Citrus Sinensis ID: 029734


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MALSGEVGLRLLLCPIGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQILESVNGEMSQFVSDHQVEFRFVRTLFMKTVALVNQTVKEIIHPVPTQANRAIEGPPESIPDSQSDNED
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccccc
MALSGEVGLRLllcpigsnivvRTACCsvgtilpvysTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKIlcwfplyhhvKFAFLVWLqlpstngakyfYMSRLRPFLLRHQARLDQILESVNGEMSQFVSDHQVEFRFVRTLFMKTVALVNQTVKEIihpvptqanraiegppesipdsqsdned
MALSGEVGLRLLLCPIGSNIVVRTACCSVGTILPVYSTFKAIeskdenekqKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQILESVNGEMSQFVSDHQVEFRFVRTLFMKTVALVNQTVKEIIHPvptqanraiegppesipdsqsdned
MALSGEVGLRLLLCPIGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQILESVNGEMSQFVSDHQVEFRFVRTLFMKTVALVNQTVKEIIHPVPTQANRAIEGPPESIPDSQSDNED
******VGLRLLLCPIGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQILESVNGEMSQFVSDHQVEFRFVRTLFMKTVALVNQTVKEIIHPV************************
*ALSGEVGLRLLLCPIGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQILESVNGEMSQFVSDHQVEFRFVRTLFM*****************************************
MALSGEVGLRLLLCPIGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQILESVNGEMSQFVSDHQVEFRFVRTLFMKTVALVNQTVKEIIHPVPTQANRAIEGP*************
MALSGEVGLRLLLCPIGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQILESVNGEMSQFVSDHQVEFRFVRTLFMKTVALVNQTVKEIIHPV************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MALSGEVGLRLLLCPIGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQILESVNGEMSQFVSDHQVEFRFVRTLFMKTVALVNQTVKEIIHPVPTQANRAIEGPPESIPDSQSDNED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query189 2.2.26 [Sep-21-2011]
Q6NLY8200 HVA22-like protein k OS=A yes no 0.936 0.885 0.571 5e-59
Q00765189 Receptor expression-enhan yes no 0.661 0.661 0.382 1e-21
Q5RE33189 Receptor expression-enhan yes no 0.661 0.661 0.382 1e-21
B2RZ37189 Receptor expression-enhan yes no 0.661 0.661 0.382 2e-21
Q60870185 Receptor expression-enhan yes no 0.661 0.675 0.382 5e-21
Q29RM3189 Receptor expression-enhan yes no 0.661 0.661 0.375 8e-21
Q96HR9184 Receptor expression-enhan no no 0.544 0.559 0.403 1e-18
Q32LG5185 Receptor expression-enhan no no 0.544 0.556 0.403 1e-18
Q8BGH4201 Receptor expression-enhan no no 0.555 0.522 0.390 2e-18
Q9H902201 Receptor expression-enhan no no 0.555 0.522 0.390 2e-18
>sp|Q6NLY8|HA22K_ARATH HVA22-like protein k OS=Arabidopsis thaliana GN=HVA22K PE=2 SV=1 Back     alignment and function desciption
 Score =  226 bits (577), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 137/189 (72%), Gaps = 12/189 (6%)

Query: 2   ALSGEVGLRLLLCPIGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYG 61
            L+GEVGLR+L  P+ SNIV+RTACCS+G  LPVYSTFKAIES DENE+QK L+YWA YG
Sbjct: 17  GLTGEVGLRVLFSPLSSNIVLRTACCSIGIGLPVYSTFKAIESGDENEQQKMLIYWAAYG 76

Query: 62  SFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQI 121
           SFS+ E+F DKI+ WFPLY+HVKFAFLVWLQLP+  G+K  Y +++RPFLLRHQAR+DQ+
Sbjct: 77  SFSLVEVFTDKIISWFPLYYHVKFAFLVWLQLPTVEGSKQIYNNQIRPFLLRHQARVDQL 136

Query: 122 LESVNGEMSQFVSDHQVEFRFVRTLFMKTVALVNQT---VKEIIHPVPTQANRAIEGPPE 178
           ++ V GEM + V  HQ E RFVR +  K +  VN+    + EI +  P           E
Sbjct: 137 VDGVYGEMVKVVRSHQGEIRFVRAMIAKILGSVNEDAPRLGEIANGSPVS---------E 187

Query: 179 SIPDSQSDN 187
           +  DS+SD+
Sbjct: 188 TNSDSESDS 196





Arabidopsis thaliana (taxid: 3702)
>sp|Q00765|REEP5_HUMAN Receptor expression-enhancing protein 5 OS=Homo sapiens GN=REEP5 PE=1 SV=3 Back     alignment and function description
>sp|Q5RE33|REEP5_PONAB Receptor expression-enhancing protein 5 OS=Pongo abelii GN=REEP5 PE=2 SV=1 Back     alignment and function description
>sp|B2RZ37|REEP5_RAT Receptor expression-enhancing protein 5 OS=Rattus norvegicus GN=Reep5 PE=1 SV=1 Back     alignment and function description
>sp|Q60870|REEP5_MOUSE Receptor expression-enhancing protein 5 OS=Mus musculus GN=Reep5 PE=1 SV=1 Back     alignment and function description
>sp|Q29RM3|REEP5_BOVIN Receptor expression-enhancing protein 5 OS=Bos taurus GN=REEP5 PE=2 SV=1 Back     alignment and function description
>sp|Q96HR9|REEP6_HUMAN Receptor expression-enhancing protein 6 OS=Homo sapiens GN=REEP6 PE=1 SV=1 Back     alignment and function description
>sp|Q32LG5|REEP6_BOVIN Receptor expression-enhancing protein 6 OS=Bos taurus GN=REEP6 PE=2 SV=1 Back     alignment and function description
>sp|Q8BGH4|REEP1_MOUSE Receptor expression-enhancing protein 1 OS=Mus musculus GN=Reep1 PE=1 SV=1 Back     alignment and function description
>sp|Q9H902|REEP1_HUMAN Receptor expression-enhancing protein 1 OS=Homo sapiens GN=REEP1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
224103445189 predicted protein [Populus trichocarpa] 1.0 1.0 0.677 1e-72
359475272214 PREDICTED: HVA22-like protein k-like [Vi 0.899 0.794 0.672 9e-66
255556101 1157 pentatricopeptide repeat-containing prot 0.947 0.154 0.622 8e-61
224096944196 predicted protein [Populus trichocarpa] 1.0 0.964 0.571 2e-59
79497359200 HVA22-like protein k [Arabidopsis thalia 0.936 0.885 0.571 2e-57
297802284205 hypothetical protein ARALYDRAFT_912692 [ 0.941 0.868 0.564 6e-57
255568265192 Receptor expression-enhancing protein, p 0.962 0.947 0.565 1e-56
356545274184 PREDICTED: HVA22-like protein k-like [Gl 0.962 0.989 0.562 3e-55
195625098196 receptor expression-enhancing protein 6 0.957 0.923 0.552 4e-55
358248064193 uncharacterized protein LOC100811809 [Gl 0.984 0.963 0.532 2e-54
>gi|224103445|ref|XP_002313060.1| predicted protein [Populus trichocarpa] gi|222849468|gb|EEE87015.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 150/189 (79%)

Query: 1   MALSGEVGLRLLLCPIGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVY 60
           MA  GEVGL+LLL P+ SNIVVRTACCSVG  LP+YSTFKAIE+KD+ E+Q+WL+YWA Y
Sbjct: 1   MAFPGEVGLQLLLSPLNSNIVVRTACCSVGIALPIYSTFKAIENKDQIEQQRWLLYWAAY 60

Query: 61  GSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQ 120
           GSFS+AE+FADKIL WFPLY+H+KFAFLVWLQLPS NGA   YMS LRPFLLRHQARLD 
Sbjct: 61  GSFSLAEVFADKILSWFPLYYHMKFAFLVWLQLPSANGAGQLYMSHLRPFLLRHQARLDN 120

Query: 121 ILESVNGEMSQFVSDHQVEFRFVRTLFMKTVALVNQTVKEIIHPVPTQANRAIEGPPESI 180
            +E + GEM++FVS HQ EFRF + L MK +A VNQ  +++I P   QAN   +GP   I
Sbjct: 121 FVEFLYGEMNKFVSAHQAEFRFAKALLMKILASVNQIARDVIRPGGRQANGTFQGPARRI 180

Query: 181 PDSQSDNED 189
            DSQSD ED
Sbjct: 181 QDSQSDGED 189




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475272|ref|XP_002280949.2| PREDICTED: HVA22-like protein k-like [Vitis vinifera] gi|297741427|emb|CBI32558.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255556101|ref|XP_002519085.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223541748|gb|EEF43296.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224096944|ref|XP_002310796.1| predicted protein [Populus trichocarpa] gi|222853699|gb|EEE91246.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|79497359|ref|NP_195390.2| HVA22-like protein k [Arabidopsis thaliana] gi|57012586|sp|Q6NLY8.1|HA22K_ARATH RecName: Full=HVA22-like protein k; Short=AtHVA22k gi|45752772|gb|AAS76284.1| At4g36720 [Arabidopsis thaliana] gi|332661293|gb|AEE86693.1| HVA22-like protein k [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297802284|ref|XP_002869026.1| hypothetical protein ARALYDRAFT_912692 [Arabidopsis lyrata subsp. lyrata] gi|297314862|gb|EFH45285.1| hypothetical protein ARALYDRAFT_912692 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255568265|ref|XP_002525107.1| Receptor expression-enhancing protein, putative [Ricinus communis] gi|223535566|gb|EEF37234.1| Receptor expression-enhancing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356545274|ref|XP_003541069.1| PREDICTED: HVA22-like protein k-like [Glycine max] Back     alignment and taxonomy information
>gi|195625098|gb|ACG34379.1| receptor expression-enhancing protein 6 [Zea mays] gi|219887183|gb|ACL53966.1| unknown [Zea mays] gi|414879781|tpg|DAA56912.1| TPA: Receptor expression-enhancing protein 6 [Zea mays] Back     alignment and taxonomy information
>gi|358248064|ref|NP_001239804.1| uncharacterized protein LOC100811809 [Glycine max] gi|255636485|gb|ACU18581.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
TAIR|locus:2115315200 HVA22K "AT4G36720" [Arabidopsi 0.968 0.915 0.572 8.9e-54
UNIPROTKB|Q00765189 REEP5 "Receptor expression-enh 0.661 0.661 0.382 2.6e-22
RGD|1306047189 Reep5 "receptor accessory prot 0.661 0.661 0.382 4.3e-22
MGI|MGI:1270152185 Reep5 "receptor accessory prot 0.661 0.675 0.382 1.1e-21
UNIPROTKB|Q29RM3189 REEP5 "Receptor expression-enh 0.661 0.661 0.375 1.5e-21
ZFIN|ZDB-GENE-050320-111184 zgc:101744 "zgc:101744" [Danio 0.544 0.559 0.432 1.5e-21
ZFIN|ZDB-GENE-050706-125268 reep2 "receptor accessory prot 0.544 0.384 0.359 2.5e-21
ZFIN|ZDB-GENE-040912-98208 reep6 "receptor accessory prot 0.624 0.567 0.379 8e-21
UNIPROTKB|Q32LG5185 REEP6 "Receptor expression-enh 0.539 0.551 0.407 1.5e-19
UNIPROTKB|A2VE59201 REEP1 "Uncharacterized protein 0.544 0.512 0.388 1.9e-19
TAIR|locus:2115315 HVA22K "AT4G36720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 107/187 (57%), Positives = 136/187 (72%)

Query:     3 LSGEVGLRLLLCPIGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGS 62
             L+GEVGLR+L  P+ SNIV+RTACCS+G  LPVYSTFKAIES DENE+QK L+YWA YGS
Sbjct:    18 LTGEVGLRVLFSPLSSNIVLRTACCSIGIGLPVYSTFKAIESGDENEQQKMLIYWAAYGS 77

Query:    63 FSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQIL 122
             FS+ E+F DKI+ WFPLY+HVKFAFLVWLQLP+  G+K  Y +++RPFLLRHQAR+DQ++
Sbjct:    78 FSLVEVFTDKIISWFPLYYHVKFAFLVWLQLPTVEGSKQIYNNQIRPFLLRHQARVDQLV 137

Query:   123 ESVNGEMSQFVSDHQVEFRFVRTLFMKTVALVNQTVKEIIHPVPTQANRAIEGPPESIPD 182
             + V GEM + V  HQ E RFVR +  K +  VN+    +       AN +      S  +
Sbjct:   138 DGVYGEMVKVVRSHQGEIRFVRAMIAKILGSVNEDAPRL----GEIANGSPVSETNSDSE 193

Query:   183 SQSDNED 189
             S S++ED
Sbjct:   194 SDSNHED 200




GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|Q00765 REEP5 "Receptor expression-enhancing protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1306047 Reep5 "receptor accessory protein 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1270152 Reep5 "receptor accessory protein 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RM3 REEP5 "Receptor expression-enhancing protein 5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050320-111 zgc:101744 "zgc:101744" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050706-125 reep2 "receptor accessory protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-98 reep6 "receptor accessory protein 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q32LG5 REEP6 "Receptor expression-enhancing protein 6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A2VE59 REEP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6NLY8HA22K_ARATHNo assigned EC number0.57140.93650.885yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pg.C_LG_IX000518
hypothetical protein (189 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
pfam0313494 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family 3e-32
COG5052186 COG5052, YOP1, Protein involved in membrane traffi 2e-16
>gnl|CDD|217381 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family Back     alignment and domain information
 Score =  111 bits (279), Expect = 3e-32
 Identities = 41/93 (44%), Positives = 56/93 (60%)

Query: 19  NIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFP 78
            I  R     +G + P Y+++KA+ESKD+ +  +WL YW VY   ++ E F+D IL W P
Sbjct: 2   GIGARLLSNLIGFLYPAYASYKALESKDKEDDTQWLTYWVVYSFLTLFESFSDIILSWIP 61

Query: 79  LYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFL 111
            Y+ +K  FLVWL LP T GA Y Y   +RP L
Sbjct: 62  FYYELKLLFLVWLVLPKTQGASYIYDKFIRPLL 94


This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein. Length = 94

>gnl|CDD|227385 COG5052, YOP1, Protein involved in membrane traffic [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 189
KOG1726225 consensus HVA22/DP1 gene product-related proteins 100.0
KOG1725186 consensus Protein involved in membrane traffic (YO 99.97
PF0313494 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IP 99.97
COG5052186 YOP1 Protein involved in membrane traffic [Intrace 99.89
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms] Back     alignment and domain information
Probab=100.00  E-value=1.9e-33  Score=237.62  Aligned_cols=130  Identities=34%  Similarity=0.734  Sum_probs=117.2

Q ss_pred             HHhhhhhhhccccHHHHHHHhhc--CChhhhhhHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHhcCCCcch
Q 029734           22 VRTACCSVGTILPVYSTFKAIES--KDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGA   99 (189)
Q Consensus        22 ~r~~~~~iG~~yPaY~S~kal~~--~~~~~~~~WL~YWivya~~~~~E~~~d~ll~wiP~Y~~~Kl~fllwL~~P~t~GA   99 (189)
                      .|++.+++|.+||||+|+|++++  ++-++..+|++|||+||+++++|.++|.+++|+|||+++|++|++||++|.|+|+
T Consensus         2 ~~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G~   81 (225)
T KOG1726|consen    2 IRLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPATKGA   81 (225)
T ss_pred             eehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccccCcc
Confidence            46778889999999999999999  6678899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhhhhhhhhhchHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHH
Q 029734          100 KYFYMSRLRPFLLRHQARLDQILESVNGEMSQ-FVSDHQVEFRFVRTLFMKTV  151 (189)
Q Consensus       100 ~~lY~~~l~P~l~k~e~~ID~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~  151 (189)
                      .++|++++||++.+||++||+++.+++.+..+ +++..++.++.+.+.+....
T Consensus        82 ~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~  134 (225)
T KOG1726|consen   82 SYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAA  134 (225)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988766 45555778888766554443



>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes Back     alignment and domain information
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00