75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK  121 (189)
Q Consensus        75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~  121 (189)
                      ++|..++.+++|+|+||+||||++..|++.+.+. ++|.+.+.|+...
T Consensus        92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~  139 (297)
T 1j8m_F           92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP  139 (297)
T ss_dssp             CSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence            4455558999999999999999999999999887 8999999987643

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.98  E-value=5.3e-06  Score=76.38  Aligned_cols=54  Identities=22%  Similarity=0.236  Sum_probs=41.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC--ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~--G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      ..|+.+.|+||||+|||||+++|++++++.  +.+.+.+......     ...+.++++..
T Consensus        58 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~  113 (604)
T 3k1j_A           58 NQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQ  113 (604)
T ss_dssp             HTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecch
Confidence            357899999999999999999999999876  6777776655322     22466666554

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.98  E-value=6.3e-06  Score=71.80  Aligned_cols=30  Identities=33%  Similarity=0.313  Sum_probs=23.9

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      ..+|.-...+++|+|||||||||||++|++
T Consensus        19 ~~~~~~~~g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           19 PGTLNFPEGVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             SEEEECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEcCCeEEEECCCCCChhHHHHHHHH
Confidence            334443323999999999999999999997

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.96  E-value=3.8e-06  Score=66.05  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=20.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      +++|+|+|||||||+.++|+++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            6899999999999999999983

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.95  E-value=4.9e-06  Score=65.29  Aligned_cols=35  Identities=14%  Similarity=0.091  Sum_probs=27.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di  118 (189)
                      ..+++|+|++|||||||.+.|+..+   |.+.++..++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~d~~   52 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC---GYPFIEGDAL   52 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH---TCCEEEGGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---CCEEEeCCcC
Confidence            4689999999999999999999876   4455555444

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.95  E-value=8.7e-06  Score=72.39  Aligned_cols=41  Identities=17%  Similarity=0.233  Sum_probs=34.4

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccC-Cc-cEEEeecCC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDI  118 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p-~G-~I~i~g~di  118 (189)
                      -.+|+++.|.|+||+|||||+..|+..+.+ .| .|.+...+.
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~  242 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM  242 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            347999999999999999999999987765 35 788887665

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.94  E-value=9e-06  Score=66.08  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=28.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEE
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAA  113 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i  113 (189)
                      .+|.++.|.|++||||||+++.|+..+.+.+.+..
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~   58 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM   58 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence            36899999999999999999999998876224433

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.94  E-value=2.6e-06  Score=67.63  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=32.5

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-c--cEEEeec
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTN  116 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G--~I~i~g~  116 (189)
                      ..+|.++.|+|++||||||+.+.|...+.|. |  .+.+++.
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d   63 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD   63 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence            3468999999999999999999999998865 7  6666543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.93  E-value=3.7e-06  Score=78.53  Aligned_cols=58  Identities=21%  Similarity=0.082  Sum_probs=44.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      .++..++|+|++|+|||||++.|++...+  . |+| +++..+......++.+.+.+.+|..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~   67 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVA   67 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEE
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecce
Confidence            35789999999999999999999976654  4 887 5666665556666677777766643

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.91  E-value=5.6e-06  Score=63.04  Aligned_cols=25  Identities=32%  Similarity=0.207  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ..+.+|+|||||||||||.+|+-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999998543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.91  E-value=7.6e-06  Score=74.23  Aligned_cols=53  Identities=30%  Similarity=0.189  Sum_probs=38.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      +.|+||||+|||||+++|++.+. .+.+.+++.++.........+.+..+||..
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a  119 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETA  119 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCTTHHHHHHHHHTTTS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhhhhHHHHHHHHHHHH
Confidence            88999999999999999999864 477888888775433323334455666653

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.89  E-value=5.7e-06  Score=64.80  Aligned_cols=21  Identities=24%  Similarity=0.601  Sum_probs=20.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      +++|+|+||||||||+++|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999998

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.88  E-value=6.1e-06  Score=65.13  Aligned_cols=27  Identities=26%  Similarity=0.378  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +|.++.|+||+|||||||++.|+..++
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            578899999999999999999998764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.86  E-value=6.7e-06  Score=72.10  Aligned_cols=52  Identities=19%  Similarity=0.172  Sum_probs=36.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~  137 (189)
                      ++|++++|+||||||||||+++|++.+  .|.+...+  +..   ......++++||..
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~~~--~~~---~~~~~~lg~~~q~~  218 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELC--GGKALNVN--LPL---DRLNFELGVAIDQF  218 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH--CCEEECCS--SCT---TTHHHHHGGGTTCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhc--CCcEEEEe--ccc---hhHHHHHHHhcchh
Confidence            458999999999999999999999965  35554421  111   11223477888765

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.86  E-value=3.9e-06  Score=76.43  Aligned_cols=106  Identities=9%  Similarity=-0.038  Sum_probs=60.6

Q ss_pred             CcccCCCcEEEEEcCCCchHHHHHHHHHh--cccCC-ccEEEeecCCCCCchHHHh---hhceeccchhHHHHHhcCCCC
Q 029723           75 RNFNERAFTVGIGGPVGTGKTALMLALCK--FLRDK-YSLAAVTNDIFTKEDGEFL---MRNGALPEERIRAVETGGCPH  148 (189)
Q Consensus        75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~G--ll~p~-G~I~i~g~di~~~~~~~~~---~~iG~v~Q~~~~~i~~g~~~~  148 (189)
                      .++. ++..+.|+|++||||||+|++|+.  +.+.+ +.+.+...|........+.   .-.+.|.+++......-.   
T Consensus       162 ldL~-~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~---  237 (512)
T 2ius_A          162 ADLA-KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALR---  237 (512)
T ss_dssp             EEGG-GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHH---
T ss_pred             EEcc-cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHH---
Confidence            3343 367899999999999999999875  44556 8888888877532211111   112234455432211100   


Q ss_pred             CChHHHHHHHHHHHhhcCCchhhc---cccccCChHHHHh
Q 029723          149 AAIREDISINLGPLEELSNLFKAD---LLLCESGGGNLQT  185 (189)
Q Consensus       149 ~~~~~d~~~v~~~L~~lgL~~~~~---~~~~eLSGGqrq~  185 (189)
                      ....+..+| .++|..+++.+...   +....+|+||+|+
T Consensus       238 ~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~  276 (512)
T 2ius_A          238 WCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIP  276 (512)
T ss_dssp             HHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCB
T ss_pred             HHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCccc
Confidence            011222233 46788888765332   2334678888764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.84  E-value=8.2e-06  Score=72.85  Aligned_cols=44  Identities=25%  Similarity=0.477  Sum_probs=38.3

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK  121 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~  121 (189)
                      ..++.+++|+|+|||||||++..|+..+.+. ++|.+...|+...
T Consensus        94 ~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~  138 (433)
T 3kl4_A           94 TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP  138 (433)
T ss_dssp             CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence            3457899999999999999999999999887 8999988887543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.79  E-value=5.1e-06  Score=73.51  Aligned_cols=37  Identities=22%  Similarity=0.159  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc------------CC-ccEEEeecCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR------------DK-YSLAAVTNDI  118 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~------------p~-G~I~i~g~di  118 (189)
                      -.++|+|+||+||||||+.|+|...            +. |.+.++|.++
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            4799999999999999999999853            34 6777777543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.77  E-value=1.1e-05  Score=61.58  Aligned_cols=26  Identities=31%  Similarity=0.364  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++..++|+|++|+|||||++.|++..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999999864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.77  E-value=9.5e-06  Score=67.21  Aligned_cols=36  Identities=17%  Similarity=0.179  Sum_probs=29.1

Q ss_pred             CcccCcccC-C---CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           71 PILSRNFNE-R---AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        71 ~~~~~~f~~-~---GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +..+++|.- +   |++++|+|++|||||||+++|++.+.
T Consensus        34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            445555553 3   89999999999999999999998654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.77  E-value=1.4e-05  Score=62.68  Aligned_cols=27  Identities=30%  Similarity=0.294  Sum_probs=24.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      .+++|+|++|||||||++.|++.+++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~   33 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCAR   33 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence            589999999999999999999987643

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.76  E-value=7.2e-06  Score=74.04  Aligned_cols=31  Identities=19%  Similarity=0.217  Sum_probs=24.1

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ++.|.....+.+|+|+|||||||||.+|..+
T Consensus        53 ~~~l~f~~g~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           53 QLELELGGGFCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             CEEEECCCSEEEEEESHHHHHHHHTHHHHHH
T ss_pred             eEEEecCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence            3344433339999999999999999999665

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.69  E-value=1.9e-05  Score=67.54  Aligned_cols=23  Identities=30%  Similarity=0.242  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHh
Q 029723           81 AFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      ..+.+|+|||||||||||.+|+.
T Consensus        23 ~~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999998854

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.69  E-value=2e-05  Score=59.48  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ..++|+|++|+|||||++.+++..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999854

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.67  E-value=2.3e-05  Score=62.46  Aligned_cols=28  Identities=29%  Similarity=0.217  Sum_probs=22.8

Q ss_pred             CcccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           75 RNFNERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ++|.  ..+.+|+|||||||||||.+|+-+
T Consensus        19 i~f~--~~~~~I~G~NgsGKStil~ai~~~   46 (203)
T 3qks_A           19 VEFK--EGINLIIGQNGSGKSSLLDAILVG   46 (203)
T ss_dssp             EECC--SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEeC--CCeEEEEcCCCCCHHHHHHHHHHH
Confidence            4454  358999999999999999998643

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.67  E-value=3e-05  Score=67.02  Aligned_cols=54  Identities=20%  Similarity=0.199  Sum_probs=36.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccC-CccEEEeecCCCCCchHHHhhhceecc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLAAVTNDIFTKEDGEFLMRNGALP  134 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p-~G~I~i~g~di~~~~~~~~~~~iG~v~  134 (189)
                      ++|+++.|.||||||||||+..++..... .+.+.+...+.. ... .+.+.+|+.+
T Consensus        59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-~~~-~~a~~lG~~~  113 (349)
T 2zr9_A           59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-LDP-EYAKKLGVDT  113 (349)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCH-HHHHHTTCCG
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-cCH-HHHHHcCCCH
Confidence            47999999999999999998888765543 467776655432 222 2344555433

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.66  E-value=2e-05  Score=60.52  Aligned_cols=25  Identities=28%  Similarity=0.242  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      +|.+++|+|++||||||+.+.|+..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~   27 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQE   27 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4778999999999999999999853

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.64  E-value=2.2e-05  Score=59.18  Aligned_cols=24  Identities=25%  Similarity=0.249  Sum_probs=21.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ++.|+|++||||||+.+.|+..+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999987653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.63  E-value=2.6e-05  Score=62.92  Aligned_cols=25  Identities=24%  Similarity=0.538  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ++.+++|+|++||||||+.++|++.
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999999874

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.61  E-value=3.3e-05  Score=68.21  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ..+..++|+|+||+||||||++|++.
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            45778999999999999999999997

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.60  E-value=3.5e-05  Score=60.39  Aligned_cols=34  Identities=21%  Similarity=0.095  Sum_probs=27.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCCc-cEEEee
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVT  115 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~G-~I~i~g  115 (189)
                      .+++|+|++|||||||+..|+..++..| +|.+..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik   39 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   39 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence            4799999999999999999999887553 555444

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.60  E-value=2e-05  Score=63.99  Aligned_cols=35  Identities=31%  Similarity=0.317  Sum_probs=27.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di  118 (189)
                      -+.|+||||+|||||+++|++.+... -+.+++.++
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~~~-~~~i~~~~~   81 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAKVP-FFTISGSDF   81 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCC-EEEECSCSS
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcCCC-EEEEeHHHH
Confidence            47899999999999999999987532 355665555

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.59  E-value=3.4e-05  Score=58.78  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ..++|+|++|+|||||++.|++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999984

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.56  E-value=3.6e-05  Score=59.09  Aligned_cols=23  Identities=39%  Similarity=0.476  Sum_probs=20.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999999963

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.55  E-value=7.5e-05  Score=58.06  Aligned_cols=34  Identities=18%  Similarity=0.270  Sum_probs=27.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEE
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAA  113 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i  113 (189)
                      ++.++.|.|++||||||+.+.|+..+...|.+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~   36 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL   36 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence            4678999999999999999999987665454433

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.54  E-value=2.9e-05  Score=65.43  Aligned_cols=26  Identities=23%  Similarity=0.155  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +..+++|+|+||+|||||++.|+|..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            34689999999999999999999963

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.54  E-value=1.8e-05  Score=62.04  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=23.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      +++|+|++|||||||++.|+..+.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999887654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.53  E-value=4.9e-05  Score=57.89  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +.++.|+|++||||||+.+.|+..+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56899999999999999999998654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.53  E-value=4.4e-05  Score=57.07  Aligned_cols=19  Identities=32%  Similarity=0.447  Sum_probs=18.2

Q ss_pred             EEEEEcCCCchHHHHHHHH
Q 029723           83 TVGIGGPVGTGKTALMLAL  101 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L  101 (189)
                      +++|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999998

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.51  E-value=4.5e-05  Score=62.34  Aligned_cols=38  Identities=18%  Similarity=0.272  Sum_probs=29.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND  117 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~d  117 (189)
                      ..+.++.|+|+||||||||.+.|+..+.. +.+.+++..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~-~~~~~~~D~   67 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG-NIVIIDGDS   67 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTTT-CCEEECGGG
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcCC-CcEEEecHH
Confidence            34689999999999999999999987642 345555543

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.49  E-value=6e-05  Score=57.69  Aligned_cols=26  Identities=27%  Similarity=0.202  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +.++.|.|++||||||+.+.|+..+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56899999999999999999988655

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.49  E-value=4.8e-05  Score=58.86  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=21.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +++|+|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999854

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.47  E-value=7.7e-05  Score=64.03  Aligned_cols=38  Identities=13%  Similarity=0.177  Sum_probs=26.5

Q ss_pred             cccCcccCCCcEEEEEcCCCchHHHHHHHHHh--cccCC-ccE
Q 029723           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCK--FLRDK-YSL  111 (189)
Q Consensus        72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~G--ll~p~-G~I  111 (189)
                      ..++++.-+  .++|+|++||||||||+.|+|  +++.. |.+
T Consensus        27 l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v   67 (360)
T 3t34_A           27 LPTLWDSLP--AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV   67 (360)
T ss_dssp             C----CCCC--EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred             cccccccCC--EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence            334445544  899999999999999999999  44444 544

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.46  E-value=7.2e-05  Score=59.20  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHh
Q 029723           81 AFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      +.+++|+|++||||||++++|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.46  E-value=9.1e-05  Score=57.37  Aligned_cols=25  Identities=28%  Similarity=0.626  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      +..+++|+|++||||||+.+.|+..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4578999999999999999999985

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.45  E-value=8.6e-05  Score=57.65  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +|.+++|+|++||||||+.+.|...+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            47789999999999999999999876

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.44  E-value=7.9e-05  Score=57.78  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ++.+++|+|++||||||+.+.|+..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4688999999999999999999876

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.43  E-value=9.3e-05  Score=64.07  Aligned_cols=37  Identities=14%  Similarity=-0.051  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN  116 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~  116 (189)
                      .+.-+.|+|++|||||||++.|+..+.+. +.|.+.+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~   71 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP   71 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            45678999999999999999999877766 77777653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.43  E-value=7.6e-05  Score=57.37  Aligned_cols=26  Identities=35%  Similarity=0.303  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++.++.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999998754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.42  E-value=5.5e-05  Score=57.87  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++.|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.42  E-value=7.9e-05  Score=56.45  Aligned_cols=22  Identities=18%  Similarity=0.128  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh
Q 029723           82 FTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++.|+|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999987

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.38  E-value=0.00011  Score=58.99  Aligned_cols=26  Identities=19%  Similarity=0.126  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      -.++|+|++|+|||||++.|+|...+
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~~~   55 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRKVF   55 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCcC
Confidence            46899999999999999999997543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.35  E-value=9.7e-05  Score=57.11  Aligned_cols=31  Identities=23%  Similarity=0.118  Sum_probs=20.9

Q ss_pred             ccCcccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++++..+.-.++|+|++|+|||||++.+++
T Consensus        15 ~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           15 ASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ---------CEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence            3555666666799999999999999999997

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.34  E-value=0.00015  Score=59.89  Aligned_cols=35  Identities=29%  Similarity=0.317  Sum_probs=29.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g  115 (189)
                      ...+.|+||+|+|||||+++|+..+.+. +.+...+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~   82 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID   82 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence            3579999999999999999999998776 6555444

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.34  E-value=0.00012  Score=56.39  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++.+++|+|++||||||+.+.|+..+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            56799999999999999999998654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.34  E-value=9.3e-05  Score=60.74  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ++.|+||||||||||.+.|+..+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC
Confidence            689999999999999999987543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.33  E-value=0.00012  Score=56.09  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +.+++|+|++||||||+.+.|+..+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999987643

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.32  E-value=0.00012  Score=56.11  Aligned_cols=26  Identities=27%  Similarity=0.203  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++.++.|+|++||||||+.+.|+..+
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            46788999999999999999998543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.32  E-value=0.00012  Score=57.07  Aligned_cols=27  Identities=19%  Similarity=0.276  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +|.+++|+|++||||||+.+.|...+.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999987554

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.32  E-value=0.00012  Score=56.59  Aligned_cols=28  Identities=21%  Similarity=0.326  Sum_probs=23.7

Q ss_pred             cccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           76 NFNERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        76 ~f~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .|..+.-.++|+|++|+|||||++.+++
T Consensus        24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           24 IFGKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             hccCCccEEEEECCCCCCHHHHHHHHHh
Confidence            4455567799999999999999999975

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.31  E-value=0.00011  Score=60.54  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .++|+|++|||||||++.|+|...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            589999999999999999999753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.31  E-value=0.00013  Score=56.93  Aligned_cols=27  Identities=22%  Similarity=0.198  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ++.+++|+|++||||||+.+.|+..+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999987654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.30  E-value=0.0002  Score=53.74  Aligned_cols=27  Identities=41%  Similarity=0.379  Sum_probs=23.3

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ..+...++|+|++|+|||||++.+++-
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            345678999999999999999999874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.29  E-value=0.00013  Score=56.01  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +.++.|+|++||||||+.+.|+..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.29  E-value=0.00012  Score=55.86  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=22.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      ++.|+|++||||||+.+.|+..+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~   27 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999887653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.27  E-value=0.00012  Score=56.88  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=21.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +++|+|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998854

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.26  E-value=0.00019  Score=56.04  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.++.|+|++||||||+.+.|+..+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.26  E-value=0.00013  Score=57.80  Aligned_cols=23  Identities=39%  Similarity=0.605  Sum_probs=20.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.|+||+|||||||++.|+...
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            37899999999999999997654

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.26  E-value=0.00012  Score=63.28  Aligned_cols=27  Identities=30%  Similarity=0.405  Sum_probs=22.5

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHH
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~  102 (189)
                      .++|.  ..+..|+|+|||||||||.+|+
T Consensus        20 ~i~f~--~gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           20 RIKFE--KGIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEECC--SEEEEEEECTTSSHHHHHHHHH
T ss_pred             EEecC--CCeEEEECCCCCCHHHHHHHHH
Confidence            34454  3689999999999999999997

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.24  E-value=0.00014  Score=59.79  Aligned_cols=25  Identities=36%  Similarity=0.715  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ..+++|+||+|||||||.++|+..+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.23  E-value=6.1e-05  Score=58.73  Aligned_cols=31  Identities=19%  Similarity=0.111  Sum_probs=25.1

Q ss_pred             ccCcccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      ..++|..+.-.++|+|++|+|||||++.+++
T Consensus        17 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           17 QFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             HHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             HHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3445555555689999999999999999986

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.23  E-value=0.00021  Score=62.33  Aligned_cols=23  Identities=43%  Similarity=0.601  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHh
Q 029723           81 AFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      +..++|+|.+++|||||++.|++
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~   24 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTK   24 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            35689999999999999999998

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.23  E-value=0.00031  Score=62.87  Aligned_cols=43  Identities=23%  Similarity=0.486  Sum_probs=35.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK  121 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~  121 (189)
                      .+..++.|+|++|+||||++..|+..+... .++.+...|....
T Consensus        98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~  141 (443)
T 3dm5_A           98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP  141 (443)
T ss_dssp             SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence            356899999999999999999999988776 5788887777543

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.23  E-value=0.0002  Score=56.79  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++-++.|+|++||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.22  E-value=0.00026  Score=55.07  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=26.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA  113 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i  113 (189)
                      ..+.|.||+|+|||||+++|+..+... ..+.+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~   87 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI   87 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            678999999999999999999887655 45543

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.21  E-value=0.00013  Score=55.72  Aligned_cols=26  Identities=38%  Similarity=0.497  Sum_probs=18.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++.++.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            35789999999999999999998654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.20  E-value=0.00015  Score=63.17  Aligned_cols=28  Identities=29%  Similarity=0.618  Sum_probs=24.2

Q ss_pred             CCCcE--EEEEcCCCchHHHHHHHHHhccc
Q 029723           79 ERAFT--VGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        79 ~~Gei--vgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+|++  +.|+|++|||||||.++|++.+.
T Consensus        20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           20 EDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             TTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            35666  99999999999999999998753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.20  E-value=0.00022  Score=56.01  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+..+.|.||+|+|||||++.|+..+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            568899999999999999999987654

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.20  E-value=0.00016  Score=55.36  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=22.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      +++|+|++||||||+.+.|...+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~   26 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQ   26 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999887643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.20  E-value=0.00019  Score=55.48  Aligned_cols=25  Identities=28%  Similarity=0.659  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      --.++|+|+.|+|||||++.+++-.
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhCC
Confidence            4568999999999999999998753

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.19  E-value=0.00032  Score=55.02  Aligned_cols=37  Identities=27%  Similarity=0.463  Sum_probs=27.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di  118 (189)
                      .+++|+|++|+|||||++.|++.+.....+.+...+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~   67 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV   67 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC
Confidence            5799999999999999999988653323444444343

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.00021  Score=54.64  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .-.++|+|++|+|||||++.|++..
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578999999999999999999864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.17  E-value=0.00021  Score=55.10  Aligned_cols=25  Identities=24%  Similarity=0.146  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +.+++|+|++||||||+.+.|+..+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.17  E-value=0.00018  Score=60.20  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=26.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEe
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAV  114 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~  114 (189)
                      .+.++.|+||||||||||.+.|+..++ .+.+.|+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is   65 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVID   65 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEe
Confidence            467899999999999999999987553 2444444

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.16  E-value=0.00021  Score=52.83  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.+++-.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58899999999999999998753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.15  E-value=0.00021  Score=53.27  Aligned_cols=23  Identities=30%  Similarity=0.276  Sum_probs=20.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.+++..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            58999999999999999998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.15  E-value=0.00023  Score=52.37  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|++|+|||||++.+++-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.14  E-value=0.00023  Score=55.99  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997644

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.14  E-value=0.00025  Score=60.04  Aligned_cols=29  Identities=31%  Similarity=0.419  Sum_probs=25.6

Q ss_pred             CCc--EEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           80 RAF--TVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        80 ~Ge--ivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      .+.  .+.|+||+|+|||||++.+++.+.+.
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            346  89999999999999999999988764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.14  E-value=0.00024  Score=52.64  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999973

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.12  E-value=0.00024  Score=52.27  Aligned_cols=22  Identities=36%  Similarity=0.363  Sum_probs=20.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|+.|+|||||++.+++-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.12  E-value=0.00015  Score=54.76  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=22.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .+.-.++|+|++|+|||||++.+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4566799999999999999999984

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.12  E-value=0.00025  Score=56.55  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++.++.|+|++||||||+.+.|+..+
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45789999999999999999998644

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.12  E-value=0.00019  Score=60.34  Aligned_cols=29  Identities=34%  Similarity=0.360  Sum_probs=25.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      ..+..+.|.||+|+|||||++.+++.+.+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            44688999999999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.12  E-value=0.00023  Score=52.21  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|+.|+|||||++.+++-.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999998753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.11  E-value=0.00028  Score=51.88  Aligned_cols=23  Identities=35%  Similarity=0.289  Sum_probs=20.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.+++..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998863

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.11  E-value=0.00028  Score=59.05  Aligned_cols=36  Identities=25%  Similarity=0.194  Sum_probs=27.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEee
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT  115 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g  115 (189)
                      ..+..+.|.||+|+|||||+++|+..+. ..-+.+++
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i~v~~   82 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKG   82 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTT-CEEEEECH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhC-CCEEEEEh
Confidence            3567899999999999999999998763 23344443

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.11  E-value=0.00024  Score=54.23  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ..+++|+|++||||||+.+.|+..+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999997644

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.11  E-value=0.00035  Score=57.30  Aligned_cols=29  Identities=24%  Similarity=0.340  Sum_probs=25.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      +|.++.|.|++||||||+++.|...+...
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~   54 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN   54 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999877654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.11  E-value=0.00026  Score=52.41  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.+++-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999999864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.10  E-value=0.00025  Score=55.36  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=21.4

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      +..+..+.-.++|+|++|+|||||++.+++-
T Consensus        23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             hHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            3444445567999999999999999999853

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.10  E-value=0.00024  Score=53.66  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++.|+|++||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.10  E-value=0.00019  Score=62.05  Aligned_cols=24  Identities=29%  Similarity=0.282  Sum_probs=20.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .++|+|++|+|||||++.|++...
T Consensus        39 ~I~vvG~~g~GKSTLln~L~~~~~   62 (361)
T 2qag_A           39 TLMVVGESGLGKSTLINSLFLTDL   62 (361)
T ss_dssp             CEEECCCTTSCHHHHHHHHTTCCC
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCCC
Confidence            479999999999999999987643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.10  E-value=0.00025  Score=59.01  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.|+|..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999963

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.10  E-value=0.00019  Score=53.24  Aligned_cols=23  Identities=30%  Similarity=0.283  Sum_probs=20.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.+++..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            58999999999999999998754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.09  E-value=0.00027  Score=55.65  Aligned_cols=23  Identities=17%  Similarity=0.140  Sum_probs=20.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997644

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.09  E-value=0.0004  Score=59.63  Aligned_cols=39  Identities=33%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      +..+++|+|++|+|||||++.|+..+... -+|.+...|+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp  117 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP  117 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence            34689999999999999999999877554 4666666664

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.09  E-value=0.00027  Score=52.42  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|++|+|||||++.+++-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999875

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.09  E-value=0.00026  Score=52.58  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=19.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.+++..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999998643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.09  E-value=0.00028  Score=52.84  Aligned_cols=23  Identities=30%  Similarity=0.271  Sum_probs=20.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.+++-.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.09  E-value=0.00028  Score=52.13  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=20.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|++|+|||||++.+++-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999874

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.08  E-value=0.00028  Score=52.15  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=20.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|+.|+|||||++.+++-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48899999999999999998754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=96.15  E-value=8e-05  Score=57.84  Aligned_cols=30  Identities=23%  Similarity=0.312  Sum_probs=23.6

Q ss_pred             CcccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           75 RNFNERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ..+..+.-.++|+|++|+|||||++.+++-
T Consensus        24 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           24 LYFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            344445567999999999999999888753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.08  E-value=0.00028  Score=52.83  Aligned_cols=24  Identities=38%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.+++-.
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            458999999999999999998754

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.08  E-value=0.0003  Score=52.90  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=20.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +++|+|++||||||+.+.|...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.08  E-value=0.00026  Score=52.45  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.+++-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            48999999999999999998753

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.07  E-value=0.00033  Score=54.49  Aligned_cols=25  Identities=24%  Similarity=0.143  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ..+++|+|++||||||+.+.|+..+
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999998543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.06  E-value=0.00035  Score=53.81  Aligned_cols=24  Identities=29%  Similarity=0.438  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .-.++|+|++|+|||||++.+++-
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999999875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.06  E-value=0.00034  Score=52.89  Aligned_cols=24  Identities=29%  Similarity=0.308  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+++|+|++||||||+.+.|+..+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.06  E-value=0.0003  Score=53.32  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|+.|+|||||++.|++-
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999986

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.06  E-value=0.00046  Score=61.19  Aligned_cols=28  Identities=25%  Similarity=0.253  Sum_probs=25.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+|+.++|+|++|+|||||++.|++.+.
T Consensus       172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          172 GRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             BTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             cCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            3599999999999999999999999764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.05  E-value=0.00029  Score=56.97  Aligned_cols=32  Identities=25%  Similarity=0.202  Sum_probs=25.9

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -..+...|..+.|+||+|||||||...|+...
T Consensus        27 a~~v~~~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           27 GVLVDIYGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             SEEEEETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            34455568889999999999999999988643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.05  E-value=0.00024  Score=53.15  Aligned_cols=24  Identities=33%  Similarity=0.511  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.|++-.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.05  E-value=4e-05  Score=73.55  Aligned_cols=99  Identities=11%  Similarity=-0.077  Sum_probs=57.5

Q ss_pred             CCchHHHHHHHHHhcc---------cCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcC-CCCCC--------
Q 029723           90 VGTGKTALMLALCKFL---------RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAA--------  150 (189)
Q Consensus        90 NGSGKTTLL~~L~Gll---------~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~-~~~~~--------  150 (189)
                      +-.+|+||.+.+....         ++. |.|.++|.+|.......+...++++.|.+.....+.. ...+.        
T Consensus       271 ~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  350 (842)
T 2vf7_A          271 SASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRPEQAIALQ  350 (842)
T ss_dssp             CHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCSSHHHHHH
T ss_pred             CHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcchhhHHHHH
Confidence            4568999998877643         345 7888988887432111122234444333211000000 00000        


Q ss_pred             --hHHHHHHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723          151 --IREDISINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       151 --~~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i  189 (189)
                        ..+...++. .|..++|... +++.+.+|||||+|||+|+
T Consensus       351 ~i~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA  391 (842)
T 2vf7_A          351 RMAADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLA  391 (842)
T ss_dssp             HHHHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHH
Confidence              122334444 6889999864 7999999999999999874

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.05  E-value=0.00029  Score=55.85  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++.++.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34678999999999999999998654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.05  E-value=0.00032  Score=51.84  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=20.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|++|+|||||++.+++-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.04  E-value=0.0003  Score=52.64  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|+.|+|||||++.+++-
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.04  E-value=0.00026  Score=54.31  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+++|+|++||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            368999999999999999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.03  E-value=0.0003  Score=53.74  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      --.++|+|++|+|||||++.|++-.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3568999999999999999999753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.02  E-value=0.00031  Score=53.34  Aligned_cols=24  Identities=29%  Similarity=0.261  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|+.|+|||||++.+++..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            468999999999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.02  E-value=0.00033  Score=52.91  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999974

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.02  E-value=0.00033  Score=53.82  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|+.|+|||||++.+++-
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            46899999999999999998864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.01  E-value=0.00027  Score=54.05  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      +.-.++|+|++|+|||||++.+++.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3456999999999999999999976

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.01  E-value=0.00036  Score=52.69  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.|++-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999998753

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.01  E-value=2.9e-05  Score=75.09  Aligned_cols=89  Identities=12%  Similarity=0.038  Sum_probs=52.2

Q ss_pred             HHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCC---hHHHHHHHHHHHhhcCCchh-
Q 029723           96 ALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA---IREDISINLGPLEELSNLFK-  170 (189)
Q Consensus        96 TLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~---~~~d~~~v~~~L~~lgL~~~-  170 (189)
                      |...|..+.++|+ +.|.|+|.+|.......+...+.|+.+     +.+.......   ......+..++|..++|... 
T Consensus       383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~  457 (916)
T 3pih_A          383 TCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN-----LNLTEREREIVGELLKEIEKRLEFLVDVGLEYLT  457 (916)
T ss_dssp             ECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS-----CCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCB
T ss_pred             cchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh-----ccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccc
Confidence            3445556678888 999999988732211112223333211     0011111110   11223445678889999754 


Q ss_pred             hccccccCChHHHHhhhcC
Q 029723          171 ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       171 ~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++++.+|||||||||+|+
T Consensus       458 l~r~~~~LSGGe~QRv~LA  476 (916)
T 3pih_A          458 LSRSATTLSGGESQRIRLA  476 (916)
T ss_dssp             TTSBGGGCCHHHHHHHHHH
T ss_pred             ccCCcccCCHHHHHHHHHH
Confidence            6899999999999999874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.01  E-value=0.00068  Score=54.50  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=28.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCc-cEEE
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAA  113 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G-~I~i  113 (189)
                      +|.++.|.|++||||||+++.|...+...| .+.+
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~   39 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL   39 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence            588999999999999999999998877653 4433

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.00  E-value=0.00035  Score=53.45  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.|++-
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35899999999999999999984

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.00  E-value=0.00036  Score=51.79  Aligned_cols=23  Identities=30%  Similarity=0.304  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.00  E-value=0.00036  Score=52.93  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      -.++|+|++|+|||||++.|.+...
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4589999999999999999998654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.00  E-value=0.00054  Score=53.89  Aligned_cols=26  Identities=31%  Similarity=0.488  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      -..++|+|.+|+|||||++.++.-+.
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            36789999999999999999987654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.00  E-value=0.00046  Score=56.83  Aligned_cols=28  Identities=32%  Similarity=0.275  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .++..+.|.||+|+|||||+++|++.+.
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            3467899999999999999999998653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.00  E-value=0.00039  Score=52.06  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.+++-.
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhCc
Confidence            358999999999999999998753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.99  E-value=0.0003  Score=53.27  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=20.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.+++-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999999853

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.99  E-value=0.00026  Score=55.06  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999999764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.99  E-value=0.00033  Score=55.09  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999874

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.98  E-value=0.00039  Score=52.26  Aligned_cols=23  Identities=35%  Similarity=0.346  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            45899999999999999999874

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.97  E-value=0.00031  Score=54.09  Aligned_cols=24  Identities=38%  Similarity=0.369  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.|++-.
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC--
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.96  E-value=0.00041  Score=55.06  Aligned_cols=26  Identities=19%  Similarity=0.162  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++-++.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.96  E-value=0.0004  Score=58.52  Aligned_cols=23  Identities=30%  Similarity=0.244  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -+++|+|.+|+|||||++.|+|.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            57999999999999999999985

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.96  E-value=0.00042  Score=51.20  Aligned_cols=22  Identities=23%  Similarity=0.187  Sum_probs=19.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|++|+|||||++.+++-
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999863

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.96  E-value=0.00038  Score=51.97  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|+.|+|||||++.+++-
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.96  E-value=0.00041  Score=51.74  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|+.|+|||||++.+++-.
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            458999999999999999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.95  E-value=0.00043  Score=52.50  Aligned_cols=27  Identities=22%  Similarity=0.190  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.-.++|+|++|+|||||++.+++-.
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            445678999999999999999998743

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.95  E-value=0.00042  Score=51.95  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.+++-.
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            468999999999999999998743

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.94  E-value=0.00043  Score=58.38  Aligned_cols=23  Identities=30%  Similarity=0.273  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+++|+|.+|+|||||++.|++.
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36999999999999999999985

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.94  E-value=0.0005  Score=55.85  Aligned_cols=26  Identities=27%  Similarity=0.096  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++-+++|+|++||||||+.+.|+..+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999997543

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.94  E-value=0.0003  Score=57.41  Aligned_cols=28  Identities=29%  Similarity=0.451  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      +|.+|.|.|++||||||+++.|+..+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6889999999999999999999887653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.94  E-value=0.00041  Score=56.39  Aligned_cols=24  Identities=25%  Similarity=0.665  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+|+|.|++||||||+.+.|...+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999997743

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.94  E-value=0.00045  Score=51.87  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|+.|+|||||++.+++-.
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            358999999999999999998753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.93  E-value=0.00047  Score=52.55  Aligned_cols=28  Identities=29%  Similarity=0.366  Sum_probs=23.7

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      |..+.-.++|+|++|+|||||++.+++-
T Consensus        12 ~~~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           12 FNHQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             HTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            4455667999999999999999999953

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.93  E-value=0.0005  Score=51.52  Aligned_cols=26  Identities=27%  Similarity=0.272  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ...+.|.||+|+|||||++.++..+.
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999988763

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.93  E-value=0.00047  Score=55.11  Aligned_cols=23  Identities=26%  Similarity=0.209  Sum_probs=20.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++.|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.93  E-value=0.00049  Score=56.38  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +.++.|+|++||||||+.+.|+..+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            56899999999999999999998654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.93  E-value=0.00044  Score=57.92  Aligned_cols=28  Identities=36%  Similarity=0.355  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      +..+.|.||+|+|||||++.|+..+...
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~   64 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR   64 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            4578899999999999999999877543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.93  E-value=0.00045  Score=52.58  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|+.|+|||||++.|++-.
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            358999999999999999998753

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.92  E-value=0.00043  Score=59.36  Aligned_cols=26  Identities=35%  Similarity=0.325  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ....++|+|+||+|||||++.|++..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.90  E-value=0.00052  Score=53.60  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.+.|+|++|+|||||++.|++..
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            568999999999999999999864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.90  E-value=0.00045  Score=52.21  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.+++-.
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            358999999999999999998753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.90  E-value=0.00046  Score=56.74  Aligned_cols=23  Identities=30%  Similarity=0.211  Sum_probs=21.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|||||||++.|+|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999863

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.89  E-value=0.0005  Score=52.39  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.|++-.
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            358999999999999999999753

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.89  E-value=0.00058  Score=54.81  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHh
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      +|+.+.|+||+||||||++.+++-
T Consensus        75 ~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           75 QNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCcHHhHHHHHh
Confidence            589999999999999998887653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.89  E-value=0.00051  Score=52.87  Aligned_cols=24  Identities=38%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.+++-.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            458999999999999999998754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.88  E-value=0.00077  Score=54.28  Aligned_cols=30  Identities=27%  Similarity=0.227  Sum_probs=26.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY  109 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G  109 (189)
                      +|.+|.|.|++||||||+++.|...+...|
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~   31 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG   31 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999999999998887554

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.88  E-value=0.00051  Score=52.74  Aligned_cols=23  Identities=35%  Similarity=0.346  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.88  E-value=0.00066  Score=54.41  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=23.5

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +..++.++.|+|++||||||+.+.|+..+
T Consensus        12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44456789999999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.88  E-value=0.00052  Score=52.72  Aligned_cols=23  Identities=35%  Similarity=0.470  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999877654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.88  E-value=0.00052  Score=52.37  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=20.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.+++..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.87  E-value=0.00055  Score=51.69  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999865

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.86  E-value=0.00058  Score=53.79  Aligned_cols=24  Identities=33%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      --.++|+|++|+|||||++.+++-
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            356899999999999999999875

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.86  E-value=0.00051  Score=52.46  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            46899999999999999999874

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.86  E-value=0.00056  Score=51.44  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.86  E-value=0.00058  Score=54.04  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+++|+|..||||||+.+.|...+
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            579999999999999999998753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.86  E-value=0.0005  Score=59.92  Aligned_cols=22  Identities=41%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|++|+|||||+++|++.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999985

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.86  E-value=0.00052  Score=52.73  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|+.|+|||||++.+++-.
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            358999999999999999998753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.85  E-value=0.00054  Score=55.52  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.|++..
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            568999999999999999999753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.85  E-value=0.00054  Score=54.08  Aligned_cols=23  Identities=13%  Similarity=0.033  Sum_probs=20.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998744

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.85  E-value=0.00052  Score=52.27  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999999875

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.85  E-value=0.00036  Score=54.58  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|+.|+|||||++.|++..
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            568999999999999999999864

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.84  E-value=0.002  Score=55.53  Aligned_cols=41  Identities=22%  Similarity=0.263  Sum_probs=32.2

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      -.+|+++.|.|++|+|||||+..|+...... +.|.|...+.
T Consensus        43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm   84 (338)
T 4a1f_A           43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM   84 (338)
T ss_dssp             BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            3479999999999999999998887755434 6777776554

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.83  E-value=0.00076  Score=57.13  Aligned_cols=27  Identities=30%  Similarity=0.235  Sum_probs=23.8

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+++.|.|++|||||||+..++..
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            347899999999999999999888764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.83  E-value=0.00062  Score=51.94  Aligned_cols=23  Identities=30%  Similarity=0.480  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|+.|+|||||++.+++-
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.82  E-value=0.00069  Score=54.89  Aligned_cols=26  Identities=23%  Similarity=0.226  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +..++.|+||+||||+|+.+.|+..+
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999998654

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.82  E-value=0.0011  Score=56.68  Aligned_cols=27  Identities=33%  Similarity=0.284  Sum_probs=24.1

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+++.|.|++|||||||+..|+..
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999988874

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.82  E-value=0.00062  Score=52.47  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.+++-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.81  E-value=0.00063  Score=51.65  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|+.|+|||||++.+++-.
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            458999999999999999998753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.81  E-value=0.00066  Score=55.82  Aligned_cols=24  Identities=33%  Similarity=0.362  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.|+|..
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC
Confidence            358999999999999999999853

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.81  E-value=0.00059  Score=51.42  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh
Q 029723           82 FTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~G  103 (189)
                      -.++|+|++|+|||||++.+++
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            3589999999999999999984

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.81  E-value=0.00083  Score=52.58  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=20.3

Q ss_pred             CCcEEEEEcCCCchHHHHH-HHHHhc
Q 029723           80 RAFTVGIGGPVGTGKTALM-LALCKF  104 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL-~~L~Gl  104 (189)
                      +|.++.|.||.||||||+| +++..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4789999999999999997 554443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.81  E-value=0.00063  Score=52.69  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh
Q 029723           82 FTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~G  103 (189)
                      -.++|+|++|+|||||++.+++
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999986

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.81  E-value=0.00075  Score=52.26  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999974

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.80  E-value=0.00067  Score=50.92  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      --.++|+|+.|+|||||++.+++-
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999999864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.80  E-value=0.0006  Score=52.76  Aligned_cols=24  Identities=29%  Similarity=0.084  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.+++-.
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            468999999999999999999854

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.80  E-value=0.00066  Score=51.97  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|+.|+|||||++.+++-.
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            358999999999999999998753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.79  E-value=0.00031  Score=59.02  Aligned_cols=27  Identities=15%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +..+++|.|++||||||+.+.|...+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456899999999999999999987554

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.79  E-value=0.0006  Score=52.78  Aligned_cols=25  Identities=32%  Similarity=0.356  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..+.|.||+|+|||||++.++..+.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4789999999999999999987654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.79  E-value=0.00062  Score=52.15  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.+++-.
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            458999999999999999999754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.79  E-value=0.00068  Score=51.88  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|+.|+|||||++.+++-
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.79  E-value=0.00062  Score=56.65  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHh
Q 029723           81 AFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      ..+|+|+|++||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999984

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.78  E-value=0.00065  Score=56.39  Aligned_cols=24  Identities=13%  Similarity=0.163  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++||||||||+.|+|.-
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCCC
Confidence            469999999999999999999974

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.77  E-value=0.0007  Score=52.34  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .-.++|+|++|+|||||++.+++-
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.77  E-value=0.00068  Score=56.08  Aligned_cols=24  Identities=33%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|.+|||||||++.|+|..
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999999853

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.76  E-value=0.0006  Score=51.24  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999874

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.76  E-value=0.00073  Score=51.77  Aligned_cols=24  Identities=33%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.+++-.
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999999753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.76  E-value=0.00067  Score=50.95  Aligned_cols=27  Identities=26%  Similarity=0.217  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      ...+.|+||+|+|||||++.++..+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            466789999999999999999987643

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.75  E-value=0.00075  Score=55.73  Aligned_cols=22  Identities=18%  Similarity=0.128  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh
Q 029723           82 FTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++.|+|++||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.74  E-value=0.00071  Score=53.22  Aligned_cols=25  Identities=24%  Similarity=0.529  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +.+++|+|++||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.74  E-value=0.0007  Score=52.38  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.|++-.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.74  E-value=0.00076  Score=52.60  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|+.|+|||||++.+++-.
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            358999999999999999999753

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.74  E-value=0.00056  Score=56.34  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ..++|+|.+|+|||||++.|++.
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999998764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.73  E-value=0.00055  Score=60.86  Aligned_cols=39  Identities=21%  Similarity=0.396  Sum_probs=32.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~  119 (189)
                      ..+++|+|++|+|||||+..|++.+... .++.+...|.+
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~  138 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY  138 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence            3689999999999999999999988755 57877776654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.73  E-value=0.00071  Score=53.01  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.+++-.
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            358999999999999999988643

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.72  E-value=0.0007  Score=52.48  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            35899999999999999999864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.72  E-value=0.00072  Score=51.60  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.72  E-value=0.00092  Score=54.58  Aligned_cols=27  Identities=33%  Similarity=0.325  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ....+.|.||+|+|||||+++|+..+.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            456789999999999999999998764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.72  E-value=0.00085  Score=53.70  Aligned_cols=23  Identities=30%  Similarity=0.293  Sum_probs=20.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++.|+||+||||+|+.+.|+..+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.71  E-value=0.0015  Score=52.61  Aligned_cols=38  Identities=32%  Similarity=0.432  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~  119 (189)
                      .-++.++|+.|+|||||++.|+..+. . -++.+...|..
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~   52 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG   52 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            46889999999999999999997777 6 46777766653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.71  E-value=0.00088  Score=53.09  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .-.++|+|++|+|||||++.+++-
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            356999999999999999999875

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.71  E-value=0.00064  Score=51.61  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|+.|+|||||++.+++-
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999974

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.70  E-value=0.00085  Score=54.60  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=25.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      +|.++.|.|+.||||||+++.|...+..
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            5889999999999999999999987766

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.70  E-value=0.00053  Score=52.39  Aligned_cols=25  Identities=24%  Similarity=0.085  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .-.++|+|++|+|||||++.+++..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3568999999999999999998765

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.69  E-value=0.0008  Score=52.34  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|+.|+|||||++.+++-
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999974

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.67  E-value=0.00089  Score=51.46  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .-.++|+|+.|+|||||++.+++-
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999999864

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.67  E-value=0.001  Score=51.79  Aligned_cols=25  Identities=28%  Similarity=0.182  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      --.++|+|++|+|||||++.+++-.
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3568999999999999999998753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.66  E-value=0.0011  Score=57.28  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ++.++.|+||.|||||||...|+..+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            456899999999999999999998664

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.66  E-value=0.0024  Score=47.43  Aligned_cols=39  Identities=21%  Similarity=0.130  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      .+.-+.|.||+|+|||+|.+.|....... ..+.++...+
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~   62 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP   62 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCC
Confidence            45568899999999999999999876544 4433555444

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.66  E-value=0.00095  Score=53.67  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +.+++|.|+.||||||+++.|+..++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999997663

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.66  E-value=0.00086  Score=52.61  Aligned_cols=24  Identities=29%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.+++-.
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            458999999999999999999853

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.63  E-value=0.00089  Score=54.97  Aligned_cols=24  Identities=13%  Similarity=0.165  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|.+|+||||||+.|+|..
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCCC
Confidence            469999999999999999999864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.62  E-value=0.00059  Score=51.50  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=9.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.60  E-value=0.001  Score=51.35  Aligned_cols=25  Identities=12%  Similarity=0.131  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      --.+.|+|++|+|||||++.+.+..
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcC
Confidence            3468999999999999999998854

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.59  E-value=0.0013  Score=57.88  Aligned_cols=27  Identities=19%  Similarity=0.078  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ....++.|+|++|||||||.+.|+..+
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            346899999999999999999987643

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.58  E-value=0.0011  Score=50.69  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999875

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.56  E-value=0.0013  Score=54.48  Aligned_cols=25  Identities=28%  Similarity=0.147  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..++|+|.+|+|||||++.|++...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            5799999999999999999998654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.53  E-value=0.0012  Score=51.28  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.+++-.
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhhCC
Confidence            458999999999999999998753

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.53  E-value=0.0008  Score=51.23  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=21.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .+.-.++|+|++|+|||||++.+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHc
Confidence            3456799999999999999999965

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.52  E-value=0.0029  Score=50.43  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEe
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAV  114 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~  114 (189)
                      |.+|+|-|+-||||||+++.|...+.....+.+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~   35 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT   35 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence            4578999999999999999999877533444443

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.50  E-value=0.00085  Score=54.73  Aligned_cols=29  Identities=21%  Similarity=0.379  Sum_probs=24.1

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..++.+|+|.|+.||||||+++.|+..+.
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            34678999999999999999999987663

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.50  E-value=0.0015  Score=52.72  Aligned_cols=28  Identities=36%  Similarity=0.242  Sum_probs=25.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      +|.++.|.|++||||||+++.|...+..
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            6889999999999999999999988765

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.50  E-value=0.0011  Score=55.41  Aligned_cols=24  Identities=50%  Similarity=0.575  Sum_probs=21.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+.|.||+|+|||||+++|+..+.
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            388999999999999999998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.49  E-value=0.0012  Score=59.32  Aligned_cols=23  Identities=39%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhccc
Q 029723           84 VGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +.|+||||+|||||+++|++...
T Consensus        52 vLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           52 ILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            77999999999999999998653

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.49  E-value=0.001  Score=59.95  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=27.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccC-CccEE
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLA  112 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p-~G~I~  112 (189)
                      +|+.++|+|++|+|||||++.|+..... .+.|.
T Consensus       150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~  183 (473)
T 1sky_E          150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS  183 (473)
T ss_dssp             TTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred             cCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence            6889999999999999999999886653 24443

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.48  E-value=0.0014  Score=56.76  Aligned_cols=25  Identities=36%  Similarity=0.595  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+++|+||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4799999999999999999987654

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.48  E-value=0.0014  Score=53.52  Aligned_cols=24  Identities=29%  Similarity=0.254  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|..|+|||||++.|++-.
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.48  E-value=0.0011  Score=58.65  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ...+.|.||+|+|||||+++|+..+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999876

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.48  E-value=0.0015  Score=51.97  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|.+|+|||||++.+++.
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.47  E-value=0.0019  Score=51.70  Aligned_cols=24  Identities=33%  Similarity=0.282  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .-+.|.||+|+|||||++.|+..+
T Consensus        40 ~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999998754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.46  E-value=0.0015  Score=51.43  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.+++..
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            358999999999999999998753

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.46  E-value=0.0014  Score=53.63  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.|++-.
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999854

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.43  E-value=0.0006  Score=52.30  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=4.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999876

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.43  E-value=0.00057  Score=53.35  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.|++-
T Consensus        12 ~ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           12 YKICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEEECCTTSSHHHHHCBCTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999854

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.42  E-value=0.0012  Score=58.45  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|++|+|||||++.|+|..
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~~   47 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGER   47 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            479999999999999999999853

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.41  E-value=0.0037  Score=52.74  Aligned_cols=40  Identities=25%  Similarity=0.186  Sum_probs=29.8

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      -.+|+++.|.|++|+|||||+..++...... ..+.+...+
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            3479999999999999999988887543323 456666544

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.40  E-value=0.0016  Score=50.55  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.39  E-value=0.0017  Score=49.66  Aligned_cols=23  Identities=48%  Similarity=0.647  Sum_probs=20.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.|.||+|+|||||++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999998764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.39  E-value=0.0018  Score=54.75  Aligned_cols=38  Identities=24%  Similarity=0.256  Sum_probs=27.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di  118 (189)
                      ..-+.|.||+|+|||||++.|+..+...--+.++..++
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l   82 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL   82 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence            45688999999999999999998763222344554444

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.37  E-value=0.0028  Score=53.52  Aligned_cols=37  Identities=30%  Similarity=0.339  Sum_probs=29.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      +..+.|.||+|+|||||++.++..+... ..+.+.+..
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~  107 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE  107 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence            4579999999999999999999988754 444555444

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.33  E-value=0.0022  Score=52.79  Aligned_cols=26  Identities=31%  Similarity=0.540  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+..+.|.||+|+|||||++.|+..+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999888766

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.32  E-value=0.002  Score=55.37  Aligned_cols=25  Identities=36%  Similarity=0.476  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .++.|+||+|||||||.+.|+..+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999988653

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.32  E-value=0.0022  Score=55.47  Aligned_cols=39  Identities=26%  Similarity=0.244  Sum_probs=29.3

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN  116 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~  116 (189)
                      -++|.++.|.|++|+|||||...++...... +.+.+...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            3478999999999999999998887654433 45555443

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.32  E-value=0.0019  Score=54.26  Aligned_cols=28  Identities=32%  Similarity=0.344  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..+..+.|.||+|+|||||++.++..+.
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999998764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.30  E-value=0.0031  Score=57.12  Aligned_cols=41  Identities=22%  Similarity=0.352  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~  120 (189)
                      +..+++|+|++|||||||+..|+..+... -++.+...|...
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r  141 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR  141 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            35689999999999999999999766544 357776666643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.23  E-value=0.001  Score=53.87  Aligned_cols=22  Identities=45%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhcc
Q 029723           84 VGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +.|.||+|+|||||+++|+..+
T Consensus        47 vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6799999999999999998754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.18  E-value=0.0022  Score=52.45  Aligned_cols=26  Identities=31%  Similarity=0.455  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ...+.|.||+|+|||||++.|+..+.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45678999999999999999998764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.17  E-value=0.0032  Score=54.12  Aligned_cols=25  Identities=40%  Similarity=0.448  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ..++.|+||+|||||||...|+..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4578999999999999999998755

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.17  E-value=0.0032  Score=49.81  Aligned_cols=39  Identities=28%  Similarity=0.177  Sum_probs=27.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHH-h-cccCCccEEEeecC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALC-K-FLRDKYSLAAVTND  117 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~-G-ll~p~G~I~i~g~d  117 (189)
                      ++|+++.|.|++|+|||||+.-++ . ..+....+.+...+
T Consensus        28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E   68 (251)
T 2zts_A           28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE   68 (251)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence            479999999999999999976554 2 33323456665443

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.16  E-value=0.0055  Score=49.57  Aligned_cols=28  Identities=29%  Similarity=0.152  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      +..+.|.|++|+|||+|++.|+......
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~~~   56 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSSRW   56 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTSTTT
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCcc
Confidence            4568899999999999999999887644

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.15  E-value=0.0023  Score=53.37  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..+.|.||+|+|||+|.++|+..+.
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5677889999999999999998763

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.13  E-value=0.0031  Score=51.66  Aligned_cols=23  Identities=17%  Similarity=0.138  Sum_probs=20.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+||+|++||||||+.+.|+..+
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999997654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.11  E-value=0.0037  Score=52.17  Aligned_cols=26  Identities=31%  Similarity=0.192  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .-.++|+|.+|+|||||++.|++...
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCce
Confidence            45799999999999999999998653

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.07  E-value=0.0029  Score=53.11  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=23.0

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++|+++.|.|++|+|||||+..++.
T Consensus        95 l~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           95 LESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999988875

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.07  E-value=0.0029  Score=55.49  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=19.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|.+++|||||++.|++.-
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999853

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.07  E-value=0.0031  Score=51.40  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ...+.|.||+|+|||||++.|+..+.
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            35688999999999999999988643

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.04  E-value=0.005  Score=52.60  Aligned_cols=41  Identities=10%  Similarity=-0.090  Sum_probs=31.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccC--------C-ccEEEeecCCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD--------K-YSLAAVTNDIF  119 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p--------~-G~I~i~g~di~  119 (189)
                      .++..+.|.||+|+|||++++.++..+..        . -.|.+++..+.
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~   92 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA   92 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence            45778899999999999999999987741        2 34667765543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.04  E-value=0.0025  Score=56.02  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=21.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|+|||||++.|++..
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~~   27 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGER   27 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999853

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.02  E-value=0.0042  Score=53.11  Aligned_cols=27  Identities=26%  Similarity=0.240  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ....+.|.||+|+|||||+++|+..+.
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            456789999999999999999988653

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.02  E-value=0.004  Score=53.03  Aligned_cols=27  Identities=33%  Similarity=0.503  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ....+.|.||+|+|||||.++|+..+.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            345688999999999999999998763

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.01  E-value=0.0037  Score=53.46  Aligned_cols=27  Identities=33%  Similarity=0.375  Sum_probs=23.5

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      +...|..+.|+|++|+|||||...|..
T Consensus       140 v~~~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          140 VDVYGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEECCEEEEEEeCCCCCHHHHHHHHHh
Confidence            333688899999999999999999987

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.01  E-value=0.0039  Score=50.61  Aligned_cols=37  Identities=22%  Similarity=0.181  Sum_probs=26.0

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV  114 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~  114 (189)
                      ..+|.++.|.|+.|+||||++..++..+... -.+.+.
T Consensus         9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A            9 KKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             --CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            3468999999999999999776665544433 355555

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.98  E-value=0.0042  Score=52.34  Aligned_cols=33  Identities=27%  Similarity=0.297  Sum_probs=26.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc-CC-ccEEE
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAA  113 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~-p~-G~I~i  113 (189)
                      +.-+.|.||+|+|||+|+++|+..+. .. .++.+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~  186 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTL  186 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEE
Confidence            57889999999999999999998765 44 34443

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.0034  Score=55.82  Aligned_cols=36  Identities=28%  Similarity=0.349  Sum_probs=26.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF  119 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~  119 (189)
                      =+.|.||+|+|||+|.++|++.+... -+.+.+.++.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~~~~~-~~~v~~~~l~  243 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANSTKAA-FIRVNGSEFV  243 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHHHTCE-EEEEEGGGTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC-eEEEecchhh
Confidence            37899999999999999999976532 2444554443

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.0033  Score=56.04  Aligned_cols=37  Identities=30%  Similarity=0.310  Sum_probs=26.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF  119 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~  119 (189)
                      .=+.|.||+|+|||+|.++|++.+... -+.+.+.++.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e~~~~-~~~v~~s~l~  252 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAATIGAN-FIFSPASGIV  252 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCE-EEEEEGGGTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCC-EEEEehhhhc
Confidence            447799999999999999999976532 2344444443

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.97  E-value=0.0049  Score=53.12  Aligned_cols=51  Identities=12%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             CCCcEEEEEcCCCchHHHHH-HHHHhcccC--CccEEEeecCCCCCchHHHhhhcee
Q 029723           79 ERAFTVGIGGPVGTGKTALM-LALCKFLRD--KYSLAAVTNDIFTKEDGEFLMRNGA  132 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL-~~L~Gll~p--~G~I~i~g~di~~~~~~~~~~~iG~  132 (189)
                      ++| ++-|.||+|+|||||+ .+++...+.  .+.+.+....- ... ..+.+++|+
T Consensus        27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~-s~~-~~ra~~lGv   80 (333)
T 3io5_A           27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF-GIT-PAYLRSMGV   80 (333)
T ss_dssp             CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC-CCC-HHHHHHTTC
T ss_pred             cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc-hhh-HHHHHHhCC
Confidence            357 8999999999999994 444454443  45555443322 122 234555554

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.97  E-value=0.0044  Score=52.32  Aligned_cols=25  Identities=28%  Similarity=0.259  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ...+.|.||+|+|||||++.++..+
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999865

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.94  E-value=0.0038  Score=50.63  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ...+.|.||+|+||||+..+|+..+.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35689999999999999999998774

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.93  E-value=0.004  Score=57.10  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=28.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV  114 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~  114 (189)
                      ...++.|.|++|+||||+++.|+..+... ..|.+.
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~  238 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC  238 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            35789999999999999999999877655 456554

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=95.93  E-value=0.0037  Score=55.90  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      |-.++|+|++|+|||||++.|++.
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            445999999999999999999985

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.93  E-value=0.0033  Score=55.94  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=22.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      .+.|.||+|+|||||+++|+..+..
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCC
Confidence            5889999999999999999987654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.93  E-value=0.0025  Score=49.86  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCchHHHHHHH-HHhc
Q 029723           82 FTVGIGGPVGTGKTALMLA-LCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~-L~Gl  104 (189)
                      -.++|+|++|+|||||++. +.+.
T Consensus        16 ~ki~v~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           16 FKLVLVGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EEEEEEECTTSSHHHHHTTBHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            4589999999999999998 5554

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.93  E-value=0.0044  Score=51.84  Aligned_cols=26  Identities=23%  Similarity=0.183  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +.-+.|.||+|+|||||++.|+..+.
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            45688999999999999999998654

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.93  E-value=0.0059  Score=48.17  Aligned_cols=32  Identities=19%  Similarity=0.336  Sum_probs=25.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCc-cEEEe
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKY-SLAAV  114 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G-~I~i~  114 (189)
                      +|.|=|.-||||||+++.|...++..| .+.+.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            578889999999999999998887654 34443

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.89  E-value=0.0042  Score=53.20  Aligned_cols=25  Identities=40%  Similarity=0.558  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ..++.|+||+|||||||...|+..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4578999999999999999998754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=95.89  E-value=0.0025  Score=54.49  Aligned_cols=24  Identities=13%  Similarity=0.165  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|.+++||||||+.|+|.-
T Consensus        32 ~~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           32 PQIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCC
Confidence            369999999999999999999964

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.88  E-value=0.0054  Score=51.53  Aligned_cols=26  Identities=31%  Similarity=0.335  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..-+.|.||+|+|||||+++|+..+.
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            34688999999999999999987653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.86  E-value=0.0043  Score=52.04  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998765

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.004  Score=55.02  Aligned_cols=35  Identities=31%  Similarity=0.360  Sum_probs=26.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCC
Q 029723           84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF  119 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~  119 (189)
                      +.|.||+|+|||+|.++|++.+... -+.+.+.++.
T Consensus       185 vLL~GPPGTGKTllAkAiA~e~~~~-f~~v~~s~l~  219 (405)
T 4b4t_J          185 VILYGPPGTGKTLLARAVAHHTDCK-FIRVSGAELV  219 (405)
T ss_dssp             EEEESCSSSSHHHHHHHHHHHHTCE-EEEEEGGGGS
T ss_pred             eEEeCCCCCCHHHHHHHHHHhhCCC-ceEEEhHHhh
Confidence            6799999999999999999976532 2444554443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.83  E-value=0.0048  Score=52.75  Aligned_cols=26  Identities=35%  Similarity=0.515  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ...+.|+||+|+|||||.+.|+..+.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999998763

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.0037  Score=55.69  Aligned_cols=36  Identities=28%  Similarity=0.222  Sum_probs=26.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di  118 (189)
                      .-+.|.||+|+|||+|.++|++.+... -+.+.+.++
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e~~~~-f~~v~~s~l  251 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQTNAT-FLKLAAPQL  251 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCE-EEEEEGGGG
T ss_pred             CeeEEECcCCCCHHHHHHHHHHHhCCC-EEEEehhhh
Confidence            447899999999999999999976532 234444444

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.80  E-value=0.0049  Score=51.49  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..+.|.||+|+|||||++.|+..+.
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhC
Confidence            4588999999999999999987653

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.80  E-value=0.0057  Score=50.54  Aligned_cols=25  Identities=20%  Similarity=0.033  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      |.++.|.||.|+|||||++.++...
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~   55 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNER   55 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHc
Confidence            5799999999999999999988654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.79  E-value=0.0049  Score=48.78  Aligned_cols=27  Identities=33%  Similarity=0.353  Sum_probs=22.5

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      +...|.-+.|.|++|+|||||...|..
T Consensus        12 v~v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           12 LVIDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            344578899999999999999887765

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.79  E-value=0.0046  Score=54.94  Aligned_cols=30  Identities=20%  Similarity=0.268  Sum_probs=23.5

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      |.....+|.|+|.+||||||+.+.|+..+.
T Consensus        35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           35 MTNCPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            444557899999999999999999987653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=95.78  E-value=0.0042  Score=56.70  Aligned_cols=24  Identities=29%  Similarity=0.263  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++|+|..|+|||||++.|+|..
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            579999999999999999999863

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.75  E-value=0.0035  Score=55.42  Aligned_cols=25  Identities=32%  Similarity=0.267  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ..-+.|.||+|+|||||+++|+..+
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHc
Confidence            4568899999999999999999876

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.75  E-value=0.0042  Score=53.21  Aligned_cols=25  Identities=32%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .-+.|.||+|+|||||+++|+..+.
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhC
Confidence            4578999999999999999998653

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.72  E-value=0.006  Score=52.99  Aligned_cols=40  Identities=28%  Similarity=0.272  Sum_probs=30.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc-CCccEEEeecCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVTNDI  118 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~-p~G~I~i~g~di  118 (189)
                      ++|.++.|.|++|+|||||+..++.... ..+.+.|...+.
T Consensus        72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            4789999999999999999877765433 335666665543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=95.72  E-value=0.00068  Score=52.35  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.|++-
T Consensus        34 ~ki~vvG~~~~GKSsli~~l~~~   56 (199)
T 3l0i_B           34 FKLLLIGDSGVGKSCLLLRFADD   56 (199)
T ss_dssp             EEEEEECCTTSCCTTTTTSSBCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999998864

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.0063  Score=53.15  Aligned_cols=29  Identities=24%  Similarity=0.259  Sum_probs=24.2

Q ss_pred             ccCCC-cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           77 FNERA-FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        77 f~~~G-eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ....| -.|+|||.+-+||||||+.|++.-
T Consensus        67 v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~   96 (376)
T 4a9a_A           67 VARTGVASVGFVGFPSVGKSTLLSKLTGTE   96 (376)
T ss_dssp             BCBCSSEEEEEECCCCHHHHHHHHHHHSBC
T ss_pred             EeecCCCeEEEECCCCCCHHHHHHHHhCCC
Confidence            34456 469999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	3e-14
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	1e-09
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	2e-06
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	5e-04
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	5e-04
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	9e-04

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 67.2 bits (163), Expect = 3e-14
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 3/117 (2%)

Query: 75  RNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLAAVTNDIFTKEDGEFLMRNGAL 133
                RA  VGI G  G GK+  + AL   L    + +A +  D  +   G  ++ +   
Sbjct: 45  LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 104

Query: 134 PEERIRAVETGGCPHAAIREDISINLGPLE--ELSNLFKADLLLCESGGGNLQTISF 188
                        P  +      +     E   L      D++L E+ G      + 
Sbjct: 105 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAV 161

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 7/96 (7%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFTKEDGEFLMRNGALPEERI 138
               +G+ G  G GK+  + A    L  +   +A +  D  +          G++  ++ 
Sbjct: 53  NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVT------GGSILGDKT 106

Query: 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLL 174
           R  +      A IR   S                L 
Sbjct: 107 RMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLC 142

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 7/94 (7%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-------DGEFLMRNGALPEE 136
           V   G  G+GKT L     ++L D Y +A V  D   KE       D    +    +  E
Sbjct: 3   VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62

Query: 137 RIRAVETGGCPHAAIREDISINLGPLEELSNLFK 170
                      +  + E  +  L  +  L     
Sbjct: 63  GYGPNGAIVESYDRLMEKFNEYLNKILRLEKEND 96

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 64  YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKY----SLAAVTNDIF 119
           +  +  P       N+    +   GP G+GK+   + +   L +KY    S+   + D F
Sbjct: 11  FLDKYIPEWFETG-NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 69

Query: 120 --TKEDGEFLMRN 130
             T ED   L   
Sbjct: 70  YLTHEDQLKLNEQ 82

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 5/111 (4%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142
           V + GP G GKT L+    + L+     +     +   +           L   R     
Sbjct: 4   VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63

Query: 143 TGGCPHAAIREDIS----INLGPLEELSNLFKADLLLCESGGGNLQTISFI 189
            G  P    RE       ++L   E+L+     +       G  +  I  I
Sbjct: 64  VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEI 114

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.0 bits (82), Expect = 9e-04
 Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 3/95 (3%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA-- 140
             + G   +GKT LM         + + +  V +     E       +    E       
Sbjct: 4   WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVAT 63

Query: 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLL 175
              G              L  +  L    + DL+L
Sbjct: 64  AVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVL 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.95
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.95
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.95
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.95
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.95
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.94
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.94
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.93
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.93
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.93
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.92
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.92
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.92
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.91
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.91
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.9
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.89
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.87
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.81
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.92
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.33
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.19
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.17
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.96
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.94
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.93
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.92
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.91
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.86
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.82
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.81
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.77
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.75
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.73
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.73
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.73
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.73
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.72
d1okkd2	207	GTPase domain of the signal recognition particle r	97.71
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.66
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.66
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.65
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.65
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.63
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.61
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.6
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.6
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.57
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.54
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.53
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.51
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.5
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.5
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.5
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.49
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.49
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.49
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.48
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.48
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.46
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.46
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.46
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.44
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.44
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.44
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.44
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.43
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.43
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.41
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.4
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.38
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.38
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.38
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.38
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.37
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.37
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.37
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.36
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.35
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.35
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.34
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.33
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.31
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.28
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.28
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.27
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.27
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.26
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.23
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.19
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.19
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.19
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.18
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.17
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.17
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.17
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.14
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.14
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.14
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.14
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.14
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.13
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.12
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.11
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.11
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.11
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.07
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.07
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.03
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.03
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.02
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.01
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.99
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.95
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.94
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.92
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.92
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.91
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.91
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.9
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.9
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.86
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.86
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.83
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.82
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.82
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.8
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.8
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.8
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.79
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.79
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.76
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.76
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.72
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.71
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.7
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.7
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.7
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.69
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.68
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.67
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.67
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.66
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.63
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.63
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.62
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.62
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.61
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.58
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.58
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.55
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.54
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.53
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.53
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.52
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.52
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.51
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.51
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.51
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	96.5
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.5
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.49
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.48
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.48
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.47
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.47
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.44
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.43
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.43
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.43
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.41
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.4
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.39
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.37
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.34
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.31
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.3
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.3
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.29
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.28
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.22
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.21
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.2
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.18
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.17
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.14
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.11
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.09
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.08
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.05
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.02
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.01
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.0
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.98
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.97
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.96
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.95
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.94
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.92
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.91
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.88
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.86
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.78
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	95.75
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.74
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.72
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.53
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.52
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.49
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.43
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.36
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.3
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.29
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.2
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.14
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.13
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.07
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.06
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.06
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.04
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.99
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.79
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.72
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.44
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.44
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.41
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.29
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.26
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	94.12
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.9
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.86
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	93.77
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.4
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.35
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	93.33
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.32
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.01
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	92.66
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	92.62
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	92.04
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	91.87
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	91.65
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.56
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.3
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.24
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.98
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.71
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.67
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.43
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.13
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.94
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	89.58
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.45
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	89.18
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.09
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	88.14
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.81
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	87.75
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	87.72
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	87.51
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	86.95
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	86.48
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	86.35
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	85.86
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	85.55
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	84.91
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	84.66
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	84.09
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	81.39

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.95  E-value=4.1e-29  Score=206.34  Aligned_cols=113  Identities=17%  Similarity=0.142  Sum_probs=97.1

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhc
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETG  144 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g  144 (189)
                      +++|...+|+++|+|||||||||||++|+|+++|+ |+|.++|.++...++.  +++||||||++.        +++.++
T Consensus        17 ~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~ltV~enl~~~   94 (240)
T d2onka1          17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSVYRNIAYG   94 (240)
T ss_dssp             EEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred             EEEEEeCCEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCceeeccchhhcccchhhHhhhhh
Confidence            67787767999999999999999999999999999 9999999999766543  578999999975        677776


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       145 ~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      .. .....+..+++.++|+.++|.+..++++.+|||||||||+|+
T Consensus        95 l~-~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiA  138 (240)
T d2onka1          95 LR-NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA  138 (240)
T ss_dssp             CT-TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHH
T ss_pred             hc-ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHH
Confidence            43 234445567899999999999999999999999999999974

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=5.6e-29  Score=205.45  Aligned_cols=118  Identities=12%  Similarity=-0.038  Sum_probs=96.1

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      .+.++++|+-+ ||+++|+|||||||||||++|+|+++|+ |+|.++|+++...++.  +++||||||++.        +
T Consensus        20 ~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e   97 (239)
T d1v43a3          20 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYE   97 (239)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCHHH
T ss_pred             EEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEEEEeechhhcccchHHH
Confidence            35667777665 8999999999999999999999999999 9999999999766543  468999999986        5


Q ss_pred             HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.+.... .+...+..+++.++|+.++|+...++++.+|||||||||+|+
T Consensus        98 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiA  148 (239)
T d1v43a3          98 NIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA  148 (239)
T ss_dssp             HHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence            55554432 233455677899999999999999999999999999999974

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=2.4e-29  Score=207.97  Aligned_cols=121  Identities=15%  Similarity=0.023  Sum_probs=99.8

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc---hHHHhhhceeccchhH-----
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI-----  138 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~---~~~~~~~iG~v~Q~~~-----  138 (189)
                      ..+..+++|+-+ ||+++|+|||||||||||++|+|+++|+ |+|.++|.++...+   ...++++||||||++.     
T Consensus        18 ~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~l   97 (242)
T d1oxxk2          18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL   97 (242)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred             EEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccc
Confidence            345667777765 8999999999999999999999999999 99999999986433   2234568999999975     


Q ss_pred             ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++... .+...+..+++.++|+.++|+...++++.+|||||||||+|+
T Consensus        98 tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA  152 (242)
T d1oxxk2          98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA  152 (242)
T ss_dssp             CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             cHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHH
Confidence               677766432 333455677899999999999999999999999999999974

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=7.5e-29  Score=204.81  Aligned_cols=120  Identities=16%  Similarity=0.071  Sum_probs=99.4

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH------
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------  138 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~------  138 (189)
                      .+.++++|.-+ ||+++|+|||||||||||++|+|+++|+ |+|.|+|.++...+..+   ++++||||||++.      
T Consensus        19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~t   98 (240)
T d3dhwc1          19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT   98 (240)
T ss_dssp             EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSB
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCcc
Confidence            35677777765 8999999999999999999999999999 99999999998766554   3568999999975      


Q ss_pred             --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                        +++.++.. ..+...+..+++.++|+.++|.+..++++.+|||||||||+|+
T Consensus        99 v~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiA  152 (240)
T d3dhwc1          99 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA  152 (240)
T ss_dssp             HHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHh
Confidence              45554322 2233345567899999999999999999999999999999974

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4.5e-29  Score=205.23  Aligned_cols=118  Identities=15%  Similarity=-0.026  Sum_probs=70.9

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~  139 (189)
                      .+..+++|+- +||+++|+|||||||||||++|+|+++|+ |+|.++|.++...+.  .+++||||||++.        +
T Consensus        14 ~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~v~Q~~~l~~~~tv~e   91 (232)
T d2awna2          14 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGMVFQSYALYPHLSVAE   91 (232)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEEECSSCCC--------
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhceeeeeccccccccchhHHH
Confidence            3455666665 49999999999999999999999999999 999999999976554  3478999999986        3


Q ss_pred             HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus        92 ni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiA  142 (232)
T d2awna2          92 NMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG  142 (232)
T ss_dssp             -------------CHHHHHHHHHHHHC---------------------CHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHH
Confidence            44443221 112234567899999999999999999999999999999974

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=2.9e-28  Score=200.17  Aligned_cols=120  Identities=18%  Similarity=0.075  Sum_probs=98.1

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH-----
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI-----  138 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~-----  138 (189)
                      .+.++++|.-+ ||+++|+|||||||||||++|+|+++|+ |+|.|+|.++...+..++    ++.||||||++.     
T Consensus        19 ~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~   98 (230)
T d1l2ta_          19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL   98 (230)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred             EEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCc
Confidence            35677777765 9999999999999999999999999999 999999999988776654    357999999975     


Q ss_pred             ---HHHHhcCC----CCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGC----PHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~----~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++..    ......+..+++.++|+.++|.+ ..+++|.+|||||||||+|+
T Consensus        99 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIA  157 (230)
T d1l2ta_          99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA  157 (230)
T ss_dssp             CHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred             cHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHH
Confidence               45554321    22334556678899999999976 57999999999999999974

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.94  E-value=7.2e-29  Score=204.92  Aligned_cols=120  Identities=13%  Similarity=-0.033  Sum_probs=97.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH----HhhhceeccchhH-----
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMRNGALPEERI-----  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~----~~~~iG~v~Q~~~-----  138 (189)
                      .+.++++|+- +||+++|+|||||||||||++|+|+++|+ |+|.++|.++...+...    ++++||||||++.     
T Consensus        17 ~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~l   96 (240)
T d1g2912          17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM   96 (240)
T ss_dssp             EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTS
T ss_pred             EEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchh
Confidence            4566777774 59999999999999999999999999999 99999999986544332    3568999999975     


Q ss_pred             ---HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 ---RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ---~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                         +++.++.. ......+..+++.++|+.++|++..++++.+|||||||||+|+
T Consensus        97 tV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IA  151 (240)
T d1g2912          97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG  151 (240)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred             hhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence               45544432 2233455667899999999999999999999999999999974

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.94  E-value=1.7e-28  Score=201.32  Aligned_cols=115  Identities=16%  Similarity=0.089  Sum_probs=93.8

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      +.++++|+- +||+++|+|||||||||||++|+|+++|+ |+|.++|.++...+..  +++||||||++.        +|
T Consensus        15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~~tV~en   92 (229)
T d3d31a2          15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKN   92 (229)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEEECTTCCCCTTSCHHHH
T ss_pred             EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--HhcceeeccccccCccccHHHH
Confidence            356666665 49999999999999999999999999999 9999999999765543  578999999975        45


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++.....  ..+.+++.++++.++|....++++.+|||||||||+|+
T Consensus        93 l~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiA  139 (229)
T d3d31a2          93 LEFGMRMKK--IKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALA  139 (229)
T ss_dssp             HHHHHHHHC--CCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHH
T ss_pred             HHHHHhhcc--ccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhh
Confidence            544322110  11356799999999999999999999999999999974

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=8e-27  Score=193.79  Aligned_cols=120  Identities=19%  Similarity=0.139  Sum_probs=98.2

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhh-hceeccchhH--------
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI--------  138 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~-~iG~v~Q~~~--------  138 (189)
                      .+.++++|.- +||+++|+|||||||||||++|+|+++|+ |+|.++|.++...++.++++ .|+|+||++.        
T Consensus        18 ~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~   97 (254)
T d1g6ha_          18 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVL   97 (254)
T ss_dssp             EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHH
T ss_pred             EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeee
Confidence            3556677765 49999999999999999999999999999 99999999998888777654 6999999975        


Q ss_pred             HHHHhcCCCCC--------------ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHA--------------AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~--------------~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.++.....              ..++..+++.++|+.+++....++++.+|||||||||+|+
T Consensus        98 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iA  162 (254)
T d1g6ha_          98 ENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG  162 (254)
T ss_dssp             HHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             eeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHH
Confidence            56665532211              1133456788899999999889999999999999999874

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.93  E-value=6.2e-27  Score=193.13  Aligned_cols=120  Identities=17%  Similarity=0.077  Sum_probs=94.0

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhh-hceeccchhH--------
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI--------  138 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~-~iG~v~Q~~~--------  138 (189)
                      .+.++++|.-+ ||+++|+|||||||||||++|+|+++|+ |+|.|+|.++...+...+.+ .++|+||++.        
T Consensus        20 ~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~   99 (240)
T d1ji0a_          20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVY   99 (240)
T ss_dssp             EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHH
T ss_pred             EEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHH
Confidence            35567777654 9999999999999999999999999999 99999999998766655543 6899999864        


Q ss_pred             HHHHhcCCCCCChHHHHHHHHHHHhhc-CCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~~~~~d~~~v~~~L~~l-gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.++...........+.+.++++.+ ++....++++.+|||||||||+|+
T Consensus       100 en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iA  151 (240)
T d1ji0a_         100 ENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG  151 (240)
T ss_dssp             HHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHH
Confidence            555555443333333445566677766 577788999999999999999874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=6.7e-27  Score=194.83  Aligned_cols=119  Identities=13%  Similarity=0.062  Sum_probs=94.1

Q ss_pred             CcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc-------------hHHHhhhceeccc
Q 029723           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------------DGEFLMRNGALPE  135 (189)
Q Consensus        71 ~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~-------------~~~~~~~iG~v~Q  135 (189)
                      +..+++|.-+ ||+++|+||||||||||+++|+|+++|+ |+|.++|.++....             ...++++||||||
T Consensus        17 al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ   96 (258)
T d1b0ua_          17 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ   96 (258)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECS
T ss_pred             EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEe
Confidence            5566777654 9999999999999999999999999999 99999999985332             1235678999999


Q ss_pred             hhH--------HHHHhcC--CCCCChHHHHHHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723          136 ERI--------RAVETGG--CPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       136 ~~~--------~~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++.        +++.++.  .......+..+++.++|+.++|.+. .++++.+|||||||||+|+
T Consensus        97 ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iA  161 (258)
T d1b0ua_          97 HFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA  161 (258)
T ss_dssp             SCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred             chhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHH
Confidence            975        4444432  1223335566789999999999864 5788999999999999874

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.92  E-value=5.3e-26  Score=187.69  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=87.0

Q ss_pred             CCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH------
Q 029723           67 RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------  138 (189)
Q Consensus        67 ~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------  138 (189)
                      +.....++++|.-+ |++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++|+||||++.      
T Consensus        13 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti   92 (242)
T d1mv5a_          13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTI   92 (242)
T ss_dssp             SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEH
T ss_pred             CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcch
Confidence            33446677777765 8999999999999999999999999999 999999999988887788899999999985      


Q ss_pred             -HHHHhcCCCCCChHHHHHHHHHHHhhcCCc-------hhhc----cccccCChHHHHhhhcC
Q 029723          139 -RAVETGGCPHAAIREDISINLGPLEELSNL-------FKAD----LLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 -~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~-------~~~~----~~~~eLSGGqrq~~~~i  189 (189)
                       +++.++......    ...+.++++...+.       ...+    ....+||||||||++|+
T Consensus        93 ~eNi~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iA  151 (242)
T d1mv5a_          93 RENLTYGLEGDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA  151 (242)
T ss_dssp             HHHTTSCTTSCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred             hhheecccccccc----hhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHH
Confidence             555454333222    22222333322221       1222    33457999999999974

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.9e-26  Score=188.32  Aligned_cols=120  Identities=16%  Similarity=0.115  Sum_probs=92.5

Q ss_pred             CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      .+.++++|.- +|++++||||||||||||+++|+|+++|+ |+|.|+|.++...+..++++.|+||||++.       ++
T Consensus        28 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  107 (251)
T d1jj7a_          28 LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQEN  107 (251)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHH
T ss_pred             EeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhh
Confidence            4566777765 49999999999999999999999999999 999999999988888889999999999985       66


Q ss_pred             HHhcCCCCCChHHH-----HHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIRED-----ISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d-----~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++..........     ...+.+.++.+  ++....++.+.+|||||||||+|+
T Consensus       108 i~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiA  163 (251)
T d1jj7a_         108 IAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALA  163 (251)
T ss_dssp             HHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHH
T ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEe
Confidence            76664433322111     11223445555  344456677889999999999974

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=5.1e-26  Score=187.42  Aligned_cols=120  Identities=16%  Similarity=0.101  Sum_probs=96.0

Q ss_pred             CCCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723           69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (189)
Q Consensus        69 ~~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------  138 (189)
                      ..+..+++|. .+||++||+|||||||||||++|+|+++|+ |+|.++|.++.. ...+.++.++||||++.        
T Consensus        15 ~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i~~vpq~~~~~~~ltv~   93 (238)
T d1vpla_          15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGI   93 (238)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCCCTTSBHH
T ss_pred             EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhhEeEeeeccccCCCccHH
Confidence            3456677777 459999999999999999999999999999 999999999865 45567789999999864        


Q ss_pred             HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.+... ......+..+++..+++.++|....++++.+||||||||++|+
T Consensus        94 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA  145 (238)
T d1vpla_          94 EYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA  145 (238)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHH
Confidence            33332211 1122234556788899999999999999999999999999874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=1.7e-25  Score=185.69  Aligned_cols=118  Identities=12%  Similarity=0.032  Sum_probs=91.4

Q ss_pred             CCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------
Q 029723           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (189)
Q Consensus        68 ~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------  138 (189)
                      ..++.++++|.-+ |++++||||||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++.       
T Consensus        27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~  106 (253)
T d3b60a1          27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVA  106 (253)
T ss_dssp             SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHH
T ss_pred             CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchh
Confidence            3456777777765 8999999999999999999999999999 999999999998888889999999999985       


Q ss_pred             HHHHhcCCCCCChHHHHHHHHHHHhhcC-----------CchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHAAIREDISINLGPLEELS-----------NLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~~~~~d~~~v~~~L~~lg-----------L~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +++.++......    .+++.++++..+           +.......+.+||||||||++|+
T Consensus       107 ~n~~~~~~~~~~----~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiA  164 (253)
T d3b60a1         107 NNIAYARTEEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA  164 (253)
T ss_dssp             HHHHTTTTSCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred             hhhhhcCcccCC----HHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHH
Confidence            555555433332    233334443333           33334556778999999999974

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.3e-25  Score=183.79  Aligned_cols=121  Identities=15%  Similarity=0.135  Sum_probs=87.9

Q ss_pred             CCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------
Q 029723           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (189)
Q Consensus        68 ~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------  138 (189)
                      ..+..++++|.-+ |++++|+||||||||||+++|+|+++|+ |+|.|+|.++...+..++++.|+||||++.       
T Consensus        15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~   94 (241)
T d2pmka1          15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII   94 (241)
T ss_dssp             SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHH
T ss_pred             CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCcccc
Confidence            3445667777664 8999999999999999999999999999 999999999998888899999999999975       


Q ss_pred             HHHHhcCCCCCChHHHHH-----HHHHHHhhcC--CchhhccccccCChHHHHhhhcC
Q 029723          139 RAVETGGCPHAAIREDIS-----INLGPLEELS--NLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       139 ~~i~~g~~~~~~~~~d~~-----~v~~~L~~lg--L~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +|+.++.. .....+...     .+.+.++.+.  +.......+.+|||||||||+|+
T Consensus        95 eNi~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalA  151 (241)
T d2pmka1          95 DNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA  151 (241)
T ss_dssp             HHHCTTST-TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHH
T ss_pred             ccccccCc-cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhh
Confidence            55555432 222111111     1112222221  12234456689999999999974

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.90  E-value=8.3e-25  Score=181.80  Aligned_cols=116  Identities=18%  Similarity=0.131  Sum_probs=91.2

Q ss_pred             CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (189)
Q Consensus        69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~  139 (189)
                      .+...+++|.-+ |++++|+|+|||||||||++|+|+++|+ |+|.++|.++...+..++++.|+||+|++.       +
T Consensus        31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~e  110 (255)
T d2hyda1          31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE  110 (255)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred             CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHH
Confidence            456677777764 8999999999999999999999999999 999999999988888889999999999975       6


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723          140 AVETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i  189 (189)
                      |+.++... .    ..+++.++++.+++.+.           ......+||||||||++|+
T Consensus       111 Ni~~g~~~-~----~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iA  166 (255)
T d2hyda1         111 NILLGRPT-A----TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA  166 (255)
T ss_dssp             HHGGGCSS-C----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred             HHhccCcC-C----CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHH
Confidence            77666422 2    23345556666555332           2234567999999999974

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.8e-24  Score=176.00  Aligned_cols=114  Identities=12%  Similarity=0.087  Sum_probs=91.5

Q ss_pred             cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH--------HHHH
Q 029723           72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVE  142 (189)
Q Consensus        72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~  142 (189)
                      .++++|+- +||+++|+|||||||||||++|+|+.+.+|+|.++|+++......+++...+|++|+..        .++.
T Consensus        15 l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   94 (231)
T d1l7vc_          15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLT   94 (231)
T ss_dssp             SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHH
T ss_pred             ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhh
Confidence            45566665 59999999999999999999999987544999999999977777777778899988753        2333


Q ss_pred             hcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          143 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       143 ~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      ++....    ...+.+.++++.+++.+..++++.+||||||||++|+
T Consensus        95 ~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA  137 (231)
T d1l7vc_          95 LHQHDK----TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA  137 (231)
T ss_dssp             HHCSCT----TCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHH
T ss_pred             hccchh----hHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHH
Confidence            332222    2355678899999999999999999999999999874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.87  E-value=1.3e-23  Score=168.46  Aligned_cols=112  Identities=19%  Similarity=0.196  Sum_probs=83.4

Q ss_pred             CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (189)
Q Consensus        71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~  140 (189)
                      +..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.     +++.+++|++|+..        ++
T Consensus        16 vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~~~~~~~~~~~~~t~~~~   90 (200)
T d1sgwa_          16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDY   90 (200)
T ss_dssp             EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSCCCCTTSBHHHH
T ss_pred             EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh-----HhcCcEEEEeecccCCCCcCHHHH
Confidence            456666665 49999999999999999999999999999 99999999874     34568999998753        22


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.+....+ ..+.+..++.++++.+++.+ .++++.+||||||||++|+
T Consensus        91 l~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia  137 (200)
T d1sgwa_          91 LKAVASLY-GVKVNKNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLA  137 (200)
T ss_dssp             HHHHHHHT-TCCCCHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHH
T ss_pred             HHHHHHhc-CCccCHHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHH
Confidence            22211000 01113455777888888764 4577899999999999874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=5.9e-21  Score=160.23  Aligned_cols=101  Identities=17%  Similarity=0.078  Sum_probs=71.1

Q ss_pred             CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (189)
Q Consensus        70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~  140 (189)
                      +...+++|.-+ |++++|+|||||||||||++|+|+++|+ |.|.++|             +|+|++|++.       ++
T Consensus        50 pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~en  116 (281)
T d1r0wa_          50 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKEN  116 (281)
T ss_dssp             EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEEEECSSCCCCSEEHHHH
T ss_pred             eEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEEEEeccccccCceeecc
Confidence            45566666654 9999999999999999999999999999 9999886             3789999864       56


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHhhcC-------Cch----hhccccccCChHHHHhhhcC
Q 029723          141 VETGGCPHAAIREDISINLGPLEELS-------NLF----KADLLLCESGGGNLQTISFI  189 (189)
Q Consensus       141 i~~g~~~~~~~~~d~~~v~~~L~~lg-------L~~----~~~~~~~eLSGGqrq~~~~i  189 (189)
                      +.++....      ...+..+++.+.       +..    .......+|||||||||+|+
T Consensus       117 i~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lA  170 (281)
T d1r0wa_         117 IIFGVSYD------EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA  170 (281)
T ss_dssp             HTTTSCCC------HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHH
T ss_pred             cccccccc------chHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHH
Confidence            65553221      112222222222       221    23344567999999999974

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.92  E-value=2.1e-10  Score=86.28  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=32.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~  119 (189)
                      .++|+|||||||||||++|+++++++ |.+.+.+.+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~   39 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDP   39 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC--
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchH
Confidence            37899999999999999999999998 99998886653

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1.3e-07  Score=69.48  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=29.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      +++|+|++|||||||++.|+..+... .++.+...+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~   40 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   40 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccc
Confidence            78999999999999999999887766 4566665544

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.19  E-value=4.1e-07  Score=67.81  Aligned_cols=36  Identities=19%  Similarity=0.180  Sum_probs=29.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      .+++|+|++|||||||++.|+..|+.. .++.+...+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d   38 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH   38 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            378999999999999999999988876 466665433

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.4e-07  Score=69.48  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=27.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g  115 (189)
                      ..+.|+||+|+|||||++.++..+... ..+.+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~   36 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY   36 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            358899999999999999999998766 4555444

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.96  E-value=3.6e-06  Score=65.12  Aligned_cols=35  Identities=37%  Similarity=0.545  Sum_probs=26.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND  117 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~d  117 (189)
                      +++|+|+.|||||||++.|+..+.....+.+...|
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d   36 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   36 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecC
Confidence            68999999999999999998765433455554443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.94  E-value=2.3e-06  Score=62.85  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=24.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .|.++.|+||+||||||+.+.|+..+.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999987653

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.92  E-value=2.5e-06  Score=64.46  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      |.++.|+||+|||||||++.|....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            78999999999999999999987654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.91  E-value=2.4e-06  Score=62.53  Aligned_cols=28  Identities=32%  Similarity=0.412  Sum_probs=25.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+|.+|.|+|++||||||+.++|+..|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4689999999999999999999998775

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.86  E-value=4e-06  Score=61.68  Aligned_cols=31  Identities=23%  Similarity=0.185  Sum_probs=26.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC-ccEE
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLA  112 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~  112 (189)
                      .+|+|.|++||||||+++.|+..+... .++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~   33 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK   33 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence            689999999999999999999887665 4443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.82  E-value=4.3e-06  Score=61.19  Aligned_cols=25  Identities=32%  Similarity=0.372  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..|+|+|++|||||||.+.|+..+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4699999999999999999987653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=4.3e-06  Score=61.30  Aligned_cols=28  Identities=21%  Similarity=0.275  Sum_probs=24.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..+.++.|+|++||||||+.+.|+..+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3568999999999999999999998763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.75  E-value=7.7e-06  Score=59.70  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..+|.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999999875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=2.6e-06  Score=62.85  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .++.|+|+|||||||||.+|.-++.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4788999999999999999986553

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.73  E-value=7.2e-06  Score=59.47  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .++.|+||+||||||+.+.|+..+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3688999999999999999998654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.73  E-value=7.3e-06  Score=59.08  Aligned_cols=22  Identities=18%  Similarity=0.128  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh
Q 029723           82 FTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .+|.|.|++|||||||.+.|+.
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.73  E-value=8.9e-06  Score=60.60  Aligned_cols=31  Identities=32%  Similarity=0.519  Sum_probs=25.7

Q ss_pred             cCCC-cEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           78 NERA-FTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        78 ~~~G-eivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      ..+| -+|||.|++|||||||.+.|.-.+...
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            3445 579999999999999999998877654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=8.6e-06  Score=68.05  Aligned_cols=41  Identities=22%  Similarity=0.418  Sum_probs=33.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~  120 (189)
                      +.-++||+||+|||||||+..|+..+... -+|.+...|+.+
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss   94 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS   94 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCce
Confidence            45789999999999999999999887766 478777777653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.71  E-value=1.9e-05  Score=61.98  Aligned_cols=48  Identities=21%  Similarity=0.329  Sum_probs=37.1

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE  125 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~  125 (189)
                      ..++.++.|+||+|+||||.+--|+..+... -+|.+...|.......+
T Consensus         3 ~~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~e   51 (207)
T d1okkd2           3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGT   51 (207)
T ss_dssp             CCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchh
Confidence            3467899999999999999988888776655 57888888876554433

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=1.2e-05  Score=64.05  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccC-CccEE
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLA  112 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p-~G~I~  112 (189)
                      +|.+.+|+|++|+|||||++.|.+-..- +|.|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            5889999999999999999999986543 36654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=7.4e-06  Score=61.16  Aligned_cols=28  Identities=39%  Similarity=0.514  Sum_probs=25.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      +|-+|.|+|++|||||||.+.|+..+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999987654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.65  E-value=1.4e-05  Score=58.50  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +++-.+.|+||+||||||+.+.|+-.+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            4567799999999999999999987653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=1.1e-05  Score=66.89  Aligned_cols=28  Identities=36%  Similarity=0.551  Sum_probs=23.0

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHH
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~  102 (189)
                      .++|..+| +.+|+|+|||||||+|.+|+
T Consensus        19 ~i~f~~~~-l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESN-FTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCS-EEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCC-EEEEECCCCCCHHHHHHHHH
Confidence            45665444 78899999999999999985

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.63  E-value=1.2e-05  Score=58.57  Aligned_cols=22  Identities=32%  Similarity=0.341  Sum_probs=19.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhcc
Q 029723           84 VGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +.|+||+||||||+.+.|+-.+
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.3e-05  Score=57.36  Aligned_cols=24  Identities=29%  Similarity=0.520  Sum_probs=21.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+.|+||+||||||+-+.|+-.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999988663

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.60  E-value=1.1e-05  Score=64.86  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.+|+|||||||||+|.+|+-+
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~   47 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWV   47 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            48899999999999999999654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=1.9e-05  Score=61.38  Aligned_cols=27  Identities=30%  Similarity=0.389  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +|.++.|+||+|||||||++.|+-..+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            488999999999999999999876543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.54  E-value=1.7e-05  Score=59.88  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=20.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|++|+|||||++.|+|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5999999999999999999985

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.1e-05  Score=57.22  Aligned_cols=25  Identities=32%  Similarity=0.371  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      |..++|+|++++|||||++.|++.-
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4568999999999999999999763

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.51  E-value=2.1e-05  Score=65.45  Aligned_cols=40  Identities=35%  Similarity=0.424  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~  119 (189)
                      +.-++||+||+|||||||+..|+..+... -+|.|...|+.
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDps   90 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS   90 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccc
Confidence            35779999999999999999999865533 46777766664

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.50  E-value=2.5e-05  Score=58.89  Aligned_cols=26  Identities=19%  Similarity=0.212  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +..+|.|+||+||||||+.+.|+-.+
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999998644

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=3.7e-05  Score=57.88  Aligned_cols=42  Identities=14%  Similarity=0.055  Sum_probs=29.3

Q ss_pred             cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di  118 (189)
                      .....++-+++.|+|++|||||||.+.++..   .+-+.++.-++
T Consensus         7 ~~~~~~~p~liil~G~pGsGKST~a~~l~~~---~~~~~i~~D~~   48 (172)
T d1yj5a2           7 SSLLSPNPEVVVAVGFPGAGKSTFIQEHLVS---AGYVHVNRDTL   48 (172)
T ss_dssp             SCSSCSSCCEEEEECCTTSSHHHHHHHHTGG---GTCEEEEHHHH
T ss_pred             cccCCCCCEEEEEECCCCCCHHHHHHHHHHh---cCCEEEchHHH
Confidence            3334455689999999999999999877542   24455555443

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.50  E-value=1.9e-05  Score=57.93  Aligned_cols=30  Identities=20%  Similarity=0.113  Sum_probs=23.8

Q ss_pred             cccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           76 NFNERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        76 ~f~~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .|.++--.++|||++||||||||+.|++-.
T Consensus         8 ~~~~k~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_           8 GLYKKTGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             TCTTCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344455568899999999999999998854

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.49  E-value=1.9e-05  Score=58.11  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      .++.|.|++||||||+.+.|+..+...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            367899999999999999999888655

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.49  E-value=2.6e-05  Score=57.65  Aligned_cols=23  Identities=39%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +|+|+|++|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999853

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=4.4e-05  Score=60.04  Aligned_cols=40  Identities=25%  Similarity=0.371  Sum_probs=32.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK  121 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~  121 (189)
                      .++.|+||+|+||||.+--|+-.+... -+|.+...|....
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~   50 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA   50 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            789999999999999988888766655 5788888877543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=2.7e-05  Score=61.97  Aligned_cols=33  Identities=21%  Similarity=0.139  Sum_probs=28.2

Q ss_pred             CcccCcccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .-|++.+.....++.|.|||.+||||+||.++-
T Consensus        31 VpNdi~l~~~~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          31 IANPLNLSPQRRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             CCEEEEECSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEECCCceEEEEeccCchhhHHHHHHHHH
Confidence            457788887778999999999999999998753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.48  E-value=4.3e-05  Score=63.48  Aligned_cols=35  Identities=20%  Similarity=0.418  Sum_probs=29.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeec
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTN  116 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~  116 (189)
                      .-+.|.|+.||||||||++|++.++++-.|...+.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd  201 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  201 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccccceeeccc
Confidence            34789999999999999999999988766655543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.46  E-value=1.3e-05  Score=64.02  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccC-CccEE
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLA  112 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p-~G~I~  112 (189)
                      +|.+..|+|++|+|||||++.|.+-+.- +|.|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            5788899999999999999999986543 36554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.46  E-value=4.2e-05  Score=59.87  Aligned_cols=43  Identities=21%  Similarity=0.149  Sum_probs=33.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK  121 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~  121 (189)
                      .+..++.|+||+|+||||.+--|+-.+... -+|.+..-|....
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~   51 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP   51 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            345789999999999999988888766655 5788888776543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=4.1e-05  Score=60.23  Aligned_cols=42  Identities=31%  Similarity=0.401  Sum_probs=32.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE  122 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~  122 (189)
                      ..++.|+||+|+||||.+--|+-.+... -+|.+...|.....
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~g   53 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA   53 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccc
Confidence            4789999999999999887777655544 67888888875543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=3.2e-05  Score=58.39  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=20.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .|+|+|+++|||||||+.|++-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999975

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=3.1e-05  Score=55.30  Aligned_cols=22  Identities=27%  Similarity=0.170  Sum_probs=20.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|++++||||||+.|++-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999984

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.44  E-value=2.7e-05  Score=57.73  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .|+|+|++++|||||++.|+|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999985

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=3e-05  Score=58.61  Aligned_cols=25  Identities=24%  Similarity=0.143  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.++.|+||+||||||+.+.|+..+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998865

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=3e-05  Score=58.35  Aligned_cols=33  Identities=18%  Similarity=0.141  Sum_probs=25.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV  114 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~  114 (189)
                      .++.++|.+|||||||.+.|+..+... -.+.+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~   36 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREF   36 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            368999999999999999999876543 334333

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=3.5e-05  Score=56.81  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=20.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      +|+|+|.+++|||||++.|+|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999974

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.41  E-value=4.5e-05  Score=57.30  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=22.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++|-.+.|+||+||||||+.+.|+-.+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence            357667799999999999999998543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.40  E-value=2e-05  Score=58.93  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=19.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhc
Q 029723           84 VGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      |+|+|++++|||||++.|++.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999874

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.38  E-value=4.3e-05  Score=56.87  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=20.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      +|+|+|.+|+|||||++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999985

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.38  E-value=4e-05  Score=55.19  Aligned_cols=23  Identities=30%  Similarity=0.241  Sum_probs=20.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|.+|+||||||+.+++-.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999998753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.38  E-value=3.9e-05  Score=59.90  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      ..+.|.||+|||||||.+.|++.+..
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            45889999999999999999997753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=4e-05  Score=58.64  Aligned_cols=25  Identities=24%  Similarity=0.626  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+|||.|++|||||||.+.|.-.+.
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5799999999999999999977654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=4e-05  Score=58.01  Aligned_cols=23  Identities=39%  Similarity=0.590  Sum_probs=20.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhccc
Q 029723           84 VGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      |.|+||+|||||||++.|+...+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999977543

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.37  E-value=4.6e-05  Score=57.66  Aligned_cols=33  Identities=15%  Similarity=0.061  Sum_probs=25.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEee
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT  115 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g  115 (189)
                      ++.++.|+||+||||||+.+.|+..+   |-+.+..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~---g~~~is~   39 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY---GYTHLST   39 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT---CCEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh---CCeeEec
Confidence            46789999999999999999998754   3444443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.37  E-value=4.2e-05  Score=54.80  Aligned_cols=22  Identities=23%  Similarity=0.187  Sum_probs=19.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|++|||||||++.+++-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3679999999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=4.7e-05  Score=57.20  Aligned_cols=23  Identities=22%  Similarity=0.190  Sum_probs=20.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +|.|+||+||||||+.+.|+..+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998754

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.35  E-value=4.9e-05  Score=56.25  Aligned_cols=22  Identities=18%  Similarity=0.175  Sum_probs=19.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhcc
Q 029723           84 VGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +.|+||+||||||+.+.|+-.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999997755

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.35  E-value=4.9e-05  Score=55.80  Aligned_cols=28  Identities=29%  Similarity=0.366  Sum_probs=24.0

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      |..+.-.+.|+|.+|||||||++.|.+-
T Consensus        11 ~~~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          11 FNHQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             HTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             hCCCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            4455567999999999999999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.34  E-value=3e-05  Score=57.76  Aligned_cols=21  Identities=33%  Similarity=0.561  Sum_probs=19.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhc
Q 029723           84 VGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      |+|+|.+++|||||++.|+|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999875

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.33  E-value=5.1e-05  Score=59.60  Aligned_cols=42  Identities=24%  Similarity=0.456  Sum_probs=29.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE  122 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~  122 (189)
                      ..++.|+||+|+||||.+--|+-.++.. .+|.+...|.....
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~g   54 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPA   54 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccc
Confidence            4789999999999999988787666544 68888888876543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.31  E-value=4.4e-05  Score=57.42  Aligned_cols=23  Identities=22%  Similarity=0.163  Sum_probs=20.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++.|+||+||||||+.+.|+--+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999997654

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=5.8e-05  Score=57.41  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=19.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhcc
Q 029723           84 VGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      |.|+||+|||||||++.|+...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999987653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.28  E-value=6.5e-05  Score=56.09  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999998765

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.27  E-value=7.4e-05  Score=55.50  Aligned_cols=24  Identities=33%  Similarity=0.391  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      +-.|+|+|.+++|||||++.|++.
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            456999999999999999999874

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.27  E-value=5.3e-05  Score=55.99  Aligned_cols=22  Identities=41%  Similarity=0.477  Sum_probs=20.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhcc
Q 029723           84 VGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +.|+|++||||||+.++|+..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999998866

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=7.3e-05  Score=56.57  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ..+.|+||+|+|||||++.|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999998854

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00011  Score=56.04  Aligned_cols=30  Identities=27%  Similarity=0.227  Sum_probs=26.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY  109 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G  109 (189)
                      +|.+|+|-|+.||||||+++.|...+...|
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g   30 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLG   30 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            588999999999999999999998776543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00015  Score=55.99  Aligned_cols=35  Identities=17%  Similarity=0.088  Sum_probs=28.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCCc-cEEE
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAA  113 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G-~I~i  113 (189)
                      .+|.+|+|-|+.||||||+.+.|...+...| .+.+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~   36 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL   36 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            3688999999999999999999998776553 3433

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=4.5e-05  Score=55.99  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .-.|+|+|++++||||||+.|++.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456999999999999999999875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=9.4e-05  Score=55.98  Aligned_cols=24  Identities=38%  Similarity=0.652  Sum_probs=21.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ||+|.||+||||||+-+.|+.-+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            899999999999999999987653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.18  E-value=8e-05  Score=54.34  Aligned_cols=23  Identities=17%  Similarity=0.073  Sum_probs=20.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|++|||||||++.|++-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999998854

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00011  Score=54.10  Aligned_cols=25  Identities=28%  Similarity=0.271  Sum_probs=22.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .+|+++.|.||+|||||||+..++.
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            4799999999999999999887764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=9e-05  Score=55.07  Aligned_cols=23  Identities=13%  Similarity=0.033  Sum_probs=19.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999998654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.17  E-value=7.6e-05  Score=55.28  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.|+|++||||||+-+.|+-.+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            36699999999999999998755

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.14  E-value=9.6e-05  Score=55.46  Aligned_cols=28  Identities=36%  Similarity=0.568  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+.-+|+|-|+.|||||||++.|...+.
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3456899999999999999999887663

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=8.6e-05  Score=54.70  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=20.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhccc
Q 029723           84 VGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +.|+|++||||||+-++|+..+.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56889999999999999987663

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.14  E-value=9.5e-05  Score=55.51  Aligned_cols=22  Identities=32%  Similarity=0.643  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh
Q 029723           82 FTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~G  103 (189)
                      -++||.|++||||||+.+.|.-
T Consensus         4 ~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=3.5e-05  Score=55.91  Aligned_cols=22  Identities=27%  Similarity=0.273  Sum_probs=20.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -++|+|.+++|||||++.|+|.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999985

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.14  E-value=0.00029  Score=54.26  Aligned_cols=27  Identities=33%  Similarity=0.427  Sum_probs=24.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      ..+.|.||+|+||||+++.|+..++..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~   70 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDK   70 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcc
Confidence            578899999999999999999988754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.13  E-value=0.00011  Score=54.75  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.|+||+||||||+.+.|+..+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998655

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.12  E-value=0.00011  Score=57.89  Aligned_cols=29  Identities=21%  Similarity=0.156  Sum_probs=23.7

Q ss_pred             cccCcccCCCcEEEEEcCCCchHHHHHHHHH
Q 029723           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~  102 (189)
                      -|++.+.  .+++.|.|||.+||||+||.|+
T Consensus        28 pNdi~~~--~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          28 PNDLEMA--HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEES--SCEEEEESCSSSSHHHHHHHHH
T ss_pred             cceEEeC--CcEEEEECCCccccchhhhhhH
Confidence            3666665  3588999999999999999775

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00012  Score=54.57  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999998754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.11  E-value=0.00011  Score=55.04  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=20.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -++|+|.+.||||||++.|++.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            3899999999999999999974

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00013  Score=55.34  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=20.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .|+|+|++++||||||+.|++-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00023  Score=58.72  Aligned_cols=38  Identities=24%  Similarity=0.390  Sum_probs=29.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDI  118 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di  118 (189)
                      -.+|||.|++|||||||.+.|..++..  . -.|.+...|-
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~  120 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG  120 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeee
Confidence            379999999999999999999988752  2 3455554443

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00013  Score=56.71  Aligned_cols=25  Identities=28%  Similarity=0.295  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..+.|.||+|+||||++++|+..+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999998654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.03  E-value=0.00021  Score=54.23  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .-.+.|+||+||||||+.+.|+-.+
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHH
Confidence            4467899999999999999998754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.03  E-value=0.00016  Score=55.12  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +++|-||+||||||+.+.|+.-+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999998754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.02  E-value=0.00015  Score=56.08  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=25.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di  118 (189)
                      .+.|.||+|+|||||.++|+..+... .+.+++.+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~-~~~~~~~~~   71 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVL   71 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCC-EEEEETTTC
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCC-cccccCccc
Confidence            37799999999999999999877644 223444433

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00021  Score=55.32  Aligned_cols=31  Identities=32%  Similarity=0.223  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCcc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYS  110 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~  110 (189)
                      +|.+|+|-|+-||||||+++.|...+...+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~   32 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK   32 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCE
Confidence            6899999999999999999999988765543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.99  E-value=0.00014  Score=56.01  Aligned_cols=24  Identities=42%  Similarity=0.544  Sum_probs=21.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+.|.||+|+|||||+++|+..+.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            478999999999999999998654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.00018  Score=55.74  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=21.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      -+.|.||+|+|||||.++|++.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            367999999999999999998764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.95  E-value=0.0002  Score=52.30  Aligned_cols=22  Identities=18%  Similarity=0.187  Sum_probs=19.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|++|+|||||++.+++-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999988764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.94  E-value=0.00018  Score=57.39  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.+.|+|.+|+|||||++.|+|..
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCcHHHHHHHHhCCC
Confidence            468999999999999999999863

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00017  Score=55.27  Aligned_cols=22  Identities=55%  Similarity=0.659  Sum_probs=20.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhcc
Q 029723           84 VGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +.|.||+|+|||||+++|+..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999999865

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00014  Score=55.87  Aligned_cols=27  Identities=22%  Similarity=0.404  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +..+|+|-|+-||||||+++.|...+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            357899999999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.91  E-value=0.00045  Score=51.97  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=26.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCc-cEEEee
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVT  115 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G-~I~i~g  115 (189)
                      +|+|-|.-||||||+++.|...+...| .|.+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~   35 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA   35 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            688999999999999999998776553 455443

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.91  E-value=0.00025  Score=54.85  Aligned_cols=40  Identities=23%  Similarity=0.310  Sum_probs=29.7

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC---ccEEEeecC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK---YSLAAVTND  117 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~---G~I~i~g~d  117 (189)
                      ..+|.++-|.|.+|||||||.+.|...+...   -.+.++|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~   63 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   63 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence            3468999999999999999999998655322   234555543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00024  Score=52.19  Aligned_cols=21  Identities=43%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++|+|++|+|||||++.+++
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            378999999999999999876

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.90  E-value=0.00022  Score=54.49  Aligned_cols=21  Identities=33%  Similarity=0.710  Sum_probs=19.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHH
Q 029723           82 FTVGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~  102 (189)
                      .++||+|+.||||||+.+++.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999775

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.86  E-value=9.6e-05  Score=60.64  Aligned_cols=36  Identities=14%  Similarity=0.355  Sum_probs=25.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      -+|||.|++|||||||.+.|..+++.. -++.+...|
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~D   41 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   41 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCC
Confidence            489999999999999999998887654 344454444

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.00026  Score=51.98  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|++|+|||||++.+++-
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4889999999999999988753

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.83  E-value=0.00038  Score=52.18  Aligned_cols=29  Identities=31%  Similarity=0.473  Sum_probs=25.4

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..+|.++.|.|+=|||||||.|.++.-+-
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            35789999999999999999999987653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.82  E-value=0.00032  Score=53.99  Aligned_cols=27  Identities=26%  Similarity=0.142  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+.++.|.||.|+|||||++.++..+.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            567899999999999999998876543

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.82  E-value=0.00021  Score=52.44  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.++|+|++|+|||||++.+++-
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999999774

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0003  Score=51.97  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|++|+|||||++.+++-
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988763

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00034  Score=53.64  Aligned_cols=22  Identities=27%  Similarity=0.632  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh
Q 029723           82 FTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++||+|..||||||+.+++..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4899999999999999998864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00028  Score=51.57  Aligned_cols=22  Identities=32%  Similarity=0.450  Sum_probs=19.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|++|+||||||+.+++-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.80  E-value=0.00017  Score=55.92  Aligned_cols=24  Identities=38%  Similarity=0.360  Sum_probs=20.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ++.|.||+|+||||+++.++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            455679999999999999998763

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00032  Score=51.19  Aligned_cols=20  Identities=25%  Similarity=0.521  Sum_probs=18.2

Q ss_pred             EEEEcCCCchHHHHHHHHHh
Q 029723           84 VGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~G  103 (189)
                      ++|+|++|+|||||++.++.
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998775

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.79  E-value=0.00033  Score=54.49  Aligned_cols=23  Identities=30%  Similarity=0.268  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -+++|+|.+.||||||++.|++.
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhh
Confidence            46999999999999999999874

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.76  E-value=0.00061  Score=57.70  Aligned_cols=43  Identities=21%  Similarity=0.283  Sum_probs=33.1

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~  119 (189)
                      ...+.-++.|.||.||||||+|..++..+... ..|.-.+.++.
T Consensus       154 ~~~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE  197 (401)
T d1p9ra_         154 IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE  197 (401)
T ss_dssp             HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred             HhhhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcc
Confidence            33456788999999999999999999877544 66766665553

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.76  E-value=0.00046  Score=53.01  Aligned_cols=39  Identities=21%  Similarity=0.136  Sum_probs=28.6

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcc-cCCccEEEeec
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFL-RDKYSLAAVTN  116 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll-~p~G~I~i~g~  116 (189)
                      -++|.++.|.|++|||||||+.-++--. +....+.+...
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~   62 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY   62 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec
Confidence            3478999999999999999987776543 33355555543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00035  Score=50.96  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.++|.+|+|||||++.++.-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.71  E-value=0.00035  Score=57.02  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=27.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di  118 (189)
                      +...+.|+||+|||||+|.++|+..+.. --+.++...+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~-~~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcccc-chhccccccc
Confidence            3345669999999999999999997642 2355555554

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00039  Score=51.62  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=19.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|++|+|||||++.+++-
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999998863

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00036  Score=52.94  Aligned_cols=25  Identities=28%  Similarity=0.278  Sum_probs=21.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      ++|.++-|.|++|||||||...++-
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999999877653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00042  Score=50.67  Aligned_cols=21  Identities=38%  Similarity=0.610  Sum_probs=19.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++|+|.+|+|||||++.+++
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999998876

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00041  Score=51.07  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|++|+|||||++.+++-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999987754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.68  E-value=0.00022  Score=58.30  Aligned_cols=25  Identities=36%  Similarity=0.444  Sum_probs=22.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      -+.|+|++|+|||||++.|..+|++
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCCC
Confidence            4789999999999999999998854

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.67  E-value=0.00046  Score=51.97  Aligned_cols=40  Identities=20%  Similarity=0.162  Sum_probs=27.9

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHH-h-cccCCccEEEeecC
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALC-K-FLRDKYSLAAVTND  117 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~-G-ll~p~G~I~i~g~d  117 (189)
                      .++|+++.|.|++|+|||||+.-++ . .......+.+...+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e   64 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE   64 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence            4589999999999999999975443 3 33323456665543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00041  Score=50.88  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh
Q 029723           82 FTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~G  103 (189)
                      ..+.|+|.+|+||||||+.+++
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999998765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.66  E-value=0.00028  Score=51.93  Aligned_cols=29  Identities=21%  Similarity=0.256  Sum_probs=23.2

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      |..+.-.+.|+|++|+||||||+.++.-.
T Consensus         8 ~~~k~~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_           8 FGNKEMRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             HTTCCEEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             hCCCeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            44455568899999999999999997543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00048  Score=50.25  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|.+|+|||||++.+++-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999998864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.00041  Score=58.78  Aligned_cols=23  Identities=26%  Similarity=0.563  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      --|+|+|.+|+|||||+|.|+|.
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            44999999999999999999984

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00044  Score=50.43  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh
Q 029723           82 FTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~G  103 (189)
                      ..++|+|+.|+||||||+.+++
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3588999999999999999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00045  Score=50.67  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|.+|+|||||++.++.-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998863

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.62  E-value=0.0005  Score=51.01  Aligned_cols=22  Identities=41%  Similarity=0.397  Sum_probs=19.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|.+|+|||||++.+++-
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.61  E-value=0.00047  Score=54.59  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      -+.|.||+|||||+|.++|+..+.
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECcCCCCHHHHHHHHhhccc
Confidence            477999999999999999998754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00056  Score=49.64  Aligned_cols=21  Identities=24%  Similarity=0.275  Sum_probs=19.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++|+|..|+||||||+.+++
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999885

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00054  Score=49.97  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|.+|+|||||++.+++-
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.58  E-value=0.00056  Score=49.93  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=19.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++|+|.+|+||||||+.++.
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999875

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00045  Score=52.99  Aligned_cols=23  Identities=35%  Similarity=0.348  Sum_probs=20.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhccc
Q 029723           84 VGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +.|.||+|+||||++++|+..+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            67999999999999999987654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0006  Score=49.98  Aligned_cols=23  Identities=30%  Similarity=0.283  Sum_probs=20.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|.+|+|||||++.+++..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            47899999999999999998864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.00062  Score=49.34  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .+.|+|..|+|||||++.++.
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.53  E-value=0.0004  Score=51.38  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=21.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      +--.+.|+|++|+|||||++.+++-
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999998754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.0005  Score=52.55  Aligned_cols=23  Identities=39%  Similarity=0.566  Sum_probs=20.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhccc
Q 029723           84 VGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +.|.||+|+|||||+++|+..+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            67999999999999999998654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00058  Score=50.12  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=19.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++|+|..|+||||||+.+++
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998875

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.00057  Score=51.37  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|+.|+|||||++.++.-
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            4889999999999999988753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.00049  Score=53.07  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhcc
Q 029723           84 VGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +.|.||+|+||||+.++++..+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            6799999999999999998754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00066  Score=49.54  Aligned_cols=21  Identities=38%  Similarity=0.548  Sum_probs=18.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .+.|+|.+|+||||||+.+++
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0011  Score=51.42  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=26.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di  118 (189)
                      ++.|.|.-||||||||+-|+... +.-++.|.-+++
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~-~~~riaVI~Ne~   39 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ-HGYKIAVIENEF   39 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC-CCCCEEEECSSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC-CCCcEEEEEecc
Confidence            67899999999999999998742 223566665554

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=96.50  E-value=0.00065  Score=54.77  Aligned_cols=47  Identities=26%  Similarity=0.204  Sum_probs=29.5

Q ss_pred             EEEEEcCCCchHHHHHHHHH---hcccCCccEEEeecCCCCCchHHHhhhc
Q 029723           83 TVGIGGPVGTGKTALMLALC---KFLRDKYSLAAVTNDIFTKEDGEFLMRN  130 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~---Gll~p~G~I~i~g~di~~~~~~~~~~~i  130 (189)
                      -++|+|..|+|||||+..|+   |.+...|++. .+..+....+.+..|++
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~   53 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRT   53 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCC
Confidence            48999999999999999984   4433225543 23333334455555543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.50  E-value=0.00058  Score=54.19  Aligned_cols=24  Identities=42%  Similarity=0.448  Sum_probs=21.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      -+.|.||+|+|||+|.++|+..+.
T Consensus        44 giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEecCCCCChhHHHHHHHHHcC
Confidence            478999999999999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00069  Score=49.76  Aligned_cols=21  Identities=33%  Similarity=0.379  Sum_probs=18.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .+.|+|++|+|||||++.++.
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999987765

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.48  E-value=0.00064  Score=56.35  Aligned_cols=40  Identities=25%  Similarity=0.185  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~  120 (189)
                      .-++.|+||+|+|||.|.+.|++.+... --+.+.+.++..
T Consensus       123 ~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~  163 (321)
T d1w44a_         123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS  163 (321)
T ss_dssp             SEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSST
T ss_pred             CceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhh
Confidence            3456678999999999999999987543 457788887754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.48  E-value=0.00063  Score=52.09  Aligned_cols=24  Identities=33%  Similarity=0.422  Sum_probs=20.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHH
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~  102 (189)
                      ++|.++.|.||+|||||||.--++
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHH
Confidence            468999999999999999977554

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.00056  Score=54.64  Aligned_cols=36  Identities=31%  Similarity=0.278  Sum_probs=26.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di  118 (189)
                      ..+.|.||+|||||+|.+.|+..+... -+.+...++
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~~~-~~~i~~~~l   81 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAKVP-FFTISGSDF   81 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCC-EEEECSCSS
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcCCC-EEEEEhHHh
Confidence            457799999999999999999876432 234444444

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00071  Score=49.91  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|..|+|||||++.+++-
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988763

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00069  Score=49.89  Aligned_cols=22  Identities=32%  Similarity=0.308  Sum_probs=19.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|.+|+|||||++.++.-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00089  Score=49.28  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=20.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.|+|..|+|||||++.+++..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            47899999999999999998753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.00067  Score=55.35  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+|||-|+.|||||||.+.|.-.+
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEeECCCCCCHHHHHHHHHHHH
Confidence            689999999999999998886654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00079  Score=49.29  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=19.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhc
Q 029723           84 VGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      +.|+|+.|+|||||++.++.-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999863

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00075  Score=49.66  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|.+|+|||||++.++.-
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999988753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00097  Score=50.82  Aligned_cols=26  Identities=35%  Similarity=0.323  Sum_probs=22.7

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++|.++.|.|++|||||||...++-
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999887763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.39  E-value=0.00084  Score=48.99  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|..|+|||||++.+++-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999987754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00089  Score=48.96  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|..|+|||||++.++.-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998843

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.34  E-value=0.00087  Score=50.53  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=22.4

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      -.+|+++.|.|++|+|||||+.-++-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            34789999999999999999877763

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00093  Score=49.50  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=19.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|.+|+||||||+.++.-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999988763

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.00094  Score=52.94  Aligned_cols=24  Identities=33%  Similarity=0.393  Sum_probs=21.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      -+.|.||+|+|||+|+++|+..+.
T Consensus        40 giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eeEEecCCCCCchHHHHHHHHHhC
Confidence            377999999999999999999653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.00057  Score=50.28  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=9.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .+.|+|..|+||||||+.+++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987775

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.30  E-value=0.0012  Score=51.80  Aligned_cols=39  Identities=8%  Similarity=0.061  Sum_probs=28.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHh-cccCC-ccEEEeecC
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCK-FLRDK-YSLAAVTND  117 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~G-ll~p~-G~I~i~g~d  117 (189)
                      .+|+++.|.|++|+|||||+.-|+- +.... -.|.+...+
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            4699999999999999999877764 32223 456665544

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.001  Score=48.59  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=18.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++|+|+.|+|||||++.++.
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998765

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.29  E-value=0.00089  Score=54.07  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +-.+||||.+-||||||+++|++.-
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCC
Confidence            3459999999999999999999863

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.28  E-value=0.0012  Score=49.75  Aligned_cols=22  Identities=41%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhcc
Q 029723           84 VGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++|+|...+|||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            6899999999999999999853

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.22  E-value=0.00099  Score=53.90  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhcc
Q 029723           84 VGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      +||||.+-+|||||+++|++.-
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            8999999999999999998863

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0012  Score=48.01  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|.+|+||||||+.++.-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.00093  Score=53.27  Aligned_cols=25  Identities=36%  Similarity=0.335  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .-+.|.||+|+|||+|+++|++.+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHhC
Confidence            4577999999999999999999764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.00062  Score=50.08  Aligned_cols=21  Identities=29%  Similarity=0.324  Sum_probs=18.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++|+|++|+||||||+.++.
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0013  Score=48.17  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh
Q 029723           82 FTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~G  103 (189)
                      ..+.|+|..|+||||||+.+++
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3478999999999999998876

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.17  E-value=0.0013  Score=48.15  Aligned_cols=21  Identities=38%  Similarity=0.452  Sum_probs=18.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .+.|+|..|+|||||++.++.
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998765

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.14  E-value=0.0013  Score=53.23  Aligned_cols=29  Identities=17%  Similarity=0.258  Sum_probs=20.7

Q ss_pred             EEEEEcCCCchHHHHHHHHH---hcccCCccE
Q 029723           83 TVGIGGPVGTGKTALMLALC---KFLRDKYSL  111 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~---Gll~p~G~I  111 (189)
                      -++|+|..|||||||+..|+   |.+...|++
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v   39 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEV   39 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC----
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccce
Confidence            48999999999999999984   555443555

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0013  Score=48.84  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=18.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .+.|+|..|+|||||++.++.
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            388999999999999998775

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0023  Score=51.30  Aligned_cols=51  Identities=20%  Similarity=0.221  Sum_probs=33.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc-CCcc-EEEeecCCCCCchHHHhhhcee
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYS-LAAVTNDIFTKEDGEFLMRNGA  132 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~-p~G~-I~i~g~di~~~~~~~~~~~iG~  132 (189)
                      +.|.++-|.||+|||||||+-.++.... +.+. ++|+...-.  . .++.+.+|.
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~--~-~~~a~~~Gv  104 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL--D-PIYARKLGV  104 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHTTC
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccccc--C-HHHHHHhCC
Confidence            4679999999999999999877776544 4455 455554432  2 234445553

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.08  E-value=0.0016  Score=50.09  Aligned_cols=22  Identities=14%  Similarity=0.066  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh
Q 029723           82 FTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .++||.|+-||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999854

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0017  Score=48.21  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .++|+|..|+||||||+.+++-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.0016  Score=48.22  Aligned_cols=27  Identities=11%  Similarity=0.112  Sum_probs=21.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc--ccCC-c
Q 029723           83 TVGIGGPVGTGKTALMLALCKF--LRDK-Y  109 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl--l~p~-G  109 (189)
                      .+.|+|.+|+||||||+.+.-.  ..|+ |
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            4789999999999999998432  2367 6

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.01  E-value=0.0018  Score=54.24  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=25.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ++..++.|.||+|+|||||.+.|+..+.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3467999999999999999999999875

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.00  E-value=0.00064  Score=52.27  Aligned_cols=20  Identities=50%  Similarity=0.542  Sum_probs=18.4

Q ss_pred             EEEEcCCCchHHHHHHHHHh
Q 029723           84 VGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~G  103 (189)
                      ++|+|..++|||||+..|+.
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            89999999999999999963

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0017  Score=49.79  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcccC
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLRD  107 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~p  107 (189)
                      .+++|=|+-||||||+++.|...+..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            57899999999999999999976643

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0017  Score=48.47  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=19.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|..|+|||||++.++.-
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999887754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.96  E-value=0.0028  Score=46.33  Aligned_cols=27  Identities=11%  Similarity=0.079  Sum_probs=22.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCC-c
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDK-Y  109 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G  109 (189)
                      .+.|+|..|+||||||+.+.....|+ |
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence            37899999999999999987765665 5

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.0017  Score=48.08  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=18.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHh
Q 029723           83 TVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .+.|+|.+|+|||||++.++.
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987765

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.94  E-value=0.0018  Score=51.62  Aligned_cols=23  Identities=43%  Similarity=0.560  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -.+||||-+-+|||||+++|++.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHCC
Confidence            35899999999999999999965

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.92  E-value=0.0028  Score=50.93  Aligned_cols=52  Identities=23%  Similarity=0.244  Sum_probs=35.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhcee
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~  132 (189)
                      +.|.++-|.||+|||||||+-.++...+.. |.+.|....- +.++ ++.+.+|+
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~-~~~~-~~a~~~Gv  107 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH-ALDP-VYARALGV  107 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-CCCH-HHHHHTTC
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc-cCCH-HHHHHhCC
Confidence            568999999999999999988887765534 5555544332 2222 45555554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.91  E-value=0.0029  Score=50.87  Aligned_cols=51  Identities=20%  Similarity=0.204  Sum_probs=33.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc-CCccE-EEeecCCCCCchHHHhhhcee
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYSL-AAVTNDIFTKEDGEFLMRNGA  132 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~-p~G~I-~i~g~di~~~~~~~~~~~iG~  132 (189)
                      +.|.++-|.||+|+|||||+-.++...+ ..+.+ +|+...-  . ..++.+.+|.
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~--~-~~e~a~~~Gv  110 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA--L-DPDYAKKLGV  110 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC--C-CHHHHHHHTC
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCcc--C-CHHHHHHhCC
Confidence            4689999999999999999766665444 44554 4454442  2 2345555553

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.88  E-value=0.0017  Score=55.70  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=21.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      =+.||||+|||||-|.+.|++++.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999874

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.86  E-value=0.0021  Score=49.44  Aligned_cols=28  Identities=11%  Similarity=0.051  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHH-hcccCC-c
Q 029723           82 FTVGIGGPVGTGKTALMLALC-KFLRDK-Y  109 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~-Gll~p~-G  109 (189)
                      ..+.|+|.+|+||||||+.+. +-..|+ |
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            357899999999999999875 334466 6

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0027  Score=49.51  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=22.0

Q ss_pred             ccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           77 FNERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      |- +|+++.|.|++|+|||||+-.|+-
T Consensus        26 ~~-pg~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          26 MV-AGTVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EE-TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cc-CCcEEEEEeCCCCCHHHHHHHHHH
Confidence            44 489999999999999999877654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.75  E-value=0.0026  Score=48.23  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -++|+|...+|||||+..|++..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            48999999999999999999854

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.002  Score=51.95  Aligned_cols=24  Identities=38%  Similarity=0.299  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+|+|+||-++||||||+.|++..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            589999999999999999999864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.72  E-value=0.0028  Score=48.00  Aligned_cols=26  Identities=31%  Similarity=0.402  Sum_probs=21.3

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .-.|.-+.|.|++|+|||||...+..
T Consensus        11 ~~~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          11 DIYGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            34577899999999999999877654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.53  E-value=0.0033  Score=47.67  Aligned_cols=26  Identities=27%  Similarity=0.299  Sum_probs=21.3

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .-.|.-+.|.|++|+|||||...+..
T Consensus        12 ~~~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          12 EVFGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            33577899999999999999877654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.0037  Score=50.86  Aligned_cols=28  Identities=25%  Similarity=0.253  Sum_probs=24.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+|+..+|+|++|+|||||+..|+.-..
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            3699999999999999999999987554

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.49  E-value=0.0033  Score=50.27  Aligned_cols=23  Identities=13%  Similarity=0.225  Sum_probs=21.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .++|+|.-.|||||||++|+|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999964

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.0036  Score=45.84  Aligned_cols=22  Identities=14%  Similarity=0.208  Sum_probs=19.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      .+.|+|..|+||||||+.++.-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.0036  Score=50.99  Aligned_cols=25  Identities=36%  Similarity=0.499  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .++.++||+|+|||.|.+.|+..+.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCcchhHHHHHHHHhhcc
Confidence            4688999999999999999998864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.30  E-value=0.0038  Score=49.62  Aligned_cols=22  Identities=14%  Similarity=0.237  Sum_probs=20.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhcc
Q 029723           84 VGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ++|+|.-.|||||||++|+|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999964

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.29  E-value=0.0045  Score=46.50  Aligned_cols=26  Identities=35%  Similarity=0.388  Sum_probs=21.0

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~G  103 (189)
                      .-.|.-+.|.|++|+|||||.-.++.
T Consensus        12 ~~~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          12 DVYGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            34577899999999999998866654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.20  E-value=0.0074  Score=49.86  Aligned_cols=34  Identities=12%  Similarity=0.101  Sum_probs=27.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCccEEEeec
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTN  116 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~  116 (189)
                      .|.|=|+-|+||||+++.|...+...+.+.+...
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~E   41 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPE   41 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECC
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCCeEEEeC
Confidence            4788999999999999999998876655655543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.14  E-value=0.0061  Score=48.44  Aligned_cols=25  Identities=20%  Similarity=0.305  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      +..+++|+|.-|.|||||.+.++.-
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3578999999999999999998653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.0051  Score=46.90  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      -.+.|.||+|+|||||.+.++..+
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhc
Confidence            458899999999999999998855

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.07  E-value=0.0071  Score=43.17  Aligned_cols=37  Identities=19%  Similarity=0.340  Sum_probs=28.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHH-hcccCC--ccEEEee
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALC-KFLRDK--YSLAAVT  115 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~-Gll~p~--G~I~i~g  115 (189)
                      ++|.++-+.|-+|||||||.++|. .+++-.  -.|.+..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~   43 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFE   43 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECC
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEec
Confidence            579999999999999999999985 555544  2566543

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.005  Score=51.09  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHH-hcccCC
Q 029723           82 FTVGIGGPVGTGKTALMLALC-KFLRDK  108 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~-Gll~p~  108 (189)
                      .-+.|+|++|||||++|+.|+ .++...
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g   78 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRG   78 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCC
Confidence            348899999999999987554 444433

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.0053  Score=47.45  Aligned_cols=25  Identities=32%  Similarity=0.356  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      -.+.|.||+|+||||+.++++..+.
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHhc
Confidence            3467899999999999999987553

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.04  E-value=0.0051  Score=46.82  Aligned_cols=21  Identities=48%  Similarity=0.597  Sum_probs=19.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhc
Q 029723           84 VGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ++|+|...+|||||++.|+++
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            799999999999999999864

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.99  E-value=0.011  Score=47.22  Aligned_cols=27  Identities=30%  Similarity=0.303  Sum_probs=24.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      --++.|.||.++|||||+.+|+.++ ++
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~l-g~  130 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTV-PF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS-SC
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHh-cc
Confidence            4688999999999999999999988 44

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.79  E-value=0.0075  Score=46.31  Aligned_cols=23  Identities=43%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhccc
Q 029723           84 VGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +.|.||+|+|||-|+++++..+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Confidence            67999999999999999987654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.72  E-value=0.013  Score=47.14  Aligned_cols=27  Identities=30%  Similarity=0.470  Sum_probs=23.3

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      ..+|+.++|+|+.|+|||||+..|+.-
T Consensus        65 igkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          65 YAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            347999999999999999998887654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.44  E-value=0.0066  Score=47.49  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             EEEEEcCCCchHHHHH-HHHHhccc---CC-ccEEEee
Q 029723           83 TVGIGGPVGTGKTALM-LALCKFLR---DK-YSLAAVT  115 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL-~~L~Gll~---p~-G~I~i~g  115 (189)
                      -+.|+|++||||||+| ..+.-++.   .. ..|.+..
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt   53 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVT   53 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             CEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEe
Confidence            3679999999999754 44433332   12 4676664

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.44  E-value=0.012  Score=48.52  Aligned_cols=35  Identities=14%  Similarity=0.207  Sum_probs=28.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d  117 (189)
                      .|.|=|+-||||||+++.|...+... ..+.+...+
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP   42 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEP   42 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCc
Confidence            58899999999999999999988766 456665544

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.019  Score=47.48  Aligned_cols=22  Identities=36%  Similarity=0.336  Sum_probs=18.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHH
Q 029723           81 AFTVGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~  102 (189)
                      +.++.|.||+|+||||++..+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            5689999999999999885443

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.29  E-value=0.01  Score=45.53  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .-+.|||++|.|||+++.-|+..+
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            457899999999999999998755

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.01  Score=47.61  Aligned_cols=24  Identities=29%  Similarity=0.245  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhcc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .-+.|||++|+|||+|+.-++..+
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            457799999999999999998754

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=94.12  E-value=0.015  Score=46.69  Aligned_cols=38  Identities=24%  Similarity=0.034  Sum_probs=27.3

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g  115 (189)
                      ..+|+.++|+|++|+|||+|+..+.-....+ .-+.+.+
T Consensus        64 ig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~~  102 (276)
T d1fx0a3          64 VGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVA  102 (276)
T ss_dssp             CBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEE
T ss_pred             ccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeeee
Confidence            3479999999999999999998765544444 3333433

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.90  E-value=0.016  Score=47.70  Aligned_cols=32  Identities=31%  Similarity=0.338  Sum_probs=22.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCCccEEEee
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT  115 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g  115 (189)
                      .|.|=|+-|||||||++.|...+...+ |.+..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~~~-v~~~~   37 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSRDD-IVYVP   37 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC----CC-EEEEC
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCCCC-eEEec
Confidence            478999999999999999987765433 44433

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.86  E-value=0.011  Score=46.76  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=20.2

Q ss_pred             EEEEEcCCCchHHHHH-HHHHhccc---CC-ccEEEee
Q 029723           83 TVGIGGPVGTGKTALM-LALCKFLR---DK-YSLAAVT  115 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL-~~L~Gll~---p~-G~I~i~g  115 (189)
                      .+.|.|+.||||||.| ..++-++.   .. .+|.+..
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt   63 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAIT   63 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEE
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEe
Confidence            3668899999999765 33333322   12 4566654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.77  E-value=0.015  Score=44.57  Aligned_cols=19  Identities=32%  Similarity=0.345  Sum_probs=17.5

Q ss_pred             EEEEcCCCchHHHHHHHHH
Q 029723           84 VGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~  102 (189)
                      ++|+|..++|||||+..|+
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7999999999999998874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.40  E-value=0.018  Score=47.75  Aligned_cols=24  Identities=38%  Similarity=0.602  Sum_probs=20.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhccc
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      -+.++||+|+|||-|.|.|+.++.
T Consensus        70 niLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceeeeCCCCccHHHHHHHHHhhcc
Confidence            367899999999999999998763

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.35  E-value=0.013  Score=40.03  Aligned_cols=36  Identities=14%  Similarity=0.116  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCchHHHHH-HHHHhcccCC-ccEEEe
Q 029723           79 ERAFTVGIGGPVGTGKTALM-LALCKFLRDK-YSLAAV  114 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL-~~L~Gll~p~-G~I~i~  114 (189)
                      ++|+.+.|..|.|||||+.+ ..+....... ..+.+.
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~   42 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVL   42 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEE
T ss_pred             HcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeee
Confidence            46888999999999999443 4444443333 344443

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=93.33  E-value=0.022  Score=43.96  Aligned_cols=20  Identities=30%  Similarity=0.315  Sum_probs=18.2

Q ss_pred             EEEEcCCCchHHHHHHHHHh
Q 029723           84 VGIGGPVGTGKTALMLALCK  103 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~G  103 (189)
                      ++++|...+|||||+..|+.
T Consensus        12 i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999999953

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.32  E-value=0.02  Score=46.50  Aligned_cols=25  Identities=36%  Similarity=0.351  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhccc
Q 029723           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        82 eivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      -++.++||+|+|||.|.+.|+..+.
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHHHhc
Confidence            3678999999999999999999874

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.01  E-value=0.026  Score=43.56  Aligned_cols=28  Identities=21%  Similarity=0.444  Sum_probs=25.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ++--++.|.||+.+|||+|..+|+.++.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            4457899999999999999999999985

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=92.66  E-value=0.043  Score=43.19  Aligned_cols=27  Identities=33%  Similarity=0.242  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      .+-.++|+|-+-+|||||++.|.+.-.
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEEecCccchhhhhhhhhccce
Confidence            455699999999999999999999654

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=92.62  E-value=0.021  Score=44.49  Aligned_cols=38  Identities=13%  Similarity=0.059  Sum_probs=24.6

Q ss_pred             ccCCCcEEEEEcCCCchHHH--HHHHHHhcccCCccEEEe
Q 029723           77 FNERAFTVGIGGPVGTGKTA--LMLALCKFLRDKYSLAAV  114 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTT--LL~~L~Gll~p~G~I~i~  114 (189)
                      +..+|+.+.|.+|.|||||+  |+.++...++....+.|.
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi   44 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLIL   44 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEE
T ss_pred             HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence            44578899999999999996  334444443333444443

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.04  E-value=0.032  Score=43.55  Aligned_cols=18  Identities=28%  Similarity=0.305  Sum_probs=17.2

Q ss_pred             EEEEcCCCchHHHHHHHH
Q 029723           84 VGIGGPVGTGKTALMLAL  101 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L  101 (189)
                      ++|+|...+|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            899999999999999988

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.87  E-value=0.036  Score=45.65  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             EEEEcCCCchHHHHHHHHH---hcccC
Q 029723           84 VGIGGPVGTGKTALMLALC---KFLRD  107 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~---Gll~p  107 (189)
                      ++|+|..++|||||+..|+   |.+..
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g~i~~   46 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAGIISA   46 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHBCCBC
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCccc
Confidence            9999999999999999995   55543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.65  E-value=0.044  Score=42.64  Aligned_cols=20  Identities=30%  Similarity=0.292  Sum_probs=17.9

Q ss_pred             EEEEEcCCCchHHHHHHHHH
Q 029723           83 TVGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~  102 (189)
                      -++|+|..++|||||+..|+
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            37899999999999998884

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.56  E-value=0.055  Score=38.80  Aligned_cols=38  Identities=26%  Similarity=0.296  Sum_probs=26.2

Q ss_pred             CcEEEEEcCCCchHHH-HHHHHHhcccCCccEEEeecCC
Q 029723           81 AFTVGIGGPVGTGKTA-LMLALCKFLRDKYSLAAVTNDI  118 (189)
Q Consensus        81 GeivgLiGpNGSGKTT-LL~~L~Gll~p~G~I~i~g~di  118 (189)
                      |.+..|+||=-||||| ||+.+-......-.|.+....+
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~   40 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI   40 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcc
Confidence            5677899999999999 6676655443334566555444

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.30  E-value=0.043  Score=44.14  Aligned_cols=24  Identities=29%  Similarity=0.221  Sum_probs=20.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHH
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~  102 (189)
                      .+|+.++|+|+.|+|||||+..++
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cCCCEEEeecCCCCChHHHHHHHH
Confidence            469999999999999999987554

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.051  Score=44.39  Aligned_cols=21  Identities=38%  Similarity=0.370  Sum_probs=18.1

Q ss_pred             cCCCcEEEEEcCCCchHHHHH
Q 029723           78 NERAFTVGIGGPVGTGKTALM   98 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL   98 (189)
                      .++|++..+.|.+|+|||||-
T Consensus        11 ~~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          11 GEKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CTTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCCEEEEEccCCCCcccce
Confidence            456889999999999999974

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.98  E-value=0.052  Score=44.38  Aligned_cols=22  Identities=32%  Similarity=0.283  Sum_probs=18.6

Q ss_pred             ccCCCcEEEEEcCCCchHHHHH
Q 029723           77 FNERAFTVGIGGPVGTGKTALM   98 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL   98 (189)
                      ..++|++..+.|.+|+|||||-
T Consensus        10 ~~~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          10 VGKEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             ECTTCCEEEEEECTTSCHHHHT
T ss_pred             cCCCCCEEEEEccCCCCccccc
Confidence            3456899999999999999974

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.71  E-value=0.047  Score=45.63  Aligned_cols=22  Identities=32%  Similarity=0.368  Sum_probs=17.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhc
Q 029723           83 TVGIGGPVGTGKTALMLALCKF  104 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gl  104 (189)
                      -+.|||++|.|||+|+.-|+..
T Consensus        45 n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHH
Confidence            3579999999999998766543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.67  E-value=0.049  Score=37.70  Aligned_cols=32  Identities=19%  Similarity=0.318  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEe
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAV  114 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~  114 (189)
                      -.+..|.+|.|||||+++-.++-  .....+.|.
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~--~~~~~vli~   39 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYA--AQGYKVLVL   39 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHH--TTTCCEEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH--HcCCcEEEE
Confidence            36677899999999998754432  222455544

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.43  E-value=0.069  Score=43.72  Aligned_cols=22  Identities=32%  Similarity=0.299  Sum_probs=19.1

Q ss_pred             ccCCCcEEEEEcCCCchHHHHH
Q 029723           77 FNERAFTVGIGGPVGTGKTALM   98 (189)
Q Consensus        77 f~~~GeivgLiGpNGSGKTTLL   98 (189)
                      ..+.|++..+.|-+|+|||||-
T Consensus        10 ~~~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          10 VGKQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             ECTTCCEEEEECCTTSSHHHHH
T ss_pred             cCCCCCEEEEEccCCCCcccce
Confidence            4557889999999999999985

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.13  E-value=0.16  Score=37.58  Aligned_cols=39  Identities=33%  Similarity=0.396  Sum_probs=30.7

Q ss_pred             CcEEEEE-cCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723           81 AFTVGIG-GPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (189)
Q Consensus        81 GeivgLi-GpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~  119 (189)
                      |.+|+|. +.-|+||||+---|+..+... -+|.+.+-|+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~   42 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT   42 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            5678888 778999999999888877655 47877776654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.94  E-value=0.093  Score=39.43  Aligned_cols=26  Identities=15%  Similarity=0.199  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      +-.+.|.||+|+||||+.+.++..+.
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHh
Confidence            56788999999999999999988653

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.58  E-value=0.1  Score=38.57  Aligned_cols=34  Identities=21%  Similarity=0.145  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCchHHHHH-HHHHhcccCCccEEEe
Q 029723           81 AFTVGIGGPVGTGKTALM-LALCKFLRDKYSLAAV  114 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL-~~L~Gll~p~G~I~i~  114 (189)
                      |.-+.|..|.|||||+.. -.++..+...+++.+.
T Consensus        40 ~~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l   74 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYV   74 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEcCCCCchhHHHHHHHHHHhhccCcceee
Confidence            445679999999999763 2233323333455443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.45  E-value=0.18  Score=39.00  Aligned_cols=29  Identities=24%  Similarity=0.276  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~  108 (189)
                      ...-|.|.|+.|+|||++.++|...-...
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~   50 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSDRS   50 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHSTTT
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCCc
Confidence            35568899999999999999998765544

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.18  E-value=0.07  Score=40.50  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=18.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHH
Q 029723           80 RAFTVGIGGPVGTGKTALMLALC  102 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~  102 (189)
                      +|+-+.|+.|.|+|||+..-+.+
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHHHH
Confidence            57778899999999998654443

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.09  E-value=0.18  Score=38.69  Aligned_cols=37  Identities=27%  Similarity=0.208  Sum_probs=30.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (189)
Q Consensus        83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~  119 (189)
                      +|+|.|+=|+||||+.--|+..+... -+|.+..-|++
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            68899999999999998888877766 46888878874

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=88.14  E-value=0.23  Score=36.16  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=28.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND  117 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~d  117 (189)
                      ++.+|+|.|.|  ||||.-.+|.-+++..|........
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~~~g~~~~~~g~   36 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILSQCGNTLYTAGN   36 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHHhCCCCEEEeCc
Confidence            35799999999  5999999999999866655544433

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.81  E-value=0.14  Score=37.24  Aligned_cols=34  Identities=21%  Similarity=0.049  Sum_probs=27.0

Q ss_pred             cEEEEEcCC-CchHHHHHHHHHhcccCCc-cEEEee
Q 029723           82 FTVGIGGPV-GTGKTALMLALCKFLRDKY-SLAAVT  115 (189)
Q Consensus        82 eivgLiGpN-GSGKTTLL~~L~Gll~p~G-~I~i~g  115 (189)
                      ..+-|.|-+ |+||||+--.|+..+...| +|.+..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            357789997 9999999999999887664 666643

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=87.75  E-value=0.14  Score=45.70  Aligned_cols=28  Identities=32%  Similarity=0.439  Sum_probs=23.6

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ..+.++|.|.|.+|||||+-.|.|+..+
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999999887654

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.72  E-value=0.14  Score=45.97  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.++|.|.|.+|||||+-.|.|+..+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999997765

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.51  E-value=0.3  Score=36.04  Aligned_cols=38  Identities=32%  Similarity=0.375  Sum_probs=29.3

Q ss_pred             EEEEE-cCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723           83 TVGIG-GPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (189)
Q Consensus        83 ivgLi-GpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~  120 (189)
                      +|+|+ +.-|+||||+..-|+..+... -+|.+.+-|...
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~   42 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM   42 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            56666 888999999999988877654 477777777643

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=86.95  E-value=0.16  Score=45.39  Aligned_cols=27  Identities=22%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+.++|.|.|.+|||||+-.|.|+..+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999998766

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.48  E-value=0.28  Score=37.50  Aligned_cols=41  Identities=24%  Similarity=0.264  Sum_probs=31.8

Q ss_pred             CCC-cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723           79 ERA-FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (189)
Q Consensus        79 ~~G-eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~  119 (189)
                      +.| .++.+.|+=|+||||+.-.|+-.+... -+|.+..-|++
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            444 788888999999999988887776655 47877777764

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.35  E-value=0.49  Score=33.19  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=27.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhcccCCc-cEEEeecCC
Q 029723           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDI  118 (189)
Q Consensus        80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G-~I~i~g~di  118 (189)
                      +|.+..|+||=-|||||-|-..+..++..| .|.+....+
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~   40 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK   40 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence            588899999999999997666555554443 355554433

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.86  E-value=0.39  Score=36.67  Aligned_cols=38  Identities=24%  Similarity=0.197  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (189)
Q Consensus        81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di  118 (189)
                      -.++-+.|+=|.||||+--.|+-.+... .++.+...|.
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp   46 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3678899999999999998888877655 4777777775

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=85.55  E-value=0.2  Score=45.46  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=23.7

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      ..+.++|.|.|.+|||||+-.+.|+..+
T Consensus       120 ~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         120 DRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             HTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3456899999999999999988888765

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=84.66  E-value=0.25  Score=44.26  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (189)
Q Consensus        79 ~~GeivgLiGpNGSGKTTLL~~L~Gll  105 (189)
                      .+..+|.|.|.+|||||+-.+.|+..+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999998765

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=84.09  E-value=0.22  Score=45.06  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=23.8

Q ss_pred             cCCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723           78 NERAFTVGIGGPVGTGKTALMLALCKFLR  106 (189)
Q Consensus        78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~  106 (189)
                      ..+.+++.|.|.+|||||.-.+.|+..+.
T Consensus       118 ~~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         118 DRENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             HTSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            33568999999999999999888877653

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.39  E-value=0.46  Score=34.28  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=18.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhc--ccCCccEEEe
Q 029723           84 VGIGGPVGTGKTALMLALCKF--LRDKYSLAAV  114 (189)
Q Consensus        84 vgLiGpNGSGKTTLL~~L~Gl--l~p~G~I~i~  114 (189)
                      +.|+.|.|+|||...-+++..  .+..+.+.+.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i   58 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLML   58 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence            347799999999754433322  2233555544