Citrus Sinensis ID: 029743
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 188 | 2.2.26 [Sep-21-2011] | |||||||
| Q58DT8 | 382 | WD repeat-containing prot | yes | no | 0.803 | 0.395 | 0.447 | 9e-31 | |
| Q9CX97 | 388 | WD repeat-containing prot | yes | no | 0.755 | 0.365 | 0.454 | 2e-30 | |
| A1L112 | 384 | WD repeat-containing prot | yes | no | 0.755 | 0.369 | 0.454 | 3e-30 | |
| Q9H6Y2 | 383 | WD repeat-containing prot | yes | no | 0.755 | 0.370 | 0.447 | 8e-30 | |
| B2ZZS9 | 400 | WD repeat-containing prot | N/A | no | 0.888 | 0.417 | 0.394 | 2e-29 | |
| Q5R9T6 | 383 | WD repeat-containing prot | yes | no | 0.755 | 0.370 | 0.447 | 2e-29 | |
| Q54SA5 | 408 | WD repeat-containing prot | yes | no | 0.771 | 0.355 | 0.401 | 5e-28 | |
| Q6DRF9 | 387 | WD repeat-containing prot | yes | no | 0.755 | 0.366 | 0.412 | 1e-27 | |
| P0CS40 | 374 | WD repeat-containing prot | yes | no | 0.792 | 0.398 | 0.414 | 6e-25 | |
| P0CS41 | 374 | WD repeat-containing prot | N/A | no | 0.792 | 0.398 | 0.414 | 6e-25 |
| >sp|Q58DT8|WDR55_BOVIN WD repeat-containing protein 55 OS=Bos taurus GN=WDR55 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 132 bits (333), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
M D LL SGDG L V N+++ + SE +LTSV LMK GRKV CGS GT
Sbjct: 174 MALDPDKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKYGRKVACGSSEGT 233
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+ L++W F SDRF L S+D ++ + E + GS +G+I V ILPNR++ + +
Sbjct: 234 IYLFNWDGFGATSDRFA-LRAESIDCMVPVTESLLCAGSTDGVIRAVNILPNRVVGSVGQ 292
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
H+E P+E+LALSH FL S HD LK WD+
Sbjct: 293 HAEEPVENLALSHCGCFLASSGHDQRLKFWDM 324
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Bos taurus (taxid: 9913) |
| >sp|Q9CX97|WDR55_MOUSE WD repeat-containing protein 55 OS=Mus musculus GN=Wdr55 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 184 LLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFNWNGF 243
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P+E+L
Sbjct: 244 GATSDRF-ALRAESIDCIVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEPVEAL 302
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
ALSH FL S HD LK WD+
Sbjct: 303 ALSHCGHFLASSGHDQRLKFWDM 325
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Mus musculus (taxid: 10090) |
| >sp|A1L112|WDR55_RAT WD repeat-containing protein 55 OS=Rattus norvegicus GN=Wdr55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 183 LLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFNWNGF 242
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P+E L
Sbjct: 243 GATSDRFA-LRAESIDCMVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEPVEEL 301
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
ALSH FL S HD LK WD+
Sbjct: 302 ALSHCGHFLASSGHDQRLKFWDM 324
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Rattus norvegicus (taxid: 10116) |
| >sp|Q9H6Y2|WDR55_HUMAN WD repeat-containing protein 55 OS=Homo sapiens GN=WDR55 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L + N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 183 LLTASGDGCLGIFNIKRRRFELLSEPQSGDLTSVTLMKWGKKVACGSSEGTIYLFNWNGF 242
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P+E L
Sbjct: 243 GATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEPVEEL 301
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
ALSH +FL S HD LK WD+
Sbjct: 302 ALSHCGRFLASSGHDQRLKFWDM 324
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Homo sapiens (taxid: 9606) |
| >sp|B2ZZS9|WDR55_ORYLA WD repeat-containing protein 55 OS=Oryzias latipes GN=wdr55 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 3/170 (1%)
Query: 3 FAADAMK--LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
A D K LL TSGDGT+ V N+++ + SEF +LTSV LMK G+KVVCGS GT
Sbjct: 190 IAVDQAKRILLTTSGDGTMGVFNIKRRRFELLSEFQSGDLTSVALMKRGKKVVCGSSEGT 249
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
V +++W F SDRF + SVD ++ + + + T S +G I + +LPNR+I I +
Sbjct: 250 VYIFNWNGFGATSDRF-AVKAESVDCIVPITDSIMCTASMDGYIRAINLLPNRVIGCIGQ 308
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAAESD 170
H PIE + S D +FL S +HD ++K W++ ++ K + ++ + + D
Sbjct: 309 HVGEPIEEINKSWDSRFLVSCAHDQLIKFWEISNLQKTTVSDYRKRKKKD 358
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis, including thymus development. Oryzias latipes (taxid: 8090) |
| >sp|Q5R9T6|WDR55_PONAB WD repeat-containing protein 55 OS=Pongo abelii GN=WDR55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 183 LLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKCGKKVACGSSEGTIYLFNWNGF 242
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P+ L
Sbjct: 243 GATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEPVGEL 301
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
ALSH +FL S HD LK WD+
Sbjct: 302 ALSHCGRFLASSGHDQRLKFWDM 324
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Pongo abelii (taxid: 9601) |
| >sp|Q54SA5|WDR55_DICDI WD repeat-containing protein 55 homolog OS=Dictyostelium discoideum GN=wdr55 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
D + TSGDG +S+ N + ++ SE S+ EL S + + NG+K+VCGSQ G++L+Y
Sbjct: 156 DDRHIAATSGDGGVSIYNFVRKSMDDISEKSDNELLSCLSLDNGQKLVCGSQDGSILIYD 215
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
++ +F G P SVDAL+K++ + +GS +G+I +G+ P +++ + EHS +P
Sbjct: 216 RNNLENVK-KFAG-HPQSVDALVKVNNNTFFSGSSDGIIRFIGLRPKKLLGVVGEHSTFP 273
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
IE +A+S D ++LGSISHD LK W++
Sbjct: 274 IERMAISRDNRYLGSISHDFSLKFWNV 300
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q6DRF9|WDR55_DANRE WD repeat-containing protein 55 OS=Danio rerio GN=wdr55 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL +SGDGTL V N+++ + SE +LTSV +MK GRKVVCGS GT+ +++W F
Sbjct: 180 LLTSSGDGTLGVFNIKRRRFELLSEIQNGDLTSVSIMKRGRKVVCGSGEGTIYIFNWNGF 239
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF + SVD ++ + + + S +G+I + ILPNR++ I +H IE +
Sbjct: 240 GATSDRF-AVQAESVDCIVPITDSILCAASTDGVIRAINILPNRVVGSIGQHVGEAIEEI 298
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
A D FL S +HD ++K WD+
Sbjct: 299 ARCRDTHFLASCAHDELIKFWDI 321
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Danio rerio (taxid: 7955) |
| >sp|P0CS40|JIP5_CRYNJ WD repeat-containing protein JIP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=JIP5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 8/157 (5%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQS 58
T+ D +L+ TSGDG LSV ++R N T T SE E+EL S+V +K G+K + GS
Sbjct: 169 FTYFDDKRQLVATSGDGHLSVIDIRSNKSTPLTVSEDQEDELLSIVPIKGGQKAIVGS-- 226
Query: 59 GTVLLYSWGY---FKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115
G +L W + D DR G P S+DA++ L D + TGSE+G+I ++ +LP++ +
Sbjct: 227 GLGILSVWNRQMGWADSVDRIPG-HPASIDAIVALTPDIIATGSEDGMIRVIQVLPHKFL 285
Query: 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
+A H E+P+E + L + K+LGS+SHD LKL D+
Sbjct: 286 GVVATHEEFPVERIRLDRNNKWLGSVSHDECLKLTDV 322
|
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|P0CS41|JIP5_CRYNB WD repeat-containing protein JIP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=JIP5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 8/157 (5%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQS 58
T+ D +L+ TSGDG LSV ++R N T T SE E+EL S+V +K G+K + GS
Sbjct: 169 FTYFDDKRQLVATSGDGHLSVIDIRSNKSTPLTVSEDQEDELLSIVPIKGGQKAIVGS-- 226
Query: 59 GTVLLYSWGY---FKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115
G +L W + D DR G P S+DA++ L D + TGSE+G+I ++ +LP++ +
Sbjct: 227 GLGILSVWNRQMGWADSVDRIPG-HPASIDAIVALTPDIIATGSEDGMIRVIQVLPHKFL 285
Query: 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
+A H E+P+E + L + K+LGS+SHD LKL D+
Sbjct: 286 GVVATHEEFPVERIRLDRNNKWLGSVSHDECLKLTDV 322
|
Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 188 | ||||||
| 224079375 | 348 | predicted protein [Populus trichocarpa] | 0.962 | 0.520 | 0.807 | 2e-81 | |
| 388508106 | 359 | unknown [Medicago truncatula] gi|3885100 | 0.984 | 0.515 | 0.720 | 6e-76 | |
| 217072834 | 359 | unknown [Medicago truncatula] | 0.978 | 0.512 | 0.723 | 1e-75 | |
| 357477601 | 420 | WD-40 repeat protein [Medicago truncatul | 0.978 | 0.438 | 0.723 | 2e-75 | |
| 224065234 | 348 | predicted protein [Populus trichocarpa] | 0.856 | 0.462 | 0.813 | 2e-75 | |
| 356544310 | 340 | PREDICTED: WD repeat-containing protein | 0.888 | 0.491 | 0.804 | 7e-75 | |
| 356534870 | 352 | PREDICTED: WD repeat-containing protein | 0.856 | 0.457 | 0.813 | 1e-74 | |
| 225463585 | 346 | PREDICTED: WD repeat-containing protein | 0.962 | 0.523 | 0.807 | 2e-74 | |
| 356577598 | 313 | PREDICTED: WD repeat-containing protein | 0.888 | 0.533 | 0.796 | 3e-74 | |
| 225433585 | 346 | PREDICTED: WD repeat-containing protein | 0.962 | 0.523 | 0.802 | 3e-73 |
| >gi|224079375|ref|XP_002305841.1| predicted protein [Populus trichocarpa] gi|222848805|gb|EEE86352.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 147/182 (80%), Positives = 166/182 (91%), Gaps = 1/182 (0%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLL TSGDGTLSVCNLR N +Q++SEFSEEEL SVV+MKNGRKV+CGSQ+GT
Sbjct: 141 MTFASDSMKLLSTSGDGTLSVCNLRSNKIQSQSEFSEEELLSVVIMKNGRKVICGSQNGT 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF GLSPNS+DALLKLDEDRVITGSENGLISL+GILPNRIIQP+AE
Sbjct: 201 LLLYSWGFFKDCSDRFTGLSPNSIDALLKLDEDRVITGSENGLISLLGILPNRIIQPLAE 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNIS-QAAESDSDGDDMDVD 179
HSEYPIE LA SHDRKFLGSISHD +LK+WDLDD+L+ S N + QAA SDSD D+MDVD
Sbjct: 261 HSEYPIEHLAFSHDRKFLGSISHDQVLKMWDLDDLLQNSVNAQNDQAAVSDSDSDEMDVD 320
Query: 180 NK 181
K
Sbjct: 321 TK 322
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388508106|gb|AFK42119.1| unknown [Medicago truncatula] gi|388510080|gb|AFK43106.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 288 bits (738), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 139/193 (72%), Positives = 163/193 (84%), Gaps = 8/193 (4%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMK+L TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 144 ITFASDAMKILATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 203
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRFV L+ NS+D +LKLDE R+ITGSENG+I+LVGILPNRII+PIAE
Sbjct: 204 LLLYSWGCFKDCSDRFVDLASNSIDTMLKLDEGRIITGSENGMINLVGILPNRIIEPIAE 263
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN-------ISQAAESDSDG 173
HSEYP+E LA SHDRKFLGSI HD MLKLWDLD+IL+GS + ++ +SD DG
Sbjct: 264 HSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDNILQGSRSTQRNETGVVANDGDSD-DG 322
Query: 174 DDMDVDNKGFPFW 186
D+MDVDN F F+
Sbjct: 323 DEMDVDNSAFKFF 335
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072834|gb|ACJ84777.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 139/192 (72%), Positives = 162/192 (84%), Gaps = 8/192 (4%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMK+L TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 144 ITFASDAMKILATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 203
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRFV L+ NS+D +LKLDE R+ITGSENG+I+LVGILPNRII+PIAE
Sbjct: 204 LLLYSWGCFKDCSDRFVDLASNSIDTMLKLDEGRIITGSENGMINLVGILPNRIIEPIAE 263
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN-------ISQAAESDSDG 173
HSEYP+E LA SHDRKFLGSI HD MLKLWDLD+IL+GS + ++ +SD DG
Sbjct: 264 HSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDNILQGSRSTQRNETGVVANDGDSD-DG 322
Query: 174 DDMDVDNKGFPF 185
D+MDVDN F F
Sbjct: 323 DEMDVDNSAFKF 334
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357477601|ref|XP_003609086.1| WD-40 repeat protein [Medicago truncatula] gi|355510141|gb|AES91283.1| WD-40 repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 139/192 (72%), Positives = 162/192 (84%), Gaps = 8/192 (4%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMK+L TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 205 ITFASDAMKILATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 264
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRFV L+ NS+D +LKLDEDR+ITGSENG+I+LVGILPNRII+PIAE
Sbjct: 265 LLLYSWGCFKDCSDRFVDLASNSIDTMLKLDEDRIITGSENGMINLVGILPNRIIEPIAE 324
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN-------ISQAAESDSDG 173
HSEYP+E LA SHDRKFLGSI HD MLKLWDLD+IL+GS + ++ +SD DG
Sbjct: 325 HSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDNILQGSRSTQRNETGVVANDGDSD-DG 383
Query: 174 DDMDVDNKGFPF 185
D+MDVDN F
Sbjct: 384 DEMDVDNSASKF 395
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065234|ref|XP_002301730.1| predicted protein [Populus trichocarpa] gi|222843456|gb|EEE81003.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/161 (81%), Positives = 150/161 (93%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLL TSGDGTLSVCNLR N +Q++SEFSEEEL SVV+MKNGRKV+CGSQ+GT
Sbjct: 141 MTFASDSMKLLSTSGDGTLSVCNLRTNKIQSQSEFSEEELLSVVIMKNGRKVICGSQNGT 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF LSPNS+D LLKLDEDRVITGSENGLISL+GILPNR+IQP+AE
Sbjct: 201 LLLYSWGFFKDCSDRFTALSPNSIDTLLKLDEDRVITGSENGLISLLGILPNRVIQPLAE 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161
HSEYPIE LA SHDRK+LGSISHD +LK+WDLDD+L+ SGN
Sbjct: 261 HSEYPIECLAFSHDRKYLGSISHDQVLKMWDLDDLLQNSGN 301
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544310|ref|XP_003540596.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 285 bits (728), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 136/169 (80%), Positives = 152/169 (89%), Gaps = 2/169 (1%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMKLL TSGDGTLSVCNLR+NTVQ RSEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 141 ITFASDAMKLLATSGDGTLSVCNLRRNTVQARSEFSEDELLSVVLMKNGRKVVCGSQTGI 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRF LS NS+DA+LKLDEDR+ITGSENG+I+LVGILPNR+IQPIAE
Sbjct: 201 ILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAE 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAAES 169
HSEYP+E LA SHDRKFLGSI+HD MLKLWDLD+IL GS N +Q ES
Sbjct: 261 HSEYPVECLAFSHDRKFLGSIAHDQMLKLWDLDNILPGSRN--TQTNES 307
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534870|ref|XP_003535974.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 131/161 (81%), Positives = 148/161 (91%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTF +DAMKLL TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 141 MTFVSDAMKLLATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGV 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRF LS NS+DA+LKLDEDR+ITGSENG+I+LVGILPNR+IQPIAE
Sbjct: 201 ILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAE 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161
HSEYP+E LA SHD+KFLGSI+HD MLKLWDLD+IL+GSGN
Sbjct: 261 HSEYPVECLAFSHDKKFLGSIAHDQMLKLWDLDNILQGSGN 301
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463585|ref|XP_002271081.1| PREDICTED: WD repeat-containing protein 55 [Vitis vinifera] gi|297743547|emb|CBI36414.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/182 (80%), Positives = 166/182 (91%), Gaps = 1/182 (0%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLLG SGDGTLSVCNLR+N VQ +SEFSE+EL SVV+MKNGRKV+CG+QSG
Sbjct: 142 MTFASDSMKLLGVSGDGTLSVCNLRRNKVQVQSEFSEDELLSVVIMKNGRKVICGTQSGA 201
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF+ LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE
Sbjct: 202 LLLYSWGHFKDCSDRFIDLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 261
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNI-SQAAESDSDGDDMDVD 179
HSEYP+E LA S DRK+LGSISHD MLKLWDLDD+L+GSG+ + SQ A +DSD D+MDVD
Sbjct: 262 HSEYPVERLAFSFDRKYLGSISHDQMLKLWDLDDLLQGSGSTLRSQEAMADSDSDEMDVD 321
Query: 180 NK 181
K
Sbjct: 322 AK 323
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577598|ref|XP_003556911.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 133/167 (79%), Positives = 149/167 (89%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TF +DAMKLL TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 103 ITFVSDAMKLLATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 162
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRF LS NS+DA+LKLDEDR+ITGSEN +I+LVGILPNR+IQPIAE
Sbjct: 163 ILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENRIINLVGILPNRVIQPIAE 222
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAA 167
HSEYP+E LA SHDRKFLGSISHD MLKLWDLD+IL+GSGN S A
Sbjct: 223 HSEYPVECLAFSHDRKFLGSISHDQMLKLWDLDNILQGSGNTQSNEA 269
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433585|ref|XP_002269842.1| PREDICTED: WD repeat-containing protein 55 [Vitis vinifera] gi|298205166|emb|CBI17225.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 146/182 (80%), Positives = 165/182 (90%), Gaps = 1/182 (0%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLLG SGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKV+CG+QSG
Sbjct: 142 MTFASDSMKLLGVSGDGTLSVCNLRRNKVQVQSEFSEDELLSVVLMKNGRKVICGTQSGA 201
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF+ LSPNSVDALLKLDED VITGSENGLISLVGILPNRIIQPIAE
Sbjct: 202 LLLYSWGHFKDCSDRFIDLSPNSVDALLKLDEDSVITGSENGLISLVGILPNRIIQPIAE 261
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNI-SQAAESDSDGDDMDVD 179
HSEYP+E LA S DRK+LGSISHD MLKLWDLDD+L+GSG+ + S+ A +DSD D+MDVD
Sbjct: 262 HSEYPVERLAFSFDRKYLGSISHDQMLKLWDLDDLLQGSGSTLRSREAMADSDSDEMDVD 321
Query: 180 NK 181
K
Sbjct: 322 AK 323
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 188 | ||||||
| TAIR|locus:2040804 | 353 | WDR55 "AT2G34260" [Arabidopsis | 0.888 | 0.473 | 0.754 | 9.4e-66 | |
| UNIPROTKB|Q58DT8 | 382 | WDR55 "WD repeat-containing pr | 0.803 | 0.395 | 0.447 | 3e-30 | |
| MGI|MGI:1915186 | 388 | Wdr55 "WD repeat domain 55" [M | 0.787 | 0.381 | 0.453 | 3.8e-30 | |
| RGD|1305640 | 384 | Wdr55 "WD repeat domain 55" [R | 0.787 | 0.385 | 0.453 | 4.9e-30 | |
| UNIPROTKB|G3V1J0 | 222 | WDR55 "WD repeat domain 55, is | 0.771 | 0.653 | 0.455 | 1e-29 | |
| UNIPROTKB|Q9H6Y2 | 383 | WDR55 "WD repeat-containing pr | 0.771 | 0.378 | 0.455 | 1e-29 | |
| UNIPROTKB|B2ZZS9 | 400 | wdr55 "WD repeat-containing pr | 0.813 | 0.382 | 0.423 | 2.1e-29 | |
| UNIPROTKB|Q5R9T6 | 383 | WDR55 "WD repeat-containing pr | 0.771 | 0.378 | 0.455 | 3.4e-29 | |
| UNIPROTKB|J9P876 | 854 | IK "Uncharacterized protein" [ | 0.803 | 0.176 | 0.441 | 1.2e-28 | |
| UNIPROTKB|F1RGE2 | 873 | LOC100738153 "Uncharacterized | 0.771 | 0.166 | 0.462 | 1.7e-28 |
| TAIR|locus:2040804 WDR55 "AT2G34260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 129/171 (75%), Positives = 153/171 (89%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKL+ TSGDGTLSVCNLR + VQ++SEFSE+EL SVV+MKNGRKV+CG+Q+GT
Sbjct: 141 MTFASDSMKLVVTSGDGTLSVCNLRTSKVQSQSEFSEDELLSVVIMKNGRKVICGTQNGT 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRFV L+PNSVDALLKLDEDR+ITG +NG+ISLVGILPNRIIQPI
Sbjct: 201 LLLYSWGFFKDCSDRFVDLAPNSVDALLKLDEDRLITGCDNGIISLVGILPNRIIQPIGS 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG---NNISQAAE 168
H +YPIE LALSHD+KFLGS +HDSMLKLW+L++IL+GS N S AAE
Sbjct: 261 H-DYPIEDLALSHDKKFLGSTAHDSMLKLWNLEEILEGSNVNSGNASGAAE 310
|
|
| UNIPROTKB|Q58DT8 WDR55 "WD repeat-containing protein 55" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 68/152 (44%), Positives = 91/152 (59%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
M D LL SGDG L V N+++ + SE +LTSV LMK GRKV CGS GT
Sbjct: 174 MALDPDKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKYGRKVACGSSEGT 233
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+ L++W F SDRF L S+D ++ + E + GS +G+I V ILPNR++ + +
Sbjct: 234 IYLFNWDGFGATSDRFA-LRAESIDCMVPVTESLLCAGSTDGVIRAVNILPNRVVGSVGQ 292
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
H+E P+E+LALSH FL S HD LK WD+
Sbjct: 293 HAEEPVENLALSHCGCFLASSGHDQRLKFWDM 324
|
|
| MGI|MGI:1915186 Wdr55 "WD repeat domain 55" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 68/150 (45%), Positives = 94/150 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 180 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFN 239
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 240 WNGFGATSDRFA-LRAESIDCIVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEP 298
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDLDDI 155
+E+LALSH FL S HD LK WD+ +
Sbjct: 299 VEALALSHCGHFLASSGHDQRLKFWDMTQL 328
|
|
| RGD|1305640 Wdr55 "WD repeat domain 55" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 68/150 (45%), Positives = 93/150 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 179 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFN 238
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 239 WNGFGATSDRFA-LRAESIDCMVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEP 297
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDLDDI 155
+E LALSH FL S HD LK WD+ +
Sbjct: 298 VEELALSHCGHFLASSGHDQRLKFWDMTQL 327
|
|
| UNIPROTKB|G3V1J0 WDR55 "WD repeat domain 55, isoform CRA_b" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 67/147 (45%), Positives = 92/147 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L + N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 18 AKKLLLTASGDGCLGIFNIKRRRFELLSEPQSGDLTSVTLMKWGKKVACGSSEGTIYLFN 77
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 78 WNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEP 136
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
+E LALSH +FL S HD LK WD+
Sbjct: 137 VEELALSHCGRFLASSGHDQRLKFWDM 163
|
|
| UNIPROTKB|Q9H6Y2 WDR55 "WD repeat-containing protein 55" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 67/147 (45%), Positives = 92/147 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L + N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 179 AKKLLLTASGDGCLGIFNIKRRRFELLSEPQSGDLTSVTLMKWGKKVACGSSEGTIYLFN 238
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 239 WNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEP 297
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
+E LALSH +FL S HD LK WD+
Sbjct: 298 VEELALSHCGRFLASSGHDQRLKFWDM 324
|
|
| UNIPROTKB|B2ZZS9 wdr55 "WD repeat-containing protein 55" [Oryzias latipes (taxid:8090)] | Back alignment and assigned GO terms |
|---|
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 66/156 (42%), Positives = 96/156 (61%)
Query: 4 AADAMK--LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTV 61
A D K LL TSGDGT+ V N+++ + SEF +LTSV LMK G+KVVCGS GTV
Sbjct: 191 AVDQAKRILLTTSGDGTMGVFNIKRRRFELLSEFQSGDLTSVALMKRGKKVVCGSSEGTV 250
Query: 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121
+++W F SDRF + SVD ++ + + + T S +G I + +LPNR+I I +H
Sbjct: 251 YIFNWNGFGATSDRFA-VKAESVDCIVPITDSIMCTASMDGYIRAINLLPNRVIGCIGQH 309
Query: 122 SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157
PIE + S D +FL S +HD ++K W++ ++ K
Sbjct: 310 VGEPIEEINKSWDSRFLVSCAHDQLIKFWEISNLQK 345
|
|
| UNIPROTKB|Q5R9T6 WDR55 "WD repeat-containing protein 55" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 67/147 (45%), Positives = 91/147 (61%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 179 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKCGKKVACGSSEGTIYLFN 238
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 239 WNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEP 297
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
+ LALSH +FL S HD LK WD+
Sbjct: 298 VGELALSHCGRFLASSGHDQRLKFWDM 324
|
|
| UNIPROTKB|J9P876 IK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 68/154 (44%), Positives = 92/154 (59%)
Query: 4 AADAMK--LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTV 61
A D K LL SGDG L V N+R+ + SE +LTSV LMK G+KV CGS GT+
Sbjct: 646 ALDPSKKLLLTASGDGCLGVFNIRRRRFELLSEPQSGDLTSVTLMKYGKKVACGSSEGTI 705
Query: 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121
L++W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H
Sbjct: 706 YLFNWNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQH 764
Query: 122 SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155
+ P+E LALSH FL S HD LK W++ +
Sbjct: 765 AGEPVEKLALSHCTHFLASSGHDQRLKFWNMSQL 798
|
|
| UNIPROTKB|F1RGE2 LOC100738153 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.7e-28, P = 1.7e-28
Identities = 68/147 (46%), Positives = 92/147 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KVVCGS GT+ L++
Sbjct: 668 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKCGKKVVCGSSEGTIYLFN 727
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + GS +G+I V ILPNR++ + +H+ P
Sbjct: 728 WNGFGATSDRFA-LRAESIDCMVPVTESLLCAGSTDGVIRAVHILPNRVVGSVGQHAGEP 786
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
+E LALSH +FL S HD LK WD+
Sbjct: 787 VEKLALSHCGRFLASSGHDQRLKFWDM 813
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | estExt_fgenesh4_pm.C_LG_IV0224 | hypothetical protein (348 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.XII.1370.1 | hypothetical protein (314 aa) | • | 0.499 | |||||||
 | gw1.IV.3052.1 | hypothetical protein (207 aa) | • | 0.493 | |||||||
 | gw1.5330.2.1 | annotation not avaliable (237 aa) | • | 0.493 | |||||||
 | eugene3.00140830 | hypothetical protein (166 aa) | • | 0.492 | |||||||
 | estExt_Genewise1_v1.C_LG_II1951 | hypothetical protein (332 aa) | • | 0.492 | |||||||
 | gw1.X.5093.1 | hypothetical protein (378 aa) | • | 0.490 | |||||||
 | gw1.XII.1842.1 | hypothetical protein (346 aa) | • | 0.489 | |||||||
 | gw1.IX.47.1 | hypothetical protein (385 aa) | • | 0.488 | |||||||
 | gw1.VIII.402.1 | hypothetical protein (356 aa) | • | 0.487 | |||||||
 | eugene3.00030383 | hypothetical protein (239 aa) | • | 0.486 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 188 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ F+ D L SGDGT+ V +L + + + V +G + GS T
Sbjct: 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT 74
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS-ENGLISLVGILPNRIIQPIA 119
+ L+ +C G + V ++ + R+++ S + I + + + + +
Sbjct: 75 IRLWDLE-TGECVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132
Query: 120 EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153
H++ + S+A S D F+ S S D +KLWDL
Sbjct: 133 GHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLR 165
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 6e-09
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
+ +S DGT+ + +LR E+ SV +G K++ S GT+ L+
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD-LST 208
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIES 128
C G N V+++ + ++ GSE+G I + + +Q ++ H+ + S
Sbjct: 209 GKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-SVTS 266
Query: 129 LALSHDRKFLGSISHDSMLKLWD 151
LA S D K L S S D +++WD
Sbjct: 267 LAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-07
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVL 62
AD L S D T+ + +L + + ++SV +GR + S+ T+
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118
Query: 63 LYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEH 121
++ K C G + + V+++ + + S++G I L + + + + H
Sbjct: 119 VWDVETGK-CLTTLRGHT-DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176
Query: 122 SEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
+ + S+A S D + L S S D +KLWDL
Sbjct: 177 TG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.5 bits (106), Expect = 5e-06
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGY 68
G+S DGT+ + +LR + + ++S+ +G + GS GT+ L+
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230
Query: 69 FKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES 128
K G S + V + D + +GS +G I L + + + + S
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Query: 129 LALSHDRKFLGSISHDSMLKLWDLD 153
+A S D K L S S D ++LWDL+
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLE 314
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
L +S D T+ V ++ T + + SV +G V SQ GT+ L+
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167
Query: 70 KDCSDRFVGLSP--NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127
K C G + NSV D +++++ S +G I L + + + + H E +
Sbjct: 168 K-CVATLTGHTGEVNSVAFSP--DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH-ENGVN 223
Query: 128 SLALSHDRKFLGSISHDSMLKLWDLDD-----ILKGSGNNISQAA 167
S+A S D L S S D +++WDL L G N+++ A
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLA 268
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 2/146 (1%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
+ S DGT+ + +L + + + +G + GS GT+ L+
Sbjct: 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS 273
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIES 128
G S + + D + +GS +G + L + +++ + E P+ S
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333
Query: 129 LALSHDRKFL-GSISHDSMLKLWDLD 153
L+ S D L S D ++LWDL
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDLR 359
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 188 | |||
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.98 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.94 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.94 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.94 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.93 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.93 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.93 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.92 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.92 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.92 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.92 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.92 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.91 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.91 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.91 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.9 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.9 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.89 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.89 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.89 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.89 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.89 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.89 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.88 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.88 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.88 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.88 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.87 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.87 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.87 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.87 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.86 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.86 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.85 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.84 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.84 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.83 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.82 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.82 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.82 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.81 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.81 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.81 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.81 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.81 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.81 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.8 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.79 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.79 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.79 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.79 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.79 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.78 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.77 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.77 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.77 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.77 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.76 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.75 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.75 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.75 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.74 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.74 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.74 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.73 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.73 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.73 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.72 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.71 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.7 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.7 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.68 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.68 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.67 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.66 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.66 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.66 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.65 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.65 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.64 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.62 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.61 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.6 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.59 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.59 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.58 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.58 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.57 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.57 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.57 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.56 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.56 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.56 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.56 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.56 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.55 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.55 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.55 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.53 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.51 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.5 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.49 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.47 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.47 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.47 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.46 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.45 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.45 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.44 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.43 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.43 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.39 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.38 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.38 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.36 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.34 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.33 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.32 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.32 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.3 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.26 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.26 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.25 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.24 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.23 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.23 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.23 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.22 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.2 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.19 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.18 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.16 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.16 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.15 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.15 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.14 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.13 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.13 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.13 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.09 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.08 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.07 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.02 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.02 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.01 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.01 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.0 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.0 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.98 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.97 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.96 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.95 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.94 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.94 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.93 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.92 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.88 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.86 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.86 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.81 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.81 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.8 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.79 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.79 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.77 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.75 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.74 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.74 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.74 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.69 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.68 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.66 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.66 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.65 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.62 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.62 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.61 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.57 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.55 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.54 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.53 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.52 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.5 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.48 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.47 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.46 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.46 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.44 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.43 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.42 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.42 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.36 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.36 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.34 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.34 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.31 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.29 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 98.27 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.21 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.21 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.2 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.19 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.18 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.17 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.14 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.14 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 98.11 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.08 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.08 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.07 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.03 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.99 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.96 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.96 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.95 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.94 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.93 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.92 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.89 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.82 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.81 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.8 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.75 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.69 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.68 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.64 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.59 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.58 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.56 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.54 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.54 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.53 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.49 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.46 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.45 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.42 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.42 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.39 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.35 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.33 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.28 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 97.21 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.21 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.03 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.02 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 97.01 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 97.01 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.01 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.99 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.99 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.99 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.98 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.93 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.89 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.88 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.86 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.84 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.79 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.71 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.67 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 96.63 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.62 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.58 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.53 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.53 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.5 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.44 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.39 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.34 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.27 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.21 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.2 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 96.06 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.01 | |
| PRK10115 | 686 | protease 2; Provisional | 95.92 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.89 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.87 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 95.75 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.75 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.64 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.63 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.53 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.52 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 95.49 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.47 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.39 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.39 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.38 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.37 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.32 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.25 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.08 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.01 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 95.0 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 94.79 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.69 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.59 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.57 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.37 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.28 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.26 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.17 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.98 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.74 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 93.69 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 93.62 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 93.55 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.21 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 93.18 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.88 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.68 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 92.57 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 92.49 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 92.26 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.07 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 91.82 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 91.7 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 91.66 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 91.56 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 91.53 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 91.4 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 91.36 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 91.31 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 90.78 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 90.63 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.38 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 90.2 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.96 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 89.92 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 89.9 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 89.87 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.63 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.61 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 89.46 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 89.39 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 89.33 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 89.25 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 88.29 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 88.04 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 87.74 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 87.71 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.57 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 87.47 | |
| PLN02193 | 470 | nitrile-specifier protein | 87.12 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 86.74 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 86.69 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 85.76 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 84.62 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 83.6 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 83.44 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 82.74 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 82.21 | |
| PRK10115 | 686 | protease 2; Provisional | 82.11 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 80.29 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 80.23 |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=198.92 Aligned_cols=157 Identities=23% Similarity=0.205 Sum_probs=146.7
Q ss_pred Ceeecc--cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
+.|+|. +..||+|+.||++++|++.+..++..+.+|..+|..++|+|+|++|.+++.|.+-++||+.+ +..+....+
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-k~ElL~QEG 301 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-KSELLLQEG 301 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccccc-chhhHhhcc
Confidence 468886 66899999999999999999999999999999999999999999999999999999999987 577777889
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|...|.++ |+|||.++++|+.|..-+|||++++.++..+.+|.. +|.+++|+|+|-.|++|+.|++++|||++....
T Consensus 302 -Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 302 -HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred -cccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 99999999 899999999999999999999999999999999987 899999999999999999999999999998776
Q ss_pred CCC
Q 029743 158 GSG 160 (188)
Q Consensus 158 ~~~ 160 (188)
...
T Consensus 380 ly~ 382 (459)
T KOG0272|consen 380 LYT 382 (459)
T ss_pred cee
Confidence 443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=193.38 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=142.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|+|+.|++|+.|.++++||+.+..+..+.++|...|.+++|+|||+.|++|+.||+|++||..++++..+.+.+ |
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g-H 199 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG-H 199 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC-c
Confidence 479999999999999999999999999999999999999999999999999999999999999999888888889999 9
Q ss_pred CCceeEE-ee-----cCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 81 PNSVDAL-LK-----LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 81 ~~~v~~~-~~-----~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
...|+++ |. |..++|++++.||.|+|||+..+.++..+.+|.. +|+|+.|--+| +|++++.|++|++|+...
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALD 277 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccc
Confidence 9999999 64 5678999999999999999999999999999977 89999997554 889999999999999887
Q ss_pred cc
Q 029743 155 IL 156 (188)
Q Consensus 155 ~~ 156 (188)
+.
T Consensus 278 G~ 279 (480)
T KOG0271|consen 278 GK 279 (480)
T ss_pred hh
Confidence 54
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=197.73 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=150.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.|||..+++|+.|..-+|||+++ ++++..+.+ |
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~g-H 344 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAG-H 344 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecc-c
Confidence 58999999999999999999999999998888889999999999999999999999999999999998 689999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
..+|..+ |+|+|..+++|+.|++++|||++..+.+.++.+|.. -|+.+.|+| .|.+|++++.|++++||...+..+.
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 9999999 999999999999999999999999999999999987 899999998 7889999999999999999998876
Q ss_pred CCCC
Q 029743 159 SGNN 162 (188)
Q Consensus 159 ~~~~ 162 (188)
..+.
T Consensus 424 ksLa 427 (459)
T KOG0272|consen 424 KSLA 427 (459)
T ss_pred hhhc
Confidence 6554
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=205.08 Aligned_cols=155 Identities=22% Similarity=0.285 Sum_probs=147.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
..|+|+.++|++++.|+++++|.+.+..++-..++|..+|+.+.|+|.|.++++++.|++.++|..+. ..+++.+.+ |
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlRifag-h 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLRIFAG-H 534 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchhhhcc-c
Confidence 36999999999999999999999999999888899999999999999999999999999999999986 688999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
-..+.|+ |+|+..|+++|+.|.+|++||+.+|..++.|.+|.+ +|.+++|+|+|++|++|+.|+.|++||+.++...
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence 9999999 999999999999999999999999999999999977 9999999999999999999999999999986543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=203.41 Aligned_cols=155 Identities=24% Similarity=0.329 Sum_probs=147.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.|+|.|-++|+++.|++.++|......+++.+.+|-+.|.|+.|+|+..++++|+.|.++++||+.+ +..++.+.+ |
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~G-H 576 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTG-H 576 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecC-C
Confidence 46999999999999999999999999999999999999999999999999999999999999999986 688999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.++|.++ |+|+|++|++|+.||.|.+||+.+++.+.++.+|.+ .|.++.|+.+|..|++++.|+.|++||+......
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999 899999999999999999999999999999999966 8999999999999999999999999999876654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=177.72 Aligned_cols=158 Identities=19% Similarity=0.248 Sum_probs=142.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++.++||++.++++.|+++++||+.+++..+.|.+|...|.+++|+||.+.+++|+.|.+|++|+.- +.+..++.. .
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~--g~ck~t~~~-~ 145 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL--GVCKYTIHE-D 145 (315)
T ss_pred eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec--ccEEEEEec-C
Confidence 4678999999999999999999999999999999999999999999999999999999999999986 455555544 3
Q ss_pred --CCceeEE-eecC--CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 81 --PNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 81 --~~~v~~~-~~~~--~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
...|.|+ |+|+ ..++++++.|++|++||+++.+....+.+|.+ -++.++++|||..+++|+.||.+.+||++..
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 6789999 9987 78999999999999999999999999999987 7999999999999999999999999999988
Q ss_pred cCCCCCC
Q 029743 156 LKGSGNN 162 (188)
Q Consensus 156 ~~~~~~~ 162 (188)
+......
T Consensus 225 k~lysl~ 231 (315)
T KOG0279|consen 225 KNLYSLE 231 (315)
T ss_pred ceeEecc
Confidence 7654443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9e-32 Score=187.55 Aligned_cols=185 Identities=19% Similarity=0.270 Sum_probs=147.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee-eeecccccceEEEEEEe-----CCCEEEEecCCCeEEEEEeCCc-----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF----- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~----- 69 (188)
++|+|||+.||+|+.||+|++||.++|+.+ ..+.+|...|++++|.| ..++|++++.||.++|||+...
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 579999999999999999999999987654 56778988999999876 4467777777888888877532
Q ss_pred --------------------------------------------------------------------------------
Q 029743 70 -------------------------------------------------------------------------------- 69 (188)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (188)
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence
Q ss_pred ----------------------------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee
Q 029743 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (188)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~ 114 (188)
.+++....+ |...|..+ |+||++++++++-|..|++|+.++|+.
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg-Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG-HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc-hhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 122223346 77778888 899999999999999999999999999
Q ss_pred eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCC-Ccc---ccccCCCCCCCCC--CCCCccccc
Q 029743 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN-ISQ---AAESDSDGDDMDV--DNKGFPFWT 187 (188)
Q Consensus 115 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~---~~~~~~~~~~~~~--~~~~~p~~~ 187 (188)
+..|++|-. +|+.++|+.|.+.|++++.|.++++|++++......++ |.+ .-+...|++...- .++.+.+|.
T Consensus 402 lasfRGHv~-~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 402 LASFRGHVA-AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhhhccc-eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999976 89999999999999999999999999999998877776 544 2234444433322 345566664
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=190.29 Aligned_cols=157 Identities=25% Similarity=0.394 Sum_probs=144.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEc-CCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
++|+|+++++++++.|.+|+|||+ ..+..++++.+|...|++++|+|+++.+++|+.|++|++||++. +.+...+.+
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~- 286 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRKLKG- 286 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEeeec-
Confidence 579999999999999999999999 45688899999999999999999999999999999999999987 799999999
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCe--eeeecccCCCc-ceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
|...+.++ |++++.++++++.|+.|++||+.++. ++..+..+... +++.+.|+|++.+++++..|+.+++||+...
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999 89999999999999999999999998 66777777553 5899999999999999999999999999977
Q ss_pred cCCC
Q 029743 156 LKGS 159 (188)
Q Consensus 156 ~~~~ 159 (188)
....
T Consensus 367 ~~~~ 370 (456)
T KOG0266|consen 367 KSVG 370 (456)
T ss_pred ccee
Confidence 5443
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=191.31 Aligned_cols=155 Identities=21% Similarity=0.360 Sum_probs=145.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc--eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
+.|+|+|+++++++.++.+++|+..... .+..+.+|...|..++|+|+++++++++.|+++++||+...+..++++.+
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 3689999999999999999999997766 66777899999999999999999999999999999999655688999999
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|...++++ |+|+|+++++|+.|++|++||+++++++..+.+|.+ .|++++|++++.+|++++.|+.|++||+.+...
T Consensus 245 -H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 245 -HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred -CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 99999999 899999999999999999999999999999999987 899999999999999999999999999999883
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=163.56 Aligned_cols=155 Identities=22% Similarity=0.295 Sum_probs=130.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------- 69 (188)
+.|..+|+++++|+.||+++|||++...+.+.++ |.++|+++..+|+...|+++..+|.|++||+...
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 3578899999999999999999999977766665 7799999999999999999999999999999642
Q ss_pred -------------------------------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc
Q 029743 70 -------------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 70 -------------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
-.++..++. |...+..+ +||++++|++++.|.+++||+.++
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 011222334 55555555 899999999999999999999988
Q ss_pred C-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 112 N-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 112 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
. +....+.+|.. .++..+|+.||++|++++.|+.+++|+++..+..
T Consensus 247 ~~kle~~l~gh~r-WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 247 FFKLELVLTGHQR-WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceeeEEEeecCCc-eEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 7 66677888865 8999999999999999999999999999987643
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=170.99 Aligned_cols=154 Identities=19% Similarity=0.261 Sum_probs=145.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+++.|-.+++++|+.|++++|||+.+|++..++.+|-..|..+++++--.++++++.|++|+.||+.. .+.++.+.+ |
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~-nkvIR~YhG-H 234 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY-NKVIRHYHG-H 234 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh-hhhHHHhcc-c
Confidence 46789899999999999999999999999999999999999999999999999999999999999986 588888999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
-..|.|+ .+|.-..|++|+.|.++++||+++...+..+.+|.. +|..+.+.|....+++++.|++|++||+..+..
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt 311 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT 311 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCceEEecCCceEEEeeeccCce
Confidence 9999999 799999999999999999999999999999999977 999999999888999999999999999987653
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=165.48 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=144.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 74 (188)
++|+|.|+++|+|+.|+...||++.+. +..+.+.+|.+.+.++.|-+ ..+|++++.|.+..+||+++ ++.++
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~-g~~~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET-GQQTQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc-ceEEE
Confidence 479999999999999999999999854 34567889999999999987 56789999999999999987 68889
Q ss_pred eeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.+.+ |.+.|.++ ++| +++.+++|+-|+..+|||++.+.++++|.+|.. .|++++|.|+|.-+++|+.|++.++||+
T Consensus 181 ~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 181 VFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEee
Confidence 9999 99999999 788 999999999999999999999999999999965 8999999999999999999999999999
Q ss_pred CCccCCCCCCC
Q 029743 153 DDILKGSGNNI 163 (188)
Q Consensus 153 ~~~~~~~~~~~ 163 (188)
+........++
T Consensus 259 RaD~~~a~ys~ 269 (343)
T KOG0286|consen 259 RADQELAVYSH 269 (343)
T ss_pred cCCcEEeeecc
Confidence 98766555543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=174.12 Aligned_cols=162 Identities=18% Similarity=0.309 Sum_probs=146.8
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeec--------ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 73 (188)
.|||||++|++|+.||-|.+||..+|+..+.++ -+..+|.|+.|+.|..++++|+.||.|++|.+.+ +.++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-GQCL 298 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-chHH
Confidence 599999999999999999999999887655433 4678999999999999999999999999999987 7999
Q ss_pred ceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
+.+...|...++|+ |+.|+..+++++.|.++++..+.+|+++..+.+|+. -|+...|.++|.++++++.||+|++|+.
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~ 377 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHHIISASSDGTVKVWHG 377 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCeEEEecCCccEEEecC
Confidence 99984499999999 999999999999999999999999999999999987 6999999999999999999999999999
Q ss_pred CCccCCCCCCCcc
Q 029743 153 DDILKGSGNNISQ 165 (188)
Q Consensus 153 ~~~~~~~~~~~~~ 165 (188)
++..+........
T Consensus 378 KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 378 KTTECLSTFKPLG 390 (508)
T ss_pred cchhhhhhccCCC
Confidence 9988766555433
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=167.44 Aligned_cols=162 Identities=16% Similarity=0.226 Sum_probs=147.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.|-|.|.++++++.|.+|+.|++.++.++.++++|...|..+..+.||..+++++.|.++++|-+.+ +++...++. |
T Consensus 199 V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~-h 276 (406)
T KOG0295|consen 199 VFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCKAELRE-H 276 (406)
T ss_pred EEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc-chhhhhhhc-c
Confidence 35778999999999999999999999999999999999999999999999999999999999999986 678888888 8
Q ss_pred CCceeEE-eecC---------------CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 81 PNSVDAL-LKLD---------------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 81 ~~~v~~~-~~~~---------------~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
..++.|+ |.|. ++++.+++.|++|++||+.++.++.++.+|.. .|.+++|+|-|++|+++..|
T Consensus 277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecC
Confidence 8888888 5321 25899999999999999999999999999966 89999999999999999999
Q ss_pred CcEEEEeCCCccCCCCCCCcc
Q 029743 145 SMLKLWDLDDILKGSGNNISQ 165 (188)
Q Consensus 145 ~~i~iwd~~~~~~~~~~~~~~ 165 (188)
+++++||+++.++....+..+
T Consensus 356 ktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 356 KTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred CcEEEEEeccceeeeccCCCc
Confidence 999999999998877665333
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=160.13 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=136.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC--ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC--ccccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~ 76 (188)
++|+|.|++|++|+.|.++.||.-..+ +++..+.+|...|.+++|+++|++|++++.|+.|.+|.+.. .-.+...+
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 589999999999999999999986654 67888999999999999999999999999999999999973 34677888
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecc---cCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL---PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
++ |...|..+ |+|...+|++++.|++|++|.-. ...+..++.+|.. .|++++|++.|..|++++.|++|+||..
T Consensus 147 ~~-HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 147 QE-HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cc-ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeee
Confidence 99 99999988 89999999999999999999865 3468899999976 8999999999999999999999999985
Q ss_pred C
Q 029743 153 D 153 (188)
Q Consensus 153 ~ 153 (188)
.
T Consensus 225 ~ 225 (312)
T KOG0645|consen 225 Y 225 (312)
T ss_pred c
Confidence 4
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=161.54 Aligned_cols=160 Identities=19% Similarity=0.277 Sum_probs=136.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
++|+||.+.+++|+.|.+|++|+........... .+.+.|+|+.|+|+ ..+|++++.|+++++||+++ .+....+.
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~ 189 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFI 189 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccc
Confidence 5799999999999999999999987655444333 23789999999997 67899999999999999986 57778888
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+ |.+.++.+ ++|||.++++|+.||.+.+||++.++.+..+.+. . .|.+++|+|+.-.|+.+ .+..|+|||+.+..
T Consensus 190 g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~-~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 190 G-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-D-IVNSLCFSPNRYWLCAA-TATSIKIWDLESKA 265 (315)
T ss_pred c-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-C-eEeeEEecCCceeEeec-cCCceEEEeccchh
Confidence 9 99999999 8999999999999999999999999999888766 4 79999999997666655 45569999999887
Q ss_pred CCCCCCCcc
Q 029743 157 KGSGNNISQ 165 (188)
Q Consensus 157 ~~~~~~~~~ 165 (188)
....+..+.
T Consensus 266 ~v~~l~~d~ 274 (315)
T KOG0279|consen 266 VVEELKLDG 274 (315)
T ss_pred hhhhccccc
Confidence 665554443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-28 Score=179.63 Aligned_cols=152 Identities=18% Similarity=0.295 Sum_probs=137.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+++||||+++|+|+.||+|+|||...+.+..++..|++.|+.+.|+..++.+++++-||+|+.||+.. .+..++++. .
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~-P 433 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTS-P 433 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecC-C
Confidence 57999999999999999999999999999999999999999999999999999999999999999975 577788875 3
Q ss_pred C-CceeEE-eecCCCEEEEecCCC-eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 81 P-NSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 81 ~-~~v~~~-~~~~~~~l~~~~~d~-~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
. ....|+ ..|.|.++.+|+.|. .|.+|++++|+.+-.+.+|.+ ||.+++|+|.+..|++++.|.+|++||+-..
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-PVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-cceeeEEccccCeEEeccccceEEEEEeecc
Confidence 2 334455 478899999998765 599999999999999999966 9999999999999999999999999998655
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=171.67 Aligned_cols=159 Identities=20% Similarity=0.291 Sum_probs=137.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------- 69 (188)
|+|+.+|..||+|+.||.++||+.. |..+.++..|.++|.++.|+..|++|++++.|+++.+||..++
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSA 319 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence 5799999999999999999999954 6667788899999999999999999999999999999998432
Q ss_pred -----------------------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEec----------
Q 029743 70 -----------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI---------- 109 (188)
Q Consensus 70 -----------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~---------- 109 (188)
..+..++.+ |.+.|.++ |+|.|.+|++++.|++++||+.
T Consensus 320 ~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 320 PALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred CccceEEecCceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence 345556778 99999999 9999999999999999999985
Q ss_pred -----------------------------------------ccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 110 -----------------------------------------LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 110 -----------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
..+.++.+|..|.. +|++++|+|+|+++++|+.||.|.
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeE
Confidence 22345667777866 999999999999999999999999
Q ss_pred EEeCCCccCCCCCC
Q 029743 149 LWDLDDILKGSGNN 162 (188)
Q Consensus 149 iwd~~~~~~~~~~~ 162 (188)
+|++++....+...
T Consensus 478 iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 478 IWSTKTGKLVKSYQ 491 (524)
T ss_pred eccccchheeEeec
Confidence 99999987665544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=175.32 Aligned_cols=157 Identities=14% Similarity=0.228 Sum_probs=140.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeeccc-ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
|.|++++.++++|+.+|.|++|+...... +.++.| ...|.+++|+|+...|++++.|++|+|||... ....+.+.+
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-~kee~vL~G- 220 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-PKEERVLRG- 220 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchhhh-HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-Cchhheecc-
Confidence 46899999999999999999999775543 455554 48999999999999999999999999999986 355567799
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
|...+.++ |+|.-.++++|+.|+.|++||.++++++.++.+|+. .|..+.|++++++|++++.|..+++||+++++..
T Consensus 221 HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 99999999 999999999999999999999999999999999987 8999999999999999999999999999966544
Q ss_pred CCC
Q 029743 159 SGN 161 (188)
Q Consensus 159 ~~~ 161 (188)
...
T Consensus 300 ~~~ 302 (464)
T KOG0284|consen 300 FTY 302 (464)
T ss_pred HHh
Confidence 433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=177.28 Aligned_cols=154 Identities=13% Similarity=0.227 Sum_probs=133.2
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCC-------ceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
++|+| ++++|++|+.|++|++||+..+ .++..+.+|...|.+++|+|++ ++|++++.|+.|++||+.. +.
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-g~ 159 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-GK 159 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-Ce
Confidence 47999 8899999999999999999764 3456778999999999999975 7999999999999999986 46
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe----CCCc
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS----HDSM 146 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~ 146 (188)
.+..+.+ |...+.++ |+|+|.+|++++.|+.|++||+++++.+..+.+|.+..+..+.|.+++..+++++ .|+.
T Consensus 160 ~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 160 AVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred EEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 6777888 88999999 8999999999999999999999999998888888653455778999888877654 4789
Q ss_pred EEEEeCCCcc
Q 029743 147 LKLWDLDDIL 156 (188)
Q Consensus 147 i~iwd~~~~~ 156 (188)
|++||+++..
T Consensus 239 VklWDlr~~~ 248 (493)
T PTZ00421 239 IMLWDTRKMA 248 (493)
T ss_pred EEEEeCCCCC
Confidence 9999998754
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=159.30 Aligned_cols=149 Identities=17% Similarity=0.244 Sum_probs=135.5
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~- 78 (188)
|+++| +++.+++|+-|...++||++.+.+.+.|.+|...|+++.|.|+|.-|++|+.|++.++||++.. +.+..+..
T Consensus 192 lsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~ 270 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYSHD 270 (343)
T ss_pred EecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeeccC
Confidence 46788 9999999999999999999999999999999999999999999999999999999999999974 55555543
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
....+++++ |+..|++|++|..|..+.+||.-.++.+..+.+|.. +|+++..+|||.-+++|+.|.+++||.
T Consensus 271 ~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN-RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 271 SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN-RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC-eeEEEEECCCCcEEEecchhHheeecC
Confidence 023568888 899999999999999999999999999999999966 899999999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=174.86 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=144.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++++|+.+++|+|+.|.+.+||+++......++.+|...|+++.|+|..+.+++++.|++|+||.+.+ ..+++++.+ |
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eG-H 546 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEG-H 546 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecC-c
Confidence 47899999999999999999999999999999999999999999999999999999999999999987 699999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
...|..+ |-.+|+.|++++.||.|++|++.++.|..++.+|.+ .|++++.++...++++|+.||.|.+|.=.+.
T Consensus 547 ~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 547 TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-RVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc-eeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9998888 889999999999999999999999999999999988 8999999999999999999999999975544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=166.75 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=143.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|||+...+++++.||+|+|||....+....+.+|.-.|.+++|+|....|++++.|..|++||.++ +.++.++.+ |
T Consensus 186 lafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~-H 263 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHG-H 263 (464)
T ss_pred eccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhh-c
Confidence 58999999999999999999999998888888899999999999999999999999999999999987 799999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
+..|..+ |+|++++|++++.|..++++|+++.+.++.+++|.. .|+++.|+| ....|.+++.||.|..|.+....+.
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-hheeeccccccccceeeccCCCceEEEeccccccc
Confidence 9999999 999999999999999999999999889999999987 799999999 5567889999999999998844443
Q ss_pred C
Q 029743 159 S 159 (188)
Q Consensus 159 ~ 159 (188)
.
T Consensus 343 ~ 343 (464)
T KOG0284|consen 343 G 343 (464)
T ss_pred c
Confidence 3
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=152.19 Aligned_cols=149 Identities=15% Similarity=0.259 Sum_probs=133.6
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc-ccceeeeccCCcee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRFVGLSPNSVD 85 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~v~ 85 (188)
.-+|++++.|.+|++|...+|.+.++++-..+.|..+...|+++.|++++.. .|++||++.... ++..+.+ |...|+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~-h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEG-HTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEec-cCCceE
Confidence 4578999999999999999999999999777899999999999999988865 799999987544 8889999 999999
Q ss_pred EE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 86 AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 86 ~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
++ |..+|+.+++|+.||+++|||++...+-+.+... . +|+++..+|+...|+++..+|.|++||+.......
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-s-pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-S-PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH 160 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-C-CcceEEecCCcceEEeecCCCcEEEEEccCCcccc
Confidence 99 9999999999999999999999997776666644 3 89999999999999999999999999999875443
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=150.91 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=133.0
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCC---ceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC-cccccc
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN---TVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSD 74 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~---~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~ 74 (188)
++|+|- |..||+++.|..|++|+...+ .+...+. +|...|.+++|+|.|++|++++.|.++.||.-.. .-+++.
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEe
Confidence 478997 889999999999999998853 3333343 7999999999999999999999999999998643 237788
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC---eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
++.+ |...|.|+ |+++|.+|++++.|+.|.+|.+..+ ++...++.|.. .|..+.|+|....|++++.|++|++|
T Consensus 100 ~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~dlL~S~SYDnTIk~~ 177 (312)
T KOG0645|consen 100 TLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTEDLLFSCSYDNTIKVY 177 (312)
T ss_pred eeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCcceeEEeccCCeEEEE
Confidence 8999 99999999 8999999999999999999998743 47788899987 89999999999999999999999999
Q ss_pred eCC
Q 029743 151 DLD 153 (188)
Q Consensus 151 d~~ 153 (188)
.-.
T Consensus 178 ~~~ 180 (312)
T KOG0645|consen 178 RDE 180 (312)
T ss_pred eec
Confidence 876
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=168.33 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=143.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC-ceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++.+|..-++++++.|-.|++||.+.+ .+.+++.+|...|.+++|+| |.+.+++++-|++|++|.+.. ..+..++++
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g 181 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG 181 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec
Confidence 467898899999999999999999865 77889999999999999999 668999999999999999986 578889999
Q ss_pred ccCCceeEE-ee--cCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 79 LSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 79 ~~~~~v~~~-~~--~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
|...|.|+ +- +|-.+|++|+.|.+|++||.++..|++++.+|.. .|+.+.|+|.-..+++|+.||+++||+..+-
T Consensus 182 -HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 182 -HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred -cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 99999999 63 4667999999999999999999999999999987 8999999999999999999999999998887
Q ss_pred cCCCCC
Q 029743 156 LKGSGN 161 (188)
Q Consensus 156 ~~~~~~ 161 (188)
..+..+
T Consensus 260 ~lE~tL 265 (794)
T KOG0276|consen 260 KLEKTL 265 (794)
T ss_pred ehhhhh
Confidence 655543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=174.34 Aligned_cols=157 Identities=14% Similarity=0.277 Sum_probs=148.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|..-+++++-.+|.|++||.+.+.++..+..|.++|..++|+|++..+++|+.|..|++|+..+ .+++.++.+ |
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL~G-H 92 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTLLG-H 92 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhhcc-c
Confidence 57999999999999999999999999999999999999999999999999999999999999999986 799999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
-..|+.+ |++.-..+++++.|.+|+||+.++++++..+++|.. -|.|..|+|....+++++.|.+|+|||+.......
T Consensus 93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 9999999 799999999999999999999999999999999977 69999999999999999999999999998776544
Q ss_pred C
Q 029743 160 G 160 (188)
Q Consensus 160 ~ 160 (188)
.
T Consensus 172 ~ 172 (1202)
T KOG0292|consen 172 K 172 (1202)
T ss_pred C
Confidence 3
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=165.35 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=140.4
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCC-CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..+|..++|+++|..+.+++.|+.+++||+++ ++++..+.
T Consensus 221 ~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET-G~~~~~f~-- 297 (503)
T KOG0282|consen 221 QWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET-GQVLSRFH-- 297 (503)
T ss_pred hhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc-ceEEEEEe--
Confidence 4677 789999999999999999976 899999999999999999999999999999999999999987 67777776
Q ss_pred cCCceeEE-eecCC-CEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 80 SPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 80 ~~~~v~~~-~~~~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
....++|+ |+|++ +.+++|+.|+.|+.||+++++.++.+..|-+ .|..+.|-++++++++.+.|+.++||+.+....
T Consensus 298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ 376 (503)
T KOG0282|consen 298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRRFISSSDDKSVRIWENRIPVP 376 (503)
T ss_pred cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence 46678888 99988 7899999999999999999999999988876 899999999999999999999999999987765
Q ss_pred CC
Q 029743 158 GS 159 (188)
Q Consensus 158 ~~ 159 (188)
..
T Consensus 377 ik 378 (503)
T KOG0282|consen 377 IK 378 (503)
T ss_pred ch
Confidence 44
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=165.33 Aligned_cols=151 Identities=14% Similarity=0.153 Sum_probs=123.5
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCCc--------eeeeecccccceEEEEEEeCCCE-EEEecCCCeEEEEEeCCcc
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFK 70 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~ 70 (188)
++|+|+ +++|++|+.|++|+||++.++. ++..+.+|...|.+++|+|++.. |++++.|+.|++||++..
T Consensus 80 lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg- 158 (568)
T PTZ00420 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE- 158 (568)
T ss_pred EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-
Confidence 479996 7899999999999999997542 23456789999999999998875 578999999999999863
Q ss_pred cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeE-----EEeeCCCCEEEEEeCC
Q 029743 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-----LALSHDRKFLGSISHD 144 (188)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~d 144 (188)
.....+. +...+.++ |+|+|.+|++++.|+.|++||+++++.+.++.+|.+ .+.. ..|++++.+|++++.+
T Consensus 159 ~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-~~~s~~v~~~~fs~d~~~IlTtG~d 235 (568)
T PTZ00420 159 KRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG-GKNTKNIWIDGLGGDDNYILSTGFS 235 (568)
T ss_pred cEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccC-CceeEEEEeeeEcCCCCEEEEEEcC
Confidence 4444443 45678888 899999999999999999999999999989988865 3322 3355888999988876
Q ss_pred C----cEEEEeCCCc
Q 029743 145 S----MLKLWDLDDI 155 (188)
Q Consensus 145 ~----~i~iwd~~~~ 155 (188)
+ .|+|||+++.
T Consensus 236 ~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 236 KNNMREMKLWDLKNT 250 (568)
T ss_pred CCCccEEEEEECCCC
Confidence 4 7999999964
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=158.19 Aligned_cols=149 Identities=15% Similarity=0.208 Sum_probs=138.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC---------CEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG---------RKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
|.|+|.|.+|++++.|++++||+.........+.+|...|..+.|+|.| ..+++++.|++|++||+.. +.
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv 443 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GV 443 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-Cc
Confidence 4689999999999999999999998888888999999999999999975 3689999999999999986 68
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
++..+.. |..+|+++ |+|+|+++++|+.||.|.+|++++++..+.+.+. + .|..++|+.+|.+|..+-.|+.+.+-
T Consensus 444 ~i~~f~k-H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~-~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 444 PIHTLMK-HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-G-GIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred eeEeecc-CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-C-eEEEEEEcCCCCEEEEEecCCCceEE
Confidence 8999988 99999999 8999999999999999999999999999999877 4 59999999999999999999999999
Q ss_pred eCC
Q 029743 151 DLD 153 (188)
Q Consensus 151 d~~ 153 (188)
|++
T Consensus 521 dlr 523 (524)
T KOG0273|consen 521 DLR 523 (524)
T ss_pred Eec
Confidence 986
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=153.99 Aligned_cols=148 Identities=16% Similarity=0.260 Sum_probs=137.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC---------------CCEEEEecCCCeEEEEEe
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---------------GRKVVCGSQSGTVLLYSW 66 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~d~~i~~~d~ 66 (188)
+.+.||.++|+++.|.+|++|-+.++++...+..|..+|.+++|.|. +.++.+++.|++|++||+
T Consensus 242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 242 RVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred EecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence 45679999999999999999999999998999999999999999874 248899999999999999
Q ss_pred CCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC
Q 029743 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (188)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 145 (188)
.+ +.++.++.+ |...|+.+ |+|.|+||+++..|+++++||++++++...+..|.. -|+++.|+.+..++++|+.|.
T Consensus 322 ~t-g~cL~tL~g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h-fvt~lDfh~~~p~VvTGsVdq 398 (406)
T KOG0295|consen 322 ST-GMCLFTLVG-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH-FVTSLDFHKTAPYVVTGSVDQ 398 (406)
T ss_pred cC-CeEEEEEec-ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc-eeEEEecCCCCceEEeccccc
Confidence 87 699999999 99999999 899999999999999999999999999999999976 699999999999999999999
Q ss_pred cEEEEeC
Q 029743 146 MLKLWDL 152 (188)
Q Consensus 146 ~i~iwd~ 152 (188)
.+++|.-
T Consensus 399 t~KvwEc 405 (406)
T KOG0295|consen 399 TVKVWEC 405 (406)
T ss_pred eeeeeec
Confidence 9999974
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=151.19 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=135.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC-CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+.|+|+|.+|++|+.|..|.+|++.. .+-...+++|.++|..+.|.+++..+++++.|.+++.||+++ ++..+.+++
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t-G~~~rk~k~- 130 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET-GKRIRKHKG- 130 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc-ceeeehhcc-
Confidence 36999999999999999999999654 345567789999999999999999999999999999999987 688888888
Q ss_pred cCCceeEEe-ecCC-CEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 80 SPNSVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 80 ~~~~v~~~~-~~~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|...+..+. ...| .++.+++.|+++++||+++..+++++... ++++++.|..++..+.+|+-|+.|++||+++...
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc--eeEEEEEecccccceeeccccCceeeeccccCcc
Confidence 988888884 3334 46778899999999999999999888655 3799999999999999999999999999987665
Q ss_pred CCC
Q 029743 158 GSG 160 (188)
Q Consensus 158 ~~~ 160 (188)
...
T Consensus 209 ~~~ 211 (338)
T KOG0265|consen 209 LYT 211 (338)
T ss_pred eEE
Confidence 443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=163.51 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=126.1
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCcee-------------eeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCC
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-------------TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~ 68 (188)
.++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|++|++||+..
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 3456666676666666666665433211 13568999999999999 889999999999999999965
Q ss_pred cc------cccceeeeccCCceeEE-eecCC-CEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEE
Q 029743 69 FK------DCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 69 ~~------~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
.+ .++..+.+ |...|.++ |+|++ .+|++++.|+.|++||+++++.+..+.+|.. .|.+++|+|++.+|++
T Consensus 108 ~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-~V~sla~spdG~lLat 185 (493)
T PTZ00421 108 EGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-QITSLEWNLDGSLLCT 185 (493)
T ss_pred CccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-ceEEEEEECCCCEEEE
Confidence 32 34567888 99999999 89975 6999999999999999999999889988876 8999999999999999
Q ss_pred EeCCCcEEEEeCCCccC
Q 029743 141 ISHDSMLKLWDLDDILK 157 (188)
Q Consensus 141 ~~~d~~i~iwd~~~~~~ 157 (188)
++.|+.|++||+++...
T Consensus 186 gs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 186 TSKDKKLNIIDPRDGTI 202 (493)
T ss_pred ecCCCEEEEEECCCCcE
Confidence 99999999999987653
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=169.76 Aligned_cols=150 Identities=19% Similarity=0.259 Sum_probs=129.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC--------------------------------C---------------------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------------------------------N--------------------- 27 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~--------------------------------~--------------------- 27 (188)
|.||+||+|||+|+.|+.|+||.+.. .
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 46999999999999999999998754 0
Q ss_pred -------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eec-CCCEEEEe
Q 029743 28 -------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITG 98 (188)
Q Consensus 28 -------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~ 98 (188)
++++.+.+|.+.|..+.|+. .++|++++.|.+|+||++.. ..++..|. |...|+|+ |+| |.+|+++|
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~-~~CL~~F~--HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGR-KECLKVFS--HNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred ccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCC-cceeeEEe--cCCeeEEEEecccCCCcEeec
Confidence 02225568999999999997 46889999999999999975 68888887 89999999 898 88999999
Q ss_pred cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 99 ~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+.|+.|+||++...+.+.-...+ + -|++++|.|||+..+.|+.+|..++|++....
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~Dl~-~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWNDLR-D-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred ccccceEEeecCcCeeEeehhhh-h-hheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 99999999999877665544444 5 79999999999999999999999999988765
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-25 Score=151.63 Aligned_cols=159 Identities=13% Similarity=0.158 Sum_probs=139.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++.+|+.+++++|+.|..-++|++.++.....+.+|...|+++.|+.+|.+|++|+.+|.|++|+..++ .....+.. .
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg-~~~~~~~~-e 147 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG-GEQWKLDQ-E 147 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC-ceEEEeec-c
Confidence 357899999999999999999999999999999999999999999999999999999999999999874 44444433 2
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
...+.=+ |+|.+..|++|+.||.+.+|.+.++...+.+.+|.. ++++=.|.|+|+.++++..||+|++|++.+..+..
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 3334444 799999999999999999999999888889999965 89999999999999999999999999999987766
Q ss_pred CCC
Q 029743 160 GNN 162 (188)
Q Consensus 160 ~~~ 162 (188)
...
T Consensus 227 ~~~ 229 (399)
T KOG0296|consen 227 KIT 229 (399)
T ss_pred Eec
Confidence 554
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-26 Score=156.26 Aligned_cols=149 Identities=19% Similarity=0.283 Sum_probs=118.4
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC----------------------------------
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---------------------------------- 48 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------------------------- 48 (188)
..-+.+.+++|+.|.+|+|||+++++++.++..|...|..+.|+..
T Consensus 243 Lqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 243 LQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred eeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 3446678899999999999999999887777667666666665432
Q ss_pred -------CCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccC
Q 029743 49 -------GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 49 -------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 121 (188)
.+++++++.|.+|++|++.+ .+.++++.+ |...+.|+ -..|+++++|+.|.+|++||+..|.+++.+++|
T Consensus 323 VNvVdfd~kyIVsASgDRTikvW~~st-~efvRtl~g-HkRGIACl-QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGH 399 (499)
T KOG0281|consen 323 VNVVDFDDKYIVSASGDRTIKVWSTST-CEFVRTLNG-HKRGIACL-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH 399 (499)
T ss_pred eeeeccccceEEEecCCceEEEEeccc-eeeehhhhc-ccccceeh-hccCeEEEecCCCceEEEEeccccHHHHHHhch
Confidence 34666666677777777655 577777888 87777776 335789999999999999999999999999999
Q ss_pred CCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 122 SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 122 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.+ -|.++.| |.+.+++|+.||+|++||+.....
T Consensus 400 Ee-LvRciRF--d~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 400 EE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred HH-hhhheee--cCceeeeccccceEEEEecccccC
Confidence 76 7999999 567899999999999999987653
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=165.52 Aligned_cols=153 Identities=17% Similarity=0.226 Sum_probs=137.5
Q ss_pred cCeEEEEeCCCcEEEEEcCCCce-----ee----eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTV-----QT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~-----~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
..+|++++.|.++++|++...+. .. +...|...|++++.+|+.+.++||+.|.+.++|++++ ...+.++.
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLs 502 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLS 502 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEee
Confidence 35789999999999999976211 11 2237999999999999999999999999999999985 68889999
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+ |+..+.++ |+|..+.+++++.|++|+||.+.+..|+.++.+|.. .|..+.|-.++++|++++.||.|++|++++..
T Consensus 503 G-H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~-aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 503 G-HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS-AVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred C-CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc-eeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 9 99999999 999999999999999999999999999999999976 89999999999999999999999999999998
Q ss_pred CCCCCC
Q 029743 157 KGSGNN 162 (188)
Q Consensus 157 ~~~~~~ 162 (188)
+...+.
T Consensus 581 C~~tlD 586 (775)
T KOG0319|consen 581 CEMTLD 586 (775)
T ss_pred hhhhhh
Confidence 776543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=145.11 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=131.1
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCC-CceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
++|+++ .+.+++++.||.+++||... ..++..++.|...|.++.|++ .++.+++++.|++|++|+... +..++++.
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r-~~Sv~Tf~ 144 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR-PNSVQTFN 144 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC-CcceEeec
Confidence 468874 56688889999999999754 467888999999999999998 567788899999999999875 68888999
Q ss_pred eccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCC
Q 029743 78 GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 78 ~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 154 (188)
+ |...|... |+| .++++++++.|+.+++||++.......+..|.. .+.++.|+. +...|++++.|+.|++||+++
T Consensus 145 g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~-Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 145 G-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS-EILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred C-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc-eeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 9 99999998 888 678999999999999999986544445888864 799999987 667889999999999999998
Q ss_pred cc
Q 029743 155 IL 156 (188)
Q Consensus 155 ~~ 156 (188)
..
T Consensus 223 ~r 224 (311)
T KOG0277|consen 223 LR 224 (311)
T ss_pred cc
Confidence 65
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-25 Score=161.45 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=144.0
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 82 (188)
|-+..+++++|+.|..|+||+..+++.+..+.+|...|.+++.+|...++++++.|-.|++||.+..-.+.+++.+ |..
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H~H 141 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-HEH 141 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-cce
Confidence 4456789999999999999999999999999999999999999999999999999999999999877788999999 999
Q ss_pred ceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC--CCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 83 SVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 83 ~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.|.++ |+| |.+.+++++.|++|++|.+.+..+..++.+|.. .|+++.+-+ |.++|++|+.|.+|+|||.++..+.
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence 99999 888 678999999999999999999999999999976 799999987 4579999999999999999988754
Q ss_pred CCC
Q 029743 159 SGN 161 (188)
Q Consensus 159 ~~~ 161 (188)
..+
T Consensus 221 ~TL 223 (794)
T KOG0276|consen 221 QTL 223 (794)
T ss_pred HHh
Confidence 443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=164.63 Aligned_cols=151 Identities=21% Similarity=0.263 Sum_probs=143.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.+||||++|+.+-.|++++||-+.+-+....+.+|.-||.|+..+||++.++||+.|.+|++|-++- +.|-+.+.. |
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF-GDCHKS~fA-H 591 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF-GDCHKSFFA-H 591 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc-chhhhhhhc-c
Confidence 46899999999999999999999999888888899999999999999999999999999999999975 799999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
...|.++ |-|....+++++.|+.|+.||-...+.++.+.+|.. .|++++.+|+|.++++++.|..|++|.-..
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-EVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh-eeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999 999999999999999999999999999999999976 899999999999999999999999998765
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=146.71 Aligned_cols=154 Identities=22% Similarity=0.301 Sum_probs=137.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+.|.+|++.+++++.|.+++.||+++|+.++.+++|..-|.++.-+.-| .++.+++.|+++++||++. +..++++.
T Consensus 96 l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~~-- 172 (338)
T KOG0265|consen 96 LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTFE-- 172 (338)
T ss_pred eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhccc--
Confidence 4688999999999999999999999999999999999999999844444 5677899999999999996 67777775
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.+..++++ |..++..+.+|+-|+.|++||++.+..+..+.+|.+ +|+.+..+++|.++.+-+.|.++++||++...+.
T Consensus 173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 45678888 888999999999999999999999999999999988 9999999999999999999999999999976543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=146.70 Aligned_cols=155 Identities=23% Similarity=0.365 Sum_probs=137.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.++.+++|++..++....+..|...+..+.|+|+++.+++++.++.+++|++.. +.....+.. +
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~~~-~ 92 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET-GECVRTLTG-H 92 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc-ccceEEEec-c
Confidence 47899999999999999999999998887788888999999999999999999999999999999975 466677777 8
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
...+.++ ++++++++++++.++.|.+||+++++....+..|.. .+.+++|+|++.++++++.++.|++||+++....
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 170 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc
Confidence 8889999 889888898888899999999998888888887765 7999999999888888888999999999865543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=141.73 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=127.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.|+-+|+|.++++.|.+|++|++..+.++++..+|...|..++.+.|...|++++.|..+.+||+.+ ++..+.+.+ |
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T-Gkv~Rr~rg-H 100 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT-GKVDRRFRG-H 100 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc-Ceeeeeccc-c
Confidence 35888999999999999999999999999999999999999999999999999999999999999987 688999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEeccc--CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
...|..+ |+.+...+++|+-|..+++||.++ .++++.+....+ .|.++..+ +..+++|+.||+++.||++.+..
T Consensus 101 ~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 101 LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-ceeEEEec--ccEEEeeccCCcEEEEEeeccee
Confidence 9999999 899999999999999999999986 446666654444 45555553 44556666666666666665543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=158.35 Aligned_cols=143 Identities=8% Similarity=0.051 Sum_probs=120.6
Q ss_pred EeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC-CCEEEEecCCCeEEEEEeCCccc-------ccceeeeccCCce
Q 029743 13 TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD-------CSDRFVGLSPNSV 84 (188)
Q Consensus 13 ~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~v 84 (188)
|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+..... ++..+.+ |...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence 345678899988777777888899999999999996 78999999999999999975322 2345678 88999
Q ss_pred eEE-eecCCCE-EEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 85 DAL-LKLDEDR-VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 85 ~~~-~~~~~~~-l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.++ |+|++.. +++++.|+.|++||+++++....+..+ . .|.+++|+|+|.+|++++.|+.|+|||+++....
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~-~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-K-KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-C-cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 999 8998875 568899999999999998877777533 4 7999999999999999999999999999987543
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-25 Score=155.06 Aligned_cols=153 Identities=15% Similarity=0.299 Sum_probs=124.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---------- 69 (188)
+.||||.++|++++.+..+.+||+.+|......+ ++...+.+++|.|||..+++|+.|+++..||++..
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~ 354 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD 354 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc
Confidence 4799999999999999999999999998877665 45678999999999999999999999999988532
Q ss_pred ------------------------------------------------------------------------ccccceee
Q 029743 70 ------------------------------------------------------------------------KDCSDRFV 77 (188)
Q Consensus 70 ------------------------------------------------------------------------~~~~~~~~ 77 (188)
...++.+.
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 00111112
Q ss_pred eccCCc---eeEEe-ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeC
Q 029743 78 GLSPNS---VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (188)
Q Consensus 78 ~~~~~~---v~~~~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~ 152 (188)
+ |+.. |+++| -.+..++++|+.|+.|+||+..+++++..+.+|.. .|++++|+|.. .++|+++.||+|+||..
T Consensus 435 G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 435 G-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred c-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 3 3322 33444 34567899999999999999999999999999987 89999999955 57899999999999988
Q ss_pred CCc
Q 029743 153 DDI 155 (188)
Q Consensus 153 ~~~ 155 (188)
...
T Consensus 513 ~~~ 515 (519)
T KOG0293|consen 513 SDN 515 (519)
T ss_pred Ccc
Confidence 754
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=150.43 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=143.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+++|+-.-||++++.|+.|+-||++..+.++...+|-+.|.+++.+|.-+.|++|+.|.++++||+++ +..+..+.+ |
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~~l~G-H 276 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVHVLSG-H 276 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-cceEEEecC-C
Confidence 47888889999999999999999999999999999999999999999999999999999999999997 688889999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
..+|..+ +.|....+++|+.|++|++||++.|+...++..|.. .|.+++.+|....+++++.| .|+.|++..+....
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~ 354 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQ 354 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhh
Confidence 9999999 788888999999999999999999999999998876 89999999999899988877 58999998876554
Q ss_pred C
Q 029743 160 G 160 (188)
Q Consensus 160 ~ 160 (188)
.
T Consensus 355 n 355 (460)
T KOG0285|consen 355 N 355 (460)
T ss_pred c
Confidence 4
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9e-25 Score=164.03 Aligned_cols=149 Identities=21% Similarity=0.346 Sum_probs=131.1
Q ss_pred ccCeEEEEeCCCcEEEEEcCC---CceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 6 DAMKLLGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
+.++||+++..|.|.+||+.. .+.+..+..|...++++.|++ ...+|++|+.||.|++||++. .....++.+ ..
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S~~t~~~-nS 176 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKSKSTFRS-NS 176 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccccccccc-cc
Confidence 467899999999999999986 455567889999999999998 457899999999999999986 466667777 88
Q ss_pred CceeEE-eec-CCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 82 NSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 82 ~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
..|+.+ |+| .+.+++++...|.+++||++. .++..++.+|.+ +|.++.|+|++.+||+|+.|++|+|||..+...
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 899999 887 678999999999999999985 557888999977 999999999999999999999999999986543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-24 Score=150.43 Aligned_cols=162 Identities=19% Similarity=0.265 Sum_probs=141.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-cc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~ 80 (188)
.|+|+...+++++.|..|+||..........+..|..+|+.+..+|.|.+|++++.|+.....|++.+ ..+..... ..
T Consensus 268 ~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g-~~lt~vs~~~s 346 (506)
T KOG0289|consen 268 KFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG-SQLTVVSDETS 346 (506)
T ss_pred EeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCC-cEEEEEeeccc
Confidence 57889999999999999999999887777788899999999999999999999999999999999874 44444332 01
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
.-.+++. |+|||..+.+|..|+.|++||+.++..+..|.+|.+ +|..++|+.+|-+|++++.|+.|++||+++.....
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence 2346677 899999999999999999999999999999999976 99999999999999999999999999999988776
Q ss_pred CCCCcc
Q 029743 160 GNNISQ 165 (188)
Q Consensus 160 ~~~~~~ 165 (188)
.+..++
T Consensus 426 t~~l~~ 431 (506)
T KOG0289|consen 426 TIQLDE 431 (506)
T ss_pred eeeccc
Confidence 665544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=142.76 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=130.3
Q ss_pred eec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 3 FAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 3 ~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|++ +.+.+++++.|++|++|+...++.++++.+|...|...+|+| .++.+++++.|+.+++||++..+..+. +.. |
T Consensus 112 wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a-h 189 (311)
T KOG0277|consen 112 WNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA-H 189 (311)
T ss_pred cccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe-c
Confidence 444 456678889999999999999999999999999999999999 678999999999999999998655554 666 8
Q ss_pred CCceeEE-ee-cCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeCCCcc
Q 029743 81 PNSVDAL-LK-LDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 81 ~~~v~~~-~~-~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (188)
...+.|+ |+ -+...+++|+.|+.|+.||+++ ..++..+.+| +..|+.+.|+|.. ..|++++.|-+++|||.....
T Consensus 190 ~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 190 NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred cceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 8888888 85 4788999999999999999997 4578889999 5589999999954 578999999999999998554
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=145.94 Aligned_cols=157 Identities=23% Similarity=0.307 Sum_probs=138.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.|+|+++++++++.++.|++|++..++.+..+..|...+.++.|+++++++++++.++.+.+|++.. ......+.. |
T Consensus 57 ~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~-~ 134 (289)
T cd00200 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTTLRG-H 134 (289)
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEEecc-C
Confidence 46889999999999999999999998878888888888999999999988999888899999999975 466666777 8
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
...+.++ ++|++.++++++.++.|++||+++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||++......
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence 8889999 899999999988899999999998888888888755 79999999999999999999999999998755443
Q ss_pred C
Q 029743 160 G 160 (188)
Q Consensus 160 ~ 160 (188)
.
T Consensus 214 ~ 214 (289)
T cd00200 214 T 214 (289)
T ss_pred c
Confidence 3
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=143.19 Aligned_cols=160 Identities=19% Similarity=0.222 Sum_probs=133.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeee--ecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCc--------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF-------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~-------- 69 (188)
++|+.+|..|++|+.|+++.+|++...+.... ..+|.+.|-.++|.| +...+++++.|.+|++||++..
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~ 105 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET 105 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec
Confidence 57899999999999999999999987655443 347888899999987 5678899999999999998753
Q ss_pred -------------------------------------------------------------------------cccccee
Q 029743 70 -------------------------------------------------------------------------KDCSDRF 76 (188)
Q Consensus 70 -------------------------------------------------------------------------~~~~~~~ 76 (188)
-++++.+
T Consensus 106 ~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si 185 (313)
T KOG1407|consen 106 KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI 185 (313)
T ss_pred cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccc
Confidence 1223334
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
+. |.....|+ |+|+|+++++|+.|..+.+||++.--|.+.+..+ +.+|..+.|+.+|++|+++++|..|-|=+++++
T Consensus 186 ~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl-dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 186 KA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL-DWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc-cCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 45 77677777 8999999999999999999999988899999888 569999999999999999999999999888887
Q ss_pred cCCCCCC
Q 029743 156 LKGSGNN 162 (188)
Q Consensus 156 ~~~~~~~ 162 (188)
.....++
T Consensus 264 d~~~eI~ 270 (313)
T KOG1407|consen 264 DRVWEIP 270 (313)
T ss_pred CeEEEee
Confidence 7554443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=149.83 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=137.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec---ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+.|||||.++++++.|+++.+||-.+++.+..+. +|.+.|.++.|+||+..+++++.|.++++||+.+ ..+++++.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~ 274 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWP 274 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEee
Confidence 4799999999999999999999999999998887 8999999999999999999999999999999986 46666654
Q ss_pred ecc----CCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 78 GLS----PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 78 ~~~----~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
- . ...+.|+|. ...|++.+.+|.|.+++.....++..+.+|.. .|+++..++++++|++++.||.|.-|++.
T Consensus 275 ~-~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 275 M-GSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred c-CCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 2 2 234556665 66899999999999999999999999999977 89999999999999999999999999999
Q ss_pred CccCCCC
Q 029743 154 DILKGSG 160 (188)
Q Consensus 154 ~~~~~~~ 160 (188)
++...+.
T Consensus 351 ~g~~~~~ 357 (603)
T KOG0318|consen 351 SGTSDRL 357 (603)
T ss_pred Ccccccc
Confidence 8876544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-23 Score=164.21 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=128.4
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+|+| ++++|++++.|++|++||+.+++.+..+.+|...|++++|+| ++.+|++++.|+.|++||++. +..+..+..
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~- 616 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT- 616 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec-
Confidence 5665 478899999999999999999998889999999999999997 789999999999999999986 466666654
Q ss_pred cCCceeEE-e-ecCCCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 80 SPNSVDAL-L-KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 80 ~~~~v~~~-~-~~~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
+ ..+.++ | +++|.++++|+.|+.|++||+++.. ++..+.+|.. .|.++.|. ++.+|++++.|+.|++||+...
T Consensus 617 ~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 617 K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence 4 567777 6 4679999999999999999998765 5667778866 89999997 6789999999999999999753
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=151.26 Aligned_cols=158 Identities=15% Similarity=0.236 Sum_probs=123.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCc--eeeeecccccceEEEEEEeCCCEEEEecCC----CeEEEEEeCCc------
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYF------ 69 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~------ 69 (188)
.|||.|-|+|+|...|+|+|||....+ +..+++...++|..+.|+++++.|++.++. |.+.+||-.+.
T Consensus 66 kySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G 145 (603)
T KOG0318|consen 66 KYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG 145 (603)
T ss_pred EeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence 589999999999999999999986532 223455566778888888887766654432 23445543211
Q ss_pred ----------------------------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee
Q 029743 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (188)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~ 114 (188)
-+....+.. |...|.|+ |+|||.++++.+.||++.+||-.+++.
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~-HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFRE-HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccc-cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence 111122334 77889999 999999999999999999999999999
Q ss_pred eeecc---cCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 115 IQPIA---EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 115 ~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
+..+. +|.+ .|++++|+||++.+++++.|.+++|||+.+.......
T Consensus 225 vg~l~~~~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 225 VGELEDSDAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred EEEecCCCCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 99887 8876 8999999999999999999999999999987654433
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=160.44 Aligned_cols=160 Identities=14% Similarity=0.217 Sum_probs=140.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|..-++++|+.|-+|+||+..+.+++.++.+|-..|..+.|++.-.+|++++.|.+|+||+..+ +.++..+++ |
T Consensus 57 v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r~~iavltG-H 134 (1202)
T KOG0292|consen 57 VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-RKCIAVLTG-H 134 (1202)
T ss_pred eeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-CceEEEEec-C
Confidence 57999999999999999999999999999999999999999999999999999999999999999976 799999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCe----------------------------------------------
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---------------------------------------------- 113 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~---------------------------------------------- 113 (188)
...|.|. |+|....+++++.|.+|++||+..-+
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 9999999 99999999999999999999983100
Q ss_pred ---------------------------eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCCC
Q 029743 114 ---------------------------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNI 163 (188)
Q Consensus 114 ---------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 163 (188)
.+-+..+|.+ .|+++.|+|....+++.+.|+.|+|||+.+.+.....+.
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred cCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeec
Confidence 0112235655 799999999999999999999999999998876665543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=147.74 Aligned_cols=158 Identities=17% Similarity=0.240 Sum_probs=130.2
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCC-------ceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCC-cc
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGY-FK 70 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~-~~ 70 (188)
|+|++. .-.|++++.|++|.+||+... .+...+.+|...|..++|++ +...|++++.|+.+.|||++. ..
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 457773 446889999999999999743 23445678999999999999 557888999999999999995 23
Q ss_pred cccceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCc
Q 029743 71 DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSM 146 (188)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~ 146 (188)
.+...... |...+.|+ |+| ++..||+|+.|++|.+||+|+ ..++.++.+|.+ .|..+.|+|.. ..|++++.|+.
T Consensus 263 ~~~~~~~a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 263 KPSHSVKA-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCcccccc-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCc
Confidence 45555667 99999999 887 677899999999999999997 457888999977 89999999954 57789999999
Q ss_pred EEEEeCCCccCCCC
Q 029743 147 LKLWDLDDILKGSG 160 (188)
Q Consensus 147 i~iwd~~~~~~~~~ 160 (188)
+.|||+..-...+.
T Consensus 341 l~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQS 354 (422)
T ss_pred EEEEeccccccccC
Confidence 99999987655543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-24 Score=160.32 Aligned_cols=154 Identities=18% Similarity=0.319 Sum_probs=131.8
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.|++ ..++|++|+.||.|++||++...-..++.+....|..++|+| .+..|+++...|.+++||++...++...+..
T Consensus 140 dfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A- 218 (839)
T KOG0269|consen 140 DFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA- 218 (839)
T ss_pred eeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-
Confidence 4665 567899999999999999998887778888888999999999 6789999999999999999998889999999
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE-EEEEe--CCCcEEEEeCCCc
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSIS--HDSMLKLWDLDDI 155 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~d~~i~iwd~~~~ 155 (188)
|.+++.|+ |+|++.+||+|+.|+.|+||+..+.+......-+..++|..+.|.|..++ |++++ .|-.|+|||++..
T Consensus 219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 99999999 99999999999999999999998655443333344568999999998765 55554 6889999999876
Q ss_pred c
Q 029743 156 L 156 (188)
Q Consensus 156 ~ 156 (188)
-
T Consensus 299 Y 299 (839)
T KOG0269|consen 299 Y 299 (839)
T ss_pred c
Confidence 4
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=143.19 Aligned_cols=150 Identities=16% Similarity=0.245 Sum_probs=131.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------- 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------- 70 (188)
|.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++|+..+..
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~ 233 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG 233 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence 5799999999999999999999999977778999999999999999999999999999999999986530
Q ss_pred --------------------------------------------------------------------------------
Q 029743 71 -------------------------------------------------------------------------------- 70 (188)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (188)
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence
Q ss_pred ----cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC
Q 029743 71 ----DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (188)
Q Consensus 71 ----~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 145 (188)
..++..-. |...|..+ |-+ ..+|++++.+|.|++||.++|+++.++.+|.. .|.+++++|+.+++++++.|+
T Consensus 314 D~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 314 DLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred ecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCCC
Confidence 01111112 56667777 666 67899999999999999999999999999976 899999999999999999999
Q ss_pred cEEEEeCC
Q 029743 146 MLKLWDLD 153 (188)
Q Consensus 146 ~i~iwd~~ 153 (188)
+.+||+..
T Consensus 391 ~a~VF~v~ 398 (399)
T KOG0296|consen 391 TALVFEVP 398 (399)
T ss_pred eEEEEecC
Confidence 99999875
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=143.26 Aligned_cols=154 Identities=16% Similarity=0.257 Sum_probs=129.5
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCC------------C------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEE
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRK------------N------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 63 (188)
+|||||.++++|+.|..|+|+|++. + -.++++..|...|+++.|+|....|++++.|++|++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 6999999999999999999999861 1 235667789999999999999999999999999999
Q ss_pred EEeCCc--ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec---ccCCCcceeEEEeeCCCCE
Q 029743 64 YSWGYF--KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 64 ~d~~~~--~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ 137 (188)
||+... ++..+.++ ...+++++ |+|.|.+|++|.....+++||+.+.++...- .+|.+ .|+++.+++.++.
T Consensus 199 FDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~-ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG-AITQVRYSSTGSL 275 (430)
T ss_pred EecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc-ceeEEEecCCccE
Confidence 999642 12333344 46789999 9999999999999999999999998876443 45655 7999999999999
Q ss_pred EEEEeCCCcEEEEeCCCccCC
Q 029743 138 LGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.++++.||.|++||--+..+.
T Consensus 276 YvTaSkDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCV 296 (430)
T ss_pred EEEeccCCcEEeeccccHHHH
Confidence 999999999999996655443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=154.18 Aligned_cols=156 Identities=15% Similarity=0.251 Sum_probs=139.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecc-cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+.|+++|++|++|..+|.|.|||....+.+..+.+ |...|-+++|. +..+.+|+.++.|..+|++........+.+
T Consensus 223 v~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~- 299 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQG- 299 (484)
T ss_pred EEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhc-
Confidence 46899999999999999999999998888888887 99999999997 778999999999999999986666666888
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEEe--CCCcEEEEeCCCc
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSIS--HDSMLKLWDLDDI 155 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~d~~i~iwd~~~~ 155 (188)
|...|..+ |++++.++++|+.|+.+.|||.....+...+..|.. .|..++|+| ....||+|+ .|+.|++||..++
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce-eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 99999999 999999999999999999999988888999999966 899999999 456778776 7999999999987
Q ss_pred cCCCC
Q 029743 156 LKGSG 160 (188)
Q Consensus 156 ~~~~~ 160 (188)
.....
T Consensus 379 ~~i~~ 383 (484)
T KOG0305|consen 379 ARIDS 383 (484)
T ss_pred cEecc
Confidence 65443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=161.40 Aligned_cols=151 Identities=15% Similarity=0.224 Sum_probs=130.3
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..+.++.|++ ++.+|++|+.|+.|++||++.....+..+.+
T Consensus 581 l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~ 659 (793)
T PLN00181 581 IDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659 (793)
T ss_pred EEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC
Confidence 46886 7899999999999999999998888777744 6799999964 7899999999999999999864445667778
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEeccc------CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
|...+.++ |. ++.++++++.|+.|++||++. ..++..+.+|.. .+..++|+|++.+|++++.|+.|++|+
T Consensus 660 -h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 660 -HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred -CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 99999999 65 788999999999999999974 356778888865 789999999999999999999999999
Q ss_pred CCCc
Q 029743 152 LDDI 155 (188)
Q Consensus 152 ~~~~ 155 (188)
....
T Consensus 737 ~~~~ 740 (793)
T PLN00181 737 KAFP 740 (793)
T ss_pred CCCC
Confidence 7654
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-25 Score=163.73 Aligned_cols=154 Identities=22% Similarity=0.344 Sum_probs=143.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.|++...+|++|+.+|+|++||++..+.++.+.+|...+..+.|+|.+.+++.++.|..+++||.+. ..+...+.+ |
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s-~ 153 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKS-H 153 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecC-C
Confidence 46888889999999999999999999999999999999999999999999999999999999999985 588888999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
...+.++ |+|+|++++.++.|..++|||+..|+.+..|..|.+ .+..+.|+|..-.+++|+.|++|++||+++...
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 9999999 899999999999999999999999999999999976 899999999998899999999999999996543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.2e-23 Score=146.24 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=126.1
Q ss_pred eeecccC-eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC-CCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.|+|+++ .+++|+.|+.+++||+.+......+.+|.+.|.+.+|+|. +..+++|+.||.|++||.+.....+..+.
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-- 194 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-- 194 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--
Confidence 4788554 5677788889999999998876688899999999999994 56889999999999999987545555554
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|..+|..+ +-|.|..+++++.. .|++||+-+|. .+..+..|.. .|+|+++..++..|++++-|+.|++||+.+.+.
T Consensus 195 hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccc-eEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 88999999 78999999988765 69999998655 4444444766 899999999999999999999999999777653
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=160.90 Aligned_cols=158 Identities=15% Similarity=0.222 Sum_probs=136.9
Q ss_pred CeeecccCeEEEEe--CCCcEEEEEcCC------------CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEe
Q 029743 1 MTFAADAMKLLGTS--GDGTLSVCNLRK------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (188)
Q Consensus 1 l~~s~~~~~l~~~~--~d~~i~i~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 66 (188)
++.+|+|..+++|+ .|+.++||+... .+.+.....|.+.|.|+.|+|||++||+|+.|+.|.+|..
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 36789999999999 899999998652 1234455679999999999999999999999999999998
Q ss_pred CC------cc-----------cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeE
Q 029743 67 GY------FK-----------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES 128 (188)
Q Consensus 67 ~~------~~-----------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~ 128 (188)
.. .+ .....+.+ |...|..+ |+|++.++++++.|++|.+|+.++.+.+..+.+|.. .|..
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-~VKG 176 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS-LVKG 176 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc-cccc
Confidence 62 11 24556788 99999999 899999999999999999999999999999999977 8999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 129 LALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 129 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+.|.|-|++|++-+.|++|+||++.+......
T Consensus 177 vs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~ 208 (942)
T KOG0973|consen 177 VSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS 208 (942)
T ss_pred eEECCccCeeeeecCCceEEEEEcccceeeEe
Confidence 99999999999999999999999877544433
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=146.22 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=132.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC---ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+.||++|++||+++.|.+..+|.+... +..+++.+|..+|..+.|+||.++|++|+.+..+.+||+.+ +.+...+.
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t-gd~~~~y~ 308 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT-GDLRHLYP 308 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc-chhhhhcc
Confidence 469999999999999999999988653 34677889999999999999999999999999999999987 56666554
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
..+...+.++ |.|||..+++|+.|+.+..||+. |+.+....+-..-.|.+++..+||+++++...|..|++|+.++..
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 3134555555 89999999999999999999986 555555555433369999999999999999999999999999877
Q ss_pred CCCCC
Q 029743 157 KGSGN 161 (188)
Q Consensus 157 ~~~~~ 161 (188)
.+...
T Consensus 388 dr~li 392 (519)
T KOG0293|consen 388 DRGLI 392 (519)
T ss_pred hhccc
Confidence 66443
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=153.55 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=135.4
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
..-+.+|++|+.|.++++||+.+|.+...+.+|.+.+.++... ...+++|+.|.+|++|++.+ +..+..+.+ |..+
T Consensus 258 ~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n-~~~l~l~~~-h~~~ 333 (537)
T KOG0274|consen 258 PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTN-GACLNLLRG-HTGP 333 (537)
T ss_pred ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccC-cceEEEecc-cccc
Confidence 3347889999999999999999999999999999999998874 55788899999999999986 689999999 9999
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc-cCCCCC
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI-LKGSGN 161 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~ 161 (188)
|.++ .+ +.++++|+.|++|++||+.+++++..+.+|.. .|+++.+.+. ..+++|+.|+.|++||+++. .....+
T Consensus 334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 334 VNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred EEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 9999 55 88999999999999999999999999999977 8999988654 88999999999999999999 555444
Q ss_pred CC
Q 029743 162 NI 163 (188)
Q Consensus 162 ~~ 163 (188)
.+
T Consensus 410 ~~ 411 (537)
T KOG0274|consen 410 QG 411 (537)
T ss_pred cC
Confidence 43
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=147.90 Aligned_cols=151 Identities=17% Similarity=0.259 Sum_probs=128.3
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
.|-.||++|++|+..|.|+|||..+...++.+.+|+.++..+.|+|++ ..|++|+.|+.+++||+.+. .....+.+ |
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-~v~~~l~~-h 152 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-YVQAELSG-H 152 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-EEEEEecC-C
Confidence 577899999999999999999977766778889999999999999955 67788999999999999864 44446788 9
Q ss_pred CCceeEE-eec-CCCEEEEecCCCeEEEEecccC-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+..|+|. ++| ++..+++|+.||.|++||++.. ..+..+. | +.+|..+.+-|.|..+++++ .+.|++||+-++..
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-h-g~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-H-GCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQ 229 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-C-CCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCce
Confidence 9999999 777 5568999999999999999976 6666665 4 34999999999999998886 56899999986543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=133.45 Aligned_cols=151 Identities=18% Similarity=0.256 Sum_probs=126.6
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 82 (188)
|....+.+++.+.|++|++||.+++..++.+. ...+|+++..+++|++|.++. .+.|..||.... ..++.+. -..
T Consensus 151 wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf-~~lKs~k--~P~ 225 (334)
T KOG0278|consen 151 WCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF-GLLKSYK--MPC 225 (334)
T ss_pred EeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccc-cceeecc--Ccc
Confidence 55566788888999999999999999998887 567899999999999876654 458999998763 4454444 334
Q ss_pred ceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
.|.+. .+|+...+++|+.|..++.||..+++.+..+ .+|.+ +|.++.|+|+|...++|+.||+|++|.+...+...
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence 55666 6899999999999999999999999988886 78866 99999999999999999999999999988766543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-23 Score=144.65 Aligned_cols=153 Identities=12% Similarity=0.175 Sum_probs=123.8
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCCce---eeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccce
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
|+|||- ...|++|.--+.|++|...++.- ...+.+|...|..++|+|.. ..|++|+.|++|+|||++........
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 578882 33477777778999999887632 23455799999999999955 68899999999999999975333333
Q ss_pred e-eeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc---CeeeeecccCCCcceeEEEeeCC-CCEEEEEeCCCcEEE
Q 029743 76 F-VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQPIAEHSEYPIESLALSHD-RKFLGSISHDSMLKL 149 (188)
Q Consensus 76 ~-~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i 149 (188)
+ +. |...|..+ |+....+|++|+.||+++|||++. ++++.++..|.. +|+++.|+|. ...|++++.|.+|.+
T Consensus 297 ~~kA-h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 297 STKA-HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred Eeec-cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEE
Confidence 3 45 88899999 888777999999999999999985 568889999976 9999999995 456788889999999
Q ss_pred EeCCCc
Q 029743 150 WDLDDI 155 (188)
Q Consensus 150 wd~~~~ 155 (188)
||+.-.
T Consensus 375 WDlsvE 380 (440)
T KOG0302|consen 375 WDLSVE 380 (440)
T ss_pred EEeecc
Confidence 999753
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=143.80 Aligned_cols=153 Identities=14% Similarity=0.250 Sum_probs=128.8
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcC--CCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
++|+| +..++++++.|+.+.|||.+ +.++.....+|.+.|.|++|+| ++..||+|+.|++|.+||+++-..++..+
T Consensus 233 V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 233 VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence 35666 45678889999999999999 4566667789999999999999 66788999999999999999877889999
Q ss_pred eeccCCceeEE-eecC-CCEEEEecCCCeEEEEecccC--------------eeeeecccCCCcceeEEEeeCCCCEE-E
Q 029743 77 VGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPN--------------RIIQPIAEHSEYPIESLALSHDRKFL-G 139 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l-~ 139 (188)
.+ |...|.++ |+|. ...|++++.|+.+.+||+..- +++..-.+|.. .|..+.|+|+..++ +
T Consensus 313 e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 313 EG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIA 390 (422)
T ss_pred cC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEE
Confidence 99 99999999 9994 568889999999999998531 13455567765 89999999988764 6
Q ss_pred EEeCCCcEEEEeCCCc
Q 029743 140 SISHDSMLKLWDLDDI 155 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (188)
+.+.|+.+.||.....
T Consensus 391 SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 391 SVAEDNILQIWQMAEN 406 (422)
T ss_pred EecCCceEEEeecccc
Confidence 8889999999998754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=146.01 Aligned_cols=149 Identities=15% Similarity=0.221 Sum_probs=121.5
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC---
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN--- 82 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--- 82 (188)
|...+++|..|++|+|||..+..+...+.+|.+.|.|+.| +.+.+++|+.|.+|++||+++ ++++.++.. |..
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~t-ge~l~tlih-HceaVL 281 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNT-GEPLNTLIH-HCEAVL 281 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccC-CchhhHHhh-hcceeE
Confidence 5667899999999999999999999999999999999999 567999999999999999987 566655443 333
Q ss_pred ----------------------------------------ceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCC
Q 029743 83 ----------------------------------------SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (188)
Q Consensus 83 ----------------------------------------~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~ 122 (188)
.|..+ .-+.+++++++.|.+|++|++.+++.++++.+|.
T Consensus 282 hlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV-dfd~kyIVsASgDRTikvW~~st~efvRtl~gHk 360 (499)
T KOG0281|consen 282 HLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV-DFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHK 360 (499)
T ss_pred EEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee-ccccceEEEecCCceEEEEeccceeeehhhhccc
Confidence 33333 1234688888999999999999999999999996
Q ss_pred CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCC
Q 029743 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 123 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (188)
. .|-|+.+ .++++++|+.|.+|++||++.+.....++
T Consensus 361 R-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 361 R-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred c-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh
Confidence 5 5777666 68899999999999999999887655443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=142.16 Aligned_cols=156 Identities=20% Similarity=0.313 Sum_probs=132.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce---
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--- 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--- 75 (188)
+.|+|....|++|+.|++|++||+......+.++ ....+|.++.|+|.|.+|++|..-..+++||+.+. ++...
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-QcfvsanP 256 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-QCFVSANP 256 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce-eEeeecCc
Confidence 5799999999999999999999997643322222 24568999999999999999999999999999863 33222
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
-.. |.+.|+++ +++.|++.++++.||.|++||--+++|+.++ .+|.+..|.+..|..+++++++.+.|..+++|.+.
T Consensus 257 d~q-ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 257 DDQ-HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ccc-cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 134 78899999 8999999999999999999998889999887 45666689999999999999999999999999999
Q ss_pred CccCC
Q 029743 154 DILKG 158 (188)
Q Consensus 154 ~~~~~ 158 (188)
++...
T Consensus 336 t~R~l 340 (430)
T KOG0640|consen 336 TGRML 340 (430)
T ss_pred CCceE
Confidence 87643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=144.39 Aligned_cols=159 Identities=21% Similarity=0.227 Sum_probs=132.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC--------ccccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--------FKDCS 73 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--------~~~~~ 73 (188)
+-+|+|.+|+.|+..+.|++|.+.+|.++..+.+|-..|+++.|+-||.+|++|+.||.|.+|.+-. ...++
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 4578999999998999999999999999999999999999999999999999999999999998731 23556
Q ss_pred ceeeeccCCceeEE-ee--cCCCEEEEecCCCeEEEEecccCee------------------------------------
Q 029743 74 DRFVGLSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRI------------------------------------ 114 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~--~~~~~l~~~~~d~~v~~~d~~~~~~------------------------------------ 114 (188)
..+.. |+-+|+.+ .. +...++++++.|.++++||+..+..
T Consensus 168 ~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 168 HIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred eeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeeh
Confidence 67788 99999999 43 3557899999999999999855432
Q ss_pred ---------------------eeecccCCC-cceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 115 ---------------------IQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 115 ---------------------~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
+..+.+|.+ .+|+|++++-||..|++|+.||.|.|||+.+.+.....
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 122334533 37999999999999999999999999999887654433
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=133.92 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=133.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce-----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----- 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----- 75 (188)
+.|+.+|.+|++++.|.+..||-..+|+.+.+..+|.+.|+++...-+.+.+++|+.|.++++||+.++ .++..
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG-k~la~~k~~~ 94 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG-KQLATWKTNS 94 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC-cEEEEeecCC
Confidence 357889999999999999999998899999999999999999999999999999999999999999864 22111
Q ss_pred ------------------------------------------------eeeccCCceeEE-eecCCCEEEEecCCCeEEE
Q 029743 76 ------------------------------------------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (188)
Q Consensus 76 ------------------------------------------------~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~ 106 (188)
+.. +...++.+ |.|-+++|++|..+|.|.+
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l~~~ii~Ghe~G~is~ 173 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPLGETIIAGHEDGSISI 173 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-CccceeeeeecccCCEEEEecCCCcEEE
Confidence 112 33445555 8999999999999999999
Q ss_pred EecccCee-eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 107 VGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 107 ~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
||++++.. +.....|.. .|+.|.++++..++++++.|.+-++||..+.......
T Consensus 174 ~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 174 YDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred EEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 99999854 444566755 8999999999999999999999999999988765443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=132.59 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=134.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC-cccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~ 80 (188)
+.+.|...+++++.|..+.+||+.+|+..+.+.+|.+.|+.+.|+.....+++|+.|.++++||.+. ..++++.+.. .
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a 144 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-A 144 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-h
Confidence 3456778899999999999999999999999999999999999999999999999999999999975 2367777776 6
Q ss_pred CCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
...|.++ .-.+..+++|+.||+++.||++.|....-+-+| +|++++|+++++.++.++.|+++++.|-.+++...
T Consensus 145 ~D~V~Si-~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 145 KDGVSSI-DVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred cCceeEE-EecccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 6667766 224567999999999999999999988777766 89999999999999999999999999998876443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=140.20 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=126.5
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCC-------------------------CceeeeecccccceEEEEEEeCCCEEEEec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRK-------------------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 56 (188)
+..++|..+++|+.|..|.||+... +.++..+.+|..+|.++.|++ ...+++++
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S 278 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS 278 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeec
Confidence 4568999999999999999999321 123446779999999999998 77899999
Q ss_pred CCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe---eeeecccCCCcceeEEEee
Q 029743 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALS 132 (188)
Q Consensus 57 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~v~~~~~~ 132 (188)
.|.+|+.||+..+ .....+.+ .....++ .+|..++|++|+.|..+++||.+++. ..+++.+|.. .|.++.|+
T Consensus 279 wDHTIk~WDletg-~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkws 354 (423)
T KOG0313|consen 279 WDHTIKVWDLETG-GLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWS 354 (423)
T ss_pred ccceEEEEEeecc-cceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh-hhhheecC
Confidence 9999999999874 55555554 4567888 79999999999999999999999754 5678899977 89999999
Q ss_pred CCC-CEEEEEeCCCcEEEEeCCCcc
Q 029743 133 HDR-KFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 133 ~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|.. .+|++++.|+++++||+++..
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCC
Confidence 955 567899999999999999876
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=147.57 Aligned_cols=161 Identities=17% Similarity=0.291 Sum_probs=145.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-CeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+|++..+.|++|-..|...+|.+..-.+++.+.-...+|..+.|+..|.+|+.|+.. |++.+|+... ...+...++ |
T Consensus 272 ~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-EsYVlKQQg-H 349 (893)
T KOG0291|consen 272 AFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-ESYVLKQQG-H 349 (893)
T ss_pred eccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec-cceeeeccc-c
Confidence 578888999999999999999999999998888777899999999999999988765 8999999976 466777788 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
-..+.++ ++|||+++++|+.||+|+|||.+++-|..++..|.. .|+.+.|+..++.|++.+.||+|+.||+.......
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC-ceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 9999999 899999999999999999999999999999999977 79999999999999999999999999999887666
Q ss_pred CCCCcc
Q 029743 160 GNNISQ 165 (188)
Q Consensus 160 ~~~~~~ 165 (188)
....++
T Consensus 429 Tft~P~ 434 (893)
T KOG0291|consen 429 TFTSPE 434 (893)
T ss_pred eecCCC
Confidence 554444
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=149.90 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=135.6
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCC--ceeeeecccccceEEEEE-EeCCCEEEEecCCCeEEEEEeCCccc-ccc----
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSGTVLLYSWGYFKD-CSD---- 74 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~---- 74 (188)
...+++.|++++.|.+|++|+...+ -+..++..|...|.|++. .++...+++|+-|+.|.+||+..... .+.
T Consensus 81 L~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~ 160 (735)
T KOG0308|consen 81 LCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN 160 (735)
T ss_pred hhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc
Confidence 3457889999999999999999876 567778899999999999 77889999999999999999985321 111
Q ss_pred ----eee-eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 75 ----RFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 75 ----~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
.+. + +...++++ .++.|..+++|+..+.+++||.++++.+..+.+|.+ .|..+..++||+.+++++.||+|+
T Consensus 161 ~t~~sl~sG-~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 161 VTVNSLGSG-PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred cccccCCCC-CccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEE
Confidence 122 6 77788998 588999999999999999999999999999999988 799999999999999999999999
Q ss_pred EEeCCCccCCCCC
Q 029743 149 LWDLDDILKGSGN 161 (188)
Q Consensus 149 iwd~~~~~~~~~~ 161 (188)
+||+.........
T Consensus 239 lWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 239 LWDLGQQRCLATY 251 (735)
T ss_pred eeeccccceeeeE
Confidence 9999988765543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=134.83 Aligned_cols=150 Identities=12% Similarity=0.166 Sum_probs=123.9
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCC-Ccee-eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
|+||| ...++++++.|++|++|+++. |... +....|.++|.+++|+.+|..+++|+.|+++++||+.. .....+.
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S--~Q~~~v~ 110 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS--GQVSQVA 110 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC--CCeeeee
Confidence 58999 555666889999999999986 3332 34457999999999999999999999999999999986 3555666
Q ss_pred eccCCceeEE-eec--CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 78 GLSPNSVDAL-LKL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 78 ~~~~~~v~~~-~~~--~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
- |..++.++ |-+ ....|++|+.|++|+.||++...++.++.-+ + .++++.. ...+++++..++.|.+|++++
T Consensus 111 ~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-e-RvYa~Dv--~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 111 A-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-E-RVYAADV--LYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred e-cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-c-eeeehhc--cCceeEEEecCCcEEEEEcCC
Confidence 6 99999999 633 4568999999999999999999999888776 4 6877765 456788888999999999977
Q ss_pred ccC
Q 029743 155 ILK 157 (188)
Q Consensus 155 ~~~ 157 (188)
...
T Consensus 186 ~~t 188 (347)
T KOG0647|consen 186 PPT 188 (347)
T ss_pred Ccc
Confidence 653
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-23 Score=146.34 Aligned_cols=149 Identities=15% Similarity=0.302 Sum_probs=126.3
Q ss_pred Ceeeccc-CeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc---------
Q 029743 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--------- 70 (188)
Q Consensus 1 l~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--------- 70 (188)
+.|.|++ +.+++|+.|+.|+.||+++++.++....|-+.|..+.|-++|+.+++++.|+++++|+.+.+-
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~ 384 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE 384 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh
Confidence 3578887 788999999999999999999999888999999999999999999999999999999986430
Q ss_pred ------------------------------------cccceeeeccCC--ceeEE-eecCCCEEEEecCCCeEEEEeccc
Q 029743 71 ------------------------------------DCSDRFVGLSPN--SVDAL-LKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 71 ------------------------------------~~~~~~~~~~~~--~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
...+.+.+ |.. ....+ |||||.+|++|..+|.+.+||-++
T Consensus 385 ~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 385 MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 00111233 432 23344 899999999999999999999999
Q ss_pred CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEe
Q 029743 112 NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWD 151 (188)
Q Consensus 112 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd 151 (188)
-+.+..+.+|.+ ++..+.|+|.. ..+|+++.||.|++|+
T Consensus 464 ~kl~~~lkah~~-~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 464 TKLVSKLKAHDQ-PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhccccCCc-ceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999966 89999999954 5789999999999996
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=142.81 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=136.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++.||||++|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....+++++.|+.+++|+++. ...+.++.+ |
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s~vetlyG-H 285 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LSYVETLYG-H 285 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hHHHHHHhC-C
Confidence 47899999999999999999999999999999999999999999999889999999999999999986 578888999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
...|..+ +...++.+.+|+.|+++++|++.. +....+.++.+ .+-|++|-. ...+++|+.+|.|.+|++.+..+..
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf 362 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLF 362 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCcee
Confidence 9999999 777788888888999999999943 33445677755 799999975 4678899999999999999887654
Q ss_pred CC
Q 029743 160 GN 161 (188)
Q Consensus 160 ~~ 161 (188)
..
T Consensus 363 ~~ 364 (479)
T KOG0299|consen 363 TS 364 (479)
T ss_pred Ee
Confidence 43
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-22 Score=145.28 Aligned_cols=151 Identities=14% Similarity=0.173 Sum_probs=131.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEe--cCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCG--SQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
|.|++|++++|+|+.|+.+.|||.....++..+..|...|.+++|+| ....||+| +.|+.|++||..+ +..+..+.
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd 385 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD 385 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc
Confidence 57999999999999999999999988888888899999999999999 56778875 4589999999986 56666555
Q ss_pred eccCCceeEE-eecCCCEEEEe--cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 78 GLSPNSVDAL-LKLDEDRVITG--SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~--~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
....|..+ |++..+-++++ ..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++++.|.++++|++-.
T Consensus 386 --tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 386 --TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred --cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 46788999 89988666554 3577899999999999999999977 899999999999999999999999999987
Q ss_pred c
Q 029743 155 I 155 (188)
Q Consensus 155 ~ 155 (188)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 5
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-22 Score=132.45 Aligned_cols=150 Identities=21% Similarity=0.312 Sum_probs=120.9
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceee---------------------------------------------------
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQT--------------------------------------------------- 31 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~--------------------------------------------------- 31 (188)
.+.+.+.+++|+.|.++++||+++|+.+.
T Consensus 60 id~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 60 IDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred ecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 34566778888888888888888776433
Q ss_pred --eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEe
Q 029743 32 --RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG 108 (188)
Q Consensus 32 --~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d 108 (188)
.++.+.+.++.+-|.|-++.|++|..+|.|.+||++++.+.+...+. |...|..+ ++|+..++++++.|.+-++||
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh-hccccccccccCCcceEEecccCccceeee
Confidence 23334556778889998999999999999999999986677777777 88999999 899999999999999999999
Q ss_pred cccCeee-------------------------------------------------------eecccCCCcceeEEEeeC
Q 029743 109 ILPNRII-------------------------------------------------------QPIAEHSEYPIESLALSH 133 (188)
Q Consensus 109 ~~~~~~~-------------------------------------------------------~~~~~~~~~~v~~~~~~~ 133 (188)
.++-+.+ ..+++|-+ +|++++|+|
T Consensus 219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhP 297 (327)
T KOG0643|consen 219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHP 297 (327)
T ss_pred ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECC
Confidence 8544322 22346765 999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 029743 134 DRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~~~ 154 (188)
+|+..++|+.||.|++.....
T Consensus 298 dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CCcccccCCCCceEEEEEecc
Confidence 999999999999999986553
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=133.61 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=128.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee--
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-- 78 (188)
+.||+.|.+||.|..+|.|.|||+.+-..-+.+.+|..+|.+++|+++|+.|++++.|..|.+||+..+ .+++.+.-
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g-s~l~rirf~s 107 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG-SPLKRIRFDS 107 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC-CceeEEEccC
Confidence 469999999999999999999999998888889999999999999999999999999999999999753 33333210
Q ss_pred --------------------------------cc-----------CCceeEE-eecCCCEEEEecCCCeEEEEecccCee
Q 029743 79 --------------------------------LS-----------PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (188)
Q Consensus 79 --------------------------------~~-----------~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~ 114 (188)
.| .....+. |.+.|+++++|...|.+.+++..+.++
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee
Confidence 00 0001112 567789999999999999999999998
Q ss_pred eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 115 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+..++...-..|..+.++..|++|+..+.|..|+.|+++....
T Consensus 188 vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 188 VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence 8877665523799999999999999999999999999985443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=137.45 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=130.7
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecc--cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
..+|.|.||++++.|++..+.|++++..+..... ..-.+++.+|+|||..|.+|..|+.+++||+.. +..+..|.+
T Consensus 310 s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpg- 387 (506)
T KOG0289|consen 310 SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPG- 387 (506)
T ss_pred eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCC-
Confidence 4678999999999999999999999988766553 234589999999999999999999999999986 568888999
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
|.++|..+ |+.+|.+|++++.|+.|++||+|.-+...++.-.....+.++.|.+.|.+|+.++.+=+|++++-.+
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 99999999 9999999999999999999999987776666555444699999999999999998887777777443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=140.16 Aligned_cols=155 Identities=15% Similarity=0.284 Sum_probs=140.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+.||.|...||+|+.||.|++|.+.+|.+++.+. .|...|+++.|+.|+..+.+++.|.++++--+.. +.+++.+.+
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LKEfrG- 346 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLKEFRG- 346 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHHHhcC-
Confidence 4689999999999999999999999999999987 8999999999999999999999999999999986 799999999
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC-CcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCcc
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSH-DRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|...+... |.++|.++++++.||+|++|+..+.+|+.++.... +.+|.++..-| +-..++++...++|+|-++....
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 99999998 99999999999999999999999999998886432 45788888877 44678889999999999988654
Q ss_pred C
Q 029743 157 K 157 (188)
Q Consensus 157 ~ 157 (188)
.
T Consensus 427 V 427 (508)
T KOG0275|consen 427 V 427 (508)
T ss_pred E
Confidence 3
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-22 Score=137.87 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=128.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc--cccceeeec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~ 79 (188)
.|++ ...+++++.|.+|++||+.++.....+.+ ...+.++..+|..++|++|+.|..+++||.+++. ...+.+.+
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g- 343 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG- 343 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec-
Confidence 4555 66889999999999999999988877764 5689999999999999999999999999998643 34566889
Q ss_pred cCCceeEE-eecC-CCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 80 SPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 80 ~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
|...|.++ ++|. ...|++++.|+++++||+|+.+ ++..+.+|.+ .|.++.|. ++..+++|+.|++|+|+.-..
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D-Kvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND-KVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc-eEEEEecc-CCceEEeccCcceEEEecccc
Confidence 99999999 8985 4578899999999999999877 9999999977 89999998 466899999999999987543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-22 Score=142.55 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=122.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceee------------eecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT------------RSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~ 67 (188)
+.||+.|..|++.+.....+|+|-...+... .-++|...+++.+|+|.. ..+++++.||++++|++.
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 4789999999988888999999965432221 234799999999999955 678999999999999998
Q ss_pred Ccccccceeeec----cCCceeEE-eecCCCEEEEecCCCeEEEEecccCe--eeeec-ccCCC-cceeEEEeeCCCCEE
Q 029743 68 YFKDCSDRFVGL----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPI-AEHSE-YPIESLALSHDRKFL 138 (188)
Q Consensus 68 ~~~~~~~~~~~~----~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~--~~~~~-~~~~~-~~v~~~~~~~~~~~l 138 (188)
..+..++.+... ..-+++.+ |+|+|+.+++|+.||.|.+|+..+.. +...+ .+|.. ..|+++.|+++|++|
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 766666666531 12235555 89999999999999999999975432 22222 34432 269999999999999
Q ss_pred EEEeCCCcEEEEeCCCccC
Q 029743 139 GSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~ 157 (188)
++-+.|+++++||++....
T Consensus 380 lSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred hhccCCCceeeeecccccc
Confidence 9999999999999997653
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=146.86 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=123.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
|.||.+ ++|++++.|.+|++|.+...++++.|. |...|+|++|+| |.++|++|+-|+.++||++.. ..+.....
T Consensus 375 lSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~D- 449 (712)
T KOG0283|consen 375 LSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD--KKVVDWND- 449 (712)
T ss_pred cccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCc--CeeEeehh-
Confidence 457765 589999999999999999999999987 999999999999 889999999999999999964 44444544
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc--cC-----CCcceeEEEeeCCC-CEEEEEeCCCcEEEE
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA--EH-----SEYPIESLALSHDR-KFLGSISHDSMLKLW 150 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~--~~-----~~~~v~~~~~~~~~-~~l~~~~~d~~i~iw 150 (188)
-...|+++ |.|+|++.+.|+.+|.+++|+....+...... .+ .+..|+++.|.|.. ..+++.+.|..|+||
T Consensus 450 l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~ 529 (712)
T KOG0283|consen 450 LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIY 529 (712)
T ss_pred hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEE
Confidence 55789999 89999999999999999999987665443321 11 11269999999743 457788899999999
Q ss_pred eCCCcc
Q 029743 151 DLDDIL 156 (188)
Q Consensus 151 d~~~~~ 156 (188)
|++...
T Consensus 530 d~~~~~ 535 (712)
T KOG0283|consen 530 DGRDKD 535 (712)
T ss_pred eccchh
Confidence 996544
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=131.62 Aligned_cols=148 Identities=14% Similarity=0.282 Sum_probs=125.9
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCC--EEEEecCCCeEEEEEeCCcccccceeeeccCC
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 82 (188)
-++.++++|+.|.+|+|||++....+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+.... .++..+++ |..
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~-H~~ 128 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKA-HKG 128 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecc-ccc
Confidence 3689999999999999999999888888888999999999998764 8999999999999999875 88889999 999
Q ss_pred ceeEE-eecCCCEEEEecCCCeEEEEecccC-------------------------------------------------
Q 029743 83 SVDAL-LKLDEDRVITGSENGLISLVGILPN------------------------------------------------- 112 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~------------------------------------------------- 112 (188)
.|+.+ .+|.|++.++.+.|+.+++||+-.|
T Consensus 129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~ 208 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP 208 (362)
T ss_pred ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc
Confidence 99999 7999999999999999999998221
Q ss_pred -------------------------------eeeeecccCCCcceeEEEe--eCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 113 -------------------------------RIIQPIAEHSEYPIESLAL--SHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 113 -------------------------------~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
.+...+.+|.. +|.++.+ .|++.+|++++.||.|+|||++..
T Consensus 209 ~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~-RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 209 KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN-RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchh-heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 12333446654 7888874 356789999999999999999876
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-22 Score=139.71 Aligned_cols=162 Identities=12% Similarity=0.119 Sum_probs=136.5
Q ss_pred eeecc-cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
.|+|- ...|++++.|+.|.+||++.+.+++.+. ..-....|+|+|.+-.+++++.|..++.||++.-..++....+ |
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d-h 271 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD-H 271 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcc-c
Confidence 57774 4557788899999999999988877665 3456689999998888999999999999999987788999999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
...+..+ |+|.|+-+++|+.|.+|+||..+.+.....+....-..|.++.|+.|.+++++|+.|+.|++|...-.....
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 9999999 999999999999999999999988776555433322379999999999999999999999999988776666
Q ss_pred CCCCcc
Q 029743 160 GNNISQ 165 (188)
Q Consensus 160 ~~~~~~ 165 (188)
.+...|
T Consensus 352 v~t~rE 357 (433)
T KOG0268|consen 352 VITPRE 357 (433)
T ss_pred CCChhH
Confidence 555444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=128.19 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=129.4
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
+|+-++.+++.....|.|.|.....-+++..+++|+....||.|+|+|++|++|+.|..+.+||++. --+++.+.. +.
T Consensus 154 ~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isR-ld 231 (313)
T KOG1407|consen 154 SWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISR-LD 231 (313)
T ss_pred eecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeecc-cc
Confidence 5666666666666679999999999999999999999999999999999999999999999999975 578888888 99
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC---------CcEEEEe
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---------SMLKLWD 151 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd 151 (188)
-+|+.+ |+.+|++|++++.|..|-|=++++|..+..++.. + +...++|+|....|+-++.| |.|++|-
T Consensus 232 wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-~-~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG 309 (313)
T KOG1407|consen 232 WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE-G-PTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFG 309 (313)
T ss_pred CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc-C-CceeEEecCCCceeeEEecCCCCccccccceeEEec
Confidence 999999 9999999999999999999999999999988755 3 78999999999999877644 4566665
Q ss_pred CC
Q 029743 152 LD 153 (188)
Q Consensus 152 ~~ 153 (188)
+.
T Consensus 310 ~~ 311 (313)
T KOG1407|consen 310 LS 311 (313)
T ss_pred CC
Confidence 43
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=128.07 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=128.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-ccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-KDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~ 79 (188)
|+.+|-+..+++++.|++|++||++..++...+.. ..-..++|.|.|-++|++.....|++||++.. +.+..++.-.
T Consensus 106 L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 106 LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred EEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 46789889999999999999999998777666543 23346789999999999998889999999863 4555555430
Q ss_pred --cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCc--ceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 80 --SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY--PIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 80 --~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.......+ |+|+|++++.++..+.+++.|.-.|....++..+... ---+.+|.||++++++++.||+|.+|++++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 24567788 9999999999999999999999999988888766531 124678999999999999999999999988
Q ss_pred ccCCCCC
Q 029743 155 ILKGSGN 161 (188)
Q Consensus 155 ~~~~~~~ 161 (188)
+......
T Consensus 264 g~~v~~~ 270 (311)
T KOG1446|consen 264 GKKVAVL 270 (311)
T ss_pred CcEeeEe
Confidence 7654443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-21 Score=144.05 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=136.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc----cccc----
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCS---- 73 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~---- 73 (188)
.|-|.+++++.|...|.+.+||+.+...+..+++|.+.+++++.+||++.+++++.|.+|++||+... +...
T Consensus 419 ~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls 498 (888)
T KOG0306|consen 419 KFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS 498 (888)
T ss_pred EecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence 47788999999999999999999998888888999999999999999999999999999999998421 1111
Q ss_pred ----ceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 74 ----DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 74 ----~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
+++. -...+.|+ +||||++|+++-.|++|++|-+.+-+....+.+|.- ||.++..+||++.+++|+.|..|+
T Consensus 499 l~~~rtLe--l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL-PV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 499 LKHTRTLE--LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-PVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred eccceEEe--ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc-ceeEEeccCCcCeEEeccCCCceE
Confidence 1122 35678899 899999999999999999999999999999999976 999999999999999999999999
Q ss_pred EEeCCCccCCCC
Q 029743 149 LWDLDDILKGSG 160 (188)
Q Consensus 149 iwd~~~~~~~~~ 160 (188)
+|-+.-+.+...
T Consensus 576 iWGLdFGDCHKS 587 (888)
T KOG0306|consen 576 IWGLDFGDCHKS 587 (888)
T ss_pred Eeccccchhhhh
Confidence 999998876543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=141.78 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=134.1
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCc--ee--------eeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNT--VQ--------TRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~--~~--------~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
-++..++|+|+.|+.|.+||+.++. .+ ..+. ++...|.+++.++.|..|++|+..+.+++||.++ ...
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~k 205 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKK 205 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccc
Confidence 4577889999999999999999762 22 2233 7888999999999999999999999999999987 566
Q ss_pred cceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
+..+++ |+..|+++ .++||+.+++++.||+|++||+...+|+.++..|.+ .|+++..+|+=.++++|+.|+.|+.=|
T Consensus 206 imkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 206 IMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred eeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecc
Confidence 777889 99999999 699999999999999999999999999999999988 699999999999999999999999999
Q ss_pred CCCcc
Q 029743 152 LDDIL 156 (188)
Q Consensus 152 ~~~~~ 156 (188)
+++..
T Consensus 284 l~n~~ 288 (735)
T KOG0308|consen 284 LRNPA 288 (735)
T ss_pred cCCch
Confidence 99853
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-21 Score=145.83 Aligned_cols=153 Identities=24% Similarity=0.306 Sum_probs=134.6
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
+-....+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++|+.|+.|++||+.+ .+++..+.+ |...
T Consensus 298 ~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-~~cl~sl~g-H~~~ 373 (537)
T KOG0274|consen 298 TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-GKCLKSLSG-HTGR 373 (537)
T ss_pred EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-ceeeeeecC-Ccce
Confidence 3345667888999999999999999999999999999999996 88999999999999999986 799999999 9999
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccC-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
|.++ +.+. .++++|+.|+.|++||+++. +++.++.+|.. -+..+.+ .+++|++++.|++|++||.+........
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeee
Confidence 9998 4444 89999999999999999999 99999999965 5655554 6789999999999999999998877666
Q ss_pred CCc
Q 029743 162 NIS 164 (188)
Q Consensus 162 ~~~ 164 (188)
+..
T Consensus 450 ~~~ 452 (537)
T KOG0274|consen 450 EGR 452 (537)
T ss_pred ccC
Confidence 553
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-20 Score=126.33 Aligned_cols=154 Identities=16% Similarity=0.243 Sum_probs=134.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC--CCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~ 78 (188)
|.|+++|.+|++++.|..+++||..++..++++..+...+..++|......++.++. |.+|+..++.. .+.++.+.|
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d-NkylRYF~G 98 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD-NKYLRYFPG 98 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec-CceEEEcCC
Confidence 579999999999999999999999999999999888888999999888888877777 78999999976 689999999
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|...|..+ .+|-+..+++++.|++|++||++..++...+..... + .++|.|.|-++|++.....|++||++....
T Consensus 99 -H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 99 -HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-P--IAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred -CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-c--ceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 99999999 799999999999999999999998887766654422 3 478999999999888777999999998754
Q ss_pred CC
Q 029743 158 GS 159 (188)
Q Consensus 158 ~~ 159 (188)
.+
T Consensus 175 gP 176 (311)
T KOG1446|consen 175 GP 176 (311)
T ss_pred CC
Confidence 44
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=143.87 Aligned_cols=153 Identities=11% Similarity=0.171 Sum_probs=130.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec-
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~- 79 (188)
++|+-+|+++|.|+.|-.|++.+..+......+.+|.++|.++.|+|++++|++.+.||+|++|++.. +.+..++.+.
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~ 180 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVD 180 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCC
Confidence 46888999999999999999999999888889999999999999999999999999999999999975 4555544320
Q ss_pred -----c-CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCC-cceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 80 -----S-PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 80 -----~-~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
. ...+..+ |+|+|..++..+.++.|++|+...++....+..... ..+..+.|+|+|+|||+++.+|.|.|||
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 1 1223344 899999999999999999999999988877754322 2488999999999999999999999999
Q ss_pred CCC
Q 029743 152 LDD 154 (188)
Q Consensus 152 ~~~ 154 (188)
.++
T Consensus 261 v~t 263 (933)
T KOG1274|consen 261 VDT 263 (933)
T ss_pred ccc
Confidence 996
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-22 Score=147.99 Aligned_cols=154 Identities=18% Similarity=0.243 Sum_probs=140.2
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
.++.+++|+.+..+.+|.+.....+..+.+|..+|.++.|++....|++|+.+|+|++||+.. ...++++.+ |...+.
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtg-h~~~~~ 116 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTG-HLLNIT 116 (825)
T ss_pred cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhc-cccCcc
Confidence 357789999999999999988777778899999999999999999999999999999999986 678889999 999999
Q ss_pred EE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCC
Q 029743 86 AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 86 ~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (188)
.+ |+|-+.+.+.|+.|+.+.+||++...|...+.+|.. .|..+.|+|+|++++.++.|..++|||+..+......+
T Consensus 117 sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 117 SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred eeeeccceEEeccccccccceehhhhccCceeeecCCcc-eeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 99 999999999999999999999998889999999876 79999999999999999999999999998776655444
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-21 Score=141.55 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=137.4
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCce--eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.+.|||+.|++|+.-.++.|||+....+ ...+........+++.+||.+..+++..||.|.|||+.+ ...++.+++
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn-q~~VrqfqG- 549 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQG- 549 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc-ceeeecccC-
Confidence 3679999999999999999999986543 334444445678999999999999999999999999986 688999999
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
|...+.|+ .+++|..|.+|+.|++|+-||+++++.+.+.... . +|.++..+|++.+|+.|-..+.+.|-........
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~-S-QIfSLg~cP~~dWlavGMens~vevlh~skp~ky 627 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-S-QIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY 627 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh-h-hheecccCCCccceeeecccCcEEEEecCCccce
Confidence 99999999 8999999999999999999999999887766544 3 7999999999999999999999999888877665
Q ss_pred CCCCCcc
Q 029743 159 SGNNISQ 165 (188)
Q Consensus 159 ~~~~~~~ 165 (188)
+...|+.
T Consensus 628 qlhlheS 634 (705)
T KOG0639|consen 628 QLHLHES 634 (705)
T ss_pred eeccccc
Confidence 5544443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=145.40 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=130.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------- 69 (188)
++|+|++.+|++++.|++|.||+..+.+.+..+.+|...|..+.|.|-|++|++-+.|++|++|.....
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 579999999999999999999999999999999999999999999999999999999999999996431
Q ss_pred -----------------------------cc-----------ccceeeeccCCceeEE-eec-----CCC----------
Q 029743 70 -----------------------------KD-----------CSDRFVGLSPNSVDAL-LKL-----DED---------- 93 (188)
Q Consensus 70 -----------------------------~~-----------~~~~~~~~~~~~v~~~-~~~-----~~~---------- 93 (188)
.. .-..+.+ |..++.++ |+| ..+
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcc
Confidence 00 0112347 88899999 866 122
Q ss_pred --EEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 94 --RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 94 --~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.+++|+.|+.|.||.....+++..+..-.+..|.+++|+|||..|+.++.||+|.++.++....
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 5788999999999998777776655433344799999999999999999999999999887553
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-21 Score=133.76 Aligned_cols=163 Identities=17% Similarity=0.239 Sum_probs=128.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------- 69 (188)
+.|.++++.+++++.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|.+|++||+...
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc
Confidence 467889999999999999999999999999999999999999988765544667776666666666431
Q ss_pred ---------------------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccC
Q 029743 70 ---------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 70 ---------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 121 (188)
..+..... -.+.++++ .+++|..+.+++.|.++.+.|+++.+....+.+.
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc
Confidence 12222222 23467888 7889999999999999999999998877776543
Q ss_pred C---CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCCCcc
Q 029743 122 S---EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQ 165 (188)
Q Consensus 122 ~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 165 (188)
. ...++.+.|+|++.|+++|+.||.|+||++.+++.+.....+.
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence 2 1247889999999999999999999999999988766554433
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-20 Score=130.17 Aligned_cols=155 Identities=11% Similarity=0.143 Sum_probs=129.6
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCC-------ceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
++|+| +.+.+|+|+.|.+|.||.+..+ +++..+.+|...|--++|+|.. +.|++++.|..|.+|++.++ .
T Consensus 87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg-e 165 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG-E 165 (472)
T ss_pred cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC-c
Confidence 46888 5677999999999999999754 3456778999999999999954 78899999999999999874 5
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe---CCCcE
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS---HDSML 147 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i 147 (188)
.+-.+. |...+.++ |+.+|.++++.+.|..|+|||.++++.+..-.+|.+..-..+.|-.++..+.+|- .+.++
T Consensus 166 ali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~ 243 (472)
T KOG0303|consen 166 ALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQI 243 (472)
T ss_pred eeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccce
Confidence 444454 88999999 9999999999999999999999999999888888776677788988998444442 57899
Q ss_pred EEEeCCCccCC
Q 029743 148 KLWDLDDILKG 158 (188)
Q Consensus 148 ~iwd~~~~~~~ 158 (188)
-+||..+....
T Consensus 244 aLwdp~nl~eP 254 (472)
T KOG0303|consen 244 ALWDPNNLEEP 254 (472)
T ss_pred eccCcccccCc
Confidence 99998876543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=128.26 Aligned_cols=154 Identities=16% Similarity=0.247 Sum_probs=127.7
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
.+.||+|+.|.+|++||+.++++..++..|...|.++.|+| ....|++|+.|+++.+.|.+.....-..++ ..+.|-
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VE 333 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVE 333 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceE
Confidence 45689999999999999999999999999999999999999 458899999999999999986333333343 456677
Q ss_pred EE-eec-CCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 86 AL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 86 ~~-~~~-~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
.+ |.| ....++++..||.|+-+|+|. ++++.++.+|.+ +|+++++++.- .+|++++.|+.|++|++.........
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 77 766 445778888999999999997 589999999976 89999998754 46789999999999999876665444
Q ss_pred CC
Q 029743 162 NI 163 (188)
Q Consensus 162 ~~ 163 (188)
.+
T Consensus 413 ~~ 414 (463)
T KOG0270|consen 413 EH 414 (463)
T ss_pred cc
Confidence 33
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=122.05 Aligned_cols=149 Identities=16% Similarity=0.247 Sum_probs=124.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|.|+|.++.|++++.||.+++|++........+. |..++.+++|.+ ...+++|+-||.|+++|+..+ . ...+.. |
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~-~-~~~igt-h 93 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG-N-EDQIGT-H 93 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC-c-ceeecc-C
Confidence 4688999999999999999999999876665665 889999999986 678899999999999999862 3 334445 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
..+++|+ +.+....+++|+.|++|++||.+.......+... + .|.++.. .+..|++|+.+..|.+||+++....
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-k-kVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-K-KVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEP 168 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-c-eEEEEec--cCCEEEEeecCceEEEEEcccccch
Confidence 9999999 7888889999999999999999986666666555 3 6888776 4778999999999999999987643
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-20 Score=125.99 Aligned_cols=151 Identities=15% Similarity=0.212 Sum_probs=113.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC-----ceee-eec----------------------------------------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-----TVQT-RSE---------------------------------------- 34 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~-----~~~~-~~~---------------------------------------- 34 (188)
|+|+.||++|++++.|+.|++|++++- ++++ .++
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~ 171 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS 171 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC
Confidence 689999999999999999999998641 1110 000
Q ss_pred -------------ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecC
Q 029743 35 -------------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE 100 (188)
Q Consensus 35 -------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~ 100 (188)
.|.-.+..+-...++.+|++++.|..|.+|+++ ++.++.+.. ....-+.. .+|+|+++++++-
T Consensus 172 ~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idt-nq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 172 HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDT-NQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred cccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeecc-ccccccceeeCCCCcEEEEecC
Confidence 011222333333345688999999999999997 677877765 44433434 6999999999998
Q ss_pred CCeEEEEecc---cC-----eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 101 NGLISLVGIL---PN-----RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 101 d~~v~~~d~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
.-.|++|.+- .| ..+..+.+|.. .|..++|+++.+.+++.+.||.+++||++-.
T Consensus 249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred CCCceEEEEEeccCcchhhhhhhheeccchh-heeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 8889999863 22 24667889976 7999999999999999999999999998743
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-19 Score=116.94 Aligned_cols=159 Identities=14% Similarity=0.181 Sum_probs=126.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC------C-----ce---e-eeecccccceEEEEEEeCCCEEEEecCCCeEEEEE
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK------N-----TV---Q-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~------~-----~~---~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 65 (188)
++|+|.|.+.+.|+...+++|..... + ++ + +.-+.|.+.|.|.+|+|.|++|++|+.|..|++..
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~ 117 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLP 117 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEe
Confidence 57999999999999999999875432 1 11 1 12235888999999999999999999999999876
Q ss_pred eCCc---------------------------------------------------ccccceeeeccCCceeEEeecCCCE
Q 029743 66 WGYF---------------------------------------------------KDCSDRFVGLSPNSVDALLKLDEDR 94 (188)
Q Consensus 66 ~~~~---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~ 94 (188)
++.. ++.++.+.+ |.+-+.++++-+|-.
T Consensus 118 fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg-htghilalyswn~~m 196 (350)
T KOG0641|consen 118 FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG-HTGHILALYSWNGAM 196 (350)
T ss_pred cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC-CcccEEEEEEecCcE
Confidence 5421 233444556 788888888888999
Q ss_pred EEEecCCCeEEEEecccCeeeeecccC------CCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 95 VITGSENGLISLVGILPNRIIQPIAEH------SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 95 l~~~~~d~~v~~~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+++|+.|.+|++||++-..++.++... ....|.+++..|.|+.|++|..|....+||++.....+.
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~ 268 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR 268 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee
Confidence 999999999999999988888776321 113689999999999999999999999999998775543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-20 Score=125.50 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=133.3
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 82 (188)
|-..|+.+++++.|.+..+||+++++.+..+.+|....+.++-+|..+++++++.|.+.++||++..-..+..|++ |..
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-Htd 358 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HTD 358 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-ccc
Confidence 4456889999999999999999999999999999999999999999999999999999999999866677888999 999
Q ss_pred ceeEEeecCCCEEEEecCCCeEEEEecccC-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 83 SVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.++++....+..+++|+.|.+|++||+++. .++.++...+ +++.++.+..++.++.-..+..|++||++....
T Consensus 359 tVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 359 TVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred ceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEecCCCcc
Confidence 999994344567889999999999999874 4777777653 789999998888888888889999999987653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=123.00 Aligned_cols=146 Identities=15% Similarity=0.260 Sum_probs=117.7
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCc----------eee-----eecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNT----------VQT-----RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~----------~~~-----~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~ 69 (188)
.|+++++|+.||.|.+||++... .+. .-.+|...|..+.|-| |.-++.+++.|.++++||..+.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 58999999999999999997532 011 1126788899999999 6678889999999999999763
Q ss_pred ccccceeeeccCCceeEE-eec---CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE-EEEEeCC
Q 029743 70 KDCSDRFVGLSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSISHD 144 (188)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d 144 (188)
+....+. ..+.|++- ++| ..-++++|..+-.|++.|+.+|....++.+|.+ .|.++.|+|...+ |++|+.|
T Consensus 135 -Q~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 135 -QEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred -eeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEeccCceeEEEecCCC
Confidence 4333444 45566665 566 244788888999999999999999999999988 7999999998776 5799999
Q ss_pred CcEEEEeCCCc
Q 029743 145 SMLKLWDLDDI 155 (188)
Q Consensus 145 ~~i~iwd~~~~ 155 (188)
|.|++||++..
T Consensus 211 g~irlWDiRra 221 (397)
T KOG4283|consen 211 GAIRLWDIRRA 221 (397)
T ss_pred ceEEEEEeecc
Confidence 99999999876
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=122.67 Aligned_cols=158 Identities=14% Similarity=0.165 Sum_probs=124.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCce-eeeec-----ccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSE-----FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
+.|.|++..+++-. +..|.+|++..+.. ...+. .+....++-+|+| +++.+++.+ |+++..||+++....
T Consensus 129 vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 129 VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhh
Confidence 35889999998876 79999999987654 33332 3456688889999 677777654 679999999974443
Q ss_pred cceeeeccCCceeEE-eecCCC-EEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEE
Q 029743 73 SDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLK 148 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~ 148 (188)
...-.. |...++.+ |+|+-+ +|++++.||.|++||.+. ..++..+.+|.. .|+++.|+|.- +.+++++.|..|.
T Consensus 207 ~sI~dA-Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 207 NSIEDA-HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH-WVWAVRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred cchhhh-hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce-EEEEEEecCccceEEEecCCCceeE
Confidence 333344 88899999 999766 678889999999999986 558899999976 89999999954 5668999999999
Q ss_pred EEeCCCccCCCCCC
Q 029743 149 LWDLDDILKGSGNN 162 (188)
Q Consensus 149 iwd~~~~~~~~~~~ 162 (188)
+|.......++.++
T Consensus 285 Lsca~svSSE~qi~ 298 (370)
T KOG1007|consen 285 LSCASSVSSEQQIE 298 (370)
T ss_pred EEeccccccccccc
Confidence 99988776655443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-20 Score=138.31 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=136.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeee---cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
++.++.|++.+.|+..|.|-+|++++|.....+ +.|..+|++++...-++.+++++.+|.++.||... +..+..+.
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~ 532 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLR 532 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC-cceeeeec
Confidence 467889999999999999999999999888777 58999999999988889999999999999999975 45555555
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
-...+.++ .+.....++.+..|-.|+++|..+.+.++.+.+|.+ .|++++|+|||++|++++.|++|++||+.++.
T Consensus 533 --l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-ritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 533 --LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-RITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred --cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-ceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 34556666 688888999999999999999999999999999977 89999999999999999999999999999886
Q ss_pred CCC
Q 029743 157 KGS 159 (188)
Q Consensus 157 ~~~ 159 (188)
...
T Consensus 610 lID 612 (910)
T KOG1539|consen 610 LID 612 (910)
T ss_pred eee
Confidence 443
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=131.57 Aligned_cols=154 Identities=12% Similarity=0.144 Sum_probs=124.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC--ce-eeeeccccc--ceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TV-QTRSEFSEE--ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~--~~-~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++|+|+|+++|+|..||.|.+|+.... ++ ...-.+|.. .|+++.|+++|++|++-+.|+++++||+++.++++..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 479999999999999999999997542 22 222346776 8999999999999999999999999999988788777
Q ss_pred eeeccC---CceeEEeecCCCEEEEecC------CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCc
Q 029743 76 FVGLSP---NSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (188)
Q Consensus 76 ~~~~~~---~~v~~~~~~~~~~l~~~~~------d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 146 (188)
..+ -. ....|+|+|+.+++++|.. .|.+.+||..+...+..+... ...|..+.|+|.=+.|..++.||.
T Consensus 403 ~tg-L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 403 RTG-LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred hcC-CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecCCCc
Confidence 654 22 2234559999999999863 467999999888888887665 347889999998888888999999
Q ss_pred EEEEeCCCcc
Q 029743 147 LKLWDLDDIL 156 (188)
Q Consensus 147 i~iwd~~~~~ 156 (188)
++||-=.+..
T Consensus 481 ~~vyYdp~~S 490 (641)
T KOG0772|consen 481 AHVYYDPNES 490 (641)
T ss_pred eEEEECcccc
Confidence 9998655543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-19 Score=117.49 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=120.5
Q ss_pred ccCeEEEEeCCCcEEEEEcCCC---ceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcc-cccceeeec
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGL 79 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~ 79 (188)
-|+.|++++.|++|+|+.++.. +++..+.+|.++|+.++|.. .|.+|++++.||.|.||.-..+. ........
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-
Confidence 4789999999999999999753 56778899999999999976 89999999999999999976531 22333456
Q ss_pred cCCceeEE-eec--CCCEEEEecCCCeEEEEecccC---eeeeecccCCCcceeEEEeeCC---C-----------CEEE
Q 029743 80 SPNSVDAL-LKL--DEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLALSHD---R-----------KFLG 139 (188)
Q Consensus 80 ~~~~v~~~-~~~--~~~~l~~~~~d~~v~~~d~~~~---~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~ 139 (188)
|...+.++ |.| -|-.|++++.||.|.+.+.+.. ........|.- .|++++|.|. | +.|+
T Consensus 101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-ccceeeecCcCCCccccccCcccccceee
Confidence 88899999 655 4668999999999999988754 12334566755 6999999985 4 5699
Q ss_pred EEeCCCcEEEEeCCCc
Q 029743 140 SISHDSMLKLWDLDDI 155 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (188)
+|+.|+.|+||+..+.
T Consensus 180 SgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFDSD 195 (299)
T ss_pred ccCCccceeeeecCCc
Confidence 9999999999998874
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=130.72 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=128.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce-----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----- 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----- 75 (188)
|+.|||.+..+++..||.|.|||+.+...++.+++|...+.||..+++|..|.+|+-|.+|+.||++...+..+.
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQ 594 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQ 594 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhh
Confidence 578999999999999999999999999999999999999999999999999999999999999999864221110
Q ss_pred ----------------------------------eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeeccc
Q 029743 76 ----------------------------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (188)
Q Consensus 76 ----------------------------------~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~ 120 (188)
+.- |...|.++ |.+.|+.+++.+.|+.+-.|...-|..+.+...
T Consensus 595 IfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl-heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE 673 (705)
T KOG0639|consen 595 IFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE 673 (705)
T ss_pred heecccCCCccceeeecccCcEEEEecCCccceeecc-cccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc
Confidence 112 56667788 889999999999999999998888888877765
Q ss_pred CCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 121 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.+ .|.++.++.|.+++++|+.|..-.||.+
T Consensus 674 ~S--sVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SS--SVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cC--cceeeeeccCceEEEecCCCcceEEEEE
Confidence 53 7999999999999999999988888865
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=118.67 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=121.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCC--EEEEecCCCeEEEEEeCCcccccceee-
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~- 77 (188)
++|+.||..+++|+.|+.+++||+.+++. ..+..|..+|..+.|-+... .|++|+.|.+|+.||.+.. .++.++.
T Consensus 78 v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~L 155 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQL 155 (347)
T ss_pred EEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeeec
Confidence 47999999999999999999999999966 45667999999999988654 8999999999999999853 2222210
Q ss_pred ------------------------------------e---ccCCceeEE-eecCCCEEEEecCCCeEEEEecccC--eee
Q 029743 78 ------------------------------------G---LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RII 115 (188)
Q Consensus 78 ------------------------------------~---~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~--~~~ 115 (188)
. --+-.++|+ +.++....+.|+.+|.+.+..+..+ +.-
T Consensus 156 PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 156 PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 0 012246777 5677777799999999999888775 333
Q ss_pred eecccCC--------CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 116 QPIAEHS--------EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 116 ~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
.+++.|. -+.|++++|+|....|++++.||++.+||-.......
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh
Confidence 3444443 2468899999999999999999999999987655443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=119.67 Aligned_cols=147 Identities=16% Similarity=0.233 Sum_probs=123.3
Q ss_pred eEEEEeCCCcEEEEEcCCC------------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 9 KLLGTSGDGTLSVCNLRKN------------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
.+++|+....|.=+++.-. .++..+..|.+.+++++. ++.++++|+.|.+|+|||++. ...+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k-~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK-RKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccc-hhhhcce
Confidence 3677787777766665321 124456689999999998 589999999999999999986 5667777
Q ss_pred eeccCCceeEE-eecCCC--EEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 77 VGLSPNSVDAL-LKLDED--RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~--~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.. |.+.++++ |.++-. .|++|+.||.|.+|+.....++..+.+|.+ +|+.++.+|.++..++.+.|+.+++||+-
T Consensus 80 l~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 80 LS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhh
Confidence 77 99999999 866544 899999999999999999999999999987 79999999999999999999999999998
Q ss_pred CccCCCC
Q 029743 154 DILKGSG 160 (188)
Q Consensus 154 ~~~~~~~ 160 (188)
++.....
T Consensus 158 ~Gr~a~v 164 (362)
T KOG0294|consen 158 RGRVAFV 164 (362)
T ss_pred cCcccee
Confidence 8765433
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-20 Score=123.74 Aligned_cols=151 Identities=15% Similarity=0.223 Sum_probs=130.5
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCce
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v 84 (188)
.+....++++.|-+-++||.-+|..+..+. |...|.+++|+.|.++|++|+.+..+++||++....+...+.+ |.+.|
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g-htg~I 146 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG-HTGGI 146 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC-CCCcc
Confidence 344456777888899999999999888886 8889999999999999999999999999999887788888999 99999
Q ss_pred eEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+.+ |....+.+++...|++|++||.+++..++.+.... +|+++.++++|++|.++ ..+.|.+||..+......
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEe-cCceeEEeccccccceee
Confidence 999 77767788888999999999999999999998763 79999999999877544 677899999988765443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=133.58 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=85.5
Q ss_pred EEEEecCCCeEEEEEeCCcccccceeeec--cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCccee
Q 029743 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127 (188)
Q Consensus 51 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~ 127 (188)
++++++.|.+|+||++.. +...+.|++. |.+....+ ..|.|.|+++.+.|.++-++|.-+++++.++.+|.+ .|+
T Consensus 610 ~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-~VT 687 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-AVT 687 (1080)
T ss_pred eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch-hee
Confidence 566777788888888865 4566666552 33344445 689999999999999999999999999999999987 899
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 128 SLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 128 ~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.+.|.+|.++|++.+.||.|.||.+..
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999998764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=121.95 Aligned_cols=146 Identities=9% Similarity=0.210 Sum_probs=112.9
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCC---ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC--cccccc
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDCSD 74 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~~~~~~ 74 (188)
|+|||. ...+++|+-|++|+|||++.+ .++ ..+.|.+-|+.|.|+....+|++|+.||+++|||+++ .+.++.
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce
Confidence 578885 456889999999999999987 233 3378999999999999888999999999999999985 346788
Q ss_pred eeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCe-------------------eeeecccCCCcceeEEEeeC
Q 029743 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR-------------------IIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~~ 133 (188)
.++. |+.+|+++ |+| +...+++++.|.+|.+||+.... +++.-.+. . .+..+.|++
T Consensus 342 ~fk~-Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ-k-e~KevhWH~ 418 (440)
T KOG0302|consen 342 TFKY-HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ-K-EVKEVHWHR 418 (440)
T ss_pred eEEe-ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch-h-Hhhhheecc
Confidence 8999 99999999 988 45678888999999999985321 11111222 2 578899998
Q ss_pred CC-CEEEEEeCCCcEEEEe
Q 029743 134 DR-KFLGSISHDSMLKLWD 151 (188)
Q Consensus 134 ~~-~~l~~~~~d~~i~iwd 151 (188)
.- .+|++.+.|| +.||.
T Consensus 419 QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 419 QIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CCCCeEEEecccc-eeEEE
Confidence 54 3667777776 44443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=118.74 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=124.9
Q ss_pred eec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC---CCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 3 FAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 3 ~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
|-| |...+.+++.|.+++|||..+.+..-.++ -.+.|.+-+|+|- -.++++|..+-+|++.|+.. +....++.+
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsG 186 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSG 186 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-Ccceeeecc
Confidence 445 55677888899999999999988777776 4577888889883 34677888889999999986 799999999
Q ss_pred ccCCceeEE-eecCCC-EEEEecCCCeEEEEecccC-eeeeec--------------ccCCCcceeEEEeeCCCCEEEEE
Q 029743 79 LSPNSVDAL-LKLDED-RVITGSENGLISLVGILPN-RIIQPI--------------AEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~-~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
|...|.++ |+|... .|++|+.||.|++||++.. .+...+ .+|.+ .|.+++|..++.+++++
T Consensus 187 -Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g-kvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 187 -HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG-KVNGLAWTSDARYLASC 264 (397)
T ss_pred -ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccc-eeeeeeecccchhhhhc
Confidence 99999999 999766 5788999999999999854 233222 34544 79999999999999999
Q ss_pred eCCCcEEEEeCCCccCC
Q 029743 142 SHDSMLKLWDLDDILKG 158 (188)
Q Consensus 142 ~~d~~i~iwd~~~~~~~ 158 (188)
+.|..+++|+..++...
T Consensus 265 gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNT 281 (397)
T ss_pred cCccceEEeecccCccc
Confidence 99999999999887643
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-19 Score=132.20 Aligned_cols=136 Identities=21% Similarity=0.318 Sum_probs=120.3
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEEe
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL 88 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 88 (188)
.+++|+.|.++++|-.. ++...+++|+..|++++.-|.+ .+++|+.|.+|++|.- +..++++.+ |...|+.+.
T Consensus 114 ~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~g-HtD~VRgL~ 186 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSG-HTDCVRGLA 186 (745)
T ss_pred ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhhhcc-chhheeeeE
Confidence 38999999999999854 4555689999999999998877 8899999999999974 588999999 999999995
Q ss_pred ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 89 ~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
--++..++++++||.|++|++ +++++..+.+|.. -|+++....++..++++++|++++||+..
T Consensus 187 vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EecCCCeEeecCCceEEEEec-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 444557889999999999999 7899999999977 69999988888899999999999999987
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=122.82 Aligned_cols=143 Identities=15% Similarity=0.236 Sum_probs=118.4
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec---cCCc
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL---SPNS 83 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~~ 83 (188)
...+++|..|++|++||.+...+....+.+. .|+++..++++..+.+++.|.++.+.|+++ ......+... -...
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFKCASD 389 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccc-ccEEEEeeccccccccc
Confidence 3456777889999999999999888888654 999999999999999999999999999986 3544444320 1122
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCC-cceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.+.+ |||++.|+++|+.||.|+||++.++++...+..... ..|++++|+|.|..|++++.++.+.+|.
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 4444 899999999999999999999999998888765543 2599999999999999999999999983
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-18 Score=112.69 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=106.6
Q ss_pred CeeecccCeEEEEeC----------CCcEEEEEcCC-Cceeeeec-ccccceEEEEEEeCCCEEEEe--cCCCeEEEEEe
Q 029743 1 MTFAADAMKLLGTSG----------DGTLSVCNLRK-NTVQTRSE-FSEEELTSVVLMKNGRKVVCG--SQSGTVLLYSW 66 (188)
Q Consensus 1 l~~s~~~~~l~~~~~----------d~~i~i~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~~d~ 66 (188)
|.|+|+|++|+.-.. -+...+|-++. +.....+. ...++|.+++|+|+|+.|++. ..+..|.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 468999999876543 12344554422 22333333 234579999999999987654 45679999999
Q ss_pred CCcccccceeeeccCCceeEE-eecCCCEEEEecC---CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+ ...+..+ ....+..+ |+|+|+++++++. .|.|.+||+++.+.+...... .+..++|+|+|++|+++.
T Consensus 91 ~--~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~---~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 91 K--GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS---DATDVEWSPDGRYLATAT 162 (194)
T ss_pred c--ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC---cEEEEEEcCCCCEEEEEE
Confidence 6 3444444 34556777 8999999998864 467999999988888776533 478999999999999876
Q ss_pred C------CCcEEEEeCCCcc
Q 029743 143 H------DSMLKLWDLDDIL 156 (188)
Q Consensus 143 ~------d~~i~iwd~~~~~ 156 (188)
. |+.++||+.....
T Consensus 163 t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred eccceeccccEEEEEecCeE
Confidence 3 7899999987543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-19 Score=117.23 Aligned_cols=147 Identities=16% Similarity=0.234 Sum_probs=119.2
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCce--eeeecccccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCc-ccc-cceeeec
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYF-KDC-SDRFVGL 79 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~-~~~-~~~~~~~ 79 (188)
.|.+||+++.||.|.||.-..++- ......|...|++++|.|. |-.|++++.||.|.+.+++.. +-. .+....
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a- 147 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA- 147 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc-
Confidence 689999999999999999887732 3345589999999999995 468899999999999999764 222 233455
Q ss_pred cCCceeEE-eecC---C-----------CEEEEecCCCeEEEEecccCe--eeeecccCCCcceeEEEeeCCC----CEE
Q 029743 80 SPNSVDAL-LKLD---E-----------DRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDR----KFL 138 (188)
Q Consensus 80 ~~~~v~~~-~~~~---~-----------~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l 138 (188)
|...+.++ +.|. | +.|++|+.|+.|+||+..+++ .-.++.+|.+ .|+.++|.|.- .+|
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceee
Confidence 88888888 6553 4 569999999999999988754 3455899988 79999999953 578
Q ss_pred EEEeCCCcEEEEeCCC
Q 029743 139 GSISHDSMLKLWDLDD 154 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~ 154 (188)
++++.||++.||..+.
T Consensus 227 AS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKDE 242 (299)
T ss_pred EEecCCCcEEEEEecC
Confidence 9999999999998773
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.5e-18 Score=111.69 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=126.6
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeec--cc-----ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FS-----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++-++-.+++|+.|.+|++||++-..++.++. .| .+.|.+++..|.|++|++|..|....+||++. +++++.
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg-~r~iq~ 268 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQR 268 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC-Cceeee
Confidence 34567789999999999999999887777664 12 35799999999999999999999999999985 799999
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC----eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN----RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
+.. |...++|+ |+|...|+++++.|..|++-|++.. -++..+..|++ .+-.+.|+|..-.+++.+.|.++.+|
T Consensus 269 f~p-hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd-k~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 269 FHP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD-KAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred eCC-CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC-ceEEEEecCccceeeeccCcceEEEe
Confidence 999 99999999 9999999999999999999998742 23445566766 67778999998889999999999999
Q ss_pred eCC
Q 029743 151 DLD 153 (188)
Q Consensus 151 d~~ 153 (188)
.++
T Consensus 347 a~~ 349 (350)
T KOG0641|consen 347 ALN 349 (350)
T ss_pred ccC
Confidence 865
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-18 Score=117.86 Aligned_cols=147 Identities=14% Similarity=0.181 Sum_probs=115.4
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcccccceeeeccCC-ce
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-SV 84 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~v 84 (188)
..+|++...|.|++||..+++.+..+++++..+..+.|.. ....+.+++.||.|++||++...+..+.....+.+ +.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4578888899999999999999999999999999999987 45788999999999999999754443333221332 33
Q ss_pred eEEe-ecCCCEEEEecC----CCeEEEEecccCee-eeec-ccCCCcceeEEEeeCC-CCEEEEEeCCCcEEEEeCCCc
Q 029743 85 DALL-KLDEDRVITGSE----NGLISLVGILPNRI-IQPI-AEHSEYPIESLALSHD-RKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 85 ~~~~-~~~~~~l~~~~~----d~~v~~~d~~~~~~-~~~~-~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~ 155 (188)
.++. ...++.+++|.. +-.|.+||+|..+. +..+ ..|.+ .|+++.|+|. -..|++|+.||.|.+||++..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 4442 446778888763 56799999998765 5554 56766 8999999995 468899999999999999865
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=122.21 Aligned_cols=124 Identities=10% Similarity=0.132 Sum_probs=108.6
Q ss_pred eecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcc------cccceeeeccCCceeEE-eecC-CCEEEEecCCC
Q 029743 32 RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK------DCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENG 102 (188)
Q Consensus 32 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~ 102 (188)
.+.+|.++|..++|+| +...|++|+.|.+|.+|.+...+ .++..+.+ |...|.-+ |+|. .+.|++++.|+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCc
Confidence 3458999999999999 66889999999999999996432 45667889 99999988 8884 56889999999
Q ss_pred eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 103 LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 103 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
+|.+|++.+++.+.++. |.+ .|+++.|+.||.+|++++.|..|+|||.+++...
T Consensus 155 ~v~iWnv~tgeali~l~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVV 208 (472)
T ss_pred eEEEEeccCCceeeecC-CCC-eEEEEEeccCCceeeeecccceeEEEcCCCCcEe
Confidence 99999999999888887 777 8999999999999999999999999999987643
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=123.96 Aligned_cols=154 Identities=13% Similarity=0.273 Sum_probs=132.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceee-----------------ee-cccccceEEEEEEeCCCEEEEecCCCeEE
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-----------------RS-EFSEEELTSVVLMKNGRKVVCGSQSGTVL 62 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~-----------------~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 62 (188)
|+++|+.++.++++.+++|.-|++.++.... .- +.|...+.+++.++||++|++|+.|..|.
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~ 227 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQ 227 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEE
Confidence 4789999999999999999999987765320 11 26778899999999999999999999999
Q ss_pred EEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEE
Q 029743 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 63 ~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
||+.++ .+.++.+.+ |...|.++ |-.....+++++.|+.|++|+++....+.++.+|.+ .|.++....-++.+.+|
T Consensus 228 Iw~~~t-~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~IdaL~reR~vtVG 304 (479)
T KOG0299|consen 228 IWDCDT-LEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDALSRERCVTVG 304 (479)
T ss_pred EecCcc-cchhhcccc-cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeechhcccceEEec
Confidence 999987 688889999 99999999 555556799999999999999999999999999987 79898888777777788
Q ss_pred eCCCcEEEEeCCCccC
Q 029743 142 SHDSMLKLWDLDDILK 157 (188)
Q Consensus 142 ~~d~~i~iwd~~~~~~ 157 (188)
+.|+++++|++.....
T Consensus 305 grDrT~rlwKi~eesq 320 (479)
T KOG0299|consen 305 GRDRTVRLWKIPEESQ 320 (479)
T ss_pred cccceeEEEeccccce
Confidence 8999999999965443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=122.57 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=124.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce-----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----- 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----- 75 (188)
++|+++|..|++++.||++|||+......+.....|...|.++.|+|||+.|++-+.| ..++|+.+++ .+++.
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~~~ 227 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTPFS 227 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCCcc
Confidence 5899999999999999999999988887777778899999999999999999999999 8999999753 11100
Q ss_pred ---------------------e--e------------ec-------------cCCceeEE-eecCCCEEEEecCCCeEEE
Q 029743 76 ---------------------F--V------------GL-------------SPNSVDAL-LKLDEDRVITGSENGLISL 106 (188)
Q Consensus 76 ---------------------~--~------------~~-------------~~~~v~~~-~~~~~~~l~~~~~d~~v~~ 106 (188)
. . -. ....+.++ .+++|++++.|+.+|.|.|
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 0 0 00 12356777 6999999999999999999
Q ss_pred EecccCeeeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 107 VGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 107 ~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
++..+-+.++.+ +.|.. -|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 308 ~~~~~lq~~~~vk~aH~~-~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 308 YDAKSLQRLQYVKEAHLG-FVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEeceeeeeEeehhhhee-eeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999887776655 45644 899999999999999999999888887764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-19 Score=121.63 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=127.9
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEe------CCc-------------
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW------GYF------------- 69 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~------~~~------------- 69 (188)
.+.+++.|.+.+||.++++.++....+|.+.|.+++|++.+.++++++.|++.+||.. ...
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 5678889999999999999999999999999999999999999999999999999973 110
Q ss_pred --------------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeE
Q 029743 70 --------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES 128 (188)
Q Consensus 70 --------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~ 128 (188)
..++..+.+ |...+.+. |-..|+.+++++.|.+..+||+.+++++..+.+|.. ..+.
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELtH 319 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS-ELTH 319 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch-hccc
Confidence 123444677 88888888 778899999999999999999999999999999965 7889
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 129 LALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 129 ~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
++-+|..+.+++.+.|.+.++||++..
T Consensus 320 cstHptQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 320 CSTHPTQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred cccCCcceEEEEeccCceeEeccchhh
Confidence 999999999999999999999999854
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=121.11 Aligned_cols=149 Identities=11% Similarity=0.099 Sum_probs=114.8
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc------------------
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------------------ 69 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------------ 69 (188)
..+++|+.||.|+|||+....+...+.+|.+.|..|++.. ..+++++.|.+|+.|.+...
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 5689999999999999999999999999999999999975 67888899999998874321
Q ss_pred --------c-----------cccceeeeccCCceeEE-eecCCC-EEEEecCCCeEEEEecccCeeeee-----------
Q 029743 70 --------K-----------DCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQP----------- 117 (188)
Q Consensus 70 --------~-----------~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~~~~----------- 117 (188)
+ .+++.+.- ....+.++ |+|... .|+++..|+.|.|||++.+.++..
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Is 236 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTIC 236 (433)
T ss_pred ccccccccCceeeecccccCCccceeec-CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccccee
Confidence 1 12222222 23446677 778554 566777999999999987765432
Q ss_pred -------------------------------cccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 118 -------------------------------IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 118 -------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
..+|-. .|.++.|+|.|+.+++|+.|.+|+||..+.+..+..
T Consensus 237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred cCccccceeeccccccceehhhhhhcccchhhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhh
Confidence 234433 789999999999999999999999999998765543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.8e-19 Score=130.71 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=127.1
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCC-------ceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
+.|.| |.+.||.++.||.|++|.+..+ .+...+..|...|+++.|+| ..+.|++++.|.+|++||+.+ ..
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~ 711 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN-AK 711 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh-hh
Confidence 35777 7788999999999999998653 34556778999999999999 557899999999999999987 46
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeCCCCEEEEEeCC----C
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHD----S 145 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~ 145 (188)
....+.+ |...|..+ |+|+|+++++.+.||+|++|..++++ +++.-.+..+..--.+.|.-+|++++..+.| .
T Consensus 712 ~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeR 790 (1012)
T KOG1445|consen 712 LYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSER 790 (1012)
T ss_pred hhheecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchh
Confidence 6667889 99999999 89999999999999999999998765 4444444333334567898999999877755 5
Q ss_pred cEEEEeCCCccCC
Q 029743 146 MLKLWDLDDILKG 158 (188)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (188)
+|.+||.++....
T Consensus 791 Qv~~Y~Aq~l~~~ 803 (1012)
T KOG1445|consen 791 QVQMYDAQTLDLR 803 (1012)
T ss_pred hhhhhhhhhccCC
Confidence 7899998876533
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-18 Score=121.55 Aligned_cols=151 Identities=12% Similarity=0.087 Sum_probs=114.6
Q ss_pred Ceeeccc--CeEEEEeCCCcEEEEEcCC----CceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCc----
Q 029743 1 MTFAADA--MKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF---- 69 (188)
Q Consensus 1 l~~s~~~--~~l~~~~~d~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~---- 69 (188)
++|+|.. +++|+|+..|.|-+||+.+ ...+..+..|..+|.++.|+| +...+++.+.||+|++-|+...
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 4788854 5788888999999999952 233456678999999999999 4478888889999888776421
Q ss_pred ----------------------------------------ccccceeeeccCCceeEE-eecC-CCEEEEecCCCeEEEE
Q 029743 70 ----------------------------------------KDCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLV 107 (188)
Q Consensus 70 ----------------------------------------~~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~ 107 (188)
+.....+.- |...|..+ ++|. ..++++++.|++++||
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l-h~kKI~sv~~NP~~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL-HKKKITSVALNPVCPWFLATASLDQTAKIW 350 (498)
T ss_pred HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-hhcccceeecCCCCchheeecccCcceeee
Confidence 111222233 56678888 7884 4578999999999999
Q ss_pred ecccCe----eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 108 GILPNR----IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 108 d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
|++.-. ++.....|.. .|.+..|+|.+-.|++.+.|..|+|||..
T Consensus 351 D~R~l~~K~sp~lst~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 351 DLRQLRGKASPFLSTLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ehhhhcCCCCcceecccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 998532 2233345655 89999999988889999999999999984
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=127.45 Aligned_cols=155 Identities=17% Similarity=0.291 Sum_probs=132.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC-ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
++|.|+|++|++++.|+.|++|+.... +....+..+...|.+++. ++.+|++++.+++|.+|.+.. +..-..+..
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps-~~~~~iL~R- 94 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS-GEEDTILAR- 94 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC-CCccceeee-
Confidence 478999999999999999999997665 444444447777777776 566999999999999999976 454445555
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
..-+++++ ++.+|++++.|+.|-.|++.++........+.+|.. +|.++.|+|++.+||+.+.||.|++|++.++...
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 67788988 799999999999999999999999999999999965 9999999999999999999999999999987654
Q ss_pred CC
Q 029743 159 SG 160 (188)
Q Consensus 159 ~~ 160 (188)
..
T Consensus 174 ~t 175 (933)
T KOG1274|consen 174 KT 175 (933)
T ss_pred hh
Confidence 43
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=128.15 Aligned_cols=151 Identities=13% Similarity=0.226 Sum_probs=122.0
Q ss_pred cccCeEEE--EeCCCcEEEEEcCC-Ccee-eeec--ccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcc------c
Q 029743 5 ADAMKLLG--TSGDGTLSVCNLRK-NTVQ-TRSE--FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK------D 71 (188)
Q Consensus 5 ~~~~~l~~--~~~d~~i~i~~~~~-~~~~-~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~------~ 71 (188)
.+...+|. ++..|.|-||++.. |++. ..++ .....|+.+.|.| |...|++++.||.|++|.+...+ .
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t 668 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT 668 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC
Confidence 34444443 34568999999875 2221 1122 1345799999999 77899999999999999996432 3
Q ss_pred ccceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 72 CSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
+...+.. |...|+++ |+| ....|++++.|-+|++||+++++....+.+|.+ .|.+++|+|+|+.+++.+.||+|++
T Consensus 669 Pe~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 669 PEKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred cceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCceEEE
Confidence 4456788 99999999 988 567899999999999999999999999999988 8999999999999999999999999
Q ss_pred EeCCCccC
Q 029743 150 WDLDDILK 157 (188)
Q Consensus 150 wd~~~~~~ 157 (188)
|+.++...
T Consensus 747 y~Prs~e~ 754 (1012)
T KOG1445|consen 747 YEPRSREQ 754 (1012)
T ss_pred eCCCCCCC
Confidence 99887653
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-18 Score=128.60 Aligned_cols=144 Identities=17% Similarity=0.277 Sum_probs=127.6
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
-++.+++++.+|.+..|+......+..+. -...+.++..+.....++++..|-.|+++|+.+ ...++.+.+ |...++
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t-~kvvR~f~g-h~nrit 580 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT-RKVVREFWG-HGNRIT 580 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchh-hhhhHHhhc-ccccee
Confidence 45679999999999999999888777776 455788888888888999999999999999987 688899999 999999
Q ss_pred EE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC-CcEEEEeCCC
Q 029743 86 AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-SMLKLWDLDD 154 (188)
Q Consensus 86 ~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~ 154 (188)
.+ |||||+.|++++.|++|++||+.++.++-.+... . ++.++.|+|+|.+||+...| ..|++|.-..
T Consensus 581 d~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-~-~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-S-PCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-C-cceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 99 9999999999999999999999999998877655 3 78999999999999999988 7899996444
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.3e-17 Score=110.41 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=116.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC----ceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcc----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK---- 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~---- 70 (188)
+.|.+.|+.+|+++.|.+|+|||.... .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.=....
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence 468889999999999999999997543 44556678999999999976 67999999999999999752111
Q ss_pred ----cccceeeeccCCceeEE-eec--CCCEEEEecCCCeEEEEeccc--------------------------------
Q 029743 71 ----DCSDRFVGLSPNSVDAL-LKL--DEDRVITGSENGLISLVGILP-------------------------------- 111 (188)
Q Consensus 71 ----~~~~~~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~v~~~d~~~-------------------------------- 111 (188)
....++.. ....++.+ |.| -|-.+++++.||.++||+.-.
T Consensus 99 ~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 99 GRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred cceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 11233444 66788888 866 577889999999999997510
Q ss_pred -----------------------------------CeeeeecccCCCcceeEEEeeCCC----CEEEEEeCCCcEEEEeC
Q 029743 112 -----------------------------------NRIIQPIAEHSEYPIESLALSHDR----KFLGSISHDSMLKLWDL 152 (188)
Q Consensus 112 -----------------------------------~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~iwd~ 152 (188)
...+.++.+|.+ +|++++|.|+- ..|++++.|| |+||.+
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 001233445655 89999999953 4689999999 999999
Q ss_pred CCcc
Q 029743 153 DDIL 156 (188)
Q Consensus 153 ~~~~ 156 (188)
+...
T Consensus 256 ~~~~ 259 (361)
T KOG2445|consen 256 KVAR 259 (361)
T ss_pred eecc
Confidence 8654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-17 Score=112.56 Aligned_cols=147 Identities=16% Similarity=0.226 Sum_probs=118.8
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecc---cccceEEEEEEeCCCEEEEec--CCCeEEEEEeCCcccccceeeeccC
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
-+.|+++-. ..|+|||+++.+++.++.. +...+.++.+++.+.+++.-+ ..|.|.+||+.+ -+....+.. |.
T Consensus 97 r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a-H~ 173 (391)
T KOG2110|consen 97 RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA-HK 173 (391)
T ss_pred cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe-cC
Confidence 345555544 4599999999988887763 344456666666666887533 358999999976 577788888 99
Q ss_pred CceeEE-eecCCCEEEEecCCCe-EEEEecccCeeeeecccCC-CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 82 NSVDAL-LKLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+.+.++ |+++|.+||+++..|+ |||+.+.+|+.+.+|+... ...|++++|+|++++|++.+..++|++|.+++..
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 999999 8999999999999987 7999999999998886432 2478999999999999999999999999999876
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=110.72 Aligned_cols=145 Identities=17% Similarity=0.240 Sum_probs=116.8
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeec-----ccccceEEEEEEeCC----CEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSE-----FSEEELTSVVLMKNG----RKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
+.+++.+. +.+.+|.....--++.++ .|......++|+-+. .+++.++.-|.|++.|+.. +++...+.+
T Consensus 56 ~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~~g 133 (385)
T KOG1034|consen 56 QVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNYRG 133 (385)
T ss_pred ceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccceec
Confidence 34455444 678888876432222222 366677888887643 4788899999999999976 688888999
Q ss_pred ccCCceeEE-eecC-CCEEEEecCCCeEEEEecccCeeeeec---ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 79 LSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 79 ~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
|...|..+ ++|+ .+++++++.|..|++|++++..++..+ .+|.+ .|.++.|++++.++++++.|..|++|++.
T Consensus 134 -hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 134 -HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred -cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC-cEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 99999999 8884 578999999999999999999998876 56766 79999999999999999999999999999
Q ss_pred Ccc
Q 029743 154 DIL 156 (188)
Q Consensus 154 ~~~ 156 (188)
...
T Consensus 212 ~~~ 214 (385)
T KOG1034|consen 212 VKE 214 (385)
T ss_pred hhH
Confidence 654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=114.66 Aligned_cols=152 Identities=16% Similarity=0.229 Sum_probs=119.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEc-CCCce--eeeec-----ccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTV--QTRSE-----FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~-~~~~~--~~~~~-----~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
|+|+|||.+|++|.. +.|+++|+ +.|+. ..... +..+.+.+++|+| +.+.++.++....+-||.-.. +.
T Consensus 164 L~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~ 241 (406)
T KOG2919|consen 164 LQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RR 241 (406)
T ss_pred EEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-CC
Confidence 579999999998765 89999998 44422 11111 2356789999999 556899999988888888764 68
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecC-CCeEEEEeccc-CeeeeecccCCCcceeE--EEeeCCCCEEEEEeCCCc
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILP-NRIIQPIAEHSEYPIES--LALSHDRKFLGSISHDSM 146 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~v~~~d~~~-~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~d~~ 146 (188)
++..+-+ |.+.|+.+ |.++|+.|++|.. +..|..||++. ..++..+..|.+..-.. ....|++++|++|+.||.
T Consensus 242 pl~llgg-h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~ 320 (406)
T KOG2919|consen 242 PLQLLGG-HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS 320 (406)
T ss_pred ceeeecc-cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc
Confidence 8888889 99999999 8999999999985 67899999985 55666776654311222 455689999999999999
Q ss_pred EEEEeCCCc
Q 029743 147 LKLWDLDDI 155 (188)
Q Consensus 147 i~iwd~~~~ 155 (188)
|++||+++.
T Consensus 321 V~vwdlk~~ 329 (406)
T KOG2919|consen 321 VRVWDLKDL 329 (406)
T ss_pred EEEEecCCC
Confidence 999999984
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-17 Score=122.15 Aligned_cols=142 Identities=13% Similarity=0.167 Sum_probs=120.6
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
-|++ .+++|+.|.+|++|.- ++.++++.+|.+.|..+++-++ ..|++++.||.|++|++. ++++....+ |...
T Consensus 149 l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~--ge~l~~~~g-htn~ 221 (745)
T KOG0301|consen 149 LPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD--GEVLLEMHG-HTNF 221 (745)
T ss_pred cCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc--Cceeeeeec-cceE
Confidence 3444 8999999999999984 7888999999999999999875 467899999999999994 688888999 9999
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
++++ ..+++..+++++.|+++++|+.. ++.+.+.-+.. .|+++.+-++|.. ++|+.||.|+||......
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt-siWsa~~L~NgDI-vvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT-SIWSAKVLLNGDI-VVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc-ceEEEEEeeCCCE-EEeccCceEEEEEecccc
Confidence 9999 57888999999999999999975 66666665543 6999999988864 567889999999877543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.8e-17 Score=108.11 Aligned_cols=157 Identities=15% Similarity=0.224 Sum_probs=119.5
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCC---------C-ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRK---------N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
+++|.+++|++|..+|.|.++.+.+ + ..+...++|..++..++|. ..+|++++. |.|+-|..+...+
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhh
Confidence 5899999999999999999998753 1 2233446899999999997 456666664 9999998754211
Q ss_pred ------ccceeeec-----cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEE
Q 029743 72 ------CSDRFVGL-----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 72 ------~~~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
.......- .-..|.++ ..|..+-+++++.|+.++-||+++|+..+++++|.+ -|.+++-......++
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-YvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-YVHSVVGRNANGQIL 172 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-eeeeeeecccCccee
Confidence 01111110 11346677 478777777777999999999999999999999998 599998866666788
Q ss_pred EEeCCCcEEEEeCCCccCCCCCC
Q 029743 140 SISHDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~~~~~ 162 (188)
+|++||++++||+++.+....++
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred ecCCCccEEEEeccccceeEEec
Confidence 99999999999999987655544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-17 Score=112.12 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=114.0
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCceeeeec---ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc--c---c
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--D---C 72 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~---~ 72 (188)
.|.| +.+++++++.|..|++|++++..++..+- +|...|.++.|+++|.+|++++.|.++++|++.... . +
T Consensus 142 k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~ 221 (385)
T KOG1034|consen 142 KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL 221 (385)
T ss_pred hcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh
Confidence 4566 45789999999999999999999988875 799999999999999999999999999999997210 0 0
Q ss_pred c----------------------------------------------------------------------------cee
Q 029743 73 S----------------------------------------------------------------------------DRF 76 (188)
Q Consensus 73 ~----------------------------------------------------------------------------~~~ 76 (188)
. ..+
T Consensus 222 s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~ 301 (385)
T KOG1034|consen 222 SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEF 301 (385)
T ss_pred hcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEe
Confidence 0 000
Q ss_pred eeccCCceeEE-e--ecCCCEEEEecCCCeEEEEecccCeee--eecc-cCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 77 VGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGILPNRII--QPIA-EHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 77 ~~~~~~~v~~~-~--~~~~~~l~~~~~d~~v~~~d~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
.- ....++-+ | .|-++.|+.|...|.|++||++...+. .++. ...+..|...+|+.|+..|+....|++|--|
T Consensus 302 ~~-~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 302 DY-PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred cc-CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 00 11122333 2 456677889999999999999876542 1221 1123479999999999999999999999999
Q ss_pred eCC
Q 029743 151 DLD 153 (188)
Q Consensus 151 d~~ 153 (188)
|.-
T Consensus 381 drv 383 (385)
T KOG1034|consen 381 DRV 383 (385)
T ss_pred Eee
Confidence 853
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=120.67 Aligned_cols=155 Identities=27% Similarity=0.383 Sum_probs=124.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC--------CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc---
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--- 69 (188)
++|.|-...|++++.|+.|.+|+++. -+++.++.+|.++|.|++..++++.+++|+-||+|+.|++...
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 35677778899999999999999932 2567788999999999999999999999999999999966421
Q ss_pred ------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC------------------------------
Q 029743 70 ------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN------------------------------ 112 (188)
Q Consensus 70 ------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~------------------------------ 112 (188)
......+.| |...++.+ +|+....|++++.||++++|+....
T Consensus 380 ~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred ccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 134556788 99999999 6888888999999999999986211
Q ss_pred ---------------------------------------------------------------eeeeecccCCCcceeEE
Q 029743 113 ---------------------------------------------------------------RIIQPIAEHSEYPIESL 129 (188)
Q Consensus 113 ---------------------------------------------------------------~~~~~~~~~~~~~v~~~ 129 (188)
.++....+|.. .++++
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-svtsl 537 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD-SVTSL 537 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc-eecce
Confidence 11111223444 68899
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 130 ALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
++.|+|.+|++++.|+.+++|.+.....
T Consensus 538 ai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 538 AIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eecCCCceEEeecCCceeehhhccchhe
Confidence 9999999999999999999999876553
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=112.58 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=112.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcC---CC-----ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc----
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLR---KN-----TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---- 69 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---- 69 (188)
+.||+|+++++++....|++|.+- .| .....+++|...|..++|+++.+.+++.+.||.+++||.+..
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 689999999999999999999873 23 234567899999999999999999999999999999998632
Q ss_pred --cccccee----eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc-cCCCcceeEEEeeCCCCEEEEE
Q 029743 70 --KDCSDRF----VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 70 --~~~~~~~----~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
...++.. .. ..+....+ .+|+|+.|+.... ..+++|..+.++...++. .|.+ .|.+++|+++|++++++
T Consensus 315 qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKYIATC 391 (420)
T ss_pred CCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcEEeee
Confidence 1122221 11 22233355 6999998887654 369999999888766664 3544 89999999999999988
Q ss_pred eCCCcEEEEe
Q 029743 142 SHDSMLKLWD 151 (188)
Q Consensus 142 ~~d~~i~iwd 151 (188)
+ |..++++.
T Consensus 392 G-dr~vrv~~ 400 (420)
T KOG2096|consen 392 G-DRYVRVIR 400 (420)
T ss_pred c-ceeeeeec
Confidence 7 77788775
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=117.95 Aligned_cols=155 Identities=14% Similarity=0.255 Sum_probs=125.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC-ceeeeeccc-ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
|||+.+.+.||.+=.+|.|-+|++..+ -....+.++ ...|.+++|+ .+..|++.+.+|.|.-||+.+ ......+..
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~-lk~~~~~d~ 108 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT-LKQKYNIDS 108 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc-CceeEEecC
Confidence 588999999999999999999999875 333444443 4579999999 466788889999999999986 466667777
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeee--cccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
..+.++++ .+|.+..++.||.||.+..++...++.... +.... ++|.++.|+|++..+++|+.||.|++||..+.
T Consensus 109 -~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~-sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 109 -NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQK-SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred -CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccccc-ceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence 88899999 699999999999999777777766664432 22232 48999999999999999999999999999987
Q ss_pred cCCC
Q 029743 156 LKGS 159 (188)
Q Consensus 156 ~~~~ 159 (188)
....
T Consensus 187 ~t~~ 190 (691)
T KOG2048|consen 187 QTLH 190 (691)
T ss_pred ceEE
Confidence 6544
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-16 Score=110.89 Aligned_cols=151 Identities=14% Similarity=0.124 Sum_probs=113.1
Q ss_pred CeeecccCeE-EEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+|+++.+ ++++.++.|++||..+++....+..+. .+..++|+|+++.++++ ..++.+++||+.. ...+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~ 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC
Confidence 4689999877 566778999999999888777666443 35678999999877655 5688999999976 344544442
Q ss_pred ccCCceeEE-eecCCCEEEEecCCC-eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEE-eCCCcEEEEeCCCc
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWDLDDI 155 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~-~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~ 155 (188)
...+..+ ++|+|.+++++..++ .+.+||..+++....+... . .+..++|+|++++|+.+ ..++.|++||+++.
T Consensus 114 --~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 114 --GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-Q-RPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred --CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-C-CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 2335666 899999999888764 5677898887766554333 2 46789999999988654 46899999999886
Q ss_pred cC
Q 029743 156 LK 157 (188)
Q Consensus 156 ~~ 157 (188)
..
T Consensus 190 ~~ 191 (300)
T TIGR03866 190 KV 191 (300)
T ss_pred ee
Confidence 54
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=109.73 Aligned_cols=156 Identities=15% Similarity=0.222 Sum_probs=117.3
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.+++-...+++|+.|++|++||.+.......+. ....|.++.. .++.|+.|+.+..+.+||+++-....+.-...-+
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk 177 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK 177 (323)
T ss_pred EeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccce
Confidence 355666789999999999999998755555544 3346777765 5789999999999999999875444433222134
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccC----eeeeecccCCC--------cceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPN----RIIQPIAEHSE--------YPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~----~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
-.++|+ +.|++.-.++++.+|.|.+=.+... +....|+.|.. ++|++|+|+|-...|++|+.||.|.
T Consensus 178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~ 257 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVN 257 (323)
T ss_pred eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEE
Confidence 568888 6888888999999999887666543 23334444431 5899999999999999999999999
Q ss_pred EEeCCCccCCCC
Q 029743 149 LWDLDDILKGSG 160 (188)
Q Consensus 149 iwd~~~~~~~~~ 160 (188)
+||+.+.+....
T Consensus 258 ~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 258 IWDLFNRKRLKQ 269 (323)
T ss_pred EccCcchhhhhh
Confidence 999998765443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=117.69 Aligned_cols=156 Identities=15% Similarity=0.247 Sum_probs=128.9
Q ss_pred eeecccC-eEEEEeCCCcEEEEEcCCCc---------eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC---
Q 029743 2 TFAADAM-KLLGTSGDGTLSVCNLRKNT---------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--- 68 (188)
Q Consensus 2 ~~s~~~~-~l~~~~~d~~i~i~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--- 68 (188)
.|.++.. .+++|+.|..|++|-+..+. .+..+..|...|+++.|+|+|+.|++|+.+|.+.+|....
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence 3555554 89999999999999876421 2335568999999999999999999999999999998751
Q ss_pred ---cc---------cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC
Q 029743 69 ---FK---------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 69 ---~~---------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 135 (188)
.. ...+.+.+ |...+..+ |+|++.++++++.|+.+++||+..|.....+..|.. -+..++|.|-+
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~ 177 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLN 177 (434)
T ss_pred ccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc-ccceeecchhh
Confidence 00 11233456 88888889 899999999999999999999999999999999976 69999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCccCCC
Q 029743 136 KFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
+++++-+.|...+.+.+.......
T Consensus 178 qyv~s~s~dr~~~~~~~~~~~~~~ 201 (434)
T KOG1009|consen 178 QYVASKSSDRHPEGFSAKLKQVIK 201 (434)
T ss_pred hhhhhhccCcccceeeeeeeeeee
Confidence 999999999988888877655433
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=109.23 Aligned_cols=153 Identities=18% Similarity=0.240 Sum_probs=123.8
Q ss_pred eeec--ccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceee
Q 029743 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+||| +|+.+++. .|+++..||+++..+...+. +|...|..+.|+|+- .+|++|+.||.|++||.+..+.+++.+.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 4777 77777775 56999999999877666665 788899999999976 5678999999999999998889999999
Q ss_pred eccCCceeEE-eec-CCCEEEEecCCCeEEEEecccC-----------------------------eeeeecccCCCcce
Q 029743 78 GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN-----------------------------RIIQPIAEHSEYPI 126 (188)
Q Consensus 78 ~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~-----------------------------~~~~~~~~~~~~~v 126 (188)
+ |...++++ |+| ..+++++|+.|..|.+|...+- ..+.++..|.+ .|
T Consensus 256 ~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SV 333 (370)
T KOG1007|consen 256 G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SV 333 (370)
T ss_pred C-CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ce
Confidence 9 99999999 887 4568889999999999976321 12345667766 89
Q ss_pred eEEEeeCCCCE-EEEEeCCCcEEEEeCCCccC
Q 029743 127 ESLALSHDRKF-LGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 127 ~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~ 157 (188)
++++|+.-..+ +++-+.||.+.|=.+....+
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V~r~~k 365 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSVPRFLK 365 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecCChhhh
Confidence 99999987776 47888999998877665443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-17 Score=109.73 Aligned_cols=142 Identities=15% Similarity=0.226 Sum_probs=113.2
Q ss_pred eEEEEeCCCcEEEEEcCCCceee----------eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc--c-e
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQT----------RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS--D-R 75 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~-~ 75 (188)
+|++|..+|.+.+||+.++..+. ....|..+|.++.+.+.-..=++++.+..+..|.++.....+ . .
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 35677789999999999874333 233688899999998765555677777788899886431111 1 1
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
+.- ....+..+ .-||++.+++++.|+.|++|.-++..++..++.|+. .|++++|+|+...++.++.|+.|.+|++
T Consensus 247 ~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 222 23346666 789999999999999999999999999999999986 8999999999999999999999999986
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=118.68 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=124.0
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc-CCce
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS-PNSV 84 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~v 84 (188)
...++++|+..+.|+|||++...+.+.+++|...|+++.++-...+|++++..|.|.+-.+.+ +.....+.. . ...+
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~-~sgqsv 167 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTI-DSGQSV 167 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-Cccccceec-CCCCeE
Confidence 457899999999999999998888888999999999999999999999999999999999876 454555554 3 3445
Q ss_pred eEE-eecCCC-EEEEecCCCeEEEEecccCeeeeec-ccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeCCCccCCC
Q 029743 85 DAL-LKLDED-RVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 85 ~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
+-+ ++|..+ +|.+++.+|.|.+||+....++..+ ..|+ ++...++|+|.. ..|++.+.|..|.+||++......
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs-AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS-APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc-CCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 566 788666 5667889999999999887777665 4564 489999999955 567899999999999999765443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=110.54 Aligned_cols=142 Identities=13% Similarity=0.170 Sum_probs=120.1
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCcccccceeee
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+| +.+.++.++....+-||.-....++..+-+|.+.|+.+.|.++|+.|++|.. +-.|..||++..+.++-.+..
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 46888 5668999999999999998888999999999999999999999999999876 568999999987788877777
Q ss_pred ccCC-ceeEE-e--ecCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 79 LSPN-SVDAL-L--KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 79 ~~~~-~v~~~-~--~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
|.. .-..+ | .|+++.|++|+.+|.|++||++. +..+..+..++. .++.++++|--+++++++..
T Consensus 293 -hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 293 -HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred -hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 655 22233 5 78999999999999999999987 777777777767 79999999998888877644
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=114.95 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=128.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC--CceeeeecccccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCcc-ccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFK-DCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~-~~~~~~ 76 (188)
|.|+|....|++++.|++++||.+.. ...++.+.-...+|.+.+|.|+|. .+++++...-++.||+.+.+ ..+..+
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence 46999999999999999999998864 345555555678999999999998 89999999999999997532 223333
Q ss_pred eeccCCc-eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 77 VGLSPNS-VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 77 ~~~~~~~-v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.+ +... +... .+|++++|+..+..|.|.+....+++.+..+... + .|..++|+.+++.|++++.+|.|.+||++.
T Consensus 299 ~g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-G-~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 299 YG-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-G-VVSDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred CC-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-c-EEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 34 3322 2223 4899999999999999999999999999888766 4 799999999999999999999999999998
Q ss_pred ccCCCCC
Q 029743 155 ILKGSGN 161 (188)
Q Consensus 155 ~~~~~~~ 161 (188)
.......
T Consensus 376 ~~~~~rf 382 (514)
T KOG2055|consen 376 NSCLHRF 382 (514)
T ss_pred cceEEEE
Confidence 8655443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=119.23 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=120.9
Q ss_pred CeeecccCeEEEEeCC-----CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc---c
Q 029743 1 MTFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---C 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~ 72 (188)
++.||+++++|+++.. ..|++|+..+-...+.+++|.-.|+.++|+||+++|++.+.|+++.+|....... .
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence 4678999999999764 4689999988877778999999999999999999999999999999999853211 1
Q ss_pred cceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC--eeeee--cccCCCcceeEEEeeCC-----CCEEEEEe
Q 029743 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQP--IAEHSEYPIESLALSHD-----RKFLGSIS 142 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~--~~~~~--~~~~~~~~v~~~~~~~~-----~~~l~~~~ 142 (188)
....+. |..-|... |+|++.++++++.|.+|++|..... +.+.. ...+.. .|+.+++.|- +..++.|-
T Consensus 611 fa~~k~-HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~-aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 611 FACLKA-HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSL-AVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred hccccc-cceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCC-ceeeEEeeccccccccceEEEEe
Confidence 223556 88888888 8999999999999999999998766 33333 223434 7999998872 22567777
Q ss_pred CCCcEEEEeCC
Q 029743 143 HDSMLKLWDLD 153 (188)
Q Consensus 143 ~d~~i~iwd~~ 153 (188)
..|.|.+|...
T Consensus 689 e~GeI~l~~~~ 699 (764)
T KOG1063|consen 689 EKGEIVLWRRK 699 (764)
T ss_pred cccEEEEEecc
Confidence 88999999966
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-16 Score=115.57 Aligned_cols=157 Identities=14% Similarity=0.176 Sum_probs=123.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc-ceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~ 79 (188)
++|++ +..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+..++.|+.||.+..++...+.-.. +.+..
T Consensus 75 L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r- 152 (691)
T KOG2048|consen 75 LAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR- 152 (691)
T ss_pred EEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc-
Confidence 46774 5678888889999999999999988888888999999999999999999999977777765422111 22333
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-------ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.++.+.++ |+|++..++.|+.||.|++||..++..+... ......-|+++.|-.++ .|++|...|+|.+||
T Consensus 153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWD 231 (691)
T ss_pred ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEc
Confidence 56789999 8999999999999999999999988765521 11112257888887655 788999999999999
Q ss_pred CCCccCCCC
Q 029743 152 LDDILKGSG 160 (188)
Q Consensus 152 ~~~~~~~~~ 160 (188)
...+...+.
T Consensus 232 ~~~gTLiqS 240 (691)
T KOG2048|consen 232 SIFGTLIQS 240 (691)
T ss_pred ccCcchhhh
Confidence 998875543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-16 Score=107.05 Aligned_cols=149 Identities=15% Similarity=0.250 Sum_probs=118.3
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCc---eeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
+.+++.+.+-|.+..|||++.+. ....+.+|...|..++|...+ +.|++.+.||.+++||++. .+....+-. ..
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~-leHSTIIYE-~p 239 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS-LEHSTIIYE-DP 239 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc-cccceEEec-CC
Confidence 56889999999999999999863 355677899999999999865 6788999999999999986 344444332 22
Q ss_pred ---CceeEE-eec-CCCEEEEec-CCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCC-CCEEEEEeCCCcEEEEeCC
Q 029743 82 ---NSVDAL-LKL-DEDRVITGS-ENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHD-RKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 82 ---~~v~~~-~~~-~~~~l~~~~-~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~ 153 (188)
.+...+ +++ |-+++++-. ....|.+.|++. ..++..+++|.. .|+.++|.|. ...|++++.|.++.+||+.
T Consensus 240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecc
Confidence 344555 554 566777655 456799999985 568899999966 8999999995 4689999999999999999
Q ss_pred CccC
Q 029743 154 DILK 157 (188)
Q Consensus 154 ~~~~ 157 (188)
....
T Consensus 319 q~~~ 322 (364)
T KOG0290|consen 319 QMPR 322 (364)
T ss_pred cccc
Confidence 7665
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-17 Score=114.89 Aligned_cols=147 Identities=12% Similarity=0.083 Sum_probs=116.0
Q ss_pred ccCeEEEEeCCCcEEEEEcCCC---cee------------------eeecccccceEEEEEEeCC-CEEEEecCCCeEEE
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKN---TVQ------------------TRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLL 63 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~---~~~------------------~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~ 63 (188)
.|+++|.|+.+..|.|||+.-- .+. ..-.+|+..|.++.|+..- +.|++|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4789999999999999997521 000 0122688889999998744 67899999999999
Q ss_pred EEeCCcccccceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccC-eeeeecccCCCcceeEEEeeCCCC-EEE
Q 029743 64 YSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRK-FLG 139 (188)
Q Consensus 64 ~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 139 (188)
||+.. +.+..++.. |...|.++ |+| ...+|++|+.|++|.+.|+|.. ..-..++.. + .|..++|.|... .++
T Consensus 271 WD~~~-g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-g-~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 271 WDVDT-GKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-G-EVEKVAWDPHSENSFF 346 (463)
T ss_pred EEcCC-CCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-c-ceEEEEecCCCceeEE
Confidence 99987 688888888 99999999 876 6779999999999999999942 222333333 3 689999999765 456
Q ss_pred EEeCCCcEEEEeCCCcc
Q 029743 140 SISHDSMLKLWDLDDIL 156 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~~ 156 (188)
++..||.|+-+|+++..
T Consensus 347 ~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPG 363 (463)
T ss_pred EecCCceEEeeecCCCC
Confidence 67789999999999874
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=109.04 Aligned_cols=144 Identities=18% Similarity=0.288 Sum_probs=110.4
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEE-EEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
++.+++++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||... ++....+.. +.. +.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~-~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS-GPD-PE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC-CCC-cc
Confidence 356888899999999999998888887754 346789999999876 5667889999999975 344444544 433 34
Q ss_pred EE-eecCCCEEEEe-cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC-cEEEEeCCCcc
Q 029743 86 AL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS-MLKLWDLDDIL 156 (188)
Q Consensus 86 ~~-~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~ 156 (188)
.+ ++|+++.++++ ..++.|++||+++++.+..+..+ . .+.+++|+|+++++++++.++ .+.+||.++..
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~-~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-V-EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-C-CcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 45 79999977655 56899999999988877776543 2 468899999999998888764 56778987654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=117.27 Aligned_cols=159 Identities=16% Similarity=0.211 Sum_probs=116.7
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeee--ecccccceEEEEEEeC-CCEEEEecCCCeEEEEEeCCcc--------
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK-------- 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~-------- 70 (188)
.|-|....|++++.|.+++.||++..++... +.+|...|.+++|.|. ...|++|+.||.|.|||++..+
T Consensus 107 ~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~ 186 (720)
T KOG0321|consen 107 KWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD 186 (720)
T ss_pred ccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh
Confidence 4667666789999999999999999887766 7799999999999994 5788899999999999996421
Q ss_pred -----------ccccee-------eeccC----CceeEEeecCCCEEEEecC-CCeEEEEecccCeeee--------ecc
Q 029743 71 -----------DCSDRF-------VGLSP----NSVDALLKLDEDRVITGSE-NGLISLVGILPNRIIQ--------PIA 119 (188)
Q Consensus 71 -----------~~~~~~-------~~~~~----~~v~~~~~~~~~~l~~~~~-d~~v~~~d~~~~~~~~--------~~~ 119 (188)
.+.+.+ .. +. +.|+.++..|...|++++. |+.|+|||++...... .+.
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~ 265 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP 265 (720)
T ss_pred hhhhccccCCCCCCchhhcccccccc-ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCcc
Confidence 000000 01 11 1244557788888998886 9999999998654321 122
Q ss_pred cCC--CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 120 EHS--EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 120 ~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
.+. ...+.++.....|.+|.+.+.|+.|++|++......+..
T Consensus 266 t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~ 309 (720)
T KOG0321|consen 266 THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVA 309 (720)
T ss_pred CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchh
Confidence 221 124677777778899888888999999999987655543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.2e-16 Score=110.80 Aligned_cols=152 Identities=13% Similarity=0.207 Sum_probs=124.7
Q ss_pred eeecccC-eEEEEeCCCcEEEEEcCCCceeee--ecccc-cceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTR--SEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~~~~-~l~~~~~d~~i~i~~~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+|.|+|. .+++++....++.||+.+.+..+. +.++. ..+.....++++++|+..+..|.|.+....+ ++.+..++
T Consensus 264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT-~eli~s~K 342 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT-KELITSFK 342 (514)
T ss_pred eecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh-hhhhheee
Confidence 6899999 888989989999999988755432 22333 3567788899999999999999999999876 67777776
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
..+.+..+ |+.+++.|++.+.+|.|++||++...++..+.....-.-++++.++++.+||+|+..|.|.|||.++-.
T Consensus 343 --ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 343 --IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred --eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 46778888 899999999999999999999999999888865532234567778999999999999999999976543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=116.45 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=113.7
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCce------eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce--ee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTV------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--FV 77 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~ 77 (188)
....|+.+..+|.|.++|...... +.....|...|..+.|.|....|++++.|.++++||+.. ..+... +.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s~l~G~~~~~ 141 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-SRLVGGRLNL 141 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-ceeecceeec
Confidence 356789999999999999865321 244568999999999999667899999999999999986 455555 78
Q ss_pred eccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCe--------------------e-------eeecccCCCcceeE
Q 029743 78 GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR--------------------I-------IQPIAEHSEYPIES 128 (188)
Q Consensus 78 ~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~--------------------~-------~~~~~~~~~~~v~~ 128 (188)
+ |...+.++ |.| +...+++|+.||.|.|||++-.. + +....++.. .|.+
T Consensus 142 G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~-ti~s 219 (720)
T KOG0321|consen 142 G-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN-TIFS 219 (720)
T ss_pred c-cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccC-ceee
Confidence 8 99999999 777 45588999999999999986321 0 011112222 3444
Q ss_pred ---EEeeCCCCEEEEEeC-CCcEEEEeCCCccCC
Q 029743 129 ---LALSHDRKFLGSISH-DSMLKLWDLDDILKG 158 (188)
Q Consensus 129 ---~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~ 158 (188)
+.+..|...|++++. |+.|+|||+++....
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 455567888998886 999999999987643
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-16 Score=108.70 Aligned_cols=148 Identities=13% Similarity=0.148 Sum_probs=125.8
Q ss_pred cCeEEEEeCC--CcEEEEEcCCCceeeeeccc---------ccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCccccc
Q 029743 7 AMKLLGTSGD--GTLSVCNLRKNTVQTRSEFS---------EEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 7 ~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~---------~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~ 73 (188)
...+++|+.. ..+.|||++..+.+..-+.- +-.++++.|-+. ...|++++.-+++++||.+.+.+++
T Consensus 161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV 240 (412)
T KOG3881|consen 161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV 240 (412)
T ss_pred CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence 3456778888 88999999887655543321 123567888886 7899999999999999999888999
Q ss_pred ceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeee-cccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
..+.- ...++.++ ..|.|+++++|...+.+..||++.++.... +.+-.+ .|+++..+|..++|++++-|..|+|+|
T Consensus 241 ~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 241 AQFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred eEecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEee
Confidence 99987 88889999 789999999999999999999999998776 777766 899999999999999999999999999
Q ss_pred CCCcc
Q 029743 152 LDDIL 156 (188)
Q Consensus 152 ~~~~~ 156 (188)
+++..
T Consensus 319 ~ktrk 323 (412)
T KOG3881|consen 319 IKTRK 323 (412)
T ss_pred cccch
Confidence 99854
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-16 Score=112.04 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=120.3
Q ss_pred CeEEEEeC-CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 8 MKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 8 ~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
++++++.. -..|.+|.+........-.--+++|.+++-+|.|.+|+.|+..+.+++|.+.+ +..+..+.. |-..++|
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a-HYQ~ITc 128 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA-HYQSITC 128 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh-hccceeE
Confidence 45555543 35778888865443332223567899999999999999999999999999987 688888888 9999999
Q ss_pred E-eecCCCEEEEecCCCeEEEEecc---------cCeeeeecccCCCcceeEEEeeCC--CCEEEEEeCCCcEEEEeCCC
Q 029743 87 L-LKLDEDRVITGSENGLISLVGIL---------PNRIIQPIAEHSEYPIESLALSHD--RKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~v~~~d~~---------~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~ 154 (188)
+ |+-||.++++|+.||.|.+|.+- +-+++..+..|.- +|+++...+- ..+|++++.|.++++||+..
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-SITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc-eeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 9 99999999999999999999873 3457788888865 8999988764 45899999999999999998
Q ss_pred ccC
Q 029743 155 ILK 157 (188)
Q Consensus 155 ~~~ 157 (188)
+..
T Consensus 208 g~L 210 (476)
T KOG0646|consen 208 GVL 210 (476)
T ss_pred cee
Confidence 753
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.6e-16 Score=105.95 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=122.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC---ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc--cccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~ 75 (188)
.+|++|+..+|.+.....|.||..... +...++..|...|++++|+|..+.|++++.|..-++|....++ .+...
T Consensus 16 hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptlv 95 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV 95 (361)
T ss_pred eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecccee
Confidence 379999999999999999999987654 4667888999999999999999999999999999999984332 22333
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee---eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI---IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
+.. +...++++ |+|.++.+++|+....|.||-....+- .+.+...-...|.++.|+|++-.|++|+.|+..+||.
T Consensus 96 LlR-iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 96 LLR-INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred EEE-eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence 444 77889999 999999999999999999998865431 1122222123799999999999999999999999986
Q ss_pred C
Q 029743 152 L 152 (188)
Q Consensus 152 ~ 152 (188)
.
T Consensus 175 a 175 (361)
T KOG1523|consen 175 A 175 (361)
T ss_pred E
Confidence 4
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-15 Score=110.01 Aligned_cols=144 Identities=18% Similarity=0.221 Sum_probs=118.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++.+|+.+++++++.|+.+++|+ ..+++.... -..++.++.|+|.| .++.|...|...+.|..+ +.+-++.. .
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~~~~-d 446 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTET--QDLVTIHT-D 446 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEeccc--ceeEEEEe-c
Confidence 35678899999999999999999 555555443 45688999999999 999999999999999875 33334444 5
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
..++.++ |+|+|.+|+.|+.|+.|++|-+.. +.....+..+.+.+|+.+.|++|+++|.+.+.|-.|..|.
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 7788999 899999999999999999999864 4444444444446899999999999999999999999993
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.1e-17 Score=126.84 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=120.1
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
+.|++. +++||+|+.+|.|.|||+...+...... ...+.|.+++|+. ....|++++.+|.+.+||++.. +.+-.+
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~l 200 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKL 200 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-Cccccc
Confidence 468885 5599999999999999998755443332 3467899999987 4467888999999999999864 444445
Q ss_pred eeccCC--ceeEE-eecCC-CEEEEecCCC---eEEEEeccc-CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcE
Q 029743 77 VGLSPN--SVDAL-LKLDE-DRVITGSENG---LISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSML 147 (188)
Q Consensus 77 ~~~~~~--~v~~~-~~~~~-~~l~~~~~d~---~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i 147 (188)
.. +.. .+..+ |+|+. ..+++++.|. .|.+||+|. ..+++.+++|.. .|.++.|++.+ .+|++++.|+.|
T Consensus 201 s~-~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 201 SD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred cc-CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCe
Confidence 44 333 34556 89965 4667776554 499999986 457888889976 79999999966 788999999999
Q ss_pred EEEeCCCccCCCCC
Q 029743 148 KLWDLDDILKGSGN 161 (188)
Q Consensus 148 ~iwd~~~~~~~~~~ 161 (188)
.+|+.++++.....
T Consensus 279 i~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 279 ICWNPNTGEVLGEL 292 (1049)
T ss_pred eEecCCCceEeeec
Confidence 99999997654433
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-15 Score=102.29 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=111.4
Q ss_pred ccCeEEEEeCCCcEEEEEcCCC---------ceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcc----
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKN---------TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK---- 70 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~---- 70 (188)
-|+.+|+++.|+++.||.-... ....++......|+.+.|.| -|-.+++++.||.++||+.....
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 4899999999999999985311 22345556778899999999 56789999999999999864220
Q ss_pred --------------------------------------------------------------cccceeeeccCCceeEE-
Q 029743 71 --------------------------------------------------------------DCSDRFVGLSPNSVDAL- 87 (188)
Q Consensus 71 --------------------------------------------------------------~~~~~~~~~~~~~v~~~- 87 (188)
..+..+.+ |+.+|+.+
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d-~~dpI~di~ 230 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD-HTDPIRDIS 230 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC-CCCcceeee
Confidence 00111234 77889999
Q ss_pred eecC----CCEEEEecCCCeEEEEecccC--------------------eeeeecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 88 LKLD----EDRVITGSENGLISLVGILPN--------------------RIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 88 ~~~~----~~~l~~~~~d~~v~~~d~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
|.|+ -.+|++++.|| |+||.+... +.+..+..|.+ +|+.+.|+-.|..|++.+.
T Consensus 231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 7774 34689999999 999998731 13445677865 8999999999999999999
Q ss_pred CCcEEEEeCCC
Q 029743 144 DSMLKLWDLDD 154 (188)
Q Consensus 144 d~~i~iwd~~~ 154 (188)
||.|++|...-
T Consensus 309 DG~VRLWkany 319 (361)
T KOG2445|consen 309 DGCVRLWKANY 319 (361)
T ss_pred Cceeeehhhhh
Confidence 99999997653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=109.34 Aligned_cols=152 Identities=11% Similarity=0.131 Sum_probs=123.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeeccc-ccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.++....+||+++..|.|.|..+.++.....+... ...|.-+.++|..+ +|.+++.+|.|.+||+.. ..+...+...
T Consensus 128 ~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g-~sp~~~~~~~ 206 (673)
T KOG4378|consen 128 DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG-MSPIFHASEA 206 (673)
T ss_pred EecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC-CCcccchhhh
Confidence 45667789999999999999999998776666633 34566899999665 466899999999999975 4444444333
Q ss_pred cCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 80 SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|..+...+ |+| +..+|++.+.|..|.+||++.......+... . +...++|.++|.+|+.|...|.|..||++...
T Consensus 207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-~-Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-H-PLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec-C-CcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 88888888 788 5567888999999999999987777776654 2 78999999999999999999999999999765
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=110.68 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=82.0
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeee
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~ 115 (188)
...|...+|+|||++|++.+.||.++|||+.. ...+..++. .-+...|+ |+|||+|+++|+.|..|.||.+...+.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 34688999999999999999999999999986 455555555 55678888 8999999999999999999999999999
Q ss_pred eecccCCCcceeEEEee
Q 029743 116 QPIAEHSEYPIESLALS 132 (188)
Q Consensus 116 ~~~~~~~~~~v~~~~~~ 132 (188)
..-++|+. .|+.++|.
T Consensus 368 ARGqGHkS-WVs~VaFD 383 (636)
T KOG2394|consen 368 ARGQGHKS-WVSVVAFD 383 (636)
T ss_pred Eecccccc-ceeeEeec
Confidence 98899976 89999998
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=103.28 Aligned_cols=157 Identities=17% Similarity=0.294 Sum_probs=117.8
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeee--cccc-cceEEEEEEeCCCEEEEecC----CCeEEEEEeCCcccccceeee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRS--EFSE-EELTSVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~ 78 (188)
.+..+.+++.||+|++||++.......+ ..++ .+..+++.+-.++.+++|.. +-.+.+||++...+.+..+..
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 4567899999999999999875443333 3444 45677777667788887754 568999999987665666655
Q ss_pred ccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCe----eeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEe
Q 029743 79 LSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWD 151 (188)
Q Consensus 79 ~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd 151 (188)
.|...|+++ |+| +.++|++|+.||.|-|||+.... .+.++. + +..|..+.|..++ +.+.+-+......+|+
T Consensus 163 SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI~~igw~~~~ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 163 SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSIHLIGWLSKKYKRIMCLTHMETFAIYE 240 (376)
T ss_pred hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-c-cceeeeeeeecCCcceEEEEEccCceeEEE
Confidence 599999999 988 66799999999999999987532 333333 3 3269999999876 4577778899999999
Q ss_pred CCCccCCCCCCCc
Q 029743 152 LDDILKGSGNNIS 164 (188)
Q Consensus 152 ~~~~~~~~~~~~~ 164 (188)
++.+......+.+
T Consensus 241 le~~~~~~~~~~~ 253 (376)
T KOG1188|consen 241 LEDGSEETWLENP 253 (376)
T ss_pred ccCCChhhcccCc
Confidence 9988755444444
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-15 Score=103.51 Aligned_cols=111 Identities=15% Similarity=0.211 Sum_probs=93.7
Q ss_pred eEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec
Q 029743 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (188)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~ 118 (188)
..++.|++.|.+|++|+.||.|.+||+.+ ....+.+.. |..+|.++ ||++|+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsa-H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSA-HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhc-cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 78999999999999999999999999987 467778888 99999999 8999999999999999999999999999998
Q ss_pred ccCCCcceeEEEeeCCCC-EEEEEeCCCcEEEEeCCC
Q 029743 119 AEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 119 ~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 154 (188)
.-.+ +|+.+.|+|..+ ..++.-.+..-.+-++..
T Consensus 104 rf~s--pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 104 RFDS--PVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred EccC--ccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 8763 899999999543 333333444455555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=116.08 Aligned_cols=145 Identities=12% Similarity=0.190 Sum_probs=118.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|-|||..|+.+.. ..+.+||...|..++.+++|...|.+++|+.+|+.+++|+.|..|.+|.-... ..++-.|
T Consensus 18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE----G~LkYSH 92 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE----GILKYSH 92 (1081)
T ss_pred eEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc----ceeeecc
Confidence 578999999888654 67999999999999999999999999999999999999999999999986532 2233228
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
...+.|+ |+|-...|++++... .-+|........ ..+. ...+.+.+|..||++++.|-.+|+|.+-+-..
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~-K~ks--s~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVS-KHKS--SSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhh-ccccChhhhhHH-hhhh--heeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 8999999 999999999888653 568886544332 2222 23688999999999999999999999986543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=106.22 Aligned_cols=154 Identities=26% Similarity=0.400 Sum_probs=124.9
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCceeeeecccccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCcccccc-eee
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSD-RFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~-~~~ 77 (188)
+.|+|+++.++.++. ++.+++|++..+..+..+.+|...+.+++|+|++. .+++++.|+.+++||... +.... .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~ 239 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLS 239 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecC
Confidence 468999998888885 99999999998888888888999999999999988 555559999999998874 45555 466
Q ss_pred eccCCceeEEeecCCCEEEEecCCCeEEEEecccCee-eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+ |.......|+|++.++++++.++.+++|+++.... +..+..|.. .+.++.|.|++..+++++.|+.+.+|++.+..
T Consensus 240 ~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 240 G-HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred C-CCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 6 66554114889988899999999999999986654 444455644 89999999988888888888889999888765
Q ss_pred C
Q 029743 157 K 157 (188)
Q Consensus 157 ~ 157 (188)
.
T Consensus 318 ~ 318 (466)
T COG2319 318 L 318 (466)
T ss_pred e
Confidence 3
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-16 Score=113.85 Aligned_cols=147 Identities=13% Similarity=0.196 Sum_probs=126.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.|+|...+|++++. ..|+|||+.....++.+......|..++.+|.|..|+.++.|+.+..+|++....+.+++.- |.
T Consensus 573 ~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H~ 650 (733)
T KOG0650|consen 573 KFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-HE 650 (733)
T ss_pred EecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-hh
Confidence 58888888888776 88999999988877777766778999999999999999999999999999876678888888 99
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecc------cC---eeeeecccCCC---cceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGIL------PN---RIIQPIAEHSE---YPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~------~~---~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
..++.+ |++.-.++++|+.||++.|+.-. .. -++..+.+|.. ..|....|||...+|.+++.||+|+
T Consensus 651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 651 KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEE
Confidence 999999 89999999999999999988532 11 25667788753 1377888999999999999999999
Q ss_pred EE
Q 029743 149 LW 150 (188)
Q Consensus 149 iw 150 (188)
+|
T Consensus 731 lf 732 (733)
T KOG0650|consen 731 LF 732 (733)
T ss_pred ee
Confidence 98
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.9e-16 Score=120.44 Aligned_cols=155 Identities=10% Similarity=0.131 Sum_probs=127.4
Q ss_pred eeecc-cCeEEEEeCCCcEEEEEcCCCceeeeeccccc--ceEEEEEEeCC-CEEEEecCCC---eEEEEEeCCcccccc
Q 029743 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE--ELTSVVLMKNG-RKVVCGSQSG---TVLLYSWGYFKDCSD 74 (188)
Q Consensus 2 ~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~~~~~d~---~i~~~d~~~~~~~~~ 74 (188)
+|+.. ...|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+. ..+++++.|. .|.+||++.....++
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence 34442 35578889999999999998877666654443 47899999976 5666666653 699999998788999
Q ss_pred eeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCCcEEEEe
Q 029743 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWD 151 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd 151 (188)
.+++ |...+.++ |.+ |..++++++.|+.|.+|+..+++.+..+..... .+..+.|+|... .++.++.||.|.||.
T Consensus 248 ~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 248 ILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred hhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeee
Confidence 9999 99999999 866 558999999999999999999999999987645 899999999766 778888999999999
Q ss_pred CCCccCC
Q 029743 152 LDDILKG 158 (188)
Q Consensus 152 ~~~~~~~ 158 (188)
+......
T Consensus 326 l~~~~~~ 332 (1049)
T KOG0307|consen 326 LQGTDTD 332 (1049)
T ss_pred eecCCcc
Confidence 9876643
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-15 Score=116.03 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=130.7
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 82 (188)
++++.-++++|+.-+.|.+|.....+....+.+|.+.+..+.|+.+|+++++.+.|.++++|++++.........+ |..
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-Hsa 219 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSA 219 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccc
Confidence 4566778899999999999998754444467899999999999999999999999999999999875444446677 888
Q ss_pred ceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
.+..+ ++|+ ++++++.|-+.++|+.. +..+..+..|.+..++.++..++...+++++.|+.+++|++.....+..
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~ 295 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGH 295 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccc
Confidence 88888 7887 99999999999999754 5666688888877899999999999999999999999999987665443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=109.25 Aligned_cols=156 Identities=15% Similarity=0.230 Sum_probs=127.7
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecc--------------------------------------cccceEEE
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--------------------------------------SEEELTSV 43 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--------------------------------------~~~~v~~~ 43 (188)
.++.+|+.|+.|+.-|.|..+|..++++...+.. ....|..+
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rL 215 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARL 215 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhh
Confidence 5677999999999999999999887765443210 12345566
Q ss_pred EEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC
Q 029743 44 VLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (188)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~ 122 (188)
.|-|.--+|++++..|.++.-|+.. +..+..+.. ..+.+..+ -+|-...+-+|..+|+|.+|.....+++..+-.|.
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~-GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVST-GKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeech-hhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence 6777777888999999999999987 577777765 66677777 48988899999999999999999999998998897
Q ss_pred CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 123 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+ +|.++++.++|+++++++.|..++|||+++......
T Consensus 294 g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 294 G-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred C-CcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence 7 999999999999999999999999999998765443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-14 Score=93.62 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=113.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
-..|..+-+++++.|+.++-||+++|+..+.+++|.+.+.++.-......+++|+.||++++||.++ +++++.+.. .+
T Consensus 121 ~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~-yk 198 (325)
T KOG0649|consen 121 WLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEP-YK 198 (325)
T ss_pred EeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEecc-cc
Confidence 3567777788888999999999999999999999999999999866667889999999999999987 466666543 22
Q ss_pred C----------ceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 82 N----------SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 82 ~----------~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
. .|.++ .-+...+++|+. ..+.+|++++.++...+.-. . ++..+.|.. ..+++++..+.|.-|.
T Consensus 199 ~~~~lRp~~g~wigal-a~~edWlvCGgG-p~lslwhLrsse~t~vfpip-a-~v~~v~F~~--d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGAL-AVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIP-A-RVHLVDFVD--DCVLIGGEGNHVQSYT 272 (325)
T ss_pred ChhhcCcccCceeEEE-eccCceEEecCC-CceeEEeccCCCceEEEecc-c-ceeEeeeec--ceEEEeccccceeeee
Confidence 1 12233 334456666654 45889999998888777665 3 688888864 4577788888899998
Q ss_pred CCCcc
Q 029743 152 LDDIL 156 (188)
Q Consensus 152 ~~~~~ 156 (188)
+....
T Consensus 273 l~Gvl 277 (325)
T KOG0649|consen 273 LNGVL 277 (325)
T ss_pred eccEE
Confidence 87643
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=110.17 Aligned_cols=153 Identities=18% Similarity=0.237 Sum_probs=119.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCC---------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGY--------- 68 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~--------- 68 (188)
|.|+.+|.+|++|+.|-.+.|||.-..+++..+. +|...|.++.|-| +.+.+++|..|..|+++|+..
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~ 135 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG 135 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC
Confidence 5799999999999999999999998777777665 8999999999999 557889999999999999973
Q ss_pred cccccceeeeccCCceeEEe-ecCC-CEEEEecCCCeEEEEecccCeeee----------ecccCCCcceeEEEeeCCC-
Q 029743 69 FKDCSDRFVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQ----------PIAEHSEYPIESLALSHDR- 135 (188)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~~-~~~~-~~l~~~~~d~~v~~~d~~~~~~~~----------~~~~~~~~~v~~~~~~~~~- 135 (188)
.......+.. |...|..+. .|++ ..+.+++.||+|+.||++...... .+...-- ...++.++|..
T Consensus 136 ~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li-elk~ltisp~rp 213 (758)
T KOG1310|consen 136 MEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI-ELKCLTISPSRP 213 (758)
T ss_pred ccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh-eeeeeeecCCCC
Confidence 1234455666 777788884 6776 688999999999999998632111 1111111 35688999965
Q ss_pred CEEEEEeCCCcEEEEeCCCc
Q 029743 136 KFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~ 155 (188)
.+|++|+.|-..++||.+..
T Consensus 214 ~~laVGgsdpfarLYD~Rr~ 233 (758)
T KOG1310|consen 214 YYLAVGGSDPFARLYDRRRV 233 (758)
T ss_pred ceEEecCCCchhhhhhhhhh
Confidence 46789999999999996543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-14 Score=106.87 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=100.2
Q ss_pred CeeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec-CCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~ 76 (188)
++|||||+.|+.++.+ ..|++||+.+++.... .........++|+|||+.|+.+. .++.+.||.++........+
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL 287 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence 4799999999987654 4699999988754322 21222345789999999888764 67776666543323444556
Q ss_pred eeccCCceeEE-eecCCCEEEEec-CCCeEEEEecccC-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.. +...+... |+|+|+.++..+ .++...||++... .....+ .+. . ..+.|+|+|++|+..+.++ +.+||+.
T Consensus 288 t~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~--~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~ 361 (429)
T PRK01742 288 TS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR--G-YSAQISADGKTLVMINGDN-VVKQDLT 361 (429)
T ss_pred cc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC--C-CCccCCCCCCEEEEEcCCC-EEEEECC
Confidence 65 55556666 899999877554 5677888876532 222223 332 2 4578999999998877654 6669988
Q ss_pred CccC
Q 029743 154 DILK 157 (188)
Q Consensus 154 ~~~~ 157 (188)
++..
T Consensus 362 ~g~~ 365 (429)
T PRK01742 362 SGST 365 (429)
T ss_pred CCCe
Confidence 7643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-13 Score=95.98 Aligned_cols=153 Identities=13% Similarity=0.086 Sum_probs=111.2
Q ss_pred eeecc--cCeEEEEe--CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCe-EEEEEeCCccccccee
Q 029743 2 TFAAD--AMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRF 76 (188)
Q Consensus 2 ~~s~~--~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~ 76 (188)
++||+ +.+|+.=+ ..|.|++||..+-+....+..|.+++.+++|+++|.+|++++..|+ |+++.+.. ++.+..+
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eF 212 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEF 212 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeee
Confidence 45554 44666543 2589999999999999999999999999999999999999999996 78999976 5666666
Q ss_pred ee-ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe------e---------------------e----------ee
Q 029743 77 VG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR------I---------------------I----------QP 117 (188)
Q Consensus 77 ~~-~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~------~---------------------~----------~~ 117 (188)
+. .....+.++ |+|++++|++.+..++|++|.+.... + + ..
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt 292 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFAT 292 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeE
Confidence 53 122346777 89999999999999999999885311 0 0 00
Q ss_pred cccCCCcceeEEEee--CCCCEEEEEeCCCcEEEEeCCCc
Q 029743 118 IAEHSEYPIESLALS--HDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 118 ~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
........-..+.+. +..+++..++.||.++.|.+.-.
T Consensus 293 ~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 293 AKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred EEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 000101011223333 46778889999999999988764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-13 Score=99.78 Aligned_cols=151 Identities=11% Similarity=0.130 Sum_probs=103.6
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCC-Cce--eeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCccccc--
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRK-NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCS-- 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~-- 73 (188)
|+++|++++|++++ .++.|.+|++.. +.. ..... .......++++|+++.+++++. ++.|.+|+++..+...
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 47899999987765 478899999863 332 22222 2345678999999998888764 7899999997433222
Q ss_pred -ceeeeccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCeeee-----ecccCCCcceeEEEeeCCCCEEEEEeC-C
Q 029743 74 -DRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQ-----PIAEHSEYPIESLALSHDRKFLGSISH-D 144 (188)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 144 (188)
..+.+ ......+ ++|+++++++++ .++.|.+||+.+...+. ......+.....++|+|++++++++.. +
T Consensus 119 ~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 119 IQIIEG--LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred eeeccC--CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC
Confidence 22222 2234455 899999886655 56899999997633221 111111224678999999999987775 8
Q ss_pred CcEEEEeCCC
Q 029743 145 SMLKLWDLDD 154 (188)
Q Consensus 145 ~~i~iwd~~~ 154 (188)
+.|.+|+++.
T Consensus 197 ~~v~v~~~~~ 206 (330)
T PRK11028 197 SSVDVWQLKD 206 (330)
T ss_pred CEEEEEEEeC
Confidence 9999999973
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-13 Score=100.02 Aligned_cols=149 Identities=17% Similarity=0.156 Sum_probs=119.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+.|+|.| .+|.|...|...+.|.++...+..-.. ..++++++|+|+|.+|+.|+.|+.|++|.+...+........-+
T Consensus 413 ~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred eeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec
Confidence 3689999 999999999999999998666554444 88999999999999999999999999999987666655543315
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccC-----------------------------------------------
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPN----------------------------------------------- 112 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~----------------------------------------------- 112 (188)
..+++.+ |++|++++.+-+.|..|..|....-
T Consensus 491 gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gd 570 (626)
T KOG2106|consen 491 GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGD 570 (626)
T ss_pred CceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccc
Confidence 5789999 9999999999999999988853110
Q ss_pred ----------------eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 113 ----------------RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 113 ----------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.+...+.+|+. .|.+++|..+...|++.+.|..|..|++
T Consensus 571 d~g~v~lf~yPc~s~rA~~he~~ghs~-~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 571 DFGKVHLFSYPCSSPRAPSHEYGGHSS-HVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCceEEEEccccCCCcccceeeccccc-eeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 01122345654 7999999988888888889999999986
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=102.84 Aligned_cols=154 Identities=17% Similarity=0.100 Sum_probs=102.4
Q ss_pred CeeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
.+|||||+.|+..+.. ..|++||+.+++... +......+..+.|+|||+.|+ +.+.++...+|.++........+
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 279 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL 279 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC
Confidence 3699999999887643 459999999886543 333345567899999998876 56778877777665333444555
Q ss_pred eeccCCceeEE-eecCCCEEEEecC-CCeEEEEec--ccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC---cEEE
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGI--LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLKL 149 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~-d~~v~~~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i 149 (188)
.. +....... |+|||+.++..+. ++...+|.+ .++.... +..... ......|+|+|++|+..+.++ .|.+
T Consensus 280 t~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~-~~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 280 TQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGS-YNTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred CC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCC-CcCceEECCCCCEEEEEEccCCcEEEEE
Confidence 54 44444445 8999998876654 455555554 4444322 222212 344678999999998776554 6999
Q ss_pred EeCCCccCC
Q 029743 150 WDLDDILKG 158 (188)
Q Consensus 150 wd~~~~~~~ 158 (188)
||+.+....
T Consensus 357 ~d~~~g~~~ 365 (427)
T PRK02889 357 QDLATGQVT 365 (427)
T ss_pred EECCCCCeE
Confidence 999876543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-14 Score=105.35 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=101.9
Q ss_pred CeeecccCeEEEEe-CCCcEEEE--EcCCCceeeeecccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVC--NLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~ 76 (188)
++|+|||+.|+.+. .++.+.|| |+.++.. ..+..+...+..+.|+|+|+.|+.. ..++...+|+++..+.....+
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 37999999988765 57765554 6665554 4455566778899999999977654 457888899886533333333
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
. +.. ... ++|+|++++..+.++ +.+||+.+++........ ....+.|+|+|++|+.++.++.+.+|++.
T Consensus 332 -~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 332 -G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3 333 334 899999998887765 556999887754332222 24567899999999999989888888764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-13 Score=100.25 Aligned_cols=150 Identities=26% Similarity=0.439 Sum_probs=123.1
Q ss_pred ecccC-eEEEEeC-CCcEEEEEcCC-CceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCcccccceeeec
Q 029743 4 AADAM-KLLGTSG-DGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 4 s~~~~-~l~~~~~-d~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
++++. .++..+. ++.+.+|+... ......+..|...|..++|+|+++.++.++. ++.+++|++.. ...+..+.+
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 196 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAG- 196 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEeecc-
Confidence 56666 4444444 89999999988 6777788889999999999999998888886 99999999975 567777888
Q ss_pred cCCceeEE-eecCCC-EEEEecCCCeEEEEecccCeeee-ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 80 SPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|...+.++ ++|++. .+++++.|+.|++||...+.... .+..|.. .. ...|++++..+++++.|+.+++|++....
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 88999999 789988 55555899999999988777777 6777755 33 33799999888899999999999998665
Q ss_pred C
Q 029743 157 K 157 (188)
Q Consensus 157 ~ 157 (188)
.
T Consensus 275 ~ 275 (466)
T COG2319 275 S 275 (466)
T ss_pred c
Confidence 4
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-14 Score=104.14 Aligned_cols=150 Identities=13% Similarity=0.242 Sum_probs=109.1
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeec----ccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCc----------
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSE----FSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYF---------- 69 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~---------- 69 (188)
|.+--|+.|-..|.|.+.|....+..+.+. -....|+++.|-|.+ ..+..+-.+|.+++||....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 345557777777888888866532222111 123679999999954 56667778899999976321
Q ss_pred -----------------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEe
Q 029743 70 -----------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (188)
Q Consensus 70 -----------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 131 (188)
..++..+.. ....+... |+|||++|++.+.||.++|||..+.+.+..++.--+ ...|++|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~-~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-GLLCvcW 340 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHI-GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-GLLCVCW 340 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEe-ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-ceEEEEE
Confidence 011112222 23455666 799999999999999999999998887766665545 6899999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 132 SHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+|||++|++|++|..|.||.+...+
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccce
Confidence 9999999999999999999987654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-13 Score=92.52 Aligned_cols=147 Identities=17% Similarity=0.224 Sum_probs=106.3
Q ss_pred eEEEEeCCCcEEEEEcC-CCceeeeecccc--cceEEEEEEeCCCEEEE-ecCCCeEEEEEeCCccc-ccceeeeccCCc
Q 029743 9 KLLGTSGDGTLSVCNLR-KNTVQTRSEFSE--EELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKD-CSDRFVGLSPNS 83 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~ 83 (188)
.+++. ..+.|+||... +.+.++.+.... ..+.+++-..+...|+. |-.-|+|++-|+..... .-..+.. |...
T Consensus 106 riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~s~ 183 (346)
T KOG2111|consen 106 RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA-HDSD 183 (346)
T ss_pred eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc-ccCc
Confidence 34443 34788999887 345555554222 22223222223344443 44568999999975322 2356677 9999
Q ss_pred eeEE-eecCCCEEEEecCCCe-EEEEecccCeeeeecccCC-CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 84 VDAL-LKLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|.|+ .+.+|..+|+++..|+ |+|||..+|..+..++... .+.|++++|+|+..+|++++..|+|+||.++....
T Consensus 184 Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 184 IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 9999 6999999999999987 8999999999998885432 34799999999999999999999999999987543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-14 Score=105.49 Aligned_cols=148 Identities=18% Similarity=0.234 Sum_probs=120.7
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
...++.++.||.+.|.+ +.++..+.+..|.+.+.+-.|+|+|.-|++++.||.|++|.-. +....++.. ...+|+|
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q-~~~~v~c 150 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQ-NEESIRC 150 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhh-cCceeEE
Confidence 35688889999999988 5677778888999999999999999999999999999999853 444455555 7789999
Q ss_pred E-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+ |.|+..-++.+.. +.+.+=.+.....+...++|.+ -|.++.|++....+++|++|-..++||-........
T Consensus 151 ~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S 223 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS 223 (737)
T ss_pred EEECCCCCceEEecC-CeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccCcccccC
Confidence 9 8887776555443 3466777777777778899965 899999999999999999999999999876654433
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=108.36 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=103.3
Q ss_pred eecccccceEEEEEEeCCCEEEEecCCC-----eEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEE
Q 029743 32 RSEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLIS 105 (188)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~ 105 (188)
.+.+|...|.+++.+|+++.+++++... .|++|+..+. ...+.+.+ |.-.|+.+ |+|||++|++.+.|.++.
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~-HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEG-HSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecc-cceEEEEEEECCCCcEEEEeecCceEE
Confidence 4568999999999999999999988753 6999998764 55567888 99999999 999999999999999999
Q ss_pred EEecccCe----eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 106 LVGILPNR----IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 106 ~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
+|...... .....+.|.. -|++..|+|++.++++++.|.+|++|.....
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtR-IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTR-IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eeeeecccchhhhhccccccce-EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99975432 1223567865 8999999999999999999999999998876
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-15 Score=115.28 Aligned_cols=154 Identities=12% Similarity=0.174 Sum_probs=126.2
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.|...|.++++|+.|..++||...++.++..+.+|.+.++.++.+.+..++++++.|..|++|.+.. +.++..+.+ |+
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrg-ht 274 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRG-HT 274 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHhc-cc
Confidence 4677899999999999999999999999999999999999999999999999999999999999986 688999999 99
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecc--------------------------------------------------
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGIL-------------------------------------------------- 110 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~-------------------------------------------------- 110 (188)
+.|+++ |+|-. +.+.||++++||.+
T Consensus 275 gavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~ 350 (1113)
T KOG0644|consen 275 GAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW 350 (1113)
T ss_pred cceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh
Confidence 999999 88753 56677888888753
Q ss_pred ---------------------------------cCeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeCCCcc
Q 029743 111 ---------------------------------PNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 111 ---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+|.....+.+|.+ .++.+.++|-. +...+++.||...|||+..+.
T Consensus 351 ~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 351 RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 1111222234555 67888999844 455688999999999999887
Q ss_pred CCCCCC
Q 029743 157 KGSGNN 162 (188)
Q Consensus 157 ~~~~~~ 162 (188)
+.....
T Consensus 430 pik~y~ 435 (1113)
T KOG0644|consen 430 PIKHYF 435 (1113)
T ss_pred cceeee
Confidence 665543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.5e-14 Score=96.02 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=120.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC---ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS---- 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~---- 73 (188)
++|+|..+.|++++.|..-++|....+ ++...+..++..++++.|+|.++.|++|+....|.+|-++.. +--
T Consensus 61 vdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E-NdWWVsK 139 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE-NDWWVSK 139 (361)
T ss_pred EeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc-cceehhh
Confidence 579999999999999999999998443 344455568899999999999999999999999999988642 211
Q ss_pred ceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecc-----c-------------CeeeeecccCCCcceeEEEeeCC
Q 029743 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-----P-------------NRIIQPIAEHSEYPIESLALSHD 134 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~-----~-------------~~~~~~~~~~~~~~v~~~~~~~~ 134 (188)
.+-+. +...|.++ |+|++-+|++|+.|+..+++..- . |..+.++... ++.+..+.|+|.
T Consensus 140 hikkP-irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~s 217 (361)
T KOG1523|consen 140 HIKKP-IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSPS 217 (361)
T ss_pred hhCCc-cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCCC
Confidence 11223 56678999 89999999999999999998742 1 1123333222 347999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCcc
Q 029743 135 RKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|..|+-.+.|..+.+-|.....
T Consensus 218 G~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCEeeEecCCCceEEeecCCCc
Confidence 9999999999999999887664
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-13 Score=97.67 Aligned_cols=151 Identities=11% Similarity=0.184 Sum_probs=101.7
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCCCceee-----eec-ccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCcc--
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQT-----RSE-FSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFK-- 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~-----~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~-- 70 (188)
++++|+++++++++ .++.|.+|++.....+. ... ........++|+|++++++++.. ++.|.+|+++...
T Consensus 131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 36899999987665 46999999997632221 011 12344678999999999988776 8899999997321
Q ss_pred -cccceeeecc------CCceeEE-eecCCCEEEEecC-CCeEEEEecccCe----eeeecccCCCcceeEEEeeCCCCE
Q 029743 71 -DCSDRFVGLS------PNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 71 -~~~~~~~~~~------~~~v~~~-~~~~~~~l~~~~~-d~~v~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 137 (188)
..++.+.. . ......+ ++|++++++++.. ++.|.+|++.... .+..+... . ....+.++|+|++
T Consensus 211 ~~~~~~~~~-~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~-~p~~~~~~~dg~~ 287 (330)
T PRK11028 211 IECVQTLDM-MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-T-QPRGFNIDHSGKY 287 (330)
T ss_pred EEEEEEEec-CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-c-cCCceEECCCCCE
Confidence 11222211 1 1112235 7999999998864 7899999986533 22222222 1 3568999999999
Q ss_pred EEEEeC-CCcEEEEeCCC
Q 029743 138 LGSISH-DSMLKLWDLDD 154 (188)
Q Consensus 138 l~~~~~-d~~i~iwd~~~ 154 (188)
|+++.. +++|.+|+++.
T Consensus 288 l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 288 LIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEEccCCcEEEEEEcC
Confidence 987774 89999998863
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=104.81 Aligned_cols=145 Identities=14% Similarity=0.180 Sum_probs=123.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|.|-|..-+|++++..|.++--|+..|+.+..+..-.+.+..++-+|-.-.+-+|..+|+|.+|.... .+++..+.. |
T Consensus 215 LeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLc-H 292 (545)
T KOG1272|consen 215 LEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILC-H 292 (545)
T ss_pred hcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHh-c
Confidence 45778777888999999999999999999988887788899999999888999999999999999876 577777777 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.++|.++ +.++|+|+++.+.|..++|||++....+.++... - +...+++|..| +++.+....|.||.
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~-~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H-PASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C-Ccccccccccc--ceeeecCCeeeeeh
Confidence 9999999 7999999999999999999999988877776653 2 67889998665 44455666789994
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=104.64 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=116.0
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCce--eeee----cccccceEEEEEEeCCC--EEEEecCCCeEEEEEeCCcccc
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTV--QTRS----EFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~~--~~~~----~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
.|+| +.++++.|..+|.|.+||+..+.. ...+ ..|..+++.+.|..+.. -+++++.||.|..|+++.-..+
T Consensus 249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred EeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccc
Confidence 5677 577888999999999999987644 2221 26889999999987554 4999999999999988632100
Q ss_pred --------------------------------------------------------------cceeeeccCCceeEE-ee
Q 029743 73 --------------------------------------------------------------SDRFVGLSPNSVDAL-LK 89 (188)
Q Consensus 73 --------------------------------------------------------------~~~~~~~~~~~v~~~-~~ 89 (188)
...+.. |.++++++ ++
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~-h~g~v~~v~~n 407 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT-HIGPVYAVSRN 407 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc-cCcceEeeecC
Confidence 111122 55667777 67
Q ss_pred cCCCEEEEecCCCeEEEEecc-cCeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCCcEEEEeCCCccCCCCCCC
Q 029743 90 LDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDDILKGSGNNI 163 (188)
Q Consensus 90 ~~~~~l~~~~~d~~v~~~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~ 163 (188)
|=+..++..+.|-+|+||... ...++..+..+.. .|++++|+|... .++++..||.|.+||+......+...+
T Consensus 408 PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~ 482 (555)
T KOG1587|consen 408 PFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ 482 (555)
T ss_pred CCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc
Confidence 755544444448889999877 6677777777755 699999999775 456777899999999998776665543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.9e-14 Score=102.85 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=93.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.|+|||.-|++++.||.|++|. ++|-...++-....+|.|++|.|+.+.++.+.. +.+.+=.+.. ...+-.++. |.
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~-n~k~i~WkA-HD 186 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAA-NSKIIRWRA-HD 186 (737)
T ss_pred ccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccc-ccceeEEec-cC
Confidence 5899999999999999999999 445444444445678999999998877666543 3566666654 344556777 99
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCC
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD 134 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 134 (188)
+-+.++ |++...++++|+.|-..++||-. |..+..-..| +++|++++|+|+
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~-ey~ITSva~npd 238 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE-EYAITSVAFNPE 238 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChh-ccceeeeeeccc
Confidence 999999 99999999999999999999964 4444443333 224444444444
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.9e-14 Score=99.64 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=100.1
Q ss_pred ccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCcc--------cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEE
Q 029743 37 EEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFK--------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (188)
Q Consensus 37 ~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~--------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~ 106 (188)
..++.++.|.++.. .+++|+.|..|++|.+.... ..+..+.. |...+.++ |+|+|.+|++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~-H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSR-HTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccC-CcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 35789999998776 99999999999999985321 12334566 89999999 8999999999999999999
Q ss_pred Eecc--------c--------CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 107 VGIL--------P--------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 107 ~d~~--------~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
|-.. + ......+.+|.. .|+.++|+|++.++++++.|+.+++||+..+.....
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~ 160 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAI 160 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCCceeeeeeccceEEEEEeccceeEee
Confidence 9765 2 123445667766 799999999999999999999999999998876543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=105.43 Aligned_cols=126 Identities=13% Similarity=0.183 Sum_probs=103.3
Q ss_pred eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eec--CCCEEEEecCCCeEEE
Q 029743 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL--DEDRVITGSENGLISL 106 (188)
Q Consensus 30 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~v~~ 106 (188)
.+.+.+|.+-|.+++|+.+|.+|++|+.|-.+.|||.-..+.....-++ |...|.++ |-| +.+.+++|..|..|++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg-HtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG-HTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc-cccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 3567899999999999999999999999999999998643333333467 99999999 855 5678999999999999
Q ss_pred Eeccc----------CeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeCCCccC
Q 029743 107 VGILP----------NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 107 ~d~~~----------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+|+.. ......+..|.. .|..++-.|++ ..+.++++||+|+-+|++....
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred EecccccccccccCccchhhhhhhhhh-hhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 99974 234555666766 79999999998 5678999999999999997543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-13 Score=99.67 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=100.8
Q ss_pred CeeecccCeEEEE-eCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~-~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~ 76 (188)
++|||||+.|+.. +.++ .|++||+++++.... ..+...+....|+|+|+.|+..+. ++...+|.++..+.....+
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe
Confidence 3699999998865 3344 588999988776543 334456788999999998876655 3445555443222333444
Q ss_pred eeccCCceeEE-eecCCCEEEEecCC---CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCc---EEE
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM---LKL 149 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d---~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---i~i 149 (188)
.. ........ ++|+|++++..+.+ ..|.+||+.++... .+... . ......|+|||++|+.++.++. +.+
T Consensus 327 t~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~-~~~~p~~SpDG~~i~~~s~~~~~~~l~~ 402 (429)
T PRK03629 327 TW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-F-LDETPSIAPNGTMVIYSSSQGMGSVLNL 402 (429)
T ss_pred ec-CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-C-CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 43 33344445 79999998776543 35888999877643 33322 1 3456789999999998887754 677
Q ss_pred EeCCCccC
Q 029743 150 WDLDDILK 157 (188)
Q Consensus 150 wd~~~~~~ 157 (188)
+++.....
T Consensus 403 ~~~~G~~~ 410 (429)
T PRK03629 403 VSTDGRFK 410 (429)
T ss_pred EECCCCCe
Confidence 77754433
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-13 Score=99.85 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=103.0
Q ss_pred eeecccCeEEEEeC---CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCe--EEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGT--VLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~~~d~~~~~~~~~~ 75 (188)
+|||||+.|+..+. +..|++||+.+++.. .+..+...+....|+|+|+.|+ +.+.++. |.+||+.. .....
T Consensus 208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~ 284 (435)
T PRK05137 208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--GTTTR 284 (435)
T ss_pred EECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC--CceEE
Confidence 68999999988764 468999999887653 3444566778899999998775 5555554 66667754 33445
Q ss_pred eeeccCCceeEE-eecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC---CcEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SMLK 148 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~ 148 (188)
+.. +....... |+|+|+.++..+. ++ .|+++|+.++... .+..+.. .+....|+|+|+.|+..+.+ ..|.
T Consensus 285 Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~-~~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 285 LTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGG-RYSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred ccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCC-cccCeEECCCCCEEEEEEcCCCceEEE
Confidence 555 55445555 8999998887663 33 5888888765543 3333323 46678999999999876543 3688
Q ss_pred EEeCCCc
Q 029743 149 LWDLDDI 155 (188)
Q Consensus 149 iwd~~~~ 155 (188)
+||+...
T Consensus 362 ~~d~~~~ 368 (435)
T PRK05137 362 VMKPDGS 368 (435)
T ss_pred EEECCCC
Confidence 8887554
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-13 Score=91.25 Aligned_cols=110 Identities=9% Similarity=0.133 Sum_probs=81.7
Q ss_pred CeeecccCeEEEE--eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC---CCeEEEEEeCCcccccce
Q 029743 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~--~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~ 75 (188)
++|+|+|+.+++. .....|.+||++ ++.+..+. ...+..+.|+|+|++|++++. .|.+.+||++. ...+..
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~ 140 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST 140 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence 5799999997655 356799999997 55555554 467789999999999999865 36799999985 344444
Q ss_pred eeeccCCceeEE-eecCCCEEEEecC------CCeEEEEecccCeeeeec
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPI 118 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~------d~~v~~~d~~~~~~~~~~ 118 (188)
.. |. .+..+ |+|+|++++++.. |+.++||+.. |+.+...
T Consensus 141 ~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 141 FE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred cc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 43 33 35566 8999999998864 6778999974 6655443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-13 Score=96.59 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=118.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC------Cceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 73 (188)
+.||.++++|++|+.|..+++|++.. .+++.... .|...|.|++|....+.+++|..+++|.+-|+.+ ++.+
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt-~qsi 140 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET-KQSI 140 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc-ceee
Confidence 46899999999999999999999863 34444443 4568999999999889999999999999999986 3444
Q ss_pred ceeee-ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe-eee-ecccCCCcceeEEEeeCCCC-EEEEEeCCCcEE
Q 029743 74 DRFVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQ-PIAEHSEYPIESLALSHDRK-FLGSISHDSMLK 148 (188)
Q Consensus 74 ~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 148 (188)
-.+.. ...+.|+.+ .+|..+.+++.+.++.|.+||.+... +.. .+.+..+...+.+.|+|... +|++.+..+-+.
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 44432 034578888 69999999999999999999998543 221 12222233578899999765 557778889999
Q ss_pred EEeCCCcc
Q 029743 149 LWDLDDIL 156 (188)
Q Consensus 149 iwd~~~~~ 156 (188)
+||++...
T Consensus 221 ~~D~R~~~ 228 (609)
T KOG4227|consen 221 VFDRRMQA 228 (609)
T ss_pred ceeecccc
Confidence 99998754
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=98.87 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=115.8
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCce-eeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcc--c-cccee
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK--D-CSDRF 76 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~--~-~~~~~ 76 (188)
.|+.+...++++..=|...+||.+.+.. ...+.-|...|..++++| ...+|++++.|++.+|||++.-. . +....
T Consensus 286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst 365 (498)
T KOG4328|consen 286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST 365 (498)
T ss_pred cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence 4566666777777767999999987543 555667888999999999 45788999999999999997522 1 12223
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecc----cCeeeeecccCC--Cc--ceeEEEeeCCCCEEEEEeCCCcE
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL----PNRIIQPIAEHS--EY--PIESLALSHDRKFLGSISHDSML 147 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~----~~~~~~~~~~~~--~~--~v~~~~~~~~~~~l~~~~~d~~i 147 (188)
.. |...|.+. |||.+..|++.+.|..|+|||.. ...+..++.... +. ......|.|+..++++|..-..|
T Consensus 366 ~~-HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~I 444 (498)
T KOG4328|consen 366 LP-HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPI 444 (498)
T ss_pred cc-ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcce
Confidence 34 88899999 89988889999999999999973 333444432111 11 23456899999999999998999
Q ss_pred EEEeCCCcc
Q 029743 148 KLWDLDDIL 156 (188)
Q Consensus 148 ~iwd~~~~~ 156 (188)
-|+|-+.++
T Consensus 445 Dv~~~~~~q 453 (498)
T KOG4328|consen 445 DVFDGNGGQ 453 (498)
T ss_pred eEEcCCCCE
Confidence 999988776
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-13 Score=95.03 Aligned_cols=150 Identities=15% Similarity=0.193 Sum_probs=110.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcc--------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFK-------- 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~-------- 70 (188)
++|++.-..++++..|..|++|+-.. .+...++ .....|++++|.|.+ ..|++|+.. -|.+|......
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRM 181 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccc
Confidence 46777666788999999999999766 4444444 345679999999955 567777765 48899875321
Q ss_pred ---cccceeeeccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC
Q 029743 71 ---DCSDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (188)
Q Consensus 71 ---~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 145 (188)
...+.++.....+|+++ |.+||..+++++ .+..|.|||..++..+.......+ .++-+.|+||+.+|..+.-|+
T Consensus 182 ~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-g~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 182 MSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-GFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred ccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC-ceeeEEEcCCCCEEEEecccc
Confidence 11222222123678999 899999999988 467799999999887655522324 688999999999999999999
Q ss_pred cEEEEeCC
Q 029743 146 MLKLWDLD 153 (188)
Q Consensus 146 ~i~iwd~~ 153 (188)
..++|+..
T Consensus 261 vfrlw~e~ 268 (445)
T KOG2139|consen 261 VFRLWQEN 268 (445)
T ss_pred eeeeehhc
Confidence 99999543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-13 Score=105.18 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=114.5
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccc--ccceee
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKD--CSDRFV 77 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~ 77 (188)
.|..+..+|++++.-..|+|||.....+...++ +....++++.-+- .|+.+++|..||.|++||.+.... .+...+
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 455555667776667999999999887777766 3444566666443 579999999999999999986433 455556
Q ss_pred eccCCc--eeEE-eecCCC-EEEEecCCCeEEEEecccCee--eeecccCC--CcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 78 GLSPNS--VDAL-LKLDED-RVITGSENGLISLVGILPNRI--IQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 78 ~~~~~~--v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
. |... |..+ +.+.|- .|++|+.+|.|++||++.... ..++..|. +...+++..|+....+++|+. +.|+|
T Consensus 1252 ~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1252 E-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred c-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE
Confidence 6 6655 6666 666554 599999999999999997422 22233333 224899999999999999988 99999
Q ss_pred EeCCCccCC
Q 029743 150 WDLDDILKG 158 (188)
Q Consensus 150 wd~~~~~~~ 158 (188)
|++......
T Consensus 1330 y~~~G~~l~ 1338 (1387)
T KOG1517|consen 1330 YSLSGEQLN 1338 (1387)
T ss_pred EecChhhhc
Confidence 999865543
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-14 Score=111.86 Aligned_cols=116 Identities=17% Similarity=0.319 Sum_probs=106.3
Q ss_pred eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEec
Q 029743 31 TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~ 109 (188)
+.+.+|...|.|+.|...|+++++|+.|..++||.+.+ ..++..+.+ |.+.++.+ .+.+...+++++.|..|++|.+
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCCC-CccccchhccchhhhhhhhcccCceEEEEec
Confidence 34558999999999999999999999999999999886 699999999 99999999 4778888999999999999999
Q ss_pred ccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 110 LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 110 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
+.+.++..+.+|.+ .|++++|+|-. +.+.||++++||.+
T Consensus 262 ~~~~pvsvLrghtg-avtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTG-AVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred CCCchHHHHhcccc-ceeeeccCccc----cCCCCCceEecccc
Confidence 99999999999987 89999999965 67789999999998
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.2e-14 Score=102.54 Aligned_cols=124 Identities=18% Similarity=0.252 Sum_probs=104.6
Q ss_pred eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC-------cccccceeeeccCCceeEE-eecCCCEEEEecCCCe
Q 029743 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-------FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGL 103 (188)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~ 103 (188)
++..|...+..++|.|-...|++++.|+.+.+|.+.. .-.++.++.+ |.++|.|+ ..+++.++++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccCce
Confidence 4456788899999999999999999999999999932 1245667889 99999999 6889999999999999
Q ss_pred EEEEecccC----------eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 104 ISLVGILPN----------RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 104 v~~~d~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|+.|++... .....+.+|.+ .|+.+++|+....|++++.||+++.|+......
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 999966421 23456788987 799999999999999999999999999887665
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-12 Score=96.26 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=99.8
Q ss_pred CeeecccCeEEEEeC---CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe-cCCC--eEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSG--TVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~ 74 (188)
.+|||||+.|+..+. +..|++|++.+++.... ......+..+.|+|||+.|+.. +.++ .|++||+.. +. ..
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~-~~ 280 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IR 280 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CC-EE
Confidence 369999999987643 35799999988764332 2233345678999999988754 4444 588888864 23 33
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCC-Ce--EEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC---CcE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN-GL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~~--v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i 147 (188)
.+.. +...+... |+|+|+.|+..+.+ +. |+++++.++... .+..... ......|+|||++|+..+.+ ..|
T Consensus 281 ~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 281 QVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred EccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC-CccCEEECCCCCEEEEEEccCCCceE
Confidence 4443 44445555 89999988776653 43 555566665443 3333322 45678999999998876543 358
Q ss_pred EEEeCCCccC
Q 029743 148 KLWDLDDILK 157 (188)
Q Consensus 148 ~iwd~~~~~~ 157 (188)
.+||+.+...
T Consensus 358 ~~~dl~~g~~ 367 (429)
T PRK03629 358 AKQDLATGGV 367 (429)
T ss_pred EEEECCCCCe
Confidence 8899877653
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-12 Score=95.72 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=102.7
Q ss_pred eeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEE-ecCCC--eEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~ 75 (188)
+|+|||++|+.+... ..|++|++.+++.... ..+...+.+++|+|+++.|+. .+.++ .|++|++.. .....
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~--~~~~~ 272 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG--KQLTR 272 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC--CCEEE
Confidence 589999999987653 4799999988765433 335556778999999987764 44444 588888764 23333
Q ss_pred eeeccCCceeEE-eecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC---cEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLK 148 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~ 148 (188)
+.. +....... |+|+|+.|+..+. .+ .|+++++.+++.. .+..+.. .+..+.|+|++++++.++.++ .|.
T Consensus 273 l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~-~~~~~~~spdg~~i~~~~~~~~~~~i~ 349 (417)
T TIGR02800 273 LTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG-YNASPSWSPDGDLIAFVHREGGGFNIA 349 (417)
T ss_pred CCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC-CccCeEECCCCCEEEEEEccCCceEEE
Confidence 443 43333344 8999998876654 33 5888888766543 3333323 567889999999998887765 788
Q ss_pred EEeCCCcc
Q 029743 149 LWDLDDIL 156 (188)
Q Consensus 149 iwd~~~~~ 156 (188)
+||+.+..
T Consensus 350 ~~d~~~~~ 357 (417)
T TIGR02800 350 VMDLDGGG 357 (417)
T ss_pred EEeCCCCC
Confidence 99988743
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-12 Score=98.35 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=119.3
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeee----ecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC---cccccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTR----SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY---FKDCSD 74 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~ 74 (188)
.+++.|++.+.. .+..+++|+...+..... -..|...+++.+++|++++++++..||.|.+|.--. .....+
T Consensus 167 ~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 167 VDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccce
Confidence 455556555544 346788898877442111 124777789999999999999999999999996421 223445
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.+.- |...|.++ |+++|.+|++|+..+.+.+|.+.+++ .+-+..- +++|..+.++||+...+....|+.|.+-...
T Consensus 246 ~lHW-H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRL-gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 246 LLHW-HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRL-GSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EEEe-cccccceeEEecCCceEeecccceEEEEEeecCCC-ccccccc-CCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 5666 88899999 99999999999999999999999888 3334433 4489999999999999999999999999887
Q ss_pred CccCCCCC
Q 029743 154 DILKGSGN 161 (188)
Q Consensus 154 ~~~~~~~~ 161 (188)
++.....+
T Consensus 323 dl~~k~tI 330 (792)
T KOG1963|consen 323 DLEIKSTI 330 (792)
T ss_pred chhhhhhc
Confidence 76654443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-12 Score=95.37 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=102.1
Q ss_pred CeeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCC--eEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~ 74 (188)
.+|+|||+.|+..+.. ..|++|++.+++... +........++.|+|+|+.|+ +.+.++ .|++||+.. +. ..
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~-~~ 285 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS-RQ-LT 285 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC-CC-eE
Confidence 3689999999987643 469999998876543 333344556889999998775 445555 588888865 23 34
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecC-CCe--EEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC---cE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~--v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i 147 (188)
.+.. +....... |+|+|++++..+. ++. |+++++.+++... +..+.. ....++|+|+|++|+..+.++ .|
T Consensus 286 ~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~-~~~~~~~SpDG~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 286 RLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN-YNARASVSPDGKKIAMVHGSGGQYRI 362 (433)
T ss_pred ECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCC-CccCEEECCCCCEEEEEECCCCceeE
Confidence 4544 44444455 8999998887664 444 6677776665432 222222 345789999999998765432 69
Q ss_pred EEEeCCCccCC
Q 029743 148 KLWDLDDILKG 158 (188)
Q Consensus 148 ~iwd~~~~~~~ 158 (188)
.+||+.+....
T Consensus 363 ~v~d~~~g~~~ 373 (433)
T PRK04922 363 AVMDLSTGSVR 373 (433)
T ss_pred EEEECCCCCeE
Confidence 99999776543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-12 Score=99.43 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=122.2
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCC----CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
++||+++++|+|..||.|.+|.--. ......+.-|...|.+++|+++|.+|.+|+..+.+.+|.+.+++ .+.+.
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLP 289 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLP 289 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--ccccc
Confidence 6899999999999999999996432 12345667899999999999999999999999999999998743 33333
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC----------CcceeEEEeeCCCCEEEEEeCCCc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS----------EYPIESLALSHDRKFLGSISHDSM 146 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~d~~ 146 (188)
. -.+++..+ ++||+.+.+....|+.|.+....+.....++.+.. ..-.+.++++|..+.++..+..+.
T Consensus 290 R-Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~ 368 (792)
T KOG1963|consen 290 R-LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH 368 (792)
T ss_pred c-cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence 3 67788888 79999999999999999998875544333332221 113567889997778888899999
Q ss_pred EEEEeCCCccCCCC
Q 029743 147 LKLWDLDDILKGSG 160 (188)
Q Consensus 147 i~iwd~~~~~~~~~ 160 (188)
|.+||+-+......
T Consensus 369 vQ~ydl~td~~i~~ 382 (792)
T KOG1963|consen 369 VQFYDLYTDSTIYK 382 (792)
T ss_pred EEEEeccccceeee
Confidence 99999987665443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-12 Score=94.91 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=98.2
Q ss_pred CeeecccCeEEEE-eCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CCe--EEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGT--VLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~-~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~ 74 (188)
++|+|||+.|+.. +.++ .|++||+.+++.. .+..+......++|+|+|+.|+..+. ++. |.++++.. ...+
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~ 329 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAE 329 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeE
Confidence 3699999987644 4444 5999999887754 44445555678899999998876653 444 55555543 2233
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCC---eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC---CcE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i 147 (188)
.+.. ........ |+|+|++++..+.++ .|.+||+.+++.. .+... . ......|+|||++|+..+.+ +.|
T Consensus 330 ~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 330 RLTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred Eeec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCCCEEEEEEecCCceEE
Confidence 3333 33333345 899999988765432 5999999877655 44322 2 34567999999988766643 467
Q ss_pred EEEeCCCc
Q 029743 148 KLWDLDDI 155 (188)
Q Consensus 148 ~iwd~~~~ 155 (188)
.++++...
T Consensus 406 ~~~~~~g~ 413 (433)
T PRK04922 406 AAVSTDGR 413 (433)
T ss_pred EEEECCCC
Confidence 88888654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.9e-13 Score=95.29 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=94.1
Q ss_pred EEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-
Q 029743 41 TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI- 118 (188)
Q Consensus 41 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~- 118 (188)
..++|+++|..+++++.||.+|+|+... ...+..... |...|.++ |+|||++|++.+.+ ..+||+.+++.++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~-~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIA-HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHh-hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 6899999999999999999999999764 344445555 88899999 99999999999999 8999999776211100
Q ss_pred ------------------------------------------------------ccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 119 ------------------------------------------------------AEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 119 ------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
..+ + .|++++.+++|++++.|+.|
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~-siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-K-SISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-C-cceeEEEcCCCcEEEEeccC
Confidence 002 2 58999999999999999999
Q ss_pred CcEEEEeCCCccCCCCC
Q 029743 145 SMLKLWDLDDILKGSGN 161 (188)
Q Consensus 145 ~~i~iwd~~~~~~~~~~ 161 (188)
|.|.|++..+.+.....
T Consensus 303 GsVai~~~~~lq~~~~v 319 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYV 319 (398)
T ss_pred CcEEEEEeceeeeeEee
Confidence 99999999987755443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-12 Score=101.95 Aligned_cols=148 Identities=19% Similarity=0.246 Sum_probs=113.0
Q ss_pred ccCeEEEEeCCCcEEEEEcCCC---ceeeeecccccc--eEEEEEEeCCC-EEEEecCCCeEEEEEeCCc-ccccceeee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEE--LTSVVLMKNGR-KVVCGSQSGTVLLYSWGYF-KDCSDRFVG 78 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~-~~~~~~~~~ 78 (188)
.|+.+++|..||.|++||.+.. ..+...+.|... |..+.+.++|- .|++|+.+|.|++||++.. ......+..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 5789999999999999998753 345566678777 99999998774 5999999999999999873 222222222
Q ss_pred cc---CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeeccc------CCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 79 LS---PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE------HSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 79 ~~---~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
| ++..+++ .+++...+++|+. +.|+||++. |+.+..+.. ...+.+.+++|||-.-.++.|+.|..|.
T Consensus 1300 -~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1300 -HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred -ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 2 2358888 5889999999998 899999986 443333322 2223689999999998999999999999
Q ss_pred EEeCCCcc
Q 029743 149 LWDLDDIL 156 (188)
Q Consensus 149 iwd~~~~~ 156 (188)
||...+..
T Consensus 1377 iYs~~k~~ 1384 (1387)
T KOG1517|consen 1377 IYSCEKPR 1384 (1387)
T ss_pred EeecCCcC
Confidence 99877654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.5e-13 Score=100.54 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=100.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec---ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
|+..|..+++++++.|.+|+||++++++..+.++ +|.+...-+...|.|.++++.+.|.++.++|+-. ++++....
T Consensus 602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s-gEcvA~m~ 680 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS-GECVAQMT 680 (1080)
T ss_pred eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc-chhhhhhc
Confidence 4677889999999999999999999999999887 4566788888999999999999999999999976 79999999
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEeccc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
+ |...|+.+ |.+|-+.|++.+.||.|.+|.+..
T Consensus 681 G-HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 681 G-HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred C-cchheeeeeecccchhheeecCCceEEEEECch
Confidence 9 99999999 999999999999999999999853
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.9e-12 Score=95.69 Aligned_cols=150 Identities=12% Similarity=0.088 Sum_probs=116.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec---ccccceEEEEEEeCC-----CEEEEecCCCeEEEEEeCCcccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNG-----RKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
++|..||++++.|-.+|+|.+-+-. ++....+. +..++|++++|+|.. ..+++.....++..|.+. +..
T Consensus 138 CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~ 214 (1081)
T KOG1538|consen 138 CSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQ 214 (1081)
T ss_pred eeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--cee
Confidence 3688999999999999999998744 33322332 577899999999954 467888888888888875 343
Q ss_pred cceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
+..-+. -.-...|+ +.++|.+++.|+.|+.+++|- +.|-.+.++... +..|+.++..|++++++.|+.||+|..|+
T Consensus 215 Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 215 IGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred eccccc-CCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 332222 33345677 789999999999999999996 567777777654 44899999999999999999999999999
Q ss_pred CCCcc
Q 029743 152 LDDIL 156 (188)
Q Consensus 152 ~~~~~ 156 (188)
+-...
T Consensus 292 l~fST 296 (1081)
T KOG1538|consen 292 LIFST 296 (1081)
T ss_pred hHHhH
Confidence 86543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-13 Score=98.86 Aligned_cols=148 Identities=14% Similarity=0.200 Sum_probs=122.5
Q ss_pred CeeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
|.|+..|.||++...+ ..|.|.++........|....+.|.++.|+|...+|++++.. .|++||+.. +..++.+.
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k-qelvKkL~ 604 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK-QELVKKLL 604 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhH-HHHHHHHh
Confidence 5688899999987553 568888888776666665567789999999988888888764 799999975 56666666
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
. ....+..+ .+|.|.-|+.|+.|+.+..+|+.- .++.+++.-|.. .+++++||+.-..+++++.|+++.||.-
T Consensus 605 t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 605 T-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred c-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh-hhhhhhhccccceeeeecCCCcEEEEee
Confidence 5 66677888 699999999999999999999975 457778888866 7999999999999999999999999853
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-12 Score=94.39 Aligned_cols=150 Identities=20% Similarity=0.245 Sum_probs=116.0
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec-----cC---
Q 029743 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-----SP--- 81 (188)
Q Consensus 10 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~--- 81 (188)
|++++....|+-++++.|+.+..+....+.++++..++-..+|++|+.+|.|..||.+. +..+..+... +.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh-hhhheeeecccccCCCcccc
Confidence 45555567899999999999888887778999999999888999999999999999986 3444443210 22
Q ss_pred --CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCC--CCEEEEEeCCCcEEEEeCCCcc
Q 029743 82 --NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD--RKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 82 --~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
..|+++ |+.+|-.+++|+..|.+.|||+++.+++..-....+.+|..+.|.+. +..+++. ....++|||-.++.
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK 305 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC
Confidence 238888 88889999999999999999999988876544333458999999875 3445544 45789999998887
Q ss_pred CCCCC
Q 029743 157 KGSGN 161 (188)
Q Consensus 157 ~~~~~ 161 (188)
.....
T Consensus 306 ~~asi 310 (703)
T KOG2321|consen 306 PMASI 310 (703)
T ss_pred ceeec
Confidence 65444
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-11 Score=92.30 Aligned_cols=155 Identities=17% Similarity=0.065 Sum_probs=97.6
Q ss_pred eeecccCeEEEEeC-CC--cEE--EEEcCCC---ceeeeecccccceEEEEEEeCCCEEEEec-CCCeEEEEEe--CCcc
Q 029743 2 TFAADAMKLLGTSG-DG--TLS--VCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSW--GYFK 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-d~--~i~--i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~--~~~~ 70 (188)
+|||||+.|+..+. ++ .++ +|++..+ ................+|+|||+.|+..+ .++...+|.+ ...+
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 69999999887653 22 343 4666542 33333333333456789999999777654 4665555554 3222
Q ss_pred cccceeeeccCCceeEE-eecCCCEEEEecCC---CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC---
Q 029743 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH--- 143 (188)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 143 (188)
.....+.. ....+... |+|||+.|+....+ ..|.+||+.+++... +..... .+....|+|||+.|+....
T Consensus 317 ~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~-~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 317 QSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPE-NKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred cceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCC-CccceEECCCCCEEEEEECCCC
Confidence 23344444 44445555 89999988866542 469999998887644 332222 5678999999998875432
Q ss_pred CCcEEEEeCCCccCCC
Q 029743 144 DSMLKLWDLDDILKGS 159 (188)
Q Consensus 144 d~~i~iwd~~~~~~~~ 159 (188)
...|+++++.+.....
T Consensus 394 ~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 394 ESELYLISLITKKTRK 409 (428)
T ss_pred CceEEEEECCCCCEEE
Confidence 3578888987765443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-11 Score=88.81 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=103.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec-CCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
.|+|||+++++++.|+.|.++|+.+++.+..++. .....+++++++|+++++++ ..+.+.++|..+ .+.++.+.. .
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~-~ 119 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPT-G 119 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE---
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeeccc-c
Confidence 5899999999999999999999999999988874 34578899999999998775 578999999876 455555532 2
Q ss_pred -------CCceeEE-eecCCCEE-EEecCCCeEEEEecccCeee--eecccCCCcceeEEEeeCCCCEEEEE-eCCCcEE
Q 029743 81 -------PNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSI-SHDSMLK 148 (188)
Q Consensus 81 -------~~~v~~~-~~~~~~~l-~~~~~d~~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~ 148 (188)
...+..+ .+|....+ +..-..+.|.+.|....+.+ ..+... . ......|+|++++++.+ ...+.|-
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g-~-~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG-R-FPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---T-TEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-c-cccccccCcccceeeecccccceeE
Confidence 2345666 57777744 44556688988887665433 233332 2 57889999999987665 4567899
Q ss_pred EEeCCCcc
Q 029743 149 LWDLDDIL 156 (188)
Q Consensus 149 iwd~~~~~ 156 (188)
++|.++..
T Consensus 198 viD~~~~k 205 (369)
T PF02239_consen 198 VIDTKTGK 205 (369)
T ss_dssp EEETTTTE
T ss_pred EEeeccce
Confidence 99988764
|
... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=92.98 Aligned_cols=148 Identities=15% Similarity=0.147 Sum_probs=95.1
Q ss_pred CeeecccCeEEE-EeCCCcEEEE--EcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLG-TSGDGTLSVC--NLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~-~~~d~~i~i~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~ 76 (188)
.+|||||+.|+. .+.++...|| |+..+. ...+..+........|+|||+.|+..+. ++...+|.++..+.....+
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 369999998875 5667765555 444444 3444445555677899999998876554 4666777664322333333
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCC---eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC---cEEE
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLKL 149 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~---~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i 149 (188)
.. ........ |+|+|++++..+.++ .|.+||+.+++... +... . ......|+||++.|+.++.++ .+.+
T Consensus 324 t~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~-~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 324 TF-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-T-RDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ec-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-C-CccCceECCCCCEEEEEEecCCCEEEEE
Confidence 32 22223334 899999998776544 59999998876543 3322 2 346789999999988776543 3555
Q ss_pred EeCC
Q 029743 150 WDLD 153 (188)
Q Consensus 150 wd~~ 153 (188)
.++.
T Consensus 400 ~~~~ 403 (427)
T PRK02889 400 VSSD 403 (427)
T ss_pred EECC
Confidence 5554
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.8e-12 Score=99.21 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=114.6
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCC-------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc-c----
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-D---- 71 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~---- 71 (188)
++++.++++|+.||+|++|+...- +...+......++.++...+.++.+++++.||.|++.+++... .
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence 345689999999999999998641 1112222246789999999999999999999999999997521 1
Q ss_pred -ccceeeeccCCceeEE--e-ecCCC-EEEEecCCCeEEEEecccCeeeeeccc--CCCcceeEEEeeCCCCEEEEEeCC
Q 029743 72 -CSDRFVGLSPNSVDAL--L-KLDED-RVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 72 -~~~~~~~~~~~~v~~~--~-~~~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
+.+.......+.+..+ + ...+. .++.+...+.|..||+++..-...++. ..+ .|++++.+|-+.+++.|+..
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG-~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG-LVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc-ceeEEEecCCceEEEEecCC
Confidence 1111111023344445 3 23444 788888889999999987665444432 224 79999999999999999999
Q ss_pred CcEEEEeCCCccCCCCCCCcc
Q 029743 145 SMLKLWDLDDILKGSGNNISQ 165 (188)
Q Consensus 145 ~~i~iwd~~~~~~~~~~~~~~ 165 (188)
|.+.+||++-........++.
T Consensus 1217 G~l~lWDLRF~~~i~sw~~P~ 1237 (1431)
T KOG1240|consen 1217 GQLVLWDLRFRVPILSWEHPA 1237 (1431)
T ss_pred ceEEEEEeecCceeecccCcc
Confidence 999999999776555444443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.1e-12 Score=88.07 Aligned_cols=153 Identities=10% Similarity=0.065 Sum_probs=103.4
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
|.|++||..+++++. |..|.|||+.++..+.......+.++-+.|+||+.+|+++..|+..++|.....-.+.+-..+
T Consensus 201 mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg- 279 (445)
T KOG2139|consen 201 MQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG- 279 (445)
T ss_pred EEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc-
Confidence 578999999999876 578999999998776555445677899999999999999999999999965433333333444
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEeccc-Ce--------------eeeec-----ccC---CCcceeEEEeeCCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NR--------------IIQPI-----AEH---SEYPIESLALSHDR 135 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~-~~--------------~~~~~-----~~~---~~~~v~~~~~~~~~ 135 (188)
.. .+... |+|+|.+|+..+... -++|.+.- ++ ++..+ ... -.+.+.+++|.|.|
T Consensus 280 sg-rvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 280 SG-RVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred CC-ceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence 33 44444 899999776554332 23444321 00 00000 111 02368899999999
Q ss_pred CEEEEEeCCC--------cEEEEeCCCcc
Q 029743 136 KFLGSISHDS--------MLKLWDLDDIL 156 (188)
Q Consensus 136 ~~l~~~~~d~--------~i~iwd~~~~~ 156 (188)
.+|++.-..+ .|.+||.++..
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 9998775433 36667776543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-11 Score=91.73 Aligned_cols=149 Identities=16% Similarity=0.089 Sum_probs=99.3
Q ss_pred eeecccCeEEE-EeCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC--eEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~-~~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~ 75 (188)
+|||||+.|+. .+.++ .|++||+.++... .+..+........|+|+|+.|+..+. ++ .|+++|+.. ...+.
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~ 328 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRR 328 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEE
Confidence 69999998764 44454 4777888877654 45545566778999999998877653 33 577777653 33444
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCC---CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC------C
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------S 145 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~ 145 (188)
+.. ........ |+|+|++++....+ ..|.+|++..+.. ..+... . .+..+.|+|||+.|+..+.+ .
T Consensus 329 lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 543 34444455 89999998876543 3588888765443 334322 2 46788999999998765532 3
Q ss_pred cEEEEeCCCccC
Q 029743 146 MLKLWDLDDILK 157 (188)
Q Consensus 146 ~i~iwd~~~~~~ 157 (188)
.++++++.....
T Consensus 405 ~L~~~dl~g~~~ 416 (435)
T PRK05137 405 KLYTVDLTGRNE 416 (435)
T ss_pred eEEEEECCCCce
Confidence 578888866543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-11 Score=82.65 Aligned_cols=95 Identities=13% Similarity=0.261 Sum_probs=80.2
Q ss_pred CCcEEEEEcCCCce--eeeecccccceEEEEEEeCCCEEEEecCCCe-EEEEEeCCcccccceee-eccCCceeEE-eec
Q 029743 16 DGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRFV-GLSPNSVDAL-LKL 90 (188)
Q Consensus 16 d~~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~-~~~~~~v~~~-~~~ 90 (188)
-|.|+|-|+...+. ...+++|...|.|++.+-+|..+|+++..|+ |+|||..+ +..++.++ +.....+.++ |+|
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEeCC
Confidence 58899999876544 4677899999999999999999999999996 89999986 56666664 3234568999 899
Q ss_pred CCCEEEEecCCCeEEEEeccc
Q 029743 91 DEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 91 ~~~~l~~~~~d~~v~~~d~~~ 111 (188)
+..+|++++..|+|+|+.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999999874
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-12 Score=90.23 Aligned_cols=131 Identities=13% Similarity=0.172 Sum_probs=108.4
Q ss_pred eeecc--cCeEEEEeCCCcEEEEEcCCC-ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 2 TFAAD--AMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~--~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
.|-|. ...+++++.-+.+++||.+.+ +++..+.....+++++...|.++.+++|..-+.+..||++...-....+.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 45555 678999999999999999865 567777777889999999999999999999999999999875444444788
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 135 (188)
..+.++++ ++|.++++++++.|..|+|+|+++.+++....-.+ .++++.+.++-
T Consensus 289 -~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs--~lt~il~~~~~ 343 (412)
T KOG3881|consen 289 -ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS--RLTFILLRDDV 343 (412)
T ss_pred -ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc--cccEEEecCCc
Confidence 88899999 89999999999999999999999977665554332 57788886643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-11 Score=89.68 Aligned_cols=150 Identities=17% Similarity=0.075 Sum_probs=98.8
Q ss_pred eeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCC--eEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~ 75 (188)
.|||||+.|+..+.+ ..|++|++.+++... +......+....|+|+|+.|+ +...++ .|+++|+.. .....
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~ 281 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS--RQLSR 281 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC--CCeEE
Confidence 689999999877643 468999998876543 332334556789999998876 444454 577788864 23344
Q ss_pred eeeccCCceeEE-eecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC-C--cEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-S--MLK 148 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~ 148 (188)
+.. +....... |+|+|+.++..+. ++ .|+++++.+++..... .... ......|+|+++.|+..+.+ + .|.
T Consensus 282 lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~-~~~~~~~Spdg~~i~~~~~~~~~~~l~ 358 (430)
T PRK00178 282 VTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGN-YNARPRLSADGKTLVMVHRQDGNFHVA 358 (430)
T ss_pred ccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCC-CccceEECCCCCEEEEEEccCCceEEE
Confidence 444 44444444 8999998776553 33 5777788777643322 1112 23467899999999876643 3 588
Q ss_pred EEeCCCccC
Q 029743 149 LWDLDDILK 157 (188)
Q Consensus 149 iwd~~~~~~ 157 (188)
++|+.+...
T Consensus 359 ~~dl~tg~~ 367 (430)
T PRK00178 359 AQDLQRGSV 367 (430)
T ss_pred EEECCCCCE
Confidence 889887543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.8e-11 Score=89.13 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=95.3
Q ss_pred eeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEE-ecCCCe--EEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGT--VLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--i~~~d~~~~~~~~~~ 75 (188)
.|||||+.|+..+.+ ..|+++|+.+++... +..........+|+|+|+.|+. .+.++. |.++|+.. .....
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t--g~~~~ 300 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT--KALTR 300 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC--CCeEE
Confidence 699999999877543 368889998876532 2222334457899999998765 455664 66667654 33444
Q ss_pred eeeccCCceeEE-eecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC-CC--cEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DS--MLK 148 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~ 148 (188)
+.. +....... |+|+|+.++..+. ++ .|+++|+.+++... +..... .....+|+|||++|+..+. ++ .|.
T Consensus 301 lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 301 ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE-QNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC-CCcCeeECCCCCEEEEEEecCCceEEE
Confidence 444 44444445 8999998876553 33 46777777666433 221212 2345789999999876654 34 456
Q ss_pred EEeCCCccC
Q 029743 149 LWDLDDILK 157 (188)
Q Consensus 149 iwd~~~~~~ 157 (188)
++|+.+...
T Consensus 378 ~~dl~~g~~ 386 (448)
T PRK04792 378 RQDLETGAM 386 (448)
T ss_pred EEECCCCCe
Confidence 677776543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.8e-12 Score=89.51 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=102.9
Q ss_pred eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-----ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEE
Q 029743 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-----KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLIS 105 (188)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~ 105 (188)
-+.+|.+.|.++.|+.++++|++|+.|..+++|.++.. ..+++.....|...|.|+ |....+++++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 45579999999999999999999999999999998531 123333322156889999 888888999999999999
Q ss_pred EEecccCeeeeecccCC-CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 106 LVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 106 ~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+.|+.+.+.+..+.... .+.|+.+..+|..+.|++.+.++.|.+||++...
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 99999988877664322 2379999999999999999999999999998765
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-11 Score=88.53 Aligned_cols=146 Identities=12% Similarity=0.161 Sum_probs=123.4
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
+...++-|...|.|.+|++..++....+. .|.++|.++.++.+-..|.+++.|+.+..|+... ....+.+.. ....
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~-~~~~ 146 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKE-QKPL 146 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeecc-CCCc
Confidence 45567888889999999999998877765 7999999999999999999999999999999975 677777877 7777
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCC-----CCEEE-EEeCCCcEEEEeCCCcc
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD-----RKFLG-SISHDSMLKLWDLDDIL 156 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~-~~~~d~~i~iwd~~~~~ 156 (188)
+.++ .+|||..+++++. .|++||+.+++.+.+|.+|.+ +|+++.|-.+ |.+++ +...+..+.+|-+....
T Consensus 147 ~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred cceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 8888 6999999998875 799999999999999999976 9999999877 66655 44466778888777643
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=84.79 Aligned_cols=155 Identities=12% Similarity=0.053 Sum_probs=114.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee--eeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccce-e
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDR-F 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~ 76 (188)
+.|++.+..++++..+|.+.+-+....... +..+.|..+.+-..|+- +.+.+++|+.|+.+..||++.++..+.. .
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 357788888999888899986666555443 47789999999999986 4478899999999999999855544443 4
Q ss_pred eeccCCceeEEe-e-cCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCCcEEEEeC
Q 029743 77 VGLSPNSVDALL-K-LDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDL 152 (188)
Q Consensus 77 ~~~~~~~v~~~~-~-~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~ 152 (188)
+. |...|.++. + |.+.++++|+.|..|++||.++ ++++..-... + .|+.+.++|.-. .|+.+..-+-.+|-+.
T Consensus 207 kv-H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-G-GVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 207 KV-HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-G-GVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ee-eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-c-ceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 45 788899994 4 5788999999999999999994 6777654433 3 699999999533 2333333444566666
Q ss_pred CCccCC
Q 029743 153 DDILKG 158 (188)
Q Consensus 153 ~~~~~~ 158 (188)
+....+
T Consensus 284 ~~~~~e 289 (339)
T KOG0280|consen 284 SDKVLE 289 (339)
T ss_pred cccccc
Confidence 655443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=91.20 Aligned_cols=155 Identities=12% Similarity=0.179 Sum_probs=119.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeec------cccc-----ceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE------FSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 70 (188)
..++-..+|++|+.+|.|..||.+.......+. .|.+ .|+++.|+.+|-.+++|...|.+.+||++...
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 456777899999999999999998765444432 2333 39999999999999999999999999999754
Q ss_pred cccceeeeccCCceeEE-eecC-CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 71 DCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
..+..-.+ ..-++..+ |.+. ++--+.......++|||-.+|++...+.... .+..+++-|++.++.++-.+..+.
T Consensus 262 pl~~kdh~-~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~--~lND~C~~p~sGm~f~Ane~~~m~ 338 (703)
T KOG2321|consen 262 PLLVKDHG-YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS--DLNDFCFVPGSGMFFTANESSKMH 338 (703)
T ss_pred ceeecccC-CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccC--CcCceeeecCCceEEEecCCCcce
Confidence 44433344 45677777 6443 3333444556689999999999888876553 589999999999999999999999
Q ss_pred EEeCCCccCCC
Q 029743 149 LWDLDDILKGS 159 (188)
Q Consensus 149 iwd~~~~~~~~ 159 (188)
.|-+....+.+
T Consensus 339 ~yyiP~LGPaP 349 (703)
T KOG2321|consen 339 TYYIPSLGPAP 349 (703)
T ss_pred eEEccccCCCc
Confidence 99888766544
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-11 Score=92.60 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=115.5
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCc--------eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
.|.| +.+.++.|+..|.|+.-+....+ .......|.++|.++.++|-+..++..+.|.+++||.-.....+
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 3444 45678899999999875443321 12244578899999999997766665555999999998733566
Q ss_pred cceeeeccCCceeEE-eecCC-CEEEEecCCCeEEEEecccC--eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 73 SDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~v~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
+..+.. +...++++ |||.. ..++++..+|.|.+||+... .++........ ....+.|+++|+.|+.|...|.+.
T Consensus 434 l~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~-~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 434 LLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP-ALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred chhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccc-ccceeecCCCCcEEEEecCCCcEE
Confidence 666666 77779999 89854 57788888999999999743 34444444433 567788888999999999999999
Q ss_pred EEeCCCccCCC
Q 029743 149 LWDLDDILKGS 159 (188)
Q Consensus 149 iwd~~~~~~~~ 159 (188)
+|++.......
T Consensus 512 ~~~l~~~l~~~ 522 (555)
T KOG1587|consen 512 ILKLSESLAVP 522 (555)
T ss_pred EEEcCchhhcc
Confidence 99997654443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-11 Score=92.69 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=116.8
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccce-----EEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEEL-----TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
-+.+.++.+..++.+.+||...+.....++. ...+ .-+-++++.-++++|+--+.|.+|+......+. .+.+
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~G- 173 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKG- 173 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCC-CceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eecc-
Confidence 3567788888899999999988777666552 2221 122245566788999999999999987432333 5888
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeee-ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|.+.+..+ ++-+|+++++.+.|..+++|++.+.+... ..-+|+. .|+.++|.|+ .+++++.|.+.++|+.+....
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~l 250 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNGTQL 250 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc-eeEEEEeccc--eeEEeccceEEEEEeccccee
Confidence 99999999 89999999999999999999999988665 6677865 8999999998 899999999999997665443
Q ss_pred C
Q 029743 158 G 158 (188)
Q Consensus 158 ~ 158 (188)
.
T Consensus 251 ~ 251 (967)
T KOG0974|consen 251 E 251 (967)
T ss_pred h
Confidence 3
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=83.19 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=108.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCce----eeeecccccceEEEEEEeCCCEEEEecCCC---eEEEEEeCCcccccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKDCSD 74 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~ 74 (188)
..+|.++++|.+..+....++++..... .... .-....+++.+..+......+..-| .+.+|.... .+..
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~~~ 145 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--GRCE 145 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccc--cCcc
Confidence 4678899999998888887888765332 2111 2233445566655555555554444 444444432 3444
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.+-+ |-..+..+ ++||+++++++..|..|++-.......+..+ -+|.+ -|..++.-++. .|++++.|++|++||+
T Consensus 146 ~~lG-hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e-FVS~isl~~~~-~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 146 PILG-HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE-FVSTISLTDNY-LLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhh-hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh-heeeeeeccCc-eeeecCCCCcEEEEec
Confidence 5567 88899999 7999999999999999999877655555554 45876 59999988664 5899999999999999
Q ss_pred CCccCCCC
Q 029743 153 DDILKGSG 160 (188)
Q Consensus 153 ~~~~~~~~ 160 (188)
.++.....
T Consensus 223 ~sgk~L~t 230 (390)
T KOG3914|consen 223 TSGKLLDT 230 (390)
T ss_pred ccCCcccc
Confidence 99887644
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-11 Score=82.22 Aligned_cols=144 Identities=11% Similarity=0.097 Sum_probs=105.6
Q ss_pred Ceeeccc-CeEEEEeCCCcEEEEEcCCCceeeee---cccccceEEEEEEeCC-CEEEEecCC-CeEEEEEeCCcccccc
Q 029743 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNG-RKVVCGSQS-GTVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~-~~l~~~~~d-~~i~~~d~~~~~~~~~ 74 (188)
++|...+ +.+|+.+.||.+++||++..+.-..+ +....+..-++|+++. +++++-..| ..|.+.|++....++.
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva 281 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA 281 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee
Confidence 3566644 45788899999999999875432222 2335678899999844 677765444 5799999999888999
Q ss_pred eeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccC------eeeeecccCCCcceeEEEeeC-CCCEEEEEeCCC
Q 029743 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN------RIIQPIAEHSEYPIESLALSH-DRKFLGSISHDS 145 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 145 (188)
.+++ |...|..+ |.| ....+++++.|..+.+||++.- .++..+... +.|+.+.|++ ....++.+. ++
T Consensus 282 ~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~--~EVNqi~Ws~~~~Dwiai~~-~k 357 (364)
T KOG0290|consen 282 RLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAG--GEVNQIQWSSSQPDWIAICF-GK 357 (364)
T ss_pred hhhc-CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhcc--ceeeeeeecccCCCEEEEEe-cC
Confidence 9999 99999999 877 4568999999999999999752 244445533 3699999996 445666554 44
Q ss_pred cEE
Q 029743 146 MLK 148 (188)
Q Consensus 146 ~i~ 148 (188)
++.
T Consensus 358 kle 360 (364)
T KOG0290|consen 358 KLE 360 (364)
T ss_pred eee
Confidence 443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-10 Score=85.45 Aligned_cols=156 Identities=13% Similarity=0.019 Sum_probs=93.0
Q ss_pred eeecccCeEE---EEeCC--CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC----eEEEEEeCCc-c
Q 029743 2 TFAADAMKLL---GTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG----TVLLYSWGYF-K 70 (188)
Q Consensus 2 ~~s~~~~~l~---~~~~d--~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~~~d~~~~-~ 70 (188)
+|||||+.++ +...+ ..|++.++..++..+.. ...+......|+|||+.|+..+. ++ .+.+|++... .
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 5999997532 33333 46888888877654332 23445567899999988876543 23 2344666531 1
Q ss_pred cccceeeeccCCceeEE-eecCCCEEEEec-CCCe--EEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCC-
Q 029743 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGL--ISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD- 144 (188)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~--v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 144 (188)
.....+........... |+|||+.|+..+ .+|. |+++++.. +.....+..+.. .+....|+|||+.|+..+.+
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-NSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC-CccceeECCCCCEEEEEEcCC
Confidence 12223332022233444 899999877665 4564 44445432 223344444433 56788999999998866543
Q ss_pred --CcEEEEeCCCccCCC
Q 029743 145 --SMLKLWDLDDILKGS 159 (188)
Q Consensus 145 --~~i~iwd~~~~~~~~ 159 (188)
..|.+||+.+.....
T Consensus 349 g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 349 GVRQICVYDLATGRDYQ 365 (428)
T ss_pred CCcEEEEEECCCCCeEE
Confidence 469999998776543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-10 Score=81.64 Aligned_cols=146 Identities=15% Similarity=0.155 Sum_probs=101.1
Q ss_pred cCeEE-EEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 7 AMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 7 ~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
+++++ +-..++.|.+.|..+.+.+..+......-..+.++|||+++++++.|+.|.++|+.+ .+.+..+.. .....
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~--G~~~~ 81 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKV--GGNPR 81 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE---SSEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEec--CCCcc
Confidence 34554 445579999999999999988885544445678999999999999999999999987 467777764 44456
Q ss_pred EE-eecCCCEEEEec-CCCeEEEEecccCeeeeecccCC------CcceeEEEeeCCCCEEEEEeC-CCcEEEEeCCCc
Q 029743 86 AL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHS------EYPIESLALSHDRKFLGSISH-DSMLKLWDLDDI 155 (188)
Q Consensus 86 ~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~ 155 (188)
.+ ++++|+++++++ ..+.+.++|.++.++++.+.... ..++..+..+|....++..-. .+.|.+-|....
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 67 799999998876 68899999999999888775431 225678888888885655544 478887787654
|
... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6e-10 Score=82.61 Aligned_cols=131 Identities=13% Similarity=0.192 Sum_probs=97.5
Q ss_pred CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe--cCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCC
Q 029743 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG--SQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDED 93 (188)
Q Consensus 17 ~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~ 93 (188)
.++++++++.....-.+. ..++|+++.|+|+++.++++ -.=..+.+||++ +..+..+ ..++-.++ |+|.|+
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df---~egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF---PEGPRNTAFFNPHGN 324 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC---CCCCccceEECCCCC
Confidence 367888877444433333 47899999999999877653 344578999986 3444333 34566777 899999
Q ss_pred EEEEec---CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe------CCCcEEEEeCCCcc
Q 029743 94 RVITGS---ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS------HDSMLKLWDLDDIL 156 (188)
Q Consensus 94 ~l~~~~---~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~ 156 (188)
+++.++ .-|.|-+||+.+.+++..+... + -+-+.|+|||++++++. .|+.++||+.....
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-N--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccC-C--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 988776 4578999999998888888766 2 35579999999998887 37889999987543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-11 Score=83.82 Aligned_cols=151 Identities=13% Similarity=0.230 Sum_probs=112.9
Q ss_pred EEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc----ccccceeeeccCCceeE
Q 029743 11 LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 11 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~v~~ 86 (188)
++.+.+-.+-+-|+++|.. +.+. ..+.|.++.|...++.++.|..+|.|..+|++.. +.+...+. |...+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhh
Confidence 3344556677778777644 2343 5667889999988999999999999999999863 34444444 7888998
Q ss_pred E-e-ecCCCEEEEecCCCeEEEEecccCee---eeecccCCCc-ceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 87 L-L-KLDEDRVITGSENGLISLVGILPNRI---IQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 87 ~-~-~~~~~~l~~~~~d~~v~~~d~~~~~~---~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+ . .-++++|++.+-+|+|++||++.-++ +.++.+|... .-.-+..++....+++++.|...+||.++.+.....
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 8 4 44788999999999999999997666 8888887531 111234556677888899999999999998876666
Q ss_pred CCCcc
Q 029743 161 NNISQ 165 (188)
Q Consensus 161 ~~~~~ 165 (188)
++.+.
T Consensus 384 ipf~~ 388 (425)
T KOG2695|consen 384 IPFPY 388 (425)
T ss_pred cCCCC
Confidence 55544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-10 Score=78.50 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=96.8
Q ss_pred eecccCeEEE-EeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEE-EEecCCCeEEEEEeCCcccccceeeecc
Q 029743 3 FAADAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 3 ~s~~~~~l~~-~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|..|.-++++ ...++.|.+|++...+-...+.....++.++.|+|+|+.| .+...+-.|.+|.+.+. . ...+.- .
T Consensus 56 W~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~-~-~~~~~~-p 132 (447)
T KOG4497|consen 56 WKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-K-GYLLPH-P 132 (447)
T ss_pred eeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc-e-eEEecc-c
Confidence 4445444443 3567899999998888777888788899999999999655 56677889999999763 2 222222 3
Q ss_pred CCceeEE-eecCCCEEEEecCCC------------------------------------eEEEEecccCeeeeecccCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENG------------------------------------LISLVGILPNRIIQPIAEHSE 123 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~------------------------------------~v~~~d~~~~~~~~~~~~~~~ 123 (188)
+..+..+ |+|+|++.+..+... .+.+||---...+..+ +.+
T Consensus 133 K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~ 210 (447)
T KOG4497|consen 133 KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERG 210 (447)
T ss_pred ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eec
Confidence 3445555 789999877664321 1233332111122222 222
Q ss_pred cceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 124 YPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 124 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
-.+..++|+|.+++|+.|+.|+.+++-+
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhhc
Confidence 2588899999999999999999998855
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-09 Score=82.89 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=91.0
Q ss_pred eeecccCeEEEE-eCCCc--EEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC--eEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGT-SGDGT--LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~~--i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~ 75 (188)
+|+|||+.|+.. +.++. |+++|+.+++.. .+..+........|+|+|+.|+..+. ++ .|.++|+.. +. ...
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~ 344 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSR 344 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 699999988764 45554 778888877654 34445556678899999998766543 44 455556543 22 333
Q ss_pred eeeccCCceeEE-eecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC-CC--cEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DS--MLK 148 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~ 148 (188)
+.. ........ |+|+|++++..+. ++ .|.++|+.++... .+... . ......|+|||+.|+..+. ++ .++
T Consensus 345 Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~-~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 345 LTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-R-LDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred Eec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 322 22222233 8999998877654 33 4666788777643 33322 1 2235589999998876553 33 367
Q ss_pred EEeCCCc
Q 029743 149 LWDLDDI 155 (188)
Q Consensus 149 iwd~~~~ 155 (188)
+++....
T Consensus 421 ~~~~~G~ 427 (448)
T PRK04792 421 AVSIDGR 427 (448)
T ss_pred EEECCCC
Confidence 7776543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-09 Score=77.99 Aligned_cols=144 Identities=11% Similarity=0.093 Sum_probs=116.2
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCC-eEEEEEeCCcccccceeeeccCCce
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKDCSDRFVGLSPNSV 84 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~v 84 (188)
+|.+++..++ |...|.+...+-.++. ++...|.-..+..+++.++.|..|| .+-++|.+. ..++.+.+ .-+.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~-~lg~I 404 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEK-DLGNI 404 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeC-Cccce
Confidence 6888888877 8888888766654432 4677788888888888999999999 899999874 45556666 67788
Q ss_pred eEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC----cEEEEeCCCcc
Q 029743 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS----MLKLWDLDDIL 156 (188)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~ 156 (188)
.++ .+|+|++++++.....+.++|+.+++....-+...+ -|..+.|||+++++|-+--+| .|+++|+.+.+
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~-lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG-LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc-eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 888 799999999999999999999999987654444434 899999999999999776554 68999988754
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=81.05 Aligned_cols=152 Identities=19% Similarity=0.157 Sum_probs=118.3
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeecc---cccceEEEEEEe--------------------CCCEEEEecCCCe
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMK--------------------NGRKVVCGSQSGT 60 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~--------------------~~~~l~~~~~d~~ 60 (188)
.|-..++|....||.+++|+...++....+.. ..+..++.+|.- +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45677899999999999999998877665542 223444555531 1235777888999
Q ss_pred EEEEEeCCcccccceee-eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE
Q 029743 61 VLLYSWGYFKDCSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 61 i~~~d~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
|.+|++.. ++....+. +.|.+.+.++ ++.+-..|.+++.|+.+..|+...+..++....... .+.+++.+||+..|
T Consensus 82 v~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecC-CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCCEE
Confidence 99999975 45555554 3378889988 677888999999999999999999998888887766 78999999999999
Q ss_pred EEEeCCCcEEEEeCCCccCCC
Q 029743 139 GSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~~ 159 (188)
++++ +.|++||+++.+...
T Consensus 160 ~~as--~~ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVI 178 (541)
T ss_pred Eecc--ceEEEEEccCceEEE
Confidence 8775 679999999876443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-09 Score=81.92 Aligned_cols=147 Identities=17% Similarity=0.166 Sum_probs=93.5
Q ss_pred eeecccCeEEEE-eCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC--eEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~ 75 (188)
+|||||+.|+.. ..++ .|+++|+.++... .+..+........|+|+|+.|+..+. ++ .|.++++.. +. ...
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~ 325 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AER 325 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 699999988754 3444 6888899887654 34445556677899999988766543 33 566666654 22 233
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCC-C--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC---CcEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SMLK 148 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d-~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~ 148 (188)
+.. ........ ++|+|++++..... + .|.++|+.+++.. .+... . ......|+|||+.++..+.+ ..|.
T Consensus 326 lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-~-~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 326 VTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-S-LDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred eec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-C-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 332 22222233 79999998876643 3 5888998877643 33222 1 22356899999998766643 3467
Q ss_pred EEeCCCc
Q 029743 149 LWDLDDI 155 (188)
Q Consensus 149 iwd~~~~ 155 (188)
+.++...
T Consensus 402 ~~~~~g~ 408 (430)
T PRK00178 402 LVSINGR 408 (430)
T ss_pred EEECCCC
Confidence 7777543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=82.38 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=95.9
Q ss_pred CeeecccCeEEEE-eCC--CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC--eEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGT-SGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~-~~d--~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~ 74 (188)
++|+|||+.|+.. +.+ ..|++|++.++... .+..+........|+|+++.|+..+. .+ .|.++++.. ....
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~ 315 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVR 315 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEE
Confidence 3689999987654 333 35888998877654 33334445567789999998876554 33 566667653 2333
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCC---eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC---cE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i 147 (188)
.+.. +....... ++|+|++++....++ .|.+||+.++... .+... . ......|+|++++|+..+.++ .+
T Consensus 316 ~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~-~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 316 RLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-G-LDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred Eeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEeCCCcEEE
Confidence 4443 44444555 799999998887765 7889998875543 33322 2 345678999999988776553 45
Q ss_pred EEEeCCC
Q 029743 148 KLWDLDD 154 (188)
Q Consensus 148 ~iwd~~~ 154 (188)
++.+...
T Consensus 392 ~~~~~~g 398 (417)
T TIGR02800 392 GLVSTDG 398 (417)
T ss_pred EEEECCC
Confidence 5555443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-11 Score=81.21 Aligned_cols=97 Identities=15% Similarity=0.266 Sum_probs=80.4
Q ss_pred EEEeCCCcEEEEEcCC--Cce--eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 11 LGTSGDGTLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 11 ~~~~~d~~i~i~~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
++|+.+..+..|+++. +.+ ...+.-.+..|..+...||++.+++++.|+.|++|..++ .+++..++. |...+.+
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLky-Hsagvn~ 298 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKY-HSAGVNA 298 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhh-hhcceeE
Confidence 5566667788888764 222 122222345689999999999999999999999999987 688999999 9999999
Q ss_pred E-eecCCCEEEEecCCCeEEEEec
Q 029743 87 L-LKLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~v~~~d~ 109 (188)
+ |+|+..++++++.|++|.+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 9 8999999999999999999986
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-08 Score=74.76 Aligned_cols=152 Identities=14% Similarity=0.198 Sum_probs=97.5
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCc--ee--eeec-ccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeCCccccc
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNT--VQ--TRSE-FSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~ 73 (188)
+.|+|+++++++... ...|++|++.... .. ..+. ........++|+|+++++++. ..++.|.++++......+
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 368999999888754 4689999987644 31 1222 344567899999999988655 456789999987211111
Q ss_pred ce---eeec---c--CCceeEE-eecCCCEEEEec-CCCeEEEEeccc--Ce--eeeecccCCCcceeEEEeeCCCCEEE
Q 029743 74 DR---FVGL---S--PNSVDAL-LKLDEDRVITGS-ENGLISLVGILP--NR--IIQPIAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 74 ~~---~~~~---~--~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
.. +... . ......+ ++|+|++|+++. ..+.|.+|++.. +. .+..+... +...+.++++|+|++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEE
Confidence 11 1110 1 1135566 799999988766 567899999942 33 33333332 22478999999999998
Q ss_pred EEe-CCCcEEEEeCC
Q 029743 140 SIS-HDSMLKLWDLD 153 (188)
Q Consensus 140 ~~~-~d~~i~iwd~~ 153 (188)
++. .++.|.+|++.
T Consensus 308 Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 308 VANQDSNTVSVFDID 322 (345)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EEecCCCeEEEEEEe
Confidence 777 56789999774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-09 Score=73.24 Aligned_cols=146 Identities=15% Similarity=0.159 Sum_probs=101.9
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccc------cceEEEEEEeCCCEEEEecCCCeEEEEEeCC-cccccceeeeccC
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE------EELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSDRFVGLSP 81 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~ 81 (188)
.++-+...|.|.++..........+.+-. ....++.|++.+..++++..+|.+.+-+... --+.++.++. |.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He 165 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HE 165 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cc
Confidence 34555566777777655433222222211 1245778999999999999999988544322 1234457788 88
Q ss_pred CceeEE-ee-cCCCEEEEecCCCeEEEEecc-cCeeeee-cccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCcc
Q 029743 82 NSVDAL-LK-LDEDRVITGSENGLISLVGIL-PNRIIQP-IAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 82 ~~v~~~-~~-~~~~~l~~~~~d~~v~~~d~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
-..+.. |+ .+.+++++|+.|+.+.-||++ .++.+.. .+.|.. .|.++.-+| ...++++|+.|-.|++||+++..
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 888877 74 355799999999999999999 4555544 445544 588887776 56789999999999999999654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-08 Score=69.08 Aligned_cols=165 Identities=13% Similarity=0.200 Sum_probs=106.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecc-------cccceEEEEEEeCC------CEEEEecCCCeEEEEEeC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-------SEEELTSVVLMKNG------RKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~------~~l~~~~~d~~i~~~d~~ 67 (188)
++||||+.+||.+...|+|+++|+....+ ..++. ....|..+.|.+.. ..|++-...|.++-|-+.
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence 58999999999999999999999875333 33321 23456677775521 245666677777777653
Q ss_pred Cc----ccccce--eeeccCCceeEE-eecCCCEEEEecCC-C----------eEEEEecccCee---------------
Q 029743 68 YF----KDCSDR--FVGLSPNSVDAL-LKLDEDRVITGSEN-G----------LISLVGILPNRI--------------- 114 (188)
Q Consensus 68 ~~----~~~~~~--~~~~~~~~v~~~-~~~~~~~l~~~~~d-~----------~v~~~d~~~~~~--------------- 114 (188)
.+ ...... +.......|.++ ++|..++|++|+.. . -+..|.+-++.+
T Consensus 128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~ 207 (282)
T PF15492_consen 128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITAS 207 (282)
T ss_pred cccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccc
Confidence 21 111111 222134567777 79988888777531 1 245565422211
Q ss_pred ------eeec-------ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCCCccc
Q 029743 115 ------IQPI-------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQA 166 (188)
Q Consensus 115 ------~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 166 (188)
.+.+ .+.....|..|..+|||+.|++...+|.|.+|++.+.........+|.
T Consensus 208 ~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 208 SKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred ccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 0000 111122689999999999999999999999999999988877665543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-08 Score=73.42 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=102.0
Q ss_pred CeeecccCeEEEEeC----CCcEEEEEcCCC--ce--eeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSG----DGTLSVCNLRKN--TV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~----d~~i~i~~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~ 71 (188)
|+++|++++|++... .+.|..|.+... .+ +............++++|++++|+++.. ++.+.++++...+.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 468899999999876 468888887653 33 2233323455678999999999998875 78999999976433
Q ss_pred ccce---ee--e-------ccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCe--e--eeecccCCCcceeEEEeeC
Q 029743 72 CSDR---FV--G-------LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNR--I--IQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 72 ~~~~---~~--~-------~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~--~--~~~~~~~~~~~v~~~~~~~ 133 (188)
.... +. + .......++ ++|+|+++++.. ....|++|++.... . ...+....+...+.++|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 3222 11 0 012335566 899999888765 35579999987654 2 2223333333578999999
Q ss_pred CCCEEEEEe-CCCcEEEEeCC
Q 029743 134 DRKFLGSIS-HDSMLKLWDLD 153 (188)
Q Consensus 134 ~~~~l~~~~-~d~~i~iwd~~ 153 (188)
++++++... .++.|.++++.
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred CcCEEEEecCCCCcEEEEeec
Confidence 999886554 67889999888
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.8e-10 Score=77.28 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=75.5
Q ss_pred EEeCCCcEEEEEc--CCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-e
Q 029743 12 GTSGDGTLSVCNL--RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-L 88 (188)
Q Consensus 12 ~~~~d~~i~i~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~ 88 (188)
.|...+.|.+..+ ..-.++..+.+|.+.+.+++|.|....|+++..|..+.+||+.........+.+ |...+..+ .
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g-h~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG-HNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc-chhhhhhhhh
Confidence 3334444444333 233556677899999999999999999999999999999999754445555677 88888888 4
Q ss_pred ecCCCEEEEecCCCeEEEEec
Q 029743 89 KLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 89 ~~~~~~l~~~~~d~~v~~~d~ 109 (188)
.+--+.+++++.||.|.+|++
T Consensus 249 ~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhheeeeeccCCCeEEEEec
Confidence 566778999999999999998
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.8e-10 Score=77.81 Aligned_cols=136 Identities=9% Similarity=0.073 Sum_probs=99.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
.|||+|+++|+++.- .+.|-|..+-+..+.+.. -..|.-+.|..+..+++ ....++.|.+|++.+. +--..+.. .
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde-g 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE-G 90 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc-C
Confidence 699999999998875 777888777666555543 45678899998886655 4567889999999763 33334444 4
Q ss_pred CCceeEE-eecCCCEEE-EecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 81 PNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~-~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
...+..+ |+|+|+.++ +..-+-.|.+|.+.+.+.... .-. ...+..++|+|||++.+..+.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~p-K~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHP-KTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-ccc-ccCceeEEECCCCceeeeeec
Confidence 5566666 899997655 455688899999987765432 222 225788999999999887763
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=84.51 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=102.5
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeee--------cc------cccceEEEEEEeCCCEEE-EecCCCeEEEE
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS--------EF------SEEELTSVVLMKNGRKVV-CGSQSGTVLLY 64 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~--------~~------~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~ 64 (188)
++|+| ++..+++.+.++.|++|+..++...... .+ .-.....++++|+++.|+ +-..++.|++|
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 46788 4555566667789999998776432110 00 112456799999998554 55567899999
Q ss_pred EeCCcccccce------------eee-------ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc-----
Q 029743 65 SWGYFKDCSDR------------FVG-------LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA----- 119 (188)
Q Consensus 65 d~~~~~~~~~~------------~~~-------~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~----- 119 (188)
|+...+..+.. +-. ..-.....+ ++++|.++++-..++.|++||..++.......
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence 98753211100 000 000123455 68899988888899999999998766542221
Q ss_pred --------cCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 120 --------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 120 --------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+.-. ....++++++|+.+++-+.++.|++||+++...
T Consensus 848 ~~dG~~~~a~l~-~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 848 FKDGKALKAQLS-EPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCcccccccC-CceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1111 467899999999888888899999999987653
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-08 Score=76.49 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=95.6
Q ss_pred eeecccCe-EEEEeC---CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEE-ecCC--CeEEEEEeCCcccccc
Q 029743 2 TFAADAMK-LLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQS--GTVLLYSWGYFKDCSD 74 (188)
Q Consensus 2 ~~s~~~~~-l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~~~d~~~~~~~~~ 74 (188)
.|||||+. ++..+. ...|+++|+.+++...... ..+......|+|||+.++. .+.+ ..|.++++.. ...+
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~--g~~~ 270 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT--KTLT 270 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC--CcEE
Confidence 68999985 655443 3568999998887654433 4555677889999987654 4334 4677777754 2344
Q ss_pred eeeeccCC-ceeEEeecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC------
Q 029743 75 RFVGLSPN-SVDALLKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------ 144 (188)
Q Consensus 75 ~~~~~~~~-~v~~~~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------ 144 (188)
.+.. ... .....|+|||+.++..+. .+ .|++.|+.+++..+..... . ....|+|+|+.|+..+..
T Consensus 271 ~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 271 QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCCCCEEEEEEcCCCcccC
Confidence 4544 333 222338999998776653 23 5888888877654333221 1 234899999998766543
Q ss_pred ---CcEEEEeCCCccCC
Q 029743 145 ---SMLKLWDLDDILKG 158 (188)
Q Consensus 145 ---~~i~iwd~~~~~~~ 158 (188)
..|.+.|+.+....
T Consensus 346 ~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 346 KNTFNLYLISTNSDYIR 362 (419)
T ss_pred CCCcEEEEEECCCCCeE
Confidence 36788888776543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-08 Score=70.63 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=105.3
Q ss_pred CeeecccCeEEEEeCC---CcEEEEEcCC--Cceee--eecccccceEEEEEEeCCCEEEEecCC-CeEEEEEeCCcccc
Q 029743 1 MTFAADAMKLLGTSGD---GTLSVCNLRK--NTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDC 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---~~i~i~~~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~ 72 (188)
|+|+|+.+.|+++..+ +.|..|.+.. |+... .......+...+++++++++++++... |.|.++.++..+..
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 5789999999988654 6777776653 54422 222223344889999999999988764 78999999764433
Q ss_pred cce--eeeccCCc----------eeEE-eecCCCEEEEecC-CCeEEEEecccCeeeee--cccCCCcceeEEEeeCCCC
Q 029743 73 SDR--FVGLSPNS----------VDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 73 ~~~--~~~~~~~~----------v~~~-~~~~~~~l~~~~~-d~~v~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~ 136 (188)
... ... |.+. +... +.|++++|++... -.+|.+|++..|..... .....++..+.|.|+|+++
T Consensus 125 ~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k 203 (346)
T COG2706 125 QPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK 203 (346)
T ss_pred ccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc
Confidence 222 111 3333 5555 7999999988873 34699999987664322 1112233578999999999
Q ss_pred EEEEEe-CCCcEEEEeCCCc
Q 029743 137 FLGSIS-HDSMLKLWDLDDI 155 (188)
Q Consensus 137 ~l~~~~-~d~~i~iwd~~~~ 155 (188)
+..... .+++|.+|..+..
T Consensus 204 ~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEEEEeccCCEEEEEEEcCC
Confidence 886554 6899999998874
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-10 Score=80.72 Aligned_cols=98 Identities=9% Similarity=0.104 Sum_probs=75.8
Q ss_pred EEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEEeecCCCEEEEe
Q 029743 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITG 98 (188)
Q Consensus 19 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ 98 (188)
+.+|....+.. ..+-+|-..++.++|+||+++|+++..|..|++-.+...-..-..+-| |+..|..+.--+++.|+++
T Consensus 134 ~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG-H~eFVS~isl~~~~~LlS~ 211 (390)
T KOG3914|consen 134 FDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG-HKEFVSTISLTDNYLLLSG 211 (390)
T ss_pred eeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc-cHhheeeeeeccCceeeec
Confidence 33444333333 334479999999999999999999999999999888653333344568 9999998865666779999
Q ss_pred cCCCeEEEEecccCeeeeec
Q 029743 99 SENGLISLVGILPNRIIQPI 118 (188)
Q Consensus 99 ~~d~~v~~~d~~~~~~~~~~ 118 (188)
+.|++|++||+.+|+.+.++
T Consensus 212 sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCCcEEEEecccCCccccc
Confidence 99999999999999876544
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=94.85 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=116.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec---CCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+.|+.+|+.+..+..||.+.+|.+. .++....+.|....+.+.|-. ..+++++ .++++.+||.-......-.-.
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~ 2333 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHT 2333 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeee
Confidence 3688899999999999999999977 556666778988888888865 5666654 467999999754333333336
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
. |.+.++++ +-|..+++++|+.+|.|.+||++..+.+.+++. ++ ...++++++..|.|+||++....
T Consensus 2334 ~-H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2334 C-HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred e-cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccc
Confidence 7 89999999 799999999999999999999998777655543 44 56788999999999999999876
Q ss_pred CCCCCC
Q 029743 157 KGSGNN 162 (188)
Q Consensus 157 ~~~~~~ 162 (188)
.....+
T Consensus 2402 ll~~~p 2407 (2439)
T KOG1064|consen 2402 LLHTFP 2407 (2439)
T ss_pred hhhcCc
Confidence 555444
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.5e-10 Score=55.00 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=36.0
Q ss_pred ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEE
Q 029743 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (188)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 65 (188)
+++..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.1e-10 Score=54.60 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=35.9
Q ss_pred CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 112 NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 112 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
++++.++.+|.+ .|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 467888999976 899999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-10 Score=82.92 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=112.4
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCc------eeeeec------ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNT------VQTRSE------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~------~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 68 (188)
+..| +...+++++.|-.+++||.+.-. .+..+. ...-.|++++++.++.-|.++-.|-.|+++.-..
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 3455 34578999999999999976421 112221 1234689999998777666667777899985432
Q ss_pred c-c----------cccce-eeeccCC--ceeEE-e-ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEee
Q 029743 69 F-K----------DCSDR-FVGLSPN--SVDAL-L-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS 132 (188)
Q Consensus 69 ~-~----------~~~~~-~~~~~~~--~v~~~-~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 132 (188)
. + ..+.. +++ |.. .|..+ | -|...|+++|+.-|.|.+|+-.+++.++.+.+... -|+||.=+
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKG-HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpH 445 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKG-HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPH 445 (559)
T ss_pred ccCCCCCCCcchhhccchhhcc-cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCC
Confidence 1 1 12222 566 654 36667 4 78999999999999999999999999999988866 79999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCC
Q 029743 133 HDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 133 ~~~~~l~~~~~d~~i~iwd~~ 153 (188)
|--..||+.+-|..|+||...
T Consensus 446 P~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred CCCchhhccCCccceeeecCC
Confidence 999999999999999999863
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=79.47 Aligned_cols=143 Identities=12% Similarity=0.151 Sum_probs=106.3
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC---------CCeEEEEEeCCcccccce
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~ 75 (188)
.+++++.+|...|+|.+-|..+-+.++++.+|.+.+..+.. .|+.|++++. |.-|++||+++- +.+.-
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~P 261 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSP 261 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh-hccCC
Confidence 46789999999999999999999999999999999888665 7889999876 446889999863 33333
Q ss_pred eeeccCCceeEE-eecC-CCEEEEecCCCeEEEEeccc-Cee---eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-NRI---IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~-~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
+.- +..+ .-+ |+|. ...+++++..|...+.|..+ ..+ +..+... +..+..++++++++.|+.+..+|.|.+
T Consensus 262 I~~-~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 262 IQF-PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN-GSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred ccc-ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC-CCcceeEEecCCCceEEEecccCcEee
Confidence 333 3333 233 6774 45778888889999988332 121 2222222 224899999999999999999999999
Q ss_pred EeCC
Q 029743 150 WDLD 153 (188)
Q Consensus 150 wd~~ 153 (188)
|.-.
T Consensus 339 wa~~ 342 (1118)
T KOG1275|consen 339 WADR 342 (1118)
T ss_pred ecCC
Confidence 9833
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=80.06 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=120.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCcccc--cce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDC--SDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~--~~~ 75 (188)
|.|+..|..|++|+.|..|.+||...+.....+. +|...|....|-|. .+.+++++.||++++-.+...+.+ ...
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r 227 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR 227 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence 4578889999999999999999999887766665 89999999999884 478999999999999887543322 233
Q ss_pred eeeccCCceeEE-eecCC-CEEEEecCCCeEEEEecccCeeeeec---ccCCC--cceeEEEeeCCCC-EEEEEeCCCcE
Q 029743 76 FVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPI---AEHSE--YPIESLALSHDRK-FLGSISHDSML 147 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~v~~~d~~~~~~~~~~---~~~~~--~~v~~~~~~~~~~-~l~~~~~d~~i 147 (188)
+.. |.+++..+ .-|+. ..|.+++.|+.+.-+|++.+.+...+ ..+.. -..+.++..|... .+++++.|..+
T Consensus 228 l~~-h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~ 306 (559)
T KOG1334|consen 228 LAP-HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFA 306 (559)
T ss_pred ccc-ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhh
Confidence 455 88888888 45644 46889999999999999876644333 22211 1366888888554 78999999999
Q ss_pred EEEeCCCccCC
Q 029743 148 KLWDLDDILKG 158 (188)
Q Consensus 148 ~iwd~~~~~~~ 158 (188)
++||.+.....
T Consensus 307 RvYD~R~~~~e 317 (559)
T KOG1334|consen 307 RVYDQRRIDKE 317 (559)
T ss_pred hhhcccchhhc
Confidence 99998876544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-07 Score=66.61 Aligned_cols=154 Identities=11% Similarity=0.131 Sum_probs=103.6
Q ss_pred eeecccCeEEEEeC-CCcEEEEEcCCCceeeeec---ccccceEEEEEEeCCCEEEEec-CCCeEEEEEeCCccccccee
Q 029743 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~ 76 (188)
.|.|++++|++.+. -..|.+|++..|.....-+ ........|.|+|++++....+ -+++|.+|..+.....+..+
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 47899999998865 3579999998775432111 3445678999999999887654 47899999997532222222
Q ss_pred ee--------ccCCceeEE-eecCCCEEEEecC-CCeEEEEeccc--Ceee--eecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 77 VG--------LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILP--NRII--QPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 77 ~~--------~~~~~v~~~-~~~~~~~l~~~~~-d~~v~~~d~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+. ........+ .+++|++|+++.. ...|.+|.+.. ++.. .....+ +...+.+.|++.+++|+++.
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCCCCEEEEEc
Confidence 21 012334555 6999999998874 44688887764 3221 112222 21368899999999998888
Q ss_pred CC-CcEEEEeCCCcc
Q 029743 143 HD-SMLKLWDLDDIL 156 (188)
Q Consensus 143 ~d-~~i~iwd~~~~~ 156 (188)
.+ ..|.+|.+....
T Consensus 310 q~sd~i~vf~~d~~T 324 (346)
T COG2706 310 QKSDNITVFERDKET 324 (346)
T ss_pred cCCCcEEEEEEcCCC
Confidence 55 579999877544
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=73.38 Aligned_cols=146 Identities=17% Similarity=0.208 Sum_probs=93.1
Q ss_pred cCeEEEEeCCCcEEEEEcCCCce-eeeecccccceEEEEEEeCCCEEEEecC-----CCeEEEEEeCCcccccceeeecc
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++-+++++.|+.+.+++.+.-.. ...+..-.....+.+....++.+.++.- -+..+.|+++..+...-... .
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~ 178 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--A 178 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc--c
Confidence 56688899999999998765211 1111111111122233334444444321 23566777754222221112 2
Q ss_pred CCceeEEe-ec-CCCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCc
Q 029743 81 PNSVDALL-KL-DEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 81 ~~~v~~~~-~~-~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
...+.+++ +| +...+++|+.+|.+.+||.+... +...+..|+. +++.+.|+| ++..|.++++||.+-.||..+.
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~-~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA-EIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh-hhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 23377774 67 45577888999999999998754 5566788865 899999999 6678999999999999998853
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-09 Score=75.20 Aligned_cols=127 Identities=18% Similarity=0.301 Sum_probs=97.3
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCC-----ceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccc---c
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKN-----TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDC---S 73 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~---~ 73 (188)
|...+++++.|.++|.|..+|++.+ .+...+ -|.+.|+++..-. ++++|++.+.+|.|++||++.- ++ +
T Consensus 260 f~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V 337 (425)
T KOG2695|consen 260 FAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSV 337 (425)
T ss_pred hcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccce
Confidence 4556789999999999999999753 333344 4889999998766 7889999999999999999863 44 6
Q ss_pred ceeeeccCCceeEE-e--ecCCCEEEEecCCCeEEEEecccCeeeeecccCCC---cceeEEEee
Q 029743 74 DRFVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE---YPIESLALS 132 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~--~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~~ 132 (188)
+.+.+ |-....-+ + .+....+++++.|...++|.++.+..+.++..... ..+.+++|.
T Consensus 338 ~qYeG-HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 338 MQYEG-HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeeec-ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 77788 76555444 3 67778888999999999999999998888765432 134455554
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-09 Score=78.35 Aligned_cols=154 Identities=10% Similarity=0.125 Sum_probs=112.2
Q ss_pred ccCeEEEEeCCCcEEEEEcCC-------CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee-e
Q 029743 6 DAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-V 77 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~ 77 (188)
+.+-+++++.|.+|++|.++. ..+..+.+.|..+|..+.|-.+-++++++ |+-|++||.-. ++.+... .
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFi-gr~Laq~~d 822 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFI-GRLLAQMED 822 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccc-cchhHhhhc
Confidence 456789999999999999864 23556677899999999999888887665 78899999743 3444422 1
Q ss_pred ec---cCCceeEEeecCCCEEEEe-cCCCeEEEEecccCeeeeecc-----cCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 78 GL---SPNSVDALLKLDEDRVITG-SENGLISLVGILPNRIIQPIA-----EHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 78 ~~---~~~~v~~~~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
.- ..+.+.|+-+-+...++.| +...+|+++|.+.++-...++ +. .+.+.+++..+.|++++.+-..|.|.
T Consensus 823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P-na~~R~iaVa~~GN~lAa~LSnGci~ 901 (1034)
T KOG4190|consen 823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP-NALTRAIAVADKGNKLAAALSNGCIA 901 (1034)
T ss_pred CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC-chheeEEEeccCcchhhHHhcCCcEE
Confidence 10 1233444434455666666 578899999999876444432 33 23688999999999999999999999
Q ss_pred EEeCCCccCCCCCCC
Q 029743 149 LWDLDDILKGSGNNI 163 (188)
Q Consensus 149 iwd~~~~~~~~~~~~ 163 (188)
+.|.+++......+.
T Consensus 902 ~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 902 ILDARNGKVINSWRP 916 (1034)
T ss_pred EEecCCCceeccCCc
Confidence 999999886554443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-07 Score=67.11 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=103.0
Q ss_pred CeeecccCeEEEEe-C-CCcEEEEEcCCCceeeeeccccc-------------------------------ceEEE----
Q 029743 1 MTFAADAMKLLGTS-G-DGTLSVCNLRKNTVQTRSEFSEE-------------------------------ELTSV---- 43 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~-d~~i~i~~~~~~~~~~~~~~~~~-------------------------------~v~~~---- 43 (188)
++++|||++|+... . +..|.+.|+.+++.+..+.-..+ .+...
T Consensus 110 ~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 110 TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 36899999999876 3 68899999988765553321000 00011
Q ss_pred ----------EEEe-CCCEEEEecCCCeEEEEEeCCcc----cccceeee------ccCCceeEE-eecCCCEEEEec--
Q 029743 44 ----------VLMK-NGRKVVCGSQSGTVLLYSWGYFK----DCSDRFVG------LSPNSVDAL-LKLDEDRVITGS-- 99 (188)
Q Consensus 44 ----------~~~~-~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~------~~~~~v~~~-~~~~~~~l~~~~-- 99 (188)
.+.+ +|+.+++... |+|.+.|+.... .....+.. .......-+ ++|+++++++..
T Consensus 190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 1233 6666666666 889999864321 11111111 011122235 699999888743
Q ss_pred --------CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEEEe-CCCcEEEEeCCCccCCCCC
Q 029743 100 --------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 100 --------~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~~~ 161 (188)
..+.|.++|..+++.+..+... . .+..++++||++ +|++.. .++.|.++|+.+.+.....
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGKRLRKIELG-H-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CccccccCCCCEEEEEECCCCeEEEEEeCC-C-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 2257999999999999888754 2 689999999999 777666 6788999999988765443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-09 Score=89.29 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=118.1
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 82 (188)
+|...+.++|+.||.+++|....++.+..+. ..+..|+.+.|+.+|+.+.++..||.+.+|.+. ..+....+. |..
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~~s~qc-hnk 2293 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPYTSWQC-HNK 2293 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Ccceecccc-CCc
Confidence 4566788999999999999998887776665 334889999999999999999999999999986 455666666 666
Q ss_pred ceeEE-eecCCCEEEEec---CCCeEEEEeccc--C-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 83 SVDAL-LKLDEDRVITGS---ENGLISLVGILP--N-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~---~d~~v~~~d~~~--~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
..... |-. ..+++++ .++.+.+||.-- . .++. ..|.+ .++++++.|..+.|++|+.+|.|.+||++..
T Consensus 2294 ~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2294 ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred cccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 66655 432 4555554 467899999542 2 2333 66755 6999999999999999999999999999988
Q ss_pred cCCCCCC
Q 029743 156 LKGSGNN 162 (188)
Q Consensus 156 ~~~~~~~ 162 (188)
+.++..+
T Consensus 2369 ql~h~~~ 2375 (2439)
T KOG1064|consen 2369 QLRHTFQ 2375 (2439)
T ss_pred HHHHHhh
Confidence 7766554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-09 Score=80.71 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=116.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC---------------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEE
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---------------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 65 (188)
+.|+.+..++++|+.||.++|..+.+. ..-+++.+|...|.-+.|+.+.+.|-++..+|.|.+|-
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence 368888999999999999999977542 12245679999999999999999999999999999999
Q ss_pred eCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeee-eecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 66 WGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
+-.+.-+-..+..+.++.|.++ |+.+|+.++....||.|.+=.+...+.- +.+.+. ....+.|++|.+.++.+-.
T Consensus 100 lykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~---~l~hv~ws~D~~~~Lf~~a 176 (1189)
T KOG2041|consen 100 LYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ---LLAHVLWSEDLEQALFKKA 176 (1189)
T ss_pred eecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh---eccceeecccHHHHHhhhc
Confidence 8654333333433256778888 8999999999999999877766543321 223332 3557889999988888888
Q ss_pred CCcEEEEeCCCc
Q 029743 144 DSMLKLWDLDDI 155 (188)
Q Consensus 144 d~~i~iwd~~~~ 155 (188)
.|.+.+||.+..
T Consensus 177 nge~hlydnqgn 188 (1189)
T KOG2041|consen 177 NGETHLYDNQGN 188 (1189)
T ss_pred CCcEEEeccccc
Confidence 899999987653
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=72.37 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=103.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCC-ce--eeeec-----ccccceEEEEEEeC-CCEEEEecCCCeEEEEEeCCcccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKN-TV--QTRSE-----FSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~-~~--~~~~~-----~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
.++.|+..++++ .|-.|.+|+++-- +. +--++ ....-|++..|+|. .+.++.++..|+|++.|++...-|
T Consensus 171 S~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 171 SVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred eecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence 566778787775 4578999998632 11 11222 22345889999994 477888999999999999843211
Q ss_pred cc---ee------------eeccCCceeEE-eecCCCEEEEecCCCeEEEEecc-cCeeeeecccCCC------------
Q 029743 73 SD---RF------------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSE------------ 123 (188)
Q Consensus 73 ~~---~~------------~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~-~~~~~~~~~~~~~------------ 123 (188)
.. .+ .+ --..|..+ |+++|+|+++-.. -+|++||+. ..+++.+++.|..
T Consensus 250 d~hsKlfEepedp~~rsffse-iIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSE-IISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred cchhhhhccccCCcchhhHHH-HhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 11 11 11 22346667 8999999988654 479999994 4556666554421
Q ss_pred --cceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 124 --YPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 124 --~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+.-..++|+.++.++++|+..+.+++|++..+..
T Consensus 328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred chhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 1234578999999999999999999999665543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-07 Score=69.96 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=100.7
Q ss_pred eecccCeEEEEeCCC-cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 3 FAADAMKLLGTSGDG-TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
+.-+++-++.|..|| .+-|+|..+++.. .+...-+.|.++..+++|+.++.+.....+.+.|++++ .....-+. ..
T Consensus 367 ~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng-nv~~idkS-~~ 443 (668)
T COG4946 367 IQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG-NVRLIDKS-EY 443 (668)
T ss_pred EccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC-CeeEeccc-cc
Confidence 344566788888888 8999998888764 44445678999999999999999999999999999863 33222233 45
Q ss_pred CceeEE-eecCCCEEEEecCCC----eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 82 NSVDAL-LKLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~----~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+-++.. |+|+++.++-+-.+| .|+++|+..++....-. ... .-.+-+|.|++++|.--+
T Consensus 444 ~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 444 GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc-cccCcccCCCCcEEEEEe
Confidence 667777 899999999887665 48999998877654332 222 345678999999886443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-09 Score=70.75 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=61.4
Q ss_pred cceEEEEEEeC-CCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecc
Q 029743 38 EELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGIL 110 (188)
Q Consensus 38 ~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~ 110 (188)
..|.+++-+|. .+.+++|+.||.+-+||+++...+...+.. |+.++..+ |+| ++..|++++.||.+..||..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a-hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA-HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH-hhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 34889998884 466778889999999999986666777777 99999999 988 77899999999999999975
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.8e-08 Score=71.72 Aligned_cols=148 Identities=13% Similarity=0.082 Sum_probs=92.0
Q ss_pred eeecccCeEEEEeC---CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC--eEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~ 75 (188)
.|||||+.|+.... +..|+++++.++... .+..+........|+|||+.|+..+. .+ .|.+.|+.. +.. +.
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~r 315 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQ 315 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-Ee
Confidence 58999988765532 356888888777643 34333333456689999987776553 33 566667654 222 22
Q ss_pred eeeccCCceeEEeecCCCEEEEecCC---------CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC--
Q 029743 76 FVGLSPNSVDALLKLDEDRVITGSEN---------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-- 144 (188)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~d---------~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 144 (188)
+.. .... ...++|+|++++..... ..|.+.|+.++... .+... . ......|+|||+.|+....+
T Consensus 316 lt~-~g~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~-~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 316 VVF-HGKN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-G-VNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred Ccc-CCCc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-C-CcCCeEECCCCCEEEEEEccCC
Confidence 222 1111 22489999988766543 36888898877643 34333 2 23468899999988765533
Q ss_pred -CcEEEEeCCCccC
Q 029743 145 -SMLKLWDLDDILK 157 (188)
Q Consensus 145 -~~i~iwd~~~~~~ 157 (188)
..+.+.++.....
T Consensus 391 ~~~L~~~~l~g~~~ 404 (419)
T PRK04043 391 QSALGIIRLNYNKS 404 (419)
T ss_pred cEEEEEEecCCCee
Confidence 3477777766433
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-07 Score=64.46 Aligned_cols=149 Identities=10% Similarity=-0.018 Sum_probs=101.8
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec-cCCceeEE-
Q 029743 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-SPNSVDAL- 87 (188)
Q Consensus 10 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~v~~~- 87 (188)
+..++.|.++++.++..+.....+....-.+.++.++++++++++.+....|-.|.++..++.+...... ....-.+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 4556777888888776544332222111237899999999999999999999999998755554442220 12222334
Q ss_pred eecCCCEEEEecCCCeEEEEecccCe-eee----ecccCCCcceeEEEeeCCCC--EEEEEeCCCcEEEEeCCCccCCC
Q 029743 88 LKLDEDRVITGSENGLISLVGILPNR-IIQ----PIAEHSEYPIESLALSHDRK--FLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 88 ~~~~~~~l~~~~~d~~v~~~d~~~~~-~~~----~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
|+.....+|++..||++.|||++... +.. +-..|.+ .+..+.|++-|. .|...-.-+.+.+-|+++....+
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG-a~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG-AFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC-ceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 78888899999999999999998643 222 2233544 899999998653 44445456789999999876443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-08 Score=69.39 Aligned_cols=154 Identities=12% Similarity=0.195 Sum_probs=112.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCC----CceeeeecccccceEEEEEEeCCCEEEEecCCCeEE---------------
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVL--------------- 62 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~--------------- 62 (188)
.+.++.+.|++|-..|++.-+.+.. ...++....|..++..+-|+...+.+++.+.|..+.
T Consensus 75 ~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 75 EYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred eeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe
Confidence 4667778889998889998887653 233444457888888888877666666666554322
Q ss_pred ------------------------EEEeCC-cccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe-ee
Q 029743 63 ------------------------LYSWGY-FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-II 115 (188)
Q Consensus 63 ------------------------~~d~~~-~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~-~~ 115 (188)
+..+.. .-..+.++.+ |...+.++ |.+..+++.+|..|..+.+||+-..+ ..
T Consensus 155 ~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~ 233 (404)
T KOG1409|consen 155 ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA 233 (404)
T ss_pred eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCcEEEeccccCceEEEeccCCccee
Confidence 111110 1133445567 88889999 78888999999999999999997544 33
Q ss_pred eecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 116 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
..+.+|.+ .|..+...+--+.|.+++.||.|.+|+++....
T Consensus 234 ~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 234 YELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred eeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 45677766 799888888888999999999999999987654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-07 Score=72.25 Aligned_cols=148 Identities=14% Similarity=0.118 Sum_probs=112.7
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC------------CEEEEecCCCeEEEEEeCCc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG------------RKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~i~~~d~~~~ 69 (188)
.|+|.| ++|.|+. ..|.+.|..+-+.++.+.-|...|+.+.|.|-. -.|+++...|.|.+||...
T Consensus 22 Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~- 98 (1062)
T KOG1912|consen 22 DWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL- 98 (1062)
T ss_pred ccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh-
Confidence 577766 6666554 778899999999999999999999999998732 2467777889999999976
Q ss_pred ccccceeeeccCCceeEE-e---ecCC-CEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEEeC
Q 029743 70 KDCSDRFVGLSPNSVDAL-L---KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISH 143 (188)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~---~~~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 143 (188)
...+..+.. +..++..+ | -++. ..|++-.....+.+|+..+|+....+..... ...++.+.| |.+.+..-+.
T Consensus 99 ~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 99 ASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred hhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCCCCcceEEEEcc
Confidence 455555666 77778777 4 2344 4666777778999999999999888766545 677889988 6677777777
Q ss_pred CCcEEEEeCCC
Q 029743 144 DSMLKLWDLDD 154 (188)
Q Consensus 144 d~~i~iwd~~~ 154 (188)
.|.+.+-+.-.
T Consensus 177 ~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 177 KGFVLSCKDLG 187 (1062)
T ss_pred CceEEEEeccC
Confidence 78777766543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.2e-09 Score=79.47 Aligned_cols=147 Identities=13% Similarity=0.125 Sum_probs=108.3
Q ss_pred EEEeCCCcEEEEEcCC---CceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 11 LGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 11 ~~~~~d~~i~i~~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
++......-.+|++.. ......+.+|...++.+.|+|+. ..+++++-|..+..||++....++-.... -......
T Consensus 85 iVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asq 163 (1081)
T KOG0309|consen 85 IVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQ 163 (1081)
T ss_pred EEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec-ccccCce
Confidence 3334445667888864 23445566999999999999954 68899999999999999876666666655 4445566
Q ss_pred E-eecCCCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 87 L-LKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
+ |+.....+.+.+..+.|.+||++.|. ++..+++|-. .|+.+.|.. -...+.+.+.|++|+.||..+...+.
T Consensus 164 Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 164 VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred eeecccCcchhhhccCCceEEEeccCCCcceEEecccce-eeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence 6 76544455556677789999998754 7777888755 788888865 23467788999999999988765443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-07 Score=75.99 Aligned_cols=157 Identities=11% Similarity=0.109 Sum_probs=108.3
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCC--c-----eeeeec--ccccceEEEEEEe-CC-CEEEEecCCCeEEEEEeCCcc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKN--T-----VQTRSE--FSEEELTSVVLMK-NG-RKVVCGSQSGTVLLYSWGYFK 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~--~-----~~~~~~--~~~~~v~~~~~~~-~~-~~l~~~~~d~~i~~~d~~~~~ 70 (188)
.+.+.++.+|+++.||.|++..+... . ..+... ....-|..-++.. .+ ..++.+...+.|..||+++.
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~- 1183 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR- 1183 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-
Confidence 34567899999999999999988652 1 111111 1222233333433 22 36788888899999999863
Q ss_pred ccccee--eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC---EEEEEe--
Q 029743 71 DCSDRF--VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK---FLGSIS-- 142 (188)
Q Consensus 71 ~~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~-- 142 (188)
.....+ .. ..+.++++ .+|.+..++.|+..|.+.+||++=+.++.........++..+..+|-.+ ..++++
T Consensus 1184 ~~~w~lk~~~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1184 HDAWRLKNQL-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred hhHHhhhcCc-cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence 322222 22 34678888 6999999999999999999999988888777655445788888887443 444444
Q ss_pred CCCcEEEEeCCCccCCCC
Q 029743 143 HDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 143 ~d~~i~iwd~~~~~~~~~ 160 (188)
..+.|.+|++.++.....
T Consensus 1263 ~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1263 SNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred CCCceeeeecccCcceEE
Confidence 468899999998865443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-07 Score=66.53 Aligned_cols=151 Identities=14% Similarity=0.209 Sum_probs=99.0
Q ss_pred eeeccc--CeEEEEeCCCcEEEEEcCCCce-----------------------------------eeee-cccccceEEE
Q 029743 2 TFAADA--MKLLGTSGDGTLSVCNLRKNTV-----------------------------------QTRS-EFSEEELTSV 43 (188)
Q Consensus 2 ~~s~~~--~~l~~~~~d~~i~i~~~~~~~~-----------------------------------~~~~-~~~~~~v~~~ 43 (188)
.|.+++ ..++..+.|.+|++|-+..... .+.+ .+|..-|.++
T Consensus 91 rw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 91 RWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSI 170 (433)
T ss_pred eecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeee
Confidence 345543 3466668899999998753210 0111 1477778999
Q ss_pred EEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec------cCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeee
Q 029743 44 VLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL------SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRII 115 (188)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~ 115 (188)
.++.|+..++++. |-.|.+|++....+......-. -...|++. |+| ....++..+..|+|++.|++.....
T Consensus 171 S~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 171 SVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred eecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence 9999988887765 5679999987543433333210 12346777 888 4567888889999999999843211
Q ss_pred ----eecccCC-----------CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 116 ----QPIAEHS-----------EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 116 ----~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
..+.... -..|..+.|+++|+++++-. =-+|++||++.
T Consensus 250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nm 302 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNM 302 (433)
T ss_pred cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccc
Confidence 1111100 02588999999999998653 36899999953
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.8e-07 Score=61.45 Aligned_cols=147 Identities=12% Similarity=0.030 Sum_probs=97.9
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCcee-eeecccccceEEEEEE-eCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLM-KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
...+||.|+..|...+|.+.+.+.. +....|...|+-+.=. -..--+..++.|.++++.++... .....+ |...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~-s~~~~~---h~~~ 158 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD-SNKFAV---HNQN 158 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecC-ccccee---eccc
Confidence 3457899989999999999865432 2333343333222111 11234667888999999998642 222222 3222
Q ss_pred --eeEE-eecCCCEEEEecCCCeEEEEecccCe--eeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 84 --VDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 84 --v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~--~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+.++ ++++++++++.+....|..|.+.... .+... ....+ .-.+..|+.....+|++..||++.|||++....
T Consensus 159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D-~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD-HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC-CceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 4555 69999999999999999999887432 23322 22223 346788999999999999999999999997653
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=70.70 Aligned_cols=124 Identities=10% Similarity=0.119 Sum_probs=87.2
Q ss_pred CeeecccCeEEEE--eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC---CeEEEEEeCCcccccce
Q 029743 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~--~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~ 75 (188)
+.|+|+++-+++. ..=..+.|+|++ +.++..+. .++-.++-|+|.|++|+.++.+ |.+.+||+.+ ..++..
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccc
Confidence 3688988776654 345678889866 45555543 5677899999999999987765 7899999986 566666
Q ss_pred eeeccCCceeEEeecCCCEEEEecC------CCeEEEEecccCeeeeecccCCCcceeEEEeeC
Q 029743 76 FVGLSPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~------d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 133 (188)
+.. .....+-|+|||+++++++. |+.++||+. +|..+....-.+ ..+.+.|-|
T Consensus 352 ~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s--EL~qv~W~P 410 (566)
T KOG2315|consen 352 FKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS--ELLQVEWRP 410 (566)
T ss_pred ccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH--hHhheeeee
Confidence 553 33334448999999998874 677999996 466554433221 256667765
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-06 Score=60.92 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=105.0
Q ss_pred eeecccCeEEEEeC-----CCcEEEEEcC-CCceeeeecccccceEEEEEEeCCCEEEEecC------------------
Q 029743 2 TFAADAMKLLGTSG-----DGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------------------ 57 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-----d~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------ 57 (188)
+|||||++|++.-. .|.|-|||.. .-+.+..+..|.-....+.+.|+|+.|+++..
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 69999999998743 4789999998 55777788877777889999999988887642
Q ss_pred CCeEEEEEeCCcccccce--e--eeccCCceeEE-eecCCCEEEEecCCCe-------EEEEecccCeeeeeccc-----
Q 029743 58 SGTVLLYSWGYFKDCSDR--F--VGLSPNSVDAL-LKLDEDRVITGSENGL-------ISLVGILPNRIIQPIAE----- 120 (188)
Q Consensus 58 d~~i~~~d~~~~~~~~~~--~--~~~~~~~v~~~-~~~~~~~l~~~~~d~~-------v~~~d~~~~~~~~~~~~----- 120 (188)
+.++.+.|..+ +..+.. + .- |...++.+ +.++|..++.....|. |-+++ .+..+..+..
T Consensus 137 ~psL~~ld~~s-G~ll~q~~Lp~~~-~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 137 QPSLVYLDARS-GALLEQVELPPDL-HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQW 212 (305)
T ss_pred CCceEEEecCC-CceeeeeecCccc-cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHH
Confidence 12344444443 343333 2 22 44567777 5777776666554432 33333 2332322222
Q ss_pred --CCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCCccCCCCCCCcc
Q 029743 121 --HSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKGSGNNISQ 165 (188)
Q Consensus 121 --~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~ 165 (188)
..+ -+-+|++++++..+++.+ ..+.+.+||..++.......-.+
T Consensus 213 ~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D 259 (305)
T PF07433_consen 213 RRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD 259 (305)
T ss_pred HhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc
Confidence 223 488999999998886555 67899999999987665554444
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=71.21 Aligned_cols=136 Identities=11% Similarity=0.064 Sum_probs=95.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-----------CCeEEEEEeCCc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-----------SGTVLLYSWGYF 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~ 69 (188)
+.|||.|.||++-...| |.+|--.+-..++.+. | ..|.-+.|||+.++|++-+. ...+.|||+.+
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t- 291 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT- 291 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-
Confidence 46999999999987755 7889866544444443 4 46899999999999998553 25799999987
Q ss_pred ccccceeee-ccCCceeEE--eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 70 KDCSDRFVG-LSPNSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 70 ~~~~~~~~~-~~~~~v~~~--~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+...+.+.. .....+..+ ||.|++++|.-.. ..|.||+..+..++..-.-.-. .|....|+|.+..||--.
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~-gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKIS-GIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCc-cccCcccCCCcceEEEEc
Confidence 566666543 023345566 5899999987766 4688998766443322111112 588889999988887443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.9e-07 Score=69.60 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=100.0
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
++.++.|+.+|.|++++.+..- .+...|... ...|.++++|+.||.|.+..+.+. +....+. ...++.+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~-~~~~~~d--f~rpiks 117 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD-DEITQYD--FKRPIKS 117 (846)
T ss_pred cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCC-ccceeEe--cCCccee
Confidence 6789999999999999976433 333335443 568999999999999999998764 4444444 3557777
Q ss_pred E-eecC-----CCEEEEecCCCeEEEEeccc-Ceeee-ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 87 L-LKLD-----EDRVITGSENGLISLVGILP-NRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 87 ~-~~~~-----~~~l~~~~~d~~v~~~d~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
+ ++|+ .+.+++|+..| +.++.-+- +.... .+....+ +|.++.|. |.++|-++.+| |+|||+.+....
T Consensus 118 ial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG-~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l 192 (846)
T KOG2066|consen 118 IALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG-PIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRL 192 (846)
T ss_pred EEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCcc-ceEEEEec--CcEEEEecCCC-cEEEecccccee
Confidence 7 6776 56789999988 77776431 11111 2333434 89999995 77787776555 899999988766
Q ss_pred CCCCCcc
Q 029743 159 SGNNISQ 165 (188)
Q Consensus 159 ~~~~~~~ 165 (188)
..++.+.
T Consensus 193 ~~i~~p~ 199 (846)
T KOG2066|consen 193 TNIPPPS 199 (846)
T ss_pred eccCCCC
Confidence 6555443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-06 Score=69.91 Aligned_cols=153 Identities=14% Similarity=0.064 Sum_probs=96.7
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCceeeeecc--c---------------ccceEEEEEEe-CCCEEEEecCCCeE
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEF--S---------------EEELTSVVLMK-NGRKVVCGSQSGTV 61 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~--~---------------~~~v~~~~~~~-~~~~l~~~~~d~~i 61 (188)
|+++++++.|+++.. .+.|+++|..++.. .++.+ . -.....++++| ++..+++...++.|
T Consensus 629 Iavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I 707 (1057)
T PLN02919 629 LAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQI 707 (1057)
T ss_pred EEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeE
Confidence 457777777766654 46788889876543 22211 0 12346899999 55666777778899
Q ss_pred EEEEeCCcccccceeeec--------------cCCceeEE-eecCCCEE-EEecCCCeEEEEecccCeeeeec-------
Q 029743 62 LLYSWGYFKDCSDRFVGL--------------SPNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPI------- 118 (188)
Q Consensus 62 ~~~d~~~~~~~~~~~~~~--------------~~~~v~~~-~~~~~~~l-~~~~~d~~v~~~d~~~~~~~~~~------- 118 (188)
++||.... . +..+.+. .-.....+ ++|+++.| ++-..++.|++||+.++......
T Consensus 708 ~v~d~~~g-~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 708 WEYNISDG-V-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred EEEECCCC-e-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 99998642 1 1222110 01123456 68998854 45567789999999865432110
Q ss_pred ------ccCC-------CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 119 ------AEHS-------EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 119 ------~~~~-------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
.... -....+++++++|..+++-..++.|++||..+..
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 0000 0124688999999988888889999999997654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=73.45 Aligned_cols=104 Identities=8% Similarity=0.025 Sum_probs=77.3
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe---------cCCCeEEEEEeCCccc-ccceeee
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG---------SQSGTVLLYSWGYFKD-CSDRFVG 78 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---------~~d~~i~~~d~~~~~~-~~~~~~~ 78 (188)
++|.|...|+|.++|+.++...+.+..|...|.++.|..+...+-.+ +.-+.+.+-|++++.. ..+.+++
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 57888999999999999999888899999999999997655444222 1223567778876322 1222233
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~ 112 (188)
....+|+.+ .+..|+|++..-.+.-+.+||+++.
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 145678888 7899999999999999999998543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-06 Score=58.46 Aligned_cols=137 Identities=14% Similarity=0.148 Sum_probs=88.6
Q ss_pred CeeecccCeEEEEeCC--------CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSGD--------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d--------~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~ 71 (188)
+++.|+|++.++.... +.|..++.. ++...... .-.....++|+|+++.|+ +-+..+.|..+++...+.
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEecccccc
Confidence 3678899876665543 457777766 45433333 345678999999998776 566778899999864332
Q ss_pred cc---ceeeeccC--CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEee-CCCCEEEEE
Q 029743 72 CS---DRFVGLSP--NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (188)
Q Consensus 72 ~~---~~~~~~~~--~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 141 (188)
.+ +.+..... .....+ +..+|++.++....+.|.+++.+ |+.+..+..... .+++++|. ++.+.|...
T Consensus 169 ~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 169 ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEE
T ss_pred ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEE
Confidence 11 12211012 235566 68899988887788999999987 888877776634 78999994 566666543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-08 Score=76.26 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=109.1
Q ss_pred eeecc-cCeEEEEeCCCcEEEEEcCCCc-eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~-~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.|+|+ ...+++++-|..++.||+++.. +......-......++|+-....+.+.+..+.|.+||.+.+..++..+++
T Consensus 121 n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~- 199 (1081)
T KOG0309|consen 121 NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG- 199 (1081)
T ss_pred ccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc-
Confidence 35553 4568899999999999998753 44444444566788999875555555666678999999988888888888
Q ss_pred cCCceeEE-ee-cCCCEEEEecCCCeEEEEeccc----------------------------------------------
Q 029743 80 SPNSVDAL-LK-LDEDRVITGSENGLISLVGILP---------------------------------------------- 111 (188)
Q Consensus 80 ~~~~v~~~-~~-~~~~~l~~~~~d~~v~~~d~~~---------------------------------------------- 111 (188)
|...+..+ |. .....+.+.+.|++|+.||-..
T Consensus 200 ~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~ 279 (1081)
T KOG0309|consen 200 HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENS 279 (1081)
T ss_pred cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccch
Confidence 87777777 53 3455778888999999998621
Q ss_pred ---------CeeeeecccCCCcceeEEEeeCCC----------CEEEEEeCCCcEEEEeCCCc
Q 029743 112 ---------NRIIQPIAEHSEYPIESLALSHDR----------KFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 112 ---------~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~iwd~~~~ 155 (188)
..++.++.+|.+ .|....|...+ -.|++-+.|..+++|-+.+.
T Consensus 280 d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 280 DLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 123555667765 55555554321 26899999999999987754
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-06 Score=64.89 Aligned_cols=74 Identities=20% Similarity=0.200 Sum_probs=60.1
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
....+.++ ++|+...++.|+.||.|.+||...+..... + . ...+..++|||+|..+++|+..|.+.+||+.-..
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a-~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-A-EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-e-cccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 45566777 799999999999999999999876643322 2 2 2367899999999999999999999999987544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-06 Score=65.12 Aligned_cols=136 Identities=9% Similarity=0.029 Sum_probs=90.1
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
+..++.++.++.++.+|.++++.+..... . ....+. ..+..+++++.+|.+..+|..+ ++.+..... .......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~t-G~~~W~~~~-~~~~~~s 314 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPA--VDDNRLYVTDADGVVVALDRRS-GSELWKNDE-LKYRQLT 314 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCce--EeCCEEEEECCCCeEEEEECCC-CcEEEcccc-ccCCccc
Confidence 45777788899999999999987766542 1 112222 3567888888999999999976 344332211 1111111
Q ss_pred EeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 87 ~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
.....+..+++++.+|.|+++|..+++.+..+..+...-.....+. + ..|+.++.||.|+.|
T Consensus 315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 1112467899999999999999999999888776543112233333 3 357788899998876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.7e-07 Score=67.19 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=60.0
Q ss_pred ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc
Q 029743 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
..+..|.+++++|+.+.++.|+.||.|.+||.... +..... ..-.+..+ |+|+|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG---VTLLAK-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC---eeeeee-ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 46778999999999999999999999999998642 333333 44455666 899999999999999999999854
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-06 Score=63.54 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=99.6
Q ss_pred eeecccCeEEEEe-----------CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec--CCCeEEEEEeCC
Q 029743 2 TFAADAMKLLGTS-----------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGY 68 (188)
Q Consensus 2 ~~s~~~~~l~~~~-----------~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~ 68 (188)
.|++.|++|++-. ...+++++++...... ......++|...+|.|.++.+++.+ ....+.++|++.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccc-eeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 4677787765432 1356788887744332 2225578999999999988776654 567889999873
Q ss_pred cccccceeeeccCCceeEE-eecCCCEEEEecCC---CeEEEEecccCeee-eecccCCCcceeEEEeeCCCCEEEEEe-
Q 029743 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSIS- 142 (188)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~v~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~- 142 (188)
. +.... ....-..+ |+|.+++++.++-+ |.+.+||......+ ..+.+. ..+-+.|+|+++++.+..
T Consensus 308 --N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 308 --N-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred --c-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEEEecCC
Confidence 4 33332 22333444 89999999887644 67999998754433 356555 245568999999987654
Q ss_pred -----CCCcEEEEeCCCcc
Q 029743 143 -----HDSMLKLWDLDDIL 156 (188)
Q Consensus 143 -----~d~~i~iwd~~~~~ 156 (188)
.|..|.|||+....
T Consensus 380 s~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 380 SEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CcccccCcceEEEEecCch
Confidence 47889999987654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.65 E-value=7e-06 Score=60.00 Aligned_cols=112 Identities=9% Similarity=-0.035 Sum_probs=79.8
Q ss_pred ccCeEEEEeCC-----CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC----------CCeEEEEEeCCcc
Q 029743 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGYFK 70 (188)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~~~d~~~~~ 70 (188)
++++++..... ++|.+.|..+++.+..+..-..+ ..+ ++|+++.|+++.. +..|.+||..+ .
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-H 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-C
Confidence 44555555443 89999999999988888743333 235 9999998887765 67899999986 3
Q ss_pred cccceeeeccCC-------ceeEE-eecCCCEEEEec-C-CCeEEEEecccCeeeeecccC
Q 029743 71 DCSDRFVGLSPN-------SVDAL-LKLDEDRVITGS-E-NGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 71 ~~~~~~~~~~~~-------~v~~~-~~~~~~~l~~~~-~-d~~v~~~d~~~~~~~~~~~~~ 121 (188)
+.+..+.. ... ....+ ++|+|+++++.. . +..|.+.|+.+++.+.++...
T Consensus 88 ~~~~~i~~-p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 88 LPIADIEL-PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred cEEeEEcc-CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 55544432 111 11133 699999998776 3 789999999999988877654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-08 Score=78.28 Aligned_cols=145 Identities=16% Similarity=0.161 Sum_probs=102.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCC--eEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+-+.+.|+.|+..|.|+++++.+|.......+|.++|+-+.-+.+|..+.+.+.-. ...+|++.........+.+
T Consensus 1107 ~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred EEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc
Confidence 47888999999999999999999999999999999999999999999998777655433 4678998754455555543
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC---CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
-.++ |+...+.-+.|+......+||++++.++.++-... .+.-+...|+|+...++ .|| -+||++.
T Consensus 1187 -----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1187 -----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred -----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeecc
Confidence 2345 65544445556665678899999998776632111 12235567777766554 233 2455554
Q ss_pred c
Q 029743 155 I 155 (188)
Q Consensus 155 ~ 155 (188)
.
T Consensus 1257 ~ 1257 (1516)
T KOG1832|consen 1257 P 1257 (1516)
T ss_pred H
Confidence 4
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-06 Score=63.90 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=91.7
Q ss_pred eeecccCeEEEEe---CC-CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCccccccee
Q 029743 2 TFAADAMKLLGTS---GD-GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 2 ~~s~~~~~l~~~~---~d-~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
+|+|+++.++... .. ..++++++.+++....+. ....-....|+|||+.|+ +...|+...+|-++..+..+..+
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L 277 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL 277 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec
Confidence 4788888876553 22 358899999876655544 344556788999998766 45566654444443323334444
Q ss_pred eeccCCceeEE-eecCCCEEEEecC-CCe--EEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC-CCc--EEE
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DSM--LKL 149 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~-d~~--v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~i 149 (188)
.. ..+.-..- |+|+|++++..+. .|. |.++++...... .+....+ .-....|+|||++++..+. +|. |.+
T Consensus 278 t~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~-~~~~p~~SpdG~~i~~~~~~~g~~~i~~ 354 (425)
T COG0823 278 TN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGG-GNSNPVWSPDGDKIVFESSSGGQWDIDK 354 (425)
T ss_pred cc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCC-CCcCccCCCCCCEEEEEeccCCceeeEE
Confidence 43 22222222 7999998887664 343 777777655542 3322222 2236789999999987764 344 666
Q ss_pred EeCCCcc
Q 029743 150 WDLDDIL 156 (188)
Q Consensus 150 wd~~~~~ 156 (188)
.|+.+..
T Consensus 355 ~~~~~~~ 361 (425)
T COG0823 355 NDLASGG 361 (425)
T ss_pred eccCCCC
Confidence 6665444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-06 Score=66.72 Aligned_cols=141 Identities=11% Similarity=0.235 Sum_probs=101.9
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC-----CCEEEEecCCCeEEEEEeCCcccccce-eeec
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-----GRKVVCGSQSGTVLLYSWGYFKDCSDR-FVGL 79 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~ 79 (188)
+|.++++|+.||+|.|-.+-+.+...+.. ...++.+++++|+ .+.+++|+..| +.++.-+--+..... +..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~- 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE- 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec-
Confidence 69999999999999999988877666555 4568999999997 57899999988 777764332222222 444
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCC-----cceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-----YPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
..++|.++ | .|.+++=++..| |++||+.+++.+..+..... .-...+.|.++.+.++ |...+|+|..++
T Consensus 159 ~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred CccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence 67888888 5 477888888877 89999988877766544322 1133577877665443 456678888888
Q ss_pred C
Q 029743 154 D 154 (188)
Q Consensus 154 ~ 154 (188)
.
T Consensus 234 ~ 234 (846)
T KOG2066|consen 234 K 234 (846)
T ss_pred c
Confidence 3
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-06 Score=62.60 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=66.5
Q ss_pred CeeecccC-eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
|+|||..+ ++..++.+.+|+|.|+++.........+ .++++++|.-+. ++|+.|..+|.|.+||++.....+..+..
T Consensus 199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA 277 (463)
T ss_pred hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh
Confidence 57899766 7888999999999999998888887766 789999998866 56778888999999999876555554433
Q ss_pred -ccCCceeEE
Q 029743 79 -LSPNSVDAL 87 (188)
Q Consensus 79 -~~~~~v~~~ 87 (188)
....++..+
T Consensus 278 ~~t~~pv~~i 287 (463)
T KOG1645|consen 278 NVTINPVHKI 287 (463)
T ss_pred hhccCcceee
Confidence 123445544
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-06 Score=62.97 Aligned_cols=159 Identities=10% Similarity=0.042 Sum_probs=108.5
Q ss_pred eeecccCeEEEEeC-CCcEEEEEcCCCceeeeecccccceEEEEEEe-CC--C-EE-EEecCCCeEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NG--R-KV-VCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~-~l-~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
+.+-++.++.+.+. |..++++|+.+-..+..++- ......+.|.. .| . .+ +..-.++.+.++|-.....+...
T Consensus 60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~ 138 (558)
T KOG0882|consen 60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY 138 (558)
T ss_pred hccccceeEeeccCcccceeEEEeeccchhhhccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce
Confidence 45667888888777 99999999987554433331 11112233322 23 1 23 33445688999997654445555
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc------Ceeeee---------cccCCCcceeEEEeeCCCCEEE
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP------NRIIQP---------IAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~------~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
+.+.|..+|.++ +.+.+..+++....|.|.-|.... .+.... +..... ...++.|+|++..+.
T Consensus 139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt-~pts~Efsp~g~qis 217 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT-EPTSFEFSPDGAQIS 217 (558)
T ss_pred ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccccc-CccceEEccccCccc
Confidence 555588999999 799999999999999999998762 111111 111112 567899999999999
Q ss_pred EEeCCCcEEEEeCCCccCCCCCC
Q 029743 140 SISHDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~~~~~ 162 (188)
+-+.|..|++++++++...+.+.
T Consensus 218 tl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 218 TLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccCcccEEEEEEeccchhhhhhh
Confidence 99999999999999987665443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-06 Score=64.70 Aligned_cols=137 Identities=19% Similarity=0.193 Sum_probs=84.7
Q ss_pred eeecccCeEEEEeC-CC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeCCcccccceee
Q 029743 2 TFAADAMKLLGTSG-DG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+|||||++|+.... |+ .|+++|+..+...+ +....+.-..-.|+|+|+.++.. +..|.-.||-++..+...+.+.
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 69999999887643 44 56677877766443 44333444477899999887754 4455545554443344445554
Q ss_pred eccCCc-eeEEeecCCCEEEEecC-CCe--EEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 78 GLSPNS-VDALLKLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 78 ~~~~~~-v~~~~~~~~~~l~~~~~-d~~--v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
. .... ..-.++|+|++++..+. +|. |.+.++.++...+.+... . ......|.++++.++..+
T Consensus 323 ~-~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~-~-~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 323 F-SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST-Y-LNESPSWAPNGRMIMFSS 388 (425)
T ss_pred c-cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc-c-cCCCCCcCCCCceEEEec
Confidence 4 3222 23337999999887764 344 667777666544444433 2 345667888888776544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-06 Score=67.76 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=97.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC-----------------------Cceeeeecc----------------------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK-----------------------NTVQTRSEF---------------------- 35 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~-----------------------~~~~~~~~~---------------------- 35 (188)
++||||+.+|+..+.++++.+..-.- |+....|.|
T Consensus 126 ~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 126 ASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred EEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence 47999999999999988887764210 111111110
Q ss_pred --cccceEEEEEEeCCCEEEEecC------CCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecC---CCe
Q 029743 36 --SEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGL 103 (188)
Q Consensus 36 --~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~ 103 (188)
....-..+.|..||.++++.+- -..+++|+-+ +....+-.. -.+--.++ |-|.|.++++... ...
T Consensus 206 ~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 206 LSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred cccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEecccc-CCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 1224467889999999998764 2578899854 333332222 22333445 7899999998874 345
Q ss_pred EEEEecccCeeeeeccc---CCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 104 ISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 104 v~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|.+|. ++|-....|.- +.+..|..+.|++|+..|+..-.|. |.+|-..+..
T Consensus 283 VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 283 VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 77776 34433322221 2234799999999999999877555 9999887754
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.5e-05 Score=54.31 Aligned_cols=139 Identities=8% Similarity=0.067 Sum_probs=88.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC--ceeeee---cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++.+++|+.||.. .|..|.|-..++. ..+... +.....=.-++|+||+..|+.+...|+|++||+- +..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~--g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM--GSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc--cceeEE
Confidence 3567889888875 5677777766543 222222 2233345789999999999999999999999985 233333
Q ss_pred eee------ccCCceeEE-e-ecC-----CCEEEEecCCCeEEEEecccC-----e--eeeecccCCCcceeEEEeeCCC
Q 029743 76 FVG------LSPNSVDAL-L-KLD-----EDRVITGSENGLISLVGILPN-----R--IIQPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 76 ~~~------~~~~~v~~~-~-~~~-----~~~l~~~~~d~~v~~~d~~~~-----~--~~~~~~~~~~~~v~~~~~~~~~ 135 (188)
+.+ .....|..+ | .+. ...|++-...|.++=|-+..+ + ....+..|....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 322 012345555 4 221 224666777888877765322 1 2233434433479999999998
Q ss_pred CEEEEEe
Q 029743 136 KFLGSIS 142 (188)
Q Consensus 136 ~~l~~~~ 142 (188)
+.|++|+
T Consensus 160 ~LLlVgG 166 (282)
T PF15492_consen 160 RLLLVGG 166 (282)
T ss_pred CEEEEec
Confidence 8888776
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.4e-06 Score=67.63 Aligned_cols=148 Identities=13% Similarity=0.131 Sum_probs=96.2
Q ss_pred CeeecccCeEEEEeC------CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC---CCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSG------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~ 71 (188)
++|-.||+++|+.+. -+.++||+-+ |....+...-.+--.+++|.|.|++|++... ...|.+|.-+ |.
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GL 291 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GL 291 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--Cc
Confidence 468889999998864 2578999954 6655444433444568899999999988765 3456666643 22
Q ss_pred cccee----eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe--eeeecccCCCcceeEEEeeCCC-CEEEEEeC
Q 029743 72 CSDRF----VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDR-KFLGSISH 143 (188)
Q Consensus 72 ~~~~~----~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~ 143 (188)
.-..| .. ....+..+ |++++..|+....+. |.+|-..+.. ..+.+.......+..+.|+|.. ..|.....
T Consensus 292 rhgeF~l~~~~-~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 292 RHGEFTLRFDP-EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred EeeeEecCCCC-CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEec
Confidence 11112 12 34568888 899999999977555 9999887654 3333332222245569999954 34666666
Q ss_pred CCcEEEEeCC
Q 029743 144 DSMLKLWDLD 153 (188)
Q Consensus 144 d~~i~iwd~~ 153 (188)
++.+..+++.
T Consensus 370 ~g~~~~~~~~ 379 (928)
T PF04762_consen 370 NGQYEIYDFA 379 (928)
T ss_pred CCcEEEEEEE
Confidence 6777665544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-06 Score=66.74 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=92.8
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc--------------cccceeeeccCCceeEE-eecCCCEEEEecCC
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN 101 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d 101 (188)
.....++.|+....++++|+.||.+++..+.+.. ..-+++.+ |...|..+ |+.+.+.|-+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccccCCC
Confidence 3467899999999999999999999999886421 12345678 99999988 88888999999999
Q ss_pred CeEEEEecccCeeeeeccc-CCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 102 GLISLVGILPNRIIQPIAE-HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 102 ~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
|.|.+|-+-.+.-...+.. .....|.+++|..+|..++..-.||.|.+=.+..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc
Confidence 9999999988875544422 2233688999999999998888888887755443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=9e-05 Score=51.46 Aligned_cols=145 Identities=19% Similarity=0.112 Sum_probs=91.1
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeee-cccc---cceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSE---EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.+..++++..++.++.+|..+|+.+... .... ...........+..++.+..++.+..+|+.+ +..+..... ..
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-G~~~w~~~~-~~ 152 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT-GKLLWKYPV-GE 152 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT-TEEEEEEES-ST
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCC-CcEEEEeec-CC
Confidence 4556677777889999999999888774 3221 1122333333578888888899999999986 455444433 22
Q ss_pred Cc----e-------eEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 82 NS----V-------DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 82 ~~----v-------~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
.. + ..+...++ .++.+..++.+..+|+.+++.+.... . . .+.. ....++..|+.++.++.|..|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~-~-~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I-S-GIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S-S--ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C-C-CccC-CceeeCCEEEEEeCCCEEEEE
Confidence 11 1 12222344 77777777754444999998665333 2 2 2333 134567788877789999999
Q ss_pred eCCCccC
Q 029743 151 DLDDILK 157 (188)
Q Consensus 151 d~~~~~~ 157 (188)
|+++++.
T Consensus 228 d~~tG~~ 234 (238)
T PF13360_consen 228 DLKTGKV 234 (238)
T ss_dssp ETTTTEE
T ss_pred ECCCCCE
Confidence 9998753
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-05 Score=58.00 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=93.9
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
.+..+++++.++.|+.+|..+|+.+............+. .++..++.++.++.+..+|..+ ++.+..... ...+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~--~~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAED-GKELWRAKL--SSEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCC-CcEeeeecc--Cceee
Confidence 466788888889999999999998876653322222222 2577888888999999999876 444433322 12222
Q ss_pred EEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcce-----eEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+...-.+..++.++.++.|+.+|.++|+.+..+..... .. ...... + ..++.+..++.+..+|++++..
T Consensus 139 ~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 139 SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCE
Confidence 21111355777788899999999999988776654321 11 111222 2 4667777889999999887754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.6e-05 Score=59.01 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=81.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|.++|+|++++.+ .+|...|+.....+... .+.-...+|.+.++ +++-...++|.++.--. ......+..
T Consensus 38 ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~-~~~~k~i~~-- 107 (443)
T PF04053_consen 38 LSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK-NEVVKSIKL-- 107 (443)
T ss_dssp EEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE-E-TT-------
T ss_pred EEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCc-cccceEEcC--
Confidence 4689999999984 45888888844333322 23445788988544 66666688899974221 233334442
Q ss_pred CCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
...+..+|. |.+|...+.+ .|.+||..+++.++.+... +|..+.|++++.+++..+.+ .+.+++.+..
T Consensus 108 ~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 108 PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 234566665 8777776655 7999999999999998754 48999999999999888744 6777765543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-05 Score=61.06 Aligned_cols=93 Identities=13% Similarity=0.044 Sum_probs=65.3
Q ss_pred CcEEEEEcCC-----CceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCccc-----------ccceeeec
Q 029743 17 GTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD-----------CSDRFVGL 79 (188)
Q Consensus 17 ~~i~i~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~-----------~~~~~~~~ 79 (188)
+.|.+.|..+ ...+..++ -....+.+.++|||+++++++. +.++.++|+..... ......-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 5577778776 34444444 3456789999999998877655 78999999975322 1222222
Q ss_pred cCCceeEEeecCCCEEEEecCCCeEEEEeccc
Q 029743 80 SPNSVDALLKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
..++....|.++|....+-..|..|..|++..
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 34556666888888777888899999999875
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-05 Score=63.41 Aligned_cols=154 Identities=15% Similarity=0.188 Sum_probs=100.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccc-eEEEEEEeCCCEEEEecCCC-----eEEEEEeCCc-----c
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYF-----K 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~-----~ 70 (188)
++++.+..++.|+.+|.|.+++-. -+.+..++.+... |..+....+...|++-+.|+ .+++|+++.. .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 578889999999999999888732 3444666766666 44444444446777766654 5899999642 1
Q ss_pred ccc---ceee---eccCCceeEE-eecCCCEEEEecCCCeEEEEecc---cCeeeeecccCCCcceeEEEeeCCCCEEEE
Q 029743 71 DCS---DRFV---GLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL---PNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 71 ~~~---~~~~---~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
.++ +.+. +....++.++ .+.+-+.+++|-.+|.|..+.-+ .......+....+.+|+++++..+++.++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 1111 1023456666 57888899999999999888522 111122222222349999999999987554
Q ss_pred EeCCCcEEEEeCCCcc
Q 029743 141 ISHDSMLKLWDLDDIL 156 (188)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (188)
+..-..|.+|.+....
T Consensus 189 v~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRT 204 (933)
T ss_pred EEecceeEEEEecCCC
Confidence 5556689999998554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.7e-05 Score=52.47 Aligned_cols=146 Identities=19% Similarity=0.219 Sum_probs=92.4
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee-eeccCCc
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-VGLSPNS 83 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~ 83 (188)
++++.+++++.++.|+.||..+|+.+..... ...+.... ...+..++.+..++.+..+|..+ +..+... .. ....
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~-~~~~ 109 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLT-SSPP 109 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTT-SCEEEEEEE--SSCT
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCC-cceeeeeccc-cccc
Confidence 3677788888999999999999998877664 22222212 23455666666788999999876 4555542 32 2111
Q ss_pred --eeEE--eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCc---ce-------eEEEeeCCCCEEEEEeCCCcEEE
Q 029743 84 --VDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY---PI-------ESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 84 --v~~~--~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~---~v-------~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
.... ....+..++++..++.|..+|+++|+.+......... ++ ..+.+. ++ .+..++.++.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVA 187 (238)
T ss_dssp CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEE
T ss_pred cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEE
Confidence 1111 2335888888888999999999999987776553210 11 222332 44 6666666775444
Q ss_pred EeCCCcc
Q 029743 150 WDLDDIL 156 (188)
Q Consensus 150 wd~~~~~ 156 (188)
+|+.++.
T Consensus 188 ~d~~tg~ 194 (238)
T PF13360_consen 188 VDLATGE 194 (238)
T ss_dssp EETTTTE
T ss_pred EECCCCC
Confidence 4888876
|
... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-05 Score=63.50 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=92.7
Q ss_pred CCCcEEEEEcCCCceeeeecccccc-eEEEEEEe-----CCCEEEEecCCCeEEEEEeCCcccccceeee---ccCCcee
Q 029743 15 GDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG---LSPNSVD 85 (188)
Q Consensus 15 ~d~~i~i~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~v~ 85 (188)
....|+-.|++.|+.+.....+... |..++-.. .....+.|-.+..+..||.+..+..+..-.. .......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4578999999999999988876544 55544321 1234566777888999999875433221111 0233455
Q ss_pred EEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
|+......+|++|+.+|.||+||--..+....+.+-.. +|.+|..+.||++|+..+ +..|.++++.
T Consensus 582 ~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 582 CFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred EEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 55555666999999999999999433233344555534 999999999999987665 5667777753
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0002 Score=50.21 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=89.9
Q ss_pred eee-cccCeEEEEeCCCcEEEEEcCCCceeeeecc-----cccceEEEEEEeCCCEEEEecCC--------CeEEEEEeC
Q 029743 2 TFA-ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----SEEELTSVVLMKNGRKVVCGSQS--------GTVLLYSWG 67 (188)
Q Consensus 2 ~~s-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~ 67 (188)
++. +++ .|+.+.. +.+.++|..+++....... .....+.+++.|+|+..++.... +.+..++..
T Consensus 46 ~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 46 AFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp EEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred EEEccCC-EEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 345 454 4444455 4456669888755433332 34568899999999977765443 345555544
Q ss_pred CcccccceeeeccCCceeEE-eecCCCEEE-EecCCCeEEEEecccCe-------eeeecccCCCcceeEEEeeCCCCEE
Q 029743 68 YFKDCSDRFVGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNR-------IIQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~-~~~~d~~v~~~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
+.. ..+.. .-.....+ ++|+++.|+ +-+..+.|..+++.... ....+....+ ..-.+++..+|+..
T Consensus 124 --~~~-~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 124 --GKV-TVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG-YPDGLAVDSDGNLW 198 (246)
T ss_dssp --SEE-EEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC-EEEEEEEBTTS-EE
T ss_pred --CeE-EEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCc-CCCcceEcCCCCEE
Confidence 232 33333 33456677 899998765 55678889999986322 1222222212 36789999999888
Q ss_pred EEEeCCCcEEEEeCCC
Q 029743 139 GSISHDSMLKLWDLDD 154 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~ 154 (188)
++.-..+.|.+++.+.
T Consensus 199 va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 199 VADWGGGRIVVFDPDG 214 (246)
T ss_dssp EEEETTTEEEEEETTS
T ss_pred EEEcCCCEEEEECCCc
Confidence 8777889999999873
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=66.77 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=69.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceE-EEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+.|+|.-.++|.+..+|.|.+..+. .+.+.+++.|...++ +++|.|||+.|++|-.||+|++-|+..+.........
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s- 103 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS- 103 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc-
Confidence 4689999999999999999999888 677788887778887 9999999999999999999999999875444443333
Q ss_pred cCCceeEE
Q 029743 80 SPNSVDAL 87 (188)
Q Consensus 80 ~~~~v~~~ 87 (188)
....+.++
T Consensus 104 ~e~~is~~ 111 (665)
T KOG4640|consen 104 VETDISKG 111 (665)
T ss_pred cccchhee
Confidence 45566666
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.4e-07 Score=67.51 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=88.4
Q ss_pred eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc------ccceeeeccCCceeEE-eecCCCEEEEecCCCe
Q 029743 31 TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD------CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGL 103 (188)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~ 103 (188)
..+.+|+..|..++--.+.+.+++++.|.+|++|.++..+. +..+++. |+.++..+ |-.+-+++++ .|+.
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeee--ccCc
Confidence 45668998899888777889999999999999999975443 4445677 89999999 8777777654 4678
Q ss_pred EEEEecccCeeeeecc-cCCCcceeEEEeeC--CCCEEEEE-eCCCcEEEEeCCCcc
Q 029743 104 ISLVGILPNRIIQPIA-EHSEYPIESLALSH--DRKFLGSI-SHDSMLKLWDLDDIL 156 (188)
Q Consensus 104 v~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~-~~d~~i~iwd~~~~~ 156 (188)
|++||.--++++.++. ....+.+..+..-+ +...++.+ +...+|+++|.+...
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc
Confidence 9999988777766442 22222344444444 34444444 678999999988653
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00017 Score=49.90 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=95.0
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
..+++.|+..+.+.-.|..+|+.+..-. ...++.+-+.- -|++++.|...|.+++.+..+ +.....+.....-.+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccce
Confidence 3457788888999999999998876543 23344443333 477899999999999999987 45555554312333444
Q ss_pred EeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 87 ~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
...+++..+.+|+.|+..+..|.++..++...+-... ...+-+..|-...|..+...|.|.--.
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~-~f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG-TFVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCc-eeccceecCCCceEEEEeccceEEEEc
Confidence 4789999999999999999999999888877655422 333445566223344444445444333
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-05 Score=59.77 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=94.1
Q ss_pred eeecccCeEEEEeC----------CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC---CCeEEEEEeCC
Q 029743 2 TFAADAMKLLGTSG----------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGY 68 (188)
Q Consensus 2 ~~s~~~~~l~~~~~----------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~ 68 (188)
.|-.+|.+|+.--. -..+-|+.++.....-..-.....|...+|-|.|+.+++-+. ..++.+|.+.+
T Consensus 400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 35556777765321 123445555443322222235678999999999988776443 35789998873
Q ss_pred cc---cccceeeeccCCceeEE-eecCCCEEEEec---CCCeEEEEecccCeeeee-cccCCCcceeEEEeeCCCCEEEE
Q 029743 69 FK---DCSDRFVGLSPNSVDAL-LKLDEDRVITGS---ENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 69 ~~---~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~---~d~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
.. ..+..+. ......+ |+|.|++++.+. ..|.+.++|+....+..+ ...|. ..+.+.|.|.|+++++
T Consensus 480 ~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~--~at~veWDPtGRYvvT 554 (698)
T KOG2314|consen 480 NIKKPSLVKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF--AATEVEWDPTGRYVVT 554 (698)
T ss_pred CCCchhhhhhhc---ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc--ccccceECCCCCEEEE
Confidence 22 2222232 2445667 799999988764 568899999875333222 23342 5688999999999998
Q ss_pred EeC------CCcEEEEeCCCc
Q 029743 141 ISH------DSMLKLWDLDDI 155 (188)
Q Consensus 141 ~~~------d~~i~iwd~~~~ 155 (188)
++. |..-++|+++..
T Consensus 555 ~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 555 SSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred eeehhhhccccceEEEEeecH
Confidence 874 556788887754
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.6e-06 Score=59.96 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=96.7
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCC---ceeeeeccc-----ccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFS-----EEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
.|+.|.+.++++ .|-.|.+|++.-. -.+-.++.| ..-|++..|+|.. ..+..++..|.|++-|+++..-+
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 466677777765 4578899987632 112222333 3457888999954 67778888999999999843211
Q ss_pred cce---------------eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC-eeeeecccCC------------C
Q 029743 73 SDR---------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHS------------E 123 (188)
Q Consensus 73 ~~~---------------~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~------------~ 123 (188)
... +.+ ....+..+ |+++|+++++-.. -+|++||.+.. .++.++..|. +
T Consensus 258 dn~~klfe~~~D~v~~~ff~e-ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEE-IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred cCchhhhhhccCcccchhHHH-HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 110 112 23345666 7999999887654 47999999864 4666664332 1
Q ss_pred --cceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 124 --YPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 124 --~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
+.-..+.|+.|.+.+++|+..+..-+|-+.
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeeccc
Confidence 122357788888899999887777777533
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00016 Score=51.55 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=95.0
Q ss_pred Ceeec-ccCeEEEEeCCC-cEEEEEcCCCceeeeecccccce--EEEEEEeCCCEEEEecC-----CCeEEEEEeCCccc
Q 029743 1 MTFAA-DAMKLLGTSGDG-TLSVCNLRKNTVQTRSEFSEEEL--TSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~ 71 (188)
++.+| .+..++.+-.-| ...+||..+++....+....+.- -.-+|++||++|++.-. .|.|-+||....-.
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 35677 555666666655 46789999998877765433322 24579999999998654 47899999984445
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecC-------CC-----------eEEEEecccCeeeeecc----cCCCcceeE
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-------NG-----------LISLVGILPNRIIQPIA----EHSEYPIES 128 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-------d~-----------~v~~~d~~~~~~~~~~~----~~~~~~v~~ 128 (188)
.+..+.. +.-....+ +.|||+.|+++.. .| .+.+.|..+|+.+.+.. -|.- .|..
T Consensus 90 ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l-SiRH 167 (305)
T PF07433_consen 90 RIGEFPS-HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL-SIRH 167 (305)
T ss_pred EEeEecC-CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc-ceee
Confidence 5666666 66555666 7999987776632 12 25566677888776632 2433 6999
Q ss_pred EEeeCCCCEEEEEe
Q 029743 129 LALSHDRKFLGSIS 142 (188)
Q Consensus 129 ~~~~~~~~~l~~~~ 142 (188)
+++.++|..++..-
T Consensus 168 La~~~~G~V~~a~Q 181 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQ 181 (305)
T ss_pred EEecCCCcEEEEEe
Confidence 99999987666443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.6e-05 Score=58.34 Aligned_cols=146 Identities=10% Similarity=0.047 Sum_probs=92.6
Q ss_pred ecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-------------------------
Q 029743 4 AADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------------------------- 57 (188)
Q Consensus 4 s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------- 57 (188)
+|||+.+...+ ..+.+.+.|.++.+...++.- ......+.++|+|+++++.+.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 45666553332 235667778777666555542 224466777888887776641
Q ss_pred ---------------CCeEEEEEeCC----cccccceeeeccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCee--
Q 029743 58 ---------------SGTVLLYSWGY----FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRI-- 114 (188)
Q Consensus 58 ---------------d~~i~~~d~~~----~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~-- 114 (188)
++.|.+.|..+ ....+..+. -......+ ++|||+++++++ .+.+|.++|+.+.+.
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 23466666553 112222222 33445666 799999887766 589999999987442
Q ss_pred ----------eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 115 ----------IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 115 ----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
..+..-..+ ....+|.++|....+--.|.+|-.|++.+
T Consensus 358 ~~~~~~~~~vvaevevGlG--PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLG--PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCCC--cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333333222 34578999998778888999999999987
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.8e-06 Score=62.59 Aligned_cols=116 Identities=18% Similarity=0.170 Sum_probs=84.4
Q ss_pred cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE--eecCCCEEEEecCCCeEEEEecccCe
Q 029743 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL--LKLDEDRVITGSENGLISLVGILPNR 113 (188)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~~~~~d~~v~~~d~~~~~ 113 (188)
+...|.--+++..+++++.|+.-|.+++|+-..+........+ ...+.++ .+++..+++.|+..|.|.++-+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~--~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG--ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC--ccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 4455655667778999999999999999997642222222222 2333333 58899999999999999999887643
Q ss_pred ee-----eec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 114 II-----QPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 114 ~~-----~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
+. ... ..|+. .|++++|++|+..+.+|...|+|..-.+..
T Consensus 110 p~~~~~~t~~d~~~~~-rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKC-RVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCc-eEEEEEecccccEEeecCCCceEEEEEech
Confidence 21 111 12433 899999999999999999999999988887
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.5e-06 Score=54.93 Aligned_cols=110 Identities=26% Similarity=0.464 Sum_probs=82.5
Q ss_pred CCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEEe--ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcc
Q 029743 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125 (188)
Q Consensus 48 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~ 125 (188)
-+..+++|+.+|.|.+|.....+........ ....+.+.+ -.++.+..+++.+|.|+.|++...+.+.....|...+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc-ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 3568899999999999998755555554444 455555554 3456688999999999999999888777666665236
Q ss_pred eeEEEeeCCCCEEEEE--eCCCcEEEEeCCCccCC
Q 029743 126 IESLALSHDRKFLGSI--SHDSMLKLWDLDDILKG 158 (188)
Q Consensus 126 v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~ 158 (188)
+..+.....+++++.+ +.|..++.|++......
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~ 182 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDE 182 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhhhcc
Confidence 6667777777788877 88999999998876543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3e-05 Score=54.77 Aligned_cols=119 Identities=10% Similarity=0.174 Sum_probs=78.5
Q ss_pred ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee--eecc-----CCceeEE-eecC-CCEEEEecCCCeEE
Q 029743 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGLS-----PNSVDAL-LKLD-EDRVITGSENGLIS 105 (188)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~-----~~~v~~~-~~~~-~~~l~~~~~d~~v~ 105 (188)
.|+.-+.++.++.+...++++. |-.|.+|++.......... ++ | ...+++. |+|. ...+...+..|.|+
T Consensus 170 aH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 4666678888888877777654 5679999986543333332 22 2 2346666 8884 55777778899999
Q ss_pred EEecccCee------eeec--cc--C---C--CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 106 LVGILPNRI------IQPI--AE--H---S--EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 106 ~~d~~~~~~------~~~~--~~--~---~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+-|++.... +... .+ + . -..|..+.|+++|+++++-. --+|++||.+...
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k 312 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK 312 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc
Confidence 999984321 1111 10 0 0 02588899999999988654 4589999998654
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-05 Score=62.03 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=82.8
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce----e
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----F 76 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~ 76 (188)
+++..+++++.|+..|.+++|+-..++....-. +....+..+..+++..+++.|+..|.|.++-+......-.. .
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 355678999999999999999977665543222 34455667778888899999999999999988653222222 2
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
..+|+..|+++ |++++..+++|...|+|.+-.+.+
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 22267789999 999999999999999998777655
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00024 Score=53.41 Aligned_cols=135 Identities=11% Similarity=0.054 Sum_probs=87.1
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
+..++.++.++.++.+|..+|+.+...... ....+ ...+..++.++.++.+..+|..++ ..+-.... .....
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~--~~~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~-~~~~~-- 327 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDF--AVDGGRIYLVDQNDRVYALDTRGG-VELWSQSD-LLHRL-- 327 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCc--EEECCEEEEEcCCCeEEEEECCCC-cEEEcccc-cCCCc--
Confidence 456777788899999999999877654321 11122 224677888888999999998763 33222111 11111
Q ss_pred Eeec--CCCEEEEecCCCeEEEEecccCeeeeecccCCCccee-EEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 87 LLKL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-SLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 87 ~~~~--~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
..+| .+.+++.++.+|.|+..|..+|+.+........ .+. ...+ .+..|+.++.||.|+.++.
T Consensus 328 ~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~-~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 328 LTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS-GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 1122 356788899999999999999998776654322 222 2223 2447888899999988764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.4e-05 Score=61.54 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=101.7
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
++..++.|+....+..+|+.+.+..+...-..+.|.-+ ..+++.+++|...|+|.+-|.++ -+.+..+.. |.+.+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~a-Hs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNS-FETIHTFDA-HSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCc-Cceeeeeec-ccccee
Confidence 45567777777888888988877665544333334444 44789999999999999999976 577888888 877665
Q ss_pred EEeecCCCEEEEecCC---------CeEEEEecccCeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEe
Q 029743 86 ALLKLDEDRVITGSEN---------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWD 151 (188)
Q Consensus 86 ~~~~~~~~~l~~~~~d---------~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd 151 (188)
. |.-.|+.|++++.. .-|+|||++.-+.+..+..+.+ ..-+.|+|.- ..+++++..|...+-|
T Consensus 222 D-fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 222 D-FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred e-eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeecc
Confidence 4 46678888888753 3478999998887777766644 3557788843 4677777888888877
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0009 Score=50.11 Aligned_cols=153 Identities=13% Similarity=0.095 Sum_probs=105.0
Q ss_pred CeeecccCeEEEEeC---CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec-CCCeEEEEEeCCcccccc--
Q 029743 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD-- 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~-- 74 (188)
++++|+++.+..+.. ++.+.+.|..++........-..+ ..+++.|+|..++.+. .++.+.+.|.... ...+
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~ 198 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGS 198 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccc
Confidence 468899988887765 688999998888887775532233 8999999999766655 6789999997542 2221
Q ss_pred ---eeeeccCCceeEEeecCCCEEEEecCC---CeEEEEecccCeeeee-cccCCCcceeEEEeeCCCCEEEEEe-CCCc
Q 029743 75 ---RFVGLSPNSVDALLKLDEDRVITGSEN---GLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSIS-HDSM 146 (188)
Q Consensus 75 ---~~~~~~~~~v~~~~~~~~~~l~~~~~d---~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~ 146 (188)
.... ...+..-.++|+|.++...... +.+...|..++..... +..... ....+..+|+|..+.+.. ..+.
T Consensus 199 ~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~ 276 (381)
T COG3391 199 VGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGT 276 (381)
T ss_pred ccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCe
Confidence 1221 2233333379999977666544 5899999888776654 333322 356789999999987774 4478
Q ss_pred EEEEeCCCccC
Q 029743 147 LKLWDLDDILK 157 (188)
Q Consensus 147 i~iwd~~~~~~ 157 (188)
+.+-|..+...
T Consensus 277 V~vid~~~~~v 287 (381)
T COG3391 277 VSVIDGATDRV 287 (381)
T ss_pred EEEEeCCCCce
Confidence 88888877543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.1e-05 Score=60.36 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=59.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 67 (188)
++|+|..-.|+.|-.-|.+.+|...+.+.......|+.++..+.|+++|..++++..-|.+.+|..+
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5789988888898888999999987766655666899999999999999999999999999999886
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.3e-07 Score=68.04 Aligned_cols=150 Identities=15% Similarity=0.218 Sum_probs=95.2
Q ss_pred eeec-ccCeEEEEe----CCCcEEEEEcCCC--ceee--eec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc
Q 029743 2 TFAA-DAMKLLGTS----GDGTLSVCNLRKN--TVQT--RSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 2 ~~s~-~~~~l~~~~----~d~~i~i~~~~~~--~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
+|++ |.+.||+|- .|..+.|||+.++ .+.. .+. +......+++|-.+.+.+.+|.....++++|++. .
T Consensus 109 AwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq--s 186 (783)
T KOG1008|consen 109 AWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ--S 186 (783)
T ss_pred ccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh--h
Confidence 4555 556677763 3568999999875 2211 122 2334566888988888999999999999999984 2
Q ss_pred ccceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEe-ccc-CeeeeecccCCC---cceeEEEeeCCCC-EEEEEe-
Q 029743 72 CSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVG-ILP-NRIIQPIAEHSE---YPIESLALSHDRK-FLGSIS- 142 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d-~~~-~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~~~~- 142 (188)
+.+...- .+..+..+ ..| .+.|+++.. |+.|.+|| .+. ..++..+..... .++..++|+|... .+++..
T Consensus 187 ~~~~~sv-nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R 264 (783)
T KOG1008|consen 187 LDSVSSV-NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR 264 (783)
T ss_pred hhhhhhh-hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc
Confidence 2222222 33344555 566 666776655 89999999 433 334433322211 1488999999553 344555
Q ss_pred CCCcEEEEeCCCc
Q 029743 143 HDSMLKLWDLDDI 155 (188)
Q Consensus 143 ~d~~i~iwd~~~~ 155 (188)
..++|+++++..-
T Consensus 265 dS~tIrlydi~~v 277 (783)
T KOG1008|consen 265 DSITIRLYDICVV 277 (783)
T ss_pred CcceEEEeccccc
Confidence 4589999998753
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00071 Score=55.86 Aligned_cols=152 Identities=12% Similarity=0.131 Sum_probs=96.2
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC----c--------
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY----F-------- 69 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~----~-------- 69 (188)
.|..+++.++.+..+|.|.+-|.++.... ....-...|.+++|+||++.++..+..+++.+-+-.- .
T Consensus 75 ~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~ 153 (1265)
T KOG1920|consen 75 QFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDE 153 (1265)
T ss_pred EEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccc
Confidence 35557778888888999999988776543 2223456899999999999999888877776543310 0
Q ss_pred ----------ccccceeeeccCC---------------------ceeEE-eecCCCEEEEe-----cCCCeEEEEecccC
Q 029743 70 ----------KDCSDRFVGLSPN---------------------SVDAL-LKLDEDRVITG-----SENGLISLVGILPN 112 (188)
Q Consensus 70 ----------~~~~~~~~~~~~~---------------------~v~~~-~~~~~~~l~~~-----~~d~~v~~~d~~~~ 112 (188)
++.-..+.+ ..+ .-..+ |--||+++++. .....|++||-. |
T Consensus 154 ~~sk~v~VGwGrkeTqfrg-s~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g 231 (1265)
T KOG1920|consen 154 RKSKFVNVGWGRKETQFRG-SEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G 231 (1265)
T ss_pred cccccceecccccceeeec-chhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c
Confidence 111112221 110 11225 66789998873 333789999965 4
Q ss_pred eeeeecccCCCcceeEEEeeCCCCEEEEEe---CCCcEEEEeCCCccC
Q 029743 113 RIIQPIAEHSEYPIESLALSHDRKFLGSIS---HDSMLKLWDLDDILK 157 (188)
Q Consensus 113 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~ 157 (188)
..- .......+.=.+++|-|.|..+++.. .|+.|.+|.-+....
T Consensus 232 ~Ln-s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h 278 (1265)
T KOG1920|consen 232 ALN-STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH 278 (1265)
T ss_pred hhh-cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc
Confidence 322 22111122345799999999887654 566899998766543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0004 Score=41.89 Aligned_cols=101 Identities=15% Similarity=0.235 Sum_probs=68.7
Q ss_pred eEEEEEEe-C--C-CEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEEeecCCCEEEEecCCCeEEEEecccCeee
Q 029743 40 LTSVVLMK-N--G-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (188)
Q Consensus 40 v~~~~~~~-~--~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~ 115 (188)
|+++++.. + | +.|++|+.|..|++|+-. ..+..+. ....+.++..-.+..++.+-.+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~--e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEIT--ETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEe--cccceEEEEEcCCCEEEEEecCCEEEEEeC--ccee
Confidence 66777665 3 2 689999999999999853 4555555 356777786545578999999999999984 2333
Q ss_pred eecccCCCcceeEEEeeC-CC---CEEEEEeCCCcEEE
Q 029743 116 QPIAEHSEYPIESLALSH-DR---KFLGSISHDSMLKL 149 (188)
Q Consensus 116 ~~~~~~~~~~v~~~~~~~-~~---~~l~~~~~d~~i~i 149 (188)
..++... .+.++++.. ++ +.|++|=.+|.|-+
T Consensus 75 WRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 3444332 466666554 32 36778878887653
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0001 Score=55.63 Aligned_cols=143 Identities=14% Similarity=0.176 Sum_probs=95.8
Q ss_pred ccCeEE-EEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCC-------EEEEecCCCeEEEEEeCCccc-cccee
Q 029743 6 DAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-------KVVCGSQSGTVLLYSWGYFKD-CSDRF 76 (188)
Q Consensus 6 ~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~~~d~~~~~~-~~~~~ 76 (188)
+.++|+ .+.....++-.|++.|+.+.....+.. |.-+.+.|+.+ .-+.|-.+..|.-||.+..+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 334443 444557788899999999988886665 67777777643 224566678899999885433 22222
Q ss_pred eecc----CCceeEEeecCCCEEEEecCCCeEEEEecccCe-eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 77 VGLS----PNSVDALLKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 77 ~~~~----~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
++ | .....|.......++++|+.+|.|++||- .+. ....+++.. .+|..+..+.+|++|+..+ +..+.+-+
T Consensus 423 q~-kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG-~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 423 QS-KQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLG-DAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred ec-cccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccC-CceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 22 2 12233444455669999999999999996 443 334456664 4899999999999987554 66677666
Q ss_pred CC
Q 029743 152 LD 153 (188)
Q Consensus 152 ~~ 153 (188)
+.
T Consensus 499 t~ 500 (644)
T KOG2395|consen 499 TL 500 (644)
T ss_pred Ee
Confidence 54
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-05 Score=37.90 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=32.8
Q ss_pred ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEE
Q 029743 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (188)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 65 (188)
++...+..|...+.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667888999999999999999999999999995
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.6e-05 Score=37.71 Aligned_cols=38 Identities=39% Similarity=0.788 Sum_probs=31.8
Q ss_pred eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 113 RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 113 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
++...+..|.. .|.++.|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTG-PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCC-ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44555666655 799999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.2e-05 Score=59.22 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=73.2
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee-EE-eecCCCEEEEecCCCeEEEEecccCee
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD-AL-LKLDEDRVITGSENGLISLVGILPNRI 114 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~-~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~ 114 (188)
...+.-+.|+|.-..+|++..+|.+.+..+. . +.+.++.- +...++ ++ |.|||+.+++|-.||+|++.|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~-qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-W-QRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-c-ceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 4567889999999999999999999998886 2 44455554 555666 77 899999999999999999999999887
Q ss_pred eeecccCCCcceeEEEee
Q 029743 115 IQPIAEHSEYPIESLALS 132 (188)
Q Consensus 115 ~~~~~~~~~~~v~~~~~~ 132 (188)
+..........|.++.|.
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 766322222368888886
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00028 Score=58.04 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=93.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcC----C-------------------Cceeeeeccc---------------------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLR----K-------------------NTVQTRSEFS--------------------- 36 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~----~-------------------~~~~~~~~~~--------------------- 36 (188)
++||||+++++..+..+++.+..-. . |+....+.+.
T Consensus 115 aswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~ 194 (1265)
T KOG1920|consen 115 ASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQ 194 (1265)
T ss_pred EeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhh
Confidence 4799999999999888887665421 1 1111112211
Q ss_pred ccceEEEEEEeCCCEEEEec----CC-CeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEec---CCCeEEEE
Q 029743 37 EEELTSVVLMKNGRKVVCGS----QS-GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGS---ENGLISLV 107 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~----~d-~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~---~d~~v~~~ 107 (188)
.+.-+++.|.-||+++++.. .+ ..|++||-+ +..-.+-.. ....-.++ |-|.|..+++.. .++.|.+|
T Consensus 195 ~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--g~Lns~se~-~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 195 DDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE--GALNSTSEP-VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred ccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc--chhhcccCc-ccccccceeecCCCCeEeeeeecCCCCcEEEE
Confidence 11224589999999998832 23 789999965 222222222 33334556 788998888764 45678888
Q ss_pred eccc---CeeeeecccCCCcceeEEEeeCCCCEEEE---EeCCCcEEEEeCCCc
Q 029743 108 GILP---NRIIQPIAEHSEYPIESLALSHDRKFLGS---ISHDSMLKLWDLDDI 155 (188)
Q Consensus 108 d~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~d~~i~iwd~~~~ 155 (188)
.-.. ++....+..... .|..++|+.++..|++ ......|++|-+.+.
T Consensus 272 ErNGL~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 272 ERNGLRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ecCCccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 7432 222222333322 4899999999999987 444556999988774
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00088 Score=53.48 Aligned_cols=147 Identities=15% Similarity=0.161 Sum_probs=94.6
Q ss_pred CeEEEEeCCC-----cEEEEEcCCC------cee---eeec----ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC-
Q 029743 8 MKLLGTSGDG-----TLSVCNLRKN------TVQ---TRSE----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY- 68 (188)
Q Consensus 8 ~~l~~~~~d~-----~i~i~~~~~~------~~~---~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~- 68 (188)
++|++.+.|+ .|+||+++.- .++ +.+. ..+.++.+++.+.+-+.+++|-.+|.|..+.-+-
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 5677777664 4899998631 222 1111 1356788999999989999999999999886432
Q ss_pred --cccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeee-cccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 69 --FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 69 --~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
.+........ .+.+|+.+ +..+++.++....-..|.+|.+....+... +..+ +..+.|..+++....++.++ +
T Consensus 158 RDrgsr~~~~~~-~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~-~ 234 (933)
T KOG2114|consen 158 RDRGSRQDYSHR-GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAG-S 234 (933)
T ss_pred hccccceeeecc-CCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEec-C
Confidence 1121122223 56789999 555666533333444688999884443444 5555 55888988887665455444 5
Q ss_pred CcEEEEeCCCccC
Q 029743 145 SMLKLWDLDDILK 157 (188)
Q Consensus 145 ~~i~iwd~~~~~~ 157 (188)
..+.+|+......
T Consensus 235 e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 235 EFLYFYDSDGRGP 247 (933)
T ss_pred ceEEEEcCCCcce
Confidence 5788888875543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.4e-05 Score=55.10 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=66.6
Q ss_pred cceeeeccCCceeEE-eecCCC-EEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCCcEEE
Q 029743 73 SDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKL 149 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i 149 (188)
.+.+.. +...|+.+ |+|..+ ++..++.+.+|.|.|+++...+..+..+ . ++++++|.-|.. ++..|-..|.|.|
T Consensus 186 sq~lp~-~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~-~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 186 SQILPG-EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-N-QIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hhcccc-cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-C-CceeeeeccCCcceeEEeccCceEEE
Confidence 344555 77789999 788665 7888999999999999999999988888 4 799999998765 5566778899999
Q ss_pred EeCCCcc
Q 029743 150 WDLDDIL 156 (188)
Q Consensus 150 wd~~~~~ 156 (188)
||++...
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9998754
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00014 Score=54.56 Aligned_cols=129 Identities=19% Similarity=0.151 Sum_probs=89.4
Q ss_pred CcEE-EEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCE
Q 029743 17 GTLS-VCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDR 94 (188)
Q Consensus 17 ~~i~-i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ 94 (188)
..|. +|+..+......+....-++..+.|||.|.+|++.... .|.+|.-.... .+..+. ...+..+ |+|.++|
T Consensus 11 ~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~-~l~~~~---~~~V~~~~fSP~~kY 85 (561)
T COG5354 11 AVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA-KLVRFR---HPDVKYLDFSPNEKY 85 (561)
T ss_pred ceEEEeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchh-heeeee---cCCceecccCcccce
Confidence 3443 34444443333444456678999999999999987765 48899876543 333333 3467777 8999999
Q ss_pred EEEecCCC---------------eEEEEecccCeeeeecccCCCcc--ee-EEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 95 VITGSENG---------------LISLVGILPNRIIQPIAEHSEYP--IE-SLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 95 l~~~~~d~---------------~v~~~d~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
|.+=+... .+.+||+.++..+..+..... + .+ -+.|+-+..+++-. ....++|+++
T Consensus 86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q-~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ-PYLGWPVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCC-cccccceeeeeecchhhhhh-ccCeEEEEec
Confidence 98765433 489999999999988876644 3 34 67888888776544 3456899996
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00064 Score=53.58 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=78.7
Q ss_pred eeecccCeEEEEe------CCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC------------CeE
Q 029743 2 TFAADAMKLLGTS------GDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------------GTV 61 (188)
Q Consensus 2 ~~s~~~~~l~~~~------~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i 61 (188)
++||+|+.++... .|. .|.+++. .+.......+ ...+...|+|+|+.+++.... +.+
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql 432 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL 432 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence 6789999987765 243 4445454 2222222222 247889999998877766432 233
Q ss_pred EEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEE---EecccCee-e---eecccCCCcceeEEEeeC
Q 029743 62 LLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL---VGILPNRI-I---QPIAEHSEYPIESLALSH 133 (188)
Q Consensus 62 ~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~---~d~~~~~~-~---~~~~~~~~~~v~~~~~~~ 133 (188)
.+.+++. +...+ . ....+..+ ++|||..++... ++.|++ -....|.. + ..+.......+.++.|..
T Consensus 433 ~~~~vd~-ge~~~---~-~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 433 ARTPVDA-SAVAS---R-VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred EEEeccC-chhhh---c-cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 3334432 12211 2 34568888 899999988766 467776 33333431 1 112221122467899999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 029743 134 DRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd 151 (188)
++..+ ++..++...+|.
T Consensus 507 ~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 507 GDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred CCEEE-EEecCCCCceEE
Confidence 98855 444444333443
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=63.31 Aligned_cols=124 Identities=12% Similarity=0.118 Sum_probs=94.7
Q ss_pred eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCC--eEEE
Q 029743 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG--LISL 106 (188)
Q Consensus 30 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~--~v~~ 106 (188)
.+.+..|....+|++|+...++|+.|+..|.|++|++.+ +.......+ |..+++-+ -+.+|..+++.+.-. ...+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccc-cccccccccccCCcceeeeeccccCchHHH
Confidence 345667888899999999999999999999999999986 577777888 99999988 588888777665433 3668
Q ss_pred Eeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCC
Q 029743 107 VGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 107 ~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
|++.+ +.+...+.. -.++.|+...+.-+.|.......+||+++......
T Consensus 1172 W~~~s~~~~~Hsf~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred hccccccCccccccc-----cceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 99864 445555543 34678887655556666667889999998776554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00038 Score=51.55 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=46.4
Q ss_pred ecccCeEEEEeC---------CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC
Q 029743 4 AADAMKLLGTSG---------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 4 s~~~~~l~~~~~---------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 68 (188)
|||+++++.... .+.+.|+|+.+++....... ...+....|+|+|+.++... ++.|.+++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~ 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLAT 72 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTT
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCC
Confidence 789999888532 46788999999876544443 67789999999999988775 46888888754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0013 Score=49.46 Aligned_cols=144 Identities=12% Similarity=0.032 Sum_probs=89.5
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeeccccc----------ce-EEEEEEeCCCEEEEecCCCeEEEEEeCCcccccc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE----------EL-TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 74 (188)
.+..+++++.++.+.-+|.++|+.+........ .+ ..+.. .+..++.++.++.+.-+|..+ ++.+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~t-G~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAED-GEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCC-CCCcc
Confidence 456778888889999999999988776542210 00 01111 456777888899999999876 45544
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCc----ceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY----PIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
.... . ..+.+. .- .+..++.+..++.|..+|.++|+.+..+...... ........ +..++.++.++.+..
T Consensus 145 ~~~~-~-~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a 219 (394)
T PRK11138 145 QTKV-A-GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSA 219 (394)
T ss_pred cccC-C-CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEE
Confidence 4432 2 222211 11 3456777888899999999999988766532110 00111111 234666777888888
Q ss_pred EeCCCccC
Q 029743 150 WDLDDILK 157 (188)
Q Consensus 150 wd~~~~~~ 157 (188)
+|..++..
T Consensus 220 ~d~~~G~~ 227 (394)
T PRK11138 220 VLMEQGQL 227 (394)
T ss_pred EEccCChh
Confidence 88877654
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0053 Score=46.06 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=99.6
Q ss_pred eeecccCeEEEE-eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC---CCeEEEEEeCCcccccceee
Q 029743 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~ 77 (188)
++++.++.++.. ..++.|.+.|............ ......++++|+++.+..+.. ++.+.+.|-.+. .......
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEEEEe
Confidence 456777755444 4458899999777666655542 226789999999988877666 578888887653 3333332
Q ss_pred eccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCeeee-----ecccCCCcceeEEEeeCCCCEEEEEeCC---CcE
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQ-----PIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i 147 (188)
. ...+ ..+ +.|+|+.++... .++.|.+.|.+.....+ .+... . ....+.+.|++.++...... +.+
T Consensus 158 v-G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~-~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 158 V-GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-T-GPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred c-CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-C-CCceEEECCCCCEEEEEeccCCCceE
Confidence 2 2334 445 799999766655 78899999977665543 12222 2 34678999999977655433 588
Q ss_pred EEEeCCCcc
Q 029743 148 KLWDLDDIL 156 (188)
Q Consensus 148 ~iwd~~~~~ 156 (188)
...|..+..
T Consensus 234 ~~id~~~~~ 242 (381)
T COG3391 234 LKIDTATGN 242 (381)
T ss_pred EEEeCCCce
Confidence 888887754
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.007 Score=45.86 Aligned_cols=152 Identities=14% Similarity=0.084 Sum_probs=83.5
Q ss_pred eeecccCeEEEE-eCCC----cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-----------CeEEEEE
Q 029743 2 TFAADAMKLLGT-SGDG----TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----------GTVLLYS 65 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~----~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~~~d 65 (188)
.+||+|+++|.+ +..| .++++|+++++.+..... ......+.|.++++.|+....+ ..|+.|.
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 588999999876 3333 599999999976543211 1122349999998887665432 2477888
Q ss_pred eCCcccc-cceeeeccCCce--eEE-eecCCCEEEEecC---C-CeEEEEecccC----eeeeecccCCCcceeEEEeeC
Q 029743 66 WGYFKDC-SDRFVGLSPNSV--DAL-LKLDEDRVITGSE---N-GLISLVGILPN----RIIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 66 ~~~~~~~-~~~~~~~~~~~v--~~~-~~~~~~~l~~~~~---d-~~v~~~d~~~~----~~~~~~~~~~~~~v~~~~~~~ 133 (188)
+.+.... ...+.. ..... ..+ .++++++++.... + ..+++.++..+ .....+.....+....+...
T Consensus 209 ~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~- 286 (414)
T PF02897_consen 209 LGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH- 286 (414)
T ss_dssp TTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-
T ss_pred CCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-
Confidence 7654332 233444 33333 344 5899998775432 3 45888888764 22233332223123333333
Q ss_pred CCCEEEEEe---CCCcEEEEeCCCcc
Q 029743 134 DRKFLGSIS---HDSMLKLWDLDDIL 156 (188)
Q Consensus 134 ~~~~l~~~~---~d~~i~iwd~~~~~ 156 (188)
.+.+++... ..+.|...++.+..
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred CCEEEEeeCCCCCCcEEEEecccccc
Confidence 444444333 23566666776654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0063 Score=44.51 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=85.5
Q ss_pred cCeEEEEeC----------CCcEEEEEcCCC----ceeeee--cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc
Q 029743 7 AMKLLGTSG----------DGTLSVCNLRKN----TVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (188)
Q Consensus 7 ~~~l~~~~~----------d~~i~i~~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 70 (188)
..+++.|+. .|.|.++++... ..+..+ ....++|++++-- +++ |+++. ++.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 456776643 288999999873 222222 2456788988865 444 44433 4689999997643
Q ss_pred cccceeeeccCC--ceeEEeecCCCEEEEecCCCeEEEEeccc-Ceeeeeccc-CCCcceeEEEeeCCCCEEEEEeCCCc
Q 029743 71 DCSDRFVGLSPN--SVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAE-HSEYPIESLALSHDRKFLGSISHDSM 146 (188)
Q Consensus 71 ~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~ 146 (188)
.+..... ... .+.++ ...+.++++|.....+.++..+. ...+..+.. .....+.++.|-++++.++.+..+|.
T Consensus 119 -~l~~~~~-~~~~~~i~sl-~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 119 -TLLKKAF-YDSPFYITSL-SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp -SEEEEEE-E-BSSSEEEE-EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred -cchhhhe-ecceEEEEEE-eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 1222222 223 33333 44466999999888888875543 232322221 11226888888866678889999999
Q ss_pred EEEEeCCC
Q 029743 147 LKLWDLDD 154 (188)
Q Consensus 147 i~iwd~~~ 154 (188)
+.++....
T Consensus 196 l~~l~~~~ 203 (321)
T PF03178_consen 196 LFVLRYNP 203 (321)
T ss_dssp EEEEEE-S
T ss_pred EEEEEECC
Confidence 99998864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0054 Score=43.69 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=87.9
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccc--------
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-------- 74 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-------- 74 (188)
....++.|+.|+.+| +++++.........+. +...|..+...|+-+.+++-+ |+.+.++++..-.....
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 344678999998888 9999984332222222 233499999998777766654 48999999864221110
Q ss_pred ------eeeeccCCceeEEe---ecCCCEEEEecCCCeEEEEecccC-----eeeeecccCCCcceeEEEeeCCCCEEEE
Q 029743 75 ------RFVGLSPNSVDALL---KLDEDRVITGSENGLISLVGILPN-----RIIQPIAEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 75 ------~~~~~~~~~v~~~~---~~~~~~l~~~~~d~~v~~~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
.+. ....+.... ...+...++......|.+|..... ...+.+.-. + .+..++|. ++.++.
T Consensus 80 ~~~~~~~~~--~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~-~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 80 SRSLPTKLP--ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-D-PPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccc--ccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-C-CcEEEEEe--CCEEEE
Confidence 111 111122222 234444444444458888877542 455566555 4 68899998 456666
Q ss_pred EeCCCcEEEEeCCCccCCC
Q 029743 141 ISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 141 ~~~d~~i~iwd~~~~~~~~ 159 (188)
+. .....+.|+.+.....
T Consensus 154 ~~-~~~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 154 GT-SKGFYLIDLNTGSPSE 171 (275)
T ss_pred Ee-CCceEEEecCCCCceE
Confidence 65 4457888888665443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.2e-05 Score=60.30 Aligned_cols=105 Identities=12% Similarity=0.069 Sum_probs=81.6
Q ss_pred eeecccCeEEEEeC----CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 2 TFAADAMKLLGTSG----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
.|+|..-+++.++- .|.|-||- .+|++.+... .+-.+++++|+|..-.|+.+=.-|.+.+|.... .+.-....
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~htv~~ 98 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHTVVE 98 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceeeeecc
Confidence 58898888888863 57888875 5566544433 334567899999888888888889999999865 33333444
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL 110 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~ 110 (188)
. |+.++..+ ||++|..++++..-|.|.+|...
T Consensus 99 t-h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 T-HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred C-CCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5 89999999 99999999999999999999865
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.6e-06 Score=62.44 Aligned_cols=139 Identities=12% Similarity=0.205 Sum_probs=93.4
Q ss_pred CeEEEEeCCCcEEEEEcCCCce--eeeecccccceEEEEEEe-CCCEEEEecC----CCeEEEEEeCCc----cccccee
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMK-NGRKVVCGSQ----SGTVLLYSWGYF----KDCSDRF 76 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----d~~i~~~d~~~~----~~~~~~~ 76 (188)
-.++.|..+|.|.+-.++...- ....+++..+.++++|++ |.++|++|-. |..+.|||+... .+.....
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 4577888889999988765322 234567888999999998 5677777643 457999999642 1111111
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEe
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd 151 (188)
.+ ......++ +-.+.+++.+|.....+.++|++. ......+.. . .+..+...| ...++++-. |+.|.+||
T Consensus 151 ~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k-~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 151 SS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--K-YVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cc-cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--h-hcccceecCCCCCceeccc-cCceeecc
Confidence 11 22223345 467888899999999999999983 223333332 2 466777888 677877665 99999999
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0081 Score=43.59 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=83.0
Q ss_pred eecccCeEEEEeC-----------CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-CeEEEEEeCC-c
Q 029743 3 FAADAMKLLGTSG-----------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGY-F 69 (188)
Q Consensus 3 ~s~~~~~l~~~~~-----------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~-~ 69 (188)
..|+|.+.++... -|.|+.++. .+..++.+..+-...+.|+||||++.++.+... +.|+-|++.. .
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 4566666554433 133444443 466666666666677899999999888776654 7788887752 1
Q ss_pred cccc-----ceeeeccCCceeEE-eecCCCEEEEecCCC-eEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEE
Q 029743 70 KDCS-----DRFVGLSPNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSI 141 (188)
Q Consensus 70 ~~~~-----~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~-~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 141 (188)
+... ..+.. ..+..-.+ ...+|.+.+++...| .|..|+.+ ++.+..+..+.. .+++++|-- +.+.|...
T Consensus 197 g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 197 GPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEE
Confidence 1111 11111 12333333 466777776555544 89999988 888888877744 688888864 44555444
Q ss_pred e
Q 029743 142 S 142 (188)
Q Consensus 142 ~ 142 (188)
+
T Consensus 274 s 274 (307)
T COG3386 274 S 274 (307)
T ss_pred e
Confidence 3
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0035 Score=37.88 Aligned_cols=89 Identities=21% Similarity=0.266 Sum_probs=61.4
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 87 (188)
+.|++|+.|..|++|+- .+.+..+. ..+.|++++-... ..++.+..+|+|-+|+-. ..+...+. +..+.++
T Consensus 16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~---~RlWRiKS--K~~~~~~ 86 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS---QRLWRIKS--KNQVTSM 86 (111)
T ss_pred ceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc---ceeeeecc--CCCeEEE
Confidence 56999999999999983 35556665 3567888876654 678999999999999853 22333333 3346666
Q ss_pred --eec--CCC-EEEEecCCCeEE
Q 029743 88 --LKL--DED-RVITGSENGLIS 105 (188)
Q Consensus 88 --~~~--~~~-~l~~~~~d~~v~ 105 (188)
+.. +|. -|++|-.+|.|-
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeEE
Confidence 333 332 588888888774
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0027 Score=50.15 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=61.6
Q ss_pred cceEEEEEEeCCCEEEEec------CCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCC---------
Q 029743 38 EELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN--------- 101 (188)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d--------- 101 (188)
..+.+++++|+|+.++... .|..-.||-....+.. +.+.. .. ....- |+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887654 2443344443322333 33332 22 24444 89998877766432
Q ss_pred ---CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 102 ---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 102 ---~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
+.+.+.+++.+.... ...+ .|..+.|+|||..++... ++.|++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g-~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPG-PISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCC-CcCeEEECCCCCEEEEEE-CCEEEE
Confidence 233333444333322 1223 699999999999987665 467776
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00063 Score=50.52 Aligned_cols=147 Identities=13% Similarity=0.090 Sum_probs=102.3
Q ss_pred ccCeEEEEeCCCcEEEEEcCC--C-ceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCcccccceeee-cc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRK--N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVG-LS 80 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-~~ 80 (188)
..+++.+++.||.++.|--.. + +.+..+..|-..+.+++.+-++..+.+.+. |..++++|+.+. .....++- .-
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~-DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF-DMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc-chhhhcccccC
Confidence 457889999999999997543 2 344556678889999999999999999777 999999999752 33322221 02
Q ss_pred CCceeEEeecCC-C-EEEE-ecCCCeEEEEecccCe-eeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 81 PNSVDALLKLDE-D-RVIT-GSENGLISLVGILPNR-IIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 81 ~~~v~~~~~~~~-~-~l~~-~~~d~~v~~~d~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.+.+..+.++.. . .+++ .-.++.+.++|-.... +...+ .-|.. +|..+.+.+.+..+++....|.|.-|....
T Consensus 98 Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s-PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 98 PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS-PVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC-ceEEEEeeccccceeeccccceeEeecCCC
Confidence 223333333321 1 2333 3367889999976544 22222 33544 899999999999999998899999999884
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.019 Score=43.84 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=73.1
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc--------c--ccccee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--------K--DCSDRF 76 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--------~--~~~~~~ 76 (188)
|.+|+..+. +.|.+||+++++.++.+... +|..+.|++++++++..+.+ .+.+++.+.. + .....+
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 666666655 47999999999999888743 48999999999999988766 6778776531 0 022333
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.. -...|.+. |..+ .++-.+.. .++. +-.|..- .+..-.. +++-+.+.+..+.+.....|+.|..+.+..
T Consensus 193 ~E-~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~ld~-~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 193 HE-ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHLDK-PLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EE-E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE-SS---EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EE-ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEcCC-ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 22 24455555 5444 44333333 5544 3344421 2221112 677788888777888888888888887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0064 Score=42.45 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=52.5
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
|++++.|...+.+++.+.++|.....+.....--......+++..+..++.|++.+..|.+. ..++-..+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSK 132 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecc
Confidence 67789999999999999999987777664322222344567899999999999999999876 34444333
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.014 Score=41.03 Aligned_cols=151 Identities=12% Similarity=0.142 Sum_probs=86.5
Q ss_pred CeeecccCe-EEEEeCCCcEEEEEcCCCceeeeeccc-ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc-----
Q 029743 1 MTFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----- 73 (188)
Q Consensus 1 l~~s~~~~~-l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~----- 73 (188)
|+|+|+.+. +++....+.|..++. .|+.++.++-. .+-...|++..++.++++.-.++.+.++++......+
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~ 105 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADV 105 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhc
Confidence 478997665 555566788888886 47777766522 3568899998888888877778999999985422221
Q ss_pred ceee-----eccCCceeEE-eecCCCEEEEecCCCeEEEEeccc---Ceeee-----ecc---cCCCcceeEEEeeCCCC
Q 029743 74 DRFV-----GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQ-----PIA---EHSEYPIESLALSHDRK 136 (188)
Q Consensus 74 ~~~~-----~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~---~~~~~-----~~~---~~~~~~v~~~~~~~~~~ 136 (188)
+.+. . +....-.+ +.|.++.|+++.......+|.++. ...+. .+. .. -..+++++++|...
T Consensus 106 ~~~~l~~~~~-~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~S~l~~~p~t~ 183 (248)
T PF06977_consen 106 QKISLGFPNK-GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF-VRDLSGLSYDPRTG 183 (248)
T ss_dssp EEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT---SS---EEEEETTTT
T ss_pred eEEecccccC-CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce-eccccceEEcCCCC
Confidence 1111 1 23446778 789888888888777777777654 11111 011 11 12578899999654
Q ss_pred -EEEEEeCCCcEEEEeCCC
Q 029743 137 -FLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 137 -~l~~~~~d~~i~iwd~~~ 154 (188)
+++.......|..+|...
T Consensus 184 ~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 184 HLLILSDESRLLLELDRQG 202 (248)
T ss_dssp EEEEEETTTTEEEEE-TT-
T ss_pred eEEEEECCCCeEEEECCCC
Confidence 455555667777777443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00051 Score=56.06 Aligned_cols=101 Identities=18% Similarity=0.272 Sum_probs=70.8
Q ss_pred CCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcce
Q 029743 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI 126 (188)
Q Consensus 48 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v 126 (188)
.+..++.|+..|.+...|+...-.....-.. ...+|+++ |+.+|..++.|-.+|.|.+||+..++.++.+..+.. +.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~-v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a-p~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNER-VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA-PV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCc-cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC-cc
Confidence 4557888999999999988642111122222 46789999 799999999999999999999999988887765532 44
Q ss_pred eEEE---eeCCCCEEEEEeCCCcEEEEeC
Q 029743 127 ESLA---LSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 127 ~~~~---~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.++- +..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4443 3345556777766665 5544
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0091 Score=44.26 Aligned_cols=137 Identities=10% Similarity=0.035 Sum_probs=72.6
Q ss_pred eeecccCeEEEEeC---CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
+|.++|+.|+.++. ...+++.|+.+++..+.-.+.........++|+++.++.......++-.|+.+. +....+.-
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~-e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL-EERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC-cEEEEEEC
Confidence 57889988777655 457788899988876554443333446677888888876656668888888763 33333333
Q ss_pred ccCCceeEE-e--ecCCCEEEEec----------------------CCCeEEEEecccCeeeeecccCCCcceeEEEeeC
Q 029743 79 LSPNSVDAL-L--KLDEDRVITGS----------------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 79 ~~~~~v~~~-~--~~~~~~l~~~~----------------------~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 133 (188)
....+... + +.++.+++-.- ....|.-.|+++|+....+... . .+..+.|+|
T Consensus 121 -p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~-wlgH~~fsP 197 (386)
T PF14583_consen 121 -PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-D-WLGHVQFSP 197 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S--EEEEEEET
T ss_pred -CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-c-cccCcccCC
Confidence 33333222 3 45666654221 1123556677777766555544 3 688899999
Q ss_pred CCCEEEEEe
Q 029743 134 DRKFLGSIS 142 (188)
Q Consensus 134 ~~~~l~~~~ 142 (188)
....+++=+
T Consensus 198 ~dp~li~fC 206 (386)
T PF14583_consen 198 TDPTLIMFC 206 (386)
T ss_dssp TEEEEEEEE
T ss_pred CCCCEEEEe
Confidence 666555443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00059 Score=55.74 Aligned_cols=96 Identities=14% Similarity=0.239 Sum_probs=70.1
Q ss_pred cCeEEEEeCCCcEEEEEcCCCce-eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
+..++.|+..|.+-..|....-. ...-..-.++|++++|+.+|+.+..|-.+|.|.+||+.. +..++.+.. +..+..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e-~~ap~t 176 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITE-HGAPVT 176 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-Ccceeeeee-cCCccc
Confidence 34567777778877777654311 111123467899999999999999999999999999986 577888887 877777
Q ss_pred EE-e---ecCCCEEEEecCCCeE
Q 029743 86 AL-L---KLDEDRVITGSENGLI 104 (188)
Q Consensus 86 ~~-~---~~~~~~l~~~~~d~~v 104 (188)
.+ + ..++..++++...|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCce
Confidence 77 3 3455578888777763
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.023 Score=41.59 Aligned_cols=141 Identities=17% Similarity=0.157 Sum_probs=78.6
Q ss_pred cCeEEEEeCCCcEEEEEcCCCc-eeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-ccCCc
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNT-VQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNS 83 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~ 83 (188)
+.+|+++. .+.|++|++...+ ...... .....+.++.. .+++++.|.....+.++.++.....+..+.. .....
T Consensus 98 ~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 98 NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 33455444 4899999998776 433322 12224455544 4679999998888888877543333333322 02334
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEeccc-------C--eeeeecccCCCcceeEE---EeeCC--C------CEEEEEe
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILP-------N--RIIQPIAEHSEYPIESL---ALSHD--R------KFLGSIS 142 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~-------~--~~~~~~~~~~~~~v~~~---~~~~~--~------~~l~~~~ 142 (188)
++++ +-++++.++.+..+|.+.++.... + ........|-+..|+++ .+.|. + ..++.++
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T 254 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGT 254 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEE
T ss_pred EEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEe
Confidence 5566 554667999999999999988752 1 11111222223367777 55552 2 2377788
Q ss_pred CCCcEEEE
Q 029743 143 HDSMLKLW 150 (188)
Q Consensus 143 ~d~~i~iw 150 (188)
.+|.|.+.
T Consensus 255 ~~G~Ig~l 262 (321)
T PF03178_consen 255 VDGSIGVL 262 (321)
T ss_dssp TTS-EEEE
T ss_pred cCCEEEEE
Confidence 89888743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.016 Score=41.05 Aligned_cols=160 Identities=17% Similarity=0.146 Sum_probs=90.9
Q ss_pred eeecccCeEEEEeC-----CCcEEEEEcCCC-ceeeeecccccceEEEEEEeCCCEEEEecCC-----------------
Q 029743 2 TFAADAMKLLGTSG-----DGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----------------- 58 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-----d~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------- 58 (188)
.|||||.+|+..-. -|.|-|||...+ +.+..+..|.-....+.|.+||+.++.+...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 58999999988744 378899998854 4556777888888999999999999886431
Q ss_pred -CeEEEEEeCCcccccceeee---ccCCceeEE-eecCCCEEEEecCCCe-----EEEEecccCeeeeecccCCC-----
Q 029743 59 -GTVLLYSWGYFKDCSDRFVG---LSPNSVDAL-LKLDEDRVITGSENGL-----ISLVGILPNRIIQPIAEHSE----- 123 (188)
Q Consensus 59 -~~i~~~d~~~~~~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~d~~-----v~~~d~~~~~~~~~~~~~~~----- 123 (188)
-++.+.|..+ ++.+.+..- .+.-.++.+ ..++|+.++.+...|. -.+=-...++++.-+....+
T Consensus 200 ePSlvlld~at-G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~ 278 (366)
T COG3490 200 EPSLVLLDAAT-GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAF 278 (366)
T ss_pred CccEEEEeccc-cchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHH
Confidence 1222333222 222221110 012234444 3556665554433221 11111223444433332211
Q ss_pred -cceeEEEeeCCCCEEEEEe-CCCcEEEEeCCCccCCCCCC
Q 029743 124 -YPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 124 -~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~ 162 (188)
.-|-+++.+.+...++..+ ..+..-+||..++.......
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 1366778876666665444 55678899999987654433
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.011 Score=44.49 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=71.7
Q ss_pred ceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc------------------------------------------cccee
Q 029743 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD------------------------------------------CSDRF 76 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------------------------------------------~~~~~ 76 (188)
.|+.+.|++...-|+++...|.|.+|.....+. +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 467777888777788888888877776532100 00011
Q ss_pred eeccCCceeEEeecCCCEEEEecCCCeEEEEecccCeeeee--ccc-----CCCcceeEEEeeC-----CC---CEEEEE
Q 029743 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQP--IAE-----HSEYPIESLALSH-----DR---KFLGSI 141 (188)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~--~~~-----~~~~~v~~~~~~~-----~~---~~l~~~ 141 (188)
.. ..++|+++...+=.+++.|..+|.+.|.|+|....+.. +.. .....|+++.|.. |+ -.|++|
T Consensus 83 ~~-~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DA-KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ----S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred ec-cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 22 45678888656777999999999999999987765544 111 1223577888862 33 357788
Q ss_pred eCCCcEEEEeCC
Q 029743 142 SHDSMLKLWDLD 153 (188)
Q Consensus 142 ~~d~~i~iwd~~ 153 (188)
...|.+.+|.+-
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 889999999885
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.02 Score=40.18 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=76.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCc------eeeeec-----ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC--
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNT------VQTRSE-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-- 68 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-- 68 (188)
++..++.++++--+++.+.++.+.... ....+. .+...+..++|.|.++.|+.+-...-..+|.++.
T Consensus 71 ~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 71 TYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp EE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred EEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 344456566655557889888884311 111111 2445689999999888888887776677777753
Q ss_pred ccccccee-----e--eccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCC--------CcceeEEEe
Q 029743 69 FKDCSDRF-----V--GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHS--------EYPIESLAL 131 (188)
Q Consensus 69 ~~~~~~~~-----~--~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~--------~~~v~~~~~ 131 (188)
....+... . ......+.++ ++| .+.+++....+..|..+| ..|+.+..+.-.. -.+.-.|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEE
Confidence 11111111 0 0022335566 677 456777777888899999 5566554432111 025778999
Q ss_pred eCCCCEEEEEeCCCcEEEE
Q 029743 132 SHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iw 150 (188)
.++|+..++ +.-+.+++|
T Consensus 230 d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 230 DPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -TT--EEEE-ETTTEEEEE
T ss_pred CCCCCEEEE-cCCceEEEe
Confidence 999965554 456666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.035 Score=42.15 Aligned_cols=63 Identities=10% Similarity=0.165 Sum_probs=41.1
Q ss_pred eeecccCeEEEEeCC----------C-cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEe
Q 029743 2 TFAADAMKLLGTSGD----------G-TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d----------~-~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 66 (188)
+.+|.|..+|..-.+ . .|+||+.. |+++..+.-..+.+.++.|+.+ ..|++-..||.+++||+
T Consensus 35 a~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 35 AVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeC
Confidence 345556566655333 1 47888844 5566665544478999999874 45556667888888887
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.028 Score=40.04 Aligned_cols=154 Identities=10% Similarity=0.124 Sum_probs=98.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecc-cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR---- 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---- 75 (188)
+.|+|+.+.|++......-.|+--..|+.++.++- .-.....+++..++++.++--.++.+.++.+......+..
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~ 170 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQK 170 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceE
Confidence 57999999999988888877777778888887761 1234567888888888888888888888888643221111
Q ss_pred -----eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee---eeecccCCC------cceeEEEeeCCC-CEEE
Q 029743 76 -----FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI---IQPIAEHSE------YPIESLALSHDR-KFLG 139 (188)
Q Consensus 76 -----~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~---~~~~~~~~~------~~v~~~~~~~~~-~~l~ 139 (188)
... .......+ +.|....|+.+-..+-+.||....... ......+.. ..|+++.|++.. ..|+
T Consensus 171 i~L~~~~k-~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 171 IPLGTTNK-KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred EeccccCC-CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEE
Confidence 111 12334556 688888888888888888877653221 111111110 147778888744 4455
Q ss_pred EEeCCCcEEEEeCCCc
Q 029743 140 SISHDSMLKLWDLDDI 155 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (188)
-+.+++.+.-.|....
T Consensus 250 LS~ESr~l~Evd~~G~ 265 (316)
T COG3204 250 LSDESRRLLEVDLSGE 265 (316)
T ss_pred EecCCceEEEEecCCC
Confidence 5556666666665543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.021 Score=44.43 Aligned_cols=149 Identities=13% Similarity=0.055 Sum_probs=87.3
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeeccccc------ceE--EEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE------ELT--SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
+..++.++.++.|+-+|.++|+.+........ .+. .+... ++..++.++.++.|.-+|.++ ++.+-....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T-G~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET-GKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC-CCEeeeecC
Confidence 45677778889999999999988776653221 010 11111 226788888899999999987 454444432
Q ss_pred ccCC--ceeEE-eec--CCCEEEEec---------CCCeEEEEecccCeeeeecccCCC-------------------cc
Q 029743 79 LSPN--SVDAL-LKL--DEDRVITGS---------ENGLISLVGILPNRIIQPIAEHSE-------------------YP 125 (188)
Q Consensus 79 ~~~~--~v~~~-~~~--~~~~l~~~~---------~d~~v~~~d~~~~~~~~~~~~~~~-------------------~~ 125 (188)
... .-..+ .+| .+..++.++ .++.|..+|..+|+.+..+..... ..
T Consensus 139 -~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 -NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred -CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 211 00111 122 234455553 357888999999987766543211 01
Q ss_pred e-eEEEeeCCCCEEEEEeCCC------------------cEEEEeCCCccCC
Q 029743 126 I-ESLALSHDRKFLGSISHDS------------------MLKLWDLDDILKG 158 (188)
Q Consensus 126 v-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~ 158 (188)
+ ...++.+.+..++.++.++ .|.-+|+++++..
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 1 1244555556677676554 6888888877643
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=33.63 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=28.4
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeC
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 67 (188)
...|..++|+|....|+.+..+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.049 Score=40.72 Aligned_cols=138 Identities=7% Similarity=-0.030 Sum_probs=71.2
Q ss_pred CeeecccCeEEEEe-----------CCC-cEEEEEcCC--Cce--eeeecccccceEEEEEEeCCCEEEEecCCCeEEEE
Q 029743 1 MTFAADAMKLLGTS-----------GDG-TLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (188)
Q Consensus 1 l~~s~~~~~l~~~~-----------~d~-~i~i~~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 64 (188)
|+|.++|+++++-. ..+ .|.+++-.+ |.. ...+-..-.....+++.+++ . ++++.....++.
T Consensus 19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-l-yV~~~~~i~~~~ 96 (367)
T TIGR02604 19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-V-YVATPPDILFLR 96 (367)
T ss_pred eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-E-EEeCCCeEEEEe
Confidence 57888998777643 123 677776442 322 22333223456889999888 4 444444333333
Q ss_pred EeCCccc---ccc-eeeec--c----CCceeEE-eecCCCEEEEecC-------------------CCeEEEEecccCee
Q 029743 65 SWGYFKD---CSD-RFVGL--S----PNSVDAL-LKLDEDRVITGSE-------------------NGLISLVGILPNRI 114 (188)
Q Consensus 65 d~~~~~~---~~~-~~~~~--~----~~~v~~~-~~~~~~~l~~~~~-------------------d~~v~~~d~~~~~~ 114 (188)
|.+..+. ... .+.+. . ......+ +.|+|.+.++-+. .+.|.-++...++.
T Consensus 97 d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~ 176 (367)
T TIGR02604 97 DKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL 176 (367)
T ss_pred CCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE
Confidence 4432110 111 11210 1 1224455 6899886554441 13455556554443
Q ss_pred eeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 115 IQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 115 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
...-.+. . ....++|+++|+++++-.
T Consensus 177 e~~a~G~-r-np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 177 RVVAHGF-Q-NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEEecCc-C-CCccceECCCCCEEEEcc
Confidence 2222233 2 467899999998876544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0018 Score=32.85 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=27.4
Q ss_pred ceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 125 PIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 125 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.|..++|+|....||.+..+|.|.+|.++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 69999999999999999999999999984
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.074 Score=38.94 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=39.2
Q ss_pred EEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEEE-eCCCcEEEEeCCCccCCCCC
Q 029743 104 ISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSI-SHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 104 v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~d~~i~iwd~~~~~~~~~~ 161 (188)
|.++|+.+++.+..+... . ++.+|..+.+.+ .|++. ..++.|.+||..+++.....
T Consensus 271 VWv~D~~t~krv~Ri~l~-~-~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPLE-H-PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEETTTTEEEEEEEEE-E-EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEEECCCCeEEEEEeCC-C-ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 667777777777777643 2 678899998765 66554 45789999999998765433
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.073 Score=38.75 Aligned_cols=145 Identities=17% Similarity=0.127 Sum_probs=80.7
Q ss_pred eecccCeEE-EEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee----
Q 029743 3 FAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV---- 77 (188)
Q Consensus 3 ~s~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---- 77 (188)
|.++.+.|+ +--..+.|+-|+..+++. ..+. +...+.++.....+..|+++.. .+.+++.+.. .....+.
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~-~~~t~~~~~~~ 106 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTG-GKITLLAEPED 106 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCC-ceeEEeccccC
Confidence 556666444 334467888888776643 2333 3344555555555556666543 3556666432 2212221
Q ss_pred eccCCceeEE-eecCCCEEEEecC-----------CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC-C
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSE-----------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-D 144 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-----------d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 144 (188)
+........+ ..|+|.+.+.... -|.|+.++. .+..++.+..+-. .-+.|+|+||++.|+.+.. .
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~-~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT-IPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE-ecCceEECCCCCEEEEEeCCC
Confidence 1011223334 5788887765444 133444443 4555555555323 4678999999988876654 4
Q ss_pred CcEEEEeCCC
Q 029743 145 SMLKLWDLDD 154 (188)
Q Consensus 145 ~~i~iwd~~~ 154 (188)
+.|.-|++..
T Consensus 185 ~~i~r~~~d~ 194 (307)
T COG3386 185 NRIHRYDLDP 194 (307)
T ss_pred CeEEEEecCc
Confidence 8888888874
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.039 Score=42.37 Aligned_cols=143 Identities=11% Similarity=0.101 Sum_probs=90.1
Q ss_pred ccCeEE-EEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCC-------EEEEecCCCeEEEEEeCCcccccceee
Q 029743 6 DAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-------KVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 6 ~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
+..+|+ .|+....++-.|++.|+.+....-|... -+.|.|+.+ .-++|-.+..|.-.|.+..+..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 444444 3444567888888889888887766554 556666432 223444555666667665554444333
Q ss_pred eccCCcee-----EEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 78 GLSPNSVD-----ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 78 ~~~~~~v~-----~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
. ...++ +.......++++++..|.|++||--.-+....+.+..+ .|..+..+.+|++++..+ ...+.+-|+
T Consensus 556 s--KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTC-k~yllL~d~ 631 (776)
T COG5167 556 S--KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATC-KNYLLLTDV 631 (776)
T ss_pred e--hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEee-cceEEEEec
Confidence 2 22222 22234567999999999999999543333444555544 799999999999887655 456777776
Q ss_pred CC
Q 029743 153 DD 154 (188)
Q Consensus 153 ~~ 154 (188)
+-
T Consensus 632 ~i 633 (776)
T COG5167 632 PI 633 (776)
T ss_pred cc
Confidence 54
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0044 Score=51.30 Aligned_cols=137 Identities=15% Similarity=0.019 Sum_probs=86.0
Q ss_pred eecccCeEEEEe--CCCcEEEEEcCCCce-----eeee------cccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCC
Q 029743 3 FAADAMKLLGTS--GDGTLSVCNLRKNTV-----QTRS------EFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 3 ~s~~~~~l~~~~--~d~~i~i~~~~~~~~-----~~~~------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~ 68 (188)
.++|+...++.. .+..|..||++.-.. ...+ ........++.|+|.- ...+.+..|+.|++..+..
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 345655544443 334778899864211 1111 1223346678898853 4456777888898888764
Q ss_pred cccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccC---CCcceeEEEeeCCCCEEEEEe
Q 029743 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH---SEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~ 142 (188)
....+..+. -....+++ |+|.|+.++.|-..|++..|-.. .+....+... ..+.|.+++|-....+|++-+
T Consensus 188 ~~~~v~s~p--~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 188 LAQNVTSFP--VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred hhhhhcccC--cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 333333333 34567788 89999999999999999988754 3333333221 125799999998887776443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.057 Score=37.34 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=60.2
Q ss_pred ceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcc-c-----ccceeee---c-cCCceeEE-eecCCCEEEEecCCCeEEE
Q 029743 39 ELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFK-D-----CSDRFVG---L-SPNSVDAL-LKLDEDRVITGSENGLISL 106 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~-~-----~~~~~~~---~-~~~~v~~~-~~~~~~~l~~~~~d~~v~~ 106 (188)
--..++|+.+.+.+. +-+.+-+|.-||.+... . .+-.++. . +.. .-.+ ...+|.+.++.-+.++|..
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-PDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-CCcceEccCCcEEEEEecCcEEEE
Confidence 346788988776665 45556678778853211 1 1111111 0 111 1112 3457788888888899999
Q ss_pred EecccCeeeeecccCCCcceeEEEeeC
Q 029743 107 VGILPNRIIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 107 ~d~~~~~~~~~~~~~~~~~v~~~~~~~ 133 (188)
.|+.+|+.+.++.-+.. +|++++|--
T Consensus 238 ~dp~tGK~L~eiklPt~-qitsccFgG 263 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTP-QITSCCFGG 263 (310)
T ss_pred ECCCCCcEEEEEEcCCC-ceEEEEecC
Confidence 99999999998887766 899999963
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.015 Score=47.34 Aligned_cols=97 Identities=14% Similarity=0.223 Sum_probs=66.3
Q ss_pred eEEEEeCCCcEEEEEcCCC-c-eee-eec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 9 KLLGTSGDGTLSVCNLRKN-T-VQT-RSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~-~-~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
..+.|-.++.+..||.+-. . ++. ... .......|++-+.+ -+||+|+.+|.|++||- .+.+....+.+ -+.+
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~-lG~p 620 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPG-LGDP 620 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCC-CCCC
Confidence 4566777889999998753 2 221 111 12334666665554 47899999999999994 33455555666 7889
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEec
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~ 109 (188)
|..+ .+.||+++++.+... +.|++.
T Consensus 621 I~~iDvt~DGkwilaTc~ty-LlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTADGKWILATCKTY-LLLIDT 646 (794)
T ss_pred eeEEEecCCCcEEEEeecce-EEEEEE
Confidence 9999 799999988777654 556664
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.068 Score=37.81 Aligned_cols=139 Identities=15% Similarity=0.060 Sum_probs=80.3
Q ss_pred eeecccCeEEEEe---CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEe-CCcccccceee
Q 029743 2 TFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW-GYFKDCSDRFV 77 (188)
Q Consensus 2 ~~s~~~~~l~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~-~~~~~~~~~~~ 77 (188)
++|++++.++... ....++++.. +.....+. ....+....|++++...+....+...+++.. .........+.
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~ 106 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD 106 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec
Confidence 6789998887765 2334555443 32222221 2237888899999877776666666666632 22111111122
Q ss_pred ec-cCCceeEE-eecCCCEEEEec---CCCeEEEEecc---cC------eeeeecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 78 GL-SPNSVDAL-LKLDEDRVITGS---ENGLISLVGIL---PN------RIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 78 ~~-~~~~v~~~-~~~~~~~l~~~~---~d~~v~~~d~~---~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
.. ....|..+ ++|||..++... .++.|.+--+. .+ .+......... .+..+.|.+++.+++.+..
T Consensus 107 ~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~-~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 107 WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS-DVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC-cceeeeecCCCEEEEEeCC
Confidence 10 11278888 899999887665 34677776543 23 11222222223 6899999999987766654
Q ss_pred C
Q 029743 144 D 144 (188)
Q Consensus 144 d 144 (188)
.
T Consensus 186 ~ 186 (253)
T PF10647_consen 186 A 186 (253)
T ss_pred C
Confidence 3
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.028 Score=43.72 Aligned_cols=117 Identities=8% Similarity=-0.013 Sum_probs=70.7
Q ss_pred cccceEEEEEEeCC----CEEEEecCCCeEEEEEeCCcc----cccceeeeccC-----CceeEEeecCCCEEEEecCCC
Q 029743 36 SEEELTSVVLMKNG----RKVVCGSQSGTVLLYSWGYFK----DCSDRFVGLSP-----NSVDALLKLDEDRVITGSENG 102 (188)
Q Consensus 36 ~~~~v~~~~~~~~~----~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~~d~ 102 (188)
.-..|..+.|.|-+ ..+.+.-....|.+|.+.... +.+........ -+-.|+|+|....|++-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 34568999999843 244444556689999985211 11111111011 234567999988887766555
Q ss_pred eEEEEecccCe--eeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCC
Q 029743 103 LISLVGILPNR--IIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (188)
Q Consensus 103 ~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (188)
.-.+++++... ....+.+. + .|.|.+|.+||+.|+.+- ..=.-++||-..
T Consensus 135 vSV~~sV~~d~srVkaDi~~~-G-~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIKTS-G-LIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eeEeeeeeeCCceEEEeccCC-c-eEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 44467776433 33334443 4 799999999999887554 333567777443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.054 Score=42.16 Aligned_cols=106 Identities=8% Similarity=0.006 Sum_probs=64.3
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe------------------cCCCeEEEEEeCCcc
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG------------------SQSGTVLLYSWGYFK 70 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~d~~i~~~d~~~~~ 70 (188)
.++.++.+|.++.+|.++|+.+...... ...+..+| ..++.+ ..++.+.-.|+.++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG- 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG- 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC-
Confidence 5777888999999999999988765421 01122233 222221 23466777777653
Q ss_pred cccceeeeccC--------Cce-eEEeecCCCEEEEecCCCeEEEEecccCeeeeecccC
Q 029743 71 DCSDRFVGLSP--------NSV-DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 71 ~~~~~~~~~~~--------~~v-~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 121 (188)
+.+-.... .. .+. .......+..+++++.+|.|+.+|.++|+.+..++..
T Consensus 377 ~~~W~~~~-~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 377 KVVWEKRE-GTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred cEeeEeeC-CccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 33332221 10 111 1111235678889999999999999999988776654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.082 Score=42.11 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=70.4
Q ss_pred ceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc-cceeeeccCCceeEE-e--ecCCCEEEEecCCCeEEEEecc----
Q 029743 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-SDRFVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGIL---- 110 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~v~~~-~--~~~~~~l~~~~~d~~v~~~d~~---- 110 (188)
.+.-+.-+.-++..++-+....+.|||.+...-. ...+ . ....|..+ | .|+|+.+++.+-.+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~-~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-S-EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-c-CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444444555555556556678999999753211 1112 2 46788888 6 6899999988888889888631
Q ss_pred -----cCeeeeec--ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 111 -----PNRIIQPI--AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 111 -----~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
+..+++.+ ..+...+|.+..|.++|..++.+ ++.+.|++-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 11223322 33333379999999999666533 5678888754
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.087 Score=37.55 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=82.6
Q ss_pred Ceeeccc-CeEEEEeCCCc-EEEEEcCCCceeeeecccccc--eEEEEEEeCCCEEEEecCC-----CeEEEEEeCCccc
Q 029743 1 MTFAADA-MKLLGTSGDGT-LSVCNLRKNTVQTRSEFSEEE--LTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~-~~l~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~ 71 (188)
|+|+|-. +-++.+-.-|+ ..++|....+.+.++.....+ .-.=.|+|+|++|+..-.| |.|=+||.+..-+
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 3455532 33444444443 356777766554444321111 1233589999999876544 6899999986545
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecCC-------C-----------eEEEEecccCeeeeecc----cCCCcceeE
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSEN-------G-----------LISLVGILPNRIIQPIA----EHSEYPIES 128 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-------~-----------~v~~~d~~~~~~~~~~~----~~~~~~v~~ 128 (188)
.+..+.. |.-....+ +.+||+.++.+... | .+.+.|..+|+.+.+.. .+.- .|..
T Consensus 153 rvgE~~t-~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l-SiRH 230 (366)
T COG3490 153 RVGEFST-HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL-SIRH 230 (366)
T ss_pred eeccccc-CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc-ceee
Confidence 5566666 76666777 79999988876531 1 23445545555443322 1112 5778
Q ss_pred EEeeCCCCEEEEEe
Q 029743 129 LALSHDRKFLGSIS 142 (188)
Q Consensus 129 ~~~~~~~~~l~~~~ 142 (188)
++..+||+.++.+-
T Consensus 231 ld~g~dgtvwfgcQ 244 (366)
T COG3490 231 LDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeCCCCcEEEEEE
Confidence 88888887666543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0059 Score=41.64 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=57.2
Q ss_pred cCeEEEEeCCCcEEEEEcCC-CceeeeecccccceEEEE-EEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC-Cc
Q 029743 7 AMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVV-LMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NS 83 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~ 83 (188)
+..+++|+.+|.|++|+... +........-...+.++. -..++.+..++..++.|+.|++.. ...+...-. |. .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~-h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQ-HNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecc-ccCCC
Confidence 45688899999999998763 222112221222232222 222445788999999999999864 333333333 44 33
Q ss_pred eeEE-eecCCCEEEEe--cCCCeEEEEecc
Q 029743 84 VDAL-LKLDEDRVITG--SENGLISLVGIL 110 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~--~~d~~v~~~d~~ 110 (188)
...+ ....++.+... +.+..++.|++.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchh
Confidence 3333 24444555555 555566666654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.056 Score=42.80 Aligned_cols=144 Identities=8% Similarity=0.062 Sum_probs=73.2
Q ss_pred ccCeEEEEeCCC-----cEEEEEcCCCce--eeeecccccceEEEEEEeCCCEEEEecCCC-------------------
Q 029743 6 DAMKLLGTSGDG-----TLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSG------------------- 59 (188)
Q Consensus 6 ~~~~l~~~~~d~-----~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------- 59 (188)
+++..+.|+.++ .+..||..+.+= +..++........+ .-+++..+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence 566667777643 477888776532 11222111111122 23677777777542
Q ss_pred ----eEEEEEeCCcccccceeeec-cCCceeEEeecCCCEEEEecCC------CeEEEEeccc-Ce--eeeecccCCCcc
Q 029743 60 ----TVLLYSWGYFKDCSDRFVGL-SPNSVDALLKLDEDRVITGSEN------GLISLVGILP-NR--IIQPIAEHSEYP 125 (188)
Q Consensus 60 ----~i~~~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d------~~v~~~d~~~-~~--~~~~~~~~~~~~ 125 (188)
.+..||..+. ....+..- ....-.++..-+++..+.|+.+ ..+..||..+ .+ .+..+..... .
T Consensus 429 ~~~~~ve~YDP~td--~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNN--IWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-A 505 (557)
T ss_pred cccceEEEECCCCC--eEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-c
Confidence 4666776542 11111110 0001112234456666677643 2467899886 33 3344433321 1
Q ss_pred eeEEEeeCCCCEEEEEeCCC--cEEEEeCCCcc
Q 029743 126 IESLALSHDRKFLGSISHDS--MLKLWDLDDIL 156 (188)
Q Consensus 126 v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~ 156 (188)
...+++ +++..++|+.++ .+..||..+.+
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 222222 677888888887 67778877655
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.065 Score=40.49 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=59.5
Q ss_pred CCcEEEEEcCCCceeeeeccc--ccceEEEEEEeCC--CE-EEEecCCCeEEEEEeCCcc----ccccee----------
Q 029743 16 DGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNG--RK-VVCGSQSGTVLLYSWGYFK----DCSDRF---------- 76 (188)
Q Consensus 16 d~~i~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~--~~-l~~~~~d~~i~~~d~~~~~----~~~~~~---------- 76 (188)
..++++||+.+.+.++++.-- ...+..+.|..+. .+ ++.+.-..+|..|--...+ +.+-.+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 468999999999998888622 2346677776543 33 3333334455554331111 011111
Q ss_pred -------eeccCCceeEE-eecCCCEEEEec-CCCeEEEEecccC---eeeeecccC--------C-------CcceeEE
Q 029743 77 -------VGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPN---RIIQPIAEH--------S-------EYPIESL 129 (188)
Q Consensus 77 -------~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~---~~~~~~~~~--------~-------~~~v~~~ 129 (188)
.. -..-++.+ .|.|.++|+..+ ..|.|+.||+... +.+.++.-. . .+...-+
T Consensus 301 p~ml~~~~~-~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 301 PEMLKPFGA-VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp -GGGGGG-E-E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccc-CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 11 12346677 689999988776 6899999999642 222221100 0 0124667
Q ss_pred EeeCCCCEEEEEe
Q 029743 130 ALSHDRKFLGSIS 142 (188)
Q Consensus 130 ~~~~~~~~l~~~~ 142 (188)
..|.||+.|...+
T Consensus 380 qlS~DGkRlYvTn 392 (461)
T PF05694_consen 380 QLSLDGKRLYVTN 392 (461)
T ss_dssp EE-TTSSEEEEE-
T ss_pred EEccCCeEEEEEe
Confidence 7888998886553
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.14 Score=40.34 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=32.5
Q ss_pred CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE
Q 029743 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 91 ~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
.+.+++.+..+|.++.+|.++|+.+..++......-.-+.|.-+|+..
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qY 518 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQY 518 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEE
Confidence 456777888899999999999999887765532122233444466543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.14 Score=37.25 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=68.0
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce----eee
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----FVG 78 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~ 78 (188)
-+++|++++++.....+.-|+.-...-...-.....+|..+.|.|++...+++ ..+.|+.=+.......... +..
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc
Confidence 46789888887664444566643221111122345789999999998776655 7888888773221111111 111
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeeccc---CCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
....+..+ +.+++...++|+. |.+ +...+.|+.-..... -.. ..+.+.|.++.+-++. +.+|.|.-|
T Consensus 231 -~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~-n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 231 -NGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPS-NLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp ---S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS----EEEEEETTEEEEE--STTEEEEE
T ss_pred -CceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCC-ceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 22335666 5666666665554 444 445555553333221 112 5788888766555544 467777655
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.16 Score=40.00 Aligned_cols=143 Identities=12% Similarity=0.009 Sum_probs=69.1
Q ss_pred ccCeEEEEeCC-----CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC------CeEEEEEeCCcccc
Q 029743 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDC 72 (188)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~ 72 (188)
+++..+.|+.+ ..+..||..+++-.. .++..... .++ ..-+++..+.|+.. ..+..||..+. .
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTN--K 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceE-EEECCEEEEECCcCCCCcccceEEEEeCCCC--e
Confidence 45666677654 346677876543221 12111111 112 22356666777632 35788887642 1
Q ss_pred cceeeeccCCc--eeEEeecCCCEEEEecCC--------CeEEEEecccCeee--eecccCCCcceeEEEeeCCCCEEEE
Q 029743 73 SDRFVGLSPNS--VDALLKLDEDRVITGSEN--------GLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 73 ~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d--------~~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
...... ...+ -.++...++...+.|+.+ ..+.+||..+.+-. ..+..... ....+.+ +++.++.
T Consensus 418 W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~~--~~~iyv~ 493 (534)
T PHA03098 418 WSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI-NASLCIF--NNKIYVV 493 (534)
T ss_pred eeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc-cceEEEE--CCEEEEE
Confidence 111111 1111 112233456666666642 23888998765432 22221111 1112222 6666677
Q ss_pred EeCC-----CcEEEEeCCCcc
Q 029743 141 ISHD-----SMLKLWDLDDIL 156 (188)
Q Consensus 141 ~~~d-----~~i~iwd~~~~~ 156 (188)
|+.+ +.|.+||..+..
T Consensus 494 GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcCCcccceeEEEeCCCCE
Confidence 7643 468888887654
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.00022 Score=53.54 Aligned_cols=140 Identities=12% Similarity=0.171 Sum_probs=93.8
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
.|-|.+..++.++.+..+..||-. ++....+. .+.....++|..++..++ .+-..+.+.+||+.. +..+.+.. .
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~--eytqqLE~-g 115 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS--EYTQQLES-G 115 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhh--hhHHHHhc-c
Confidence 456777778888888888888844 33333332 455677888988776654 566678999999974 33344433 2
Q ss_pred CCceeEE--eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 81 PNSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 81 ~~~v~~~--~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
.....++ |++.+..++.+...+.+.+|+..+.+.+...-.|.. .+.++++.+.+. .+.++.|..+.
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R-Rgtq~av~lEd~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR-RGTQIAVTLEDY-VILCDCDNTLS 183 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc-ceeEEEecccce-eeecCcHHHHH
Confidence 2233333 688888888898899999999887766555544644 788999988764 44455454433
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.2 Score=37.92 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=83.6
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeec--c------cccceEEEEEEe-----CC---CEEEEecCCCeEEEEEeCC-
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--F------SEEELTSVVLMK-----NG---RKVVCGSQSGTVLLYSWGY- 68 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~l~~~~~d~~i~~~d~~~- 68 (188)
|=.++|.|..+|.+.|.|++....+..-. . ....++++.|+. |+ -.+++|...|.+.+|.+-.
T Consensus 96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 44589999999999999998876654421 1 234678888873 22 3678889999999998742
Q ss_pred -ccccccee----eeccCCceeEE--eecC-C-------------------CEEEEecCCCeEEEEecccCeeeeecccC
Q 029743 69 -FKDCSDRF----VGLSPNSVDAL--LKLD-E-------------------DRVITGSENGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 69 -~~~~~~~~----~~~~~~~v~~~--~~~~-~-------------------~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 121 (188)
.+.....+ .. +..++..+ ++.+ | ..++....+..++++.+.+.+........
T Consensus 176 ~~g~f~v~~~~~~~~-~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~ 254 (395)
T PF08596_consen 176 SNGRFSVQFAGATTN-HDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDD 254 (395)
T ss_dssp GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS
T ss_pred CCCceEEEEeecccc-CCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecc
Confidence 11111111 12 34444444 2211 1 12344455667999998776655444322
Q ss_pred CCcceeEEEee-----CCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 122 SEYPIESLALS-----HDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 122 ~~~~v~~~~~~-----~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
......+.+- ..+..|+.-..+|.|++|.+...+..
T Consensus 255 -~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 255 -PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp --EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred -ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 1234445553 24566777789999999999887644
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.2 Score=39.79 Aligned_cols=141 Identities=11% Similarity=0.094 Sum_probs=68.6
Q ss_pred ccCeEEEEeCC------CcEEEEEcCCCcee--eeecccccceEEEEEEeCCCEEEEecCCC-----eEEEEEeCCcccc
Q 029743 6 DAMKLLGTSGD------GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDC 72 (188)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~ 72 (188)
++...+.|+.+ ..+..||+.++.-. ..++...... ....-+++..+.|+.++ .+..||..+. .
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~--~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SLAVIDDTIYAIGGQNGTNVERTIECYTMGDD--K 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eEEEECCEEEEECCcCCCCCCceEEEEECCCC--e
Confidence 45556666643 34677887665321 1111111111 12233677777887654 4778887642 1
Q ss_pred cceeeeccCCcee--EEeecCCCEEEEecCC-----------------------CeEEEEecccCee--eeecccCCCcc
Q 029743 73 SDRFVGLSPNSVD--ALLKLDEDRVITGSEN-----------------------GLISLVGILPNRI--IQPIAEHSEYP 125 (188)
Q Consensus 73 ~~~~~~~~~~~v~--~~~~~~~~~l~~~~~d-----------------------~~v~~~d~~~~~~--~~~~~~~~~~~ 125 (188)
...+.. -..+.. ++..-+|+..+.|+.+ ..+..||..+.+- +..+..... .
T Consensus 379 W~~~~~-mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~ 456 (557)
T PHA02713 379 WKMLPD-MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-R 456 (557)
T ss_pred EEECCC-CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-c
Confidence 111111 111111 1223467777777654 2477888876543 222221111 1
Q ss_pred eeEEEeeCCCCEEEEEeCC------CcEEEEeCCC
Q 029743 126 IESLALSHDRKFLGSISHD------SMLKLWDLDD 154 (188)
Q Consensus 126 v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~ 154 (188)
.+++ .-+++..+.|+.+ ..+..||..+
T Consensus 457 -~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 457 -PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred -CcEE-EECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 1222 2256666666643 2467788876
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.16 Score=35.91 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=66.1
Q ss_pred ceEEEEEEeCCCEEEEec---CCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEe-cccCe
Q 029743 39 ELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG-ILPNR 113 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d-~~~~~ 113 (188)
.+.+.+++++++.++... ....++++... +.....+.+ ..+... |++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g---~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG---GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC---CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999998776655 23345555433 233222233 244445 788888777777666666663 22332
Q ss_pred e-eeecccCCCc-ceeEEEeeCCCCEEEEEe---CCCcEEEEeCC
Q 029743 114 I-IQPIAEHSEY-PIESLALSHDRKFLGSIS---HDSMLKLWDLD 153 (188)
Q Consensus 114 ~-~~~~~~~~~~-~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~ 153 (188)
. ...+...... .|..+.++|||..++... .++.|.+--+.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 2 1122222111 799999999999887655 35677776554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.21 Score=37.15 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=74.8
Q ss_pred CeeecccCeEEEE--eCC---CcEEEEEcCCCceeeeecc-ccc---ceEEEEEE-eCC-CEEEEecCCCeEEEEEeCCc
Q 029743 1 MTFAADAMKLLGT--SGD---GTLSVCNLRKNTVQTRSEF-SEE---ELTSVVLM-KNG-RKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 1 l~~s~~~~~l~~~--~~d---~~i~i~~~~~~~~~~~~~~-~~~---~v~~~~~~-~~~-~~l~~~~~d~~i~~~d~~~~ 69 (188)
+.|+++++.|+.. .++ ..+.++|..++........ ... .-..+.+. +++ .+|.....+|--+||-++..
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 3578888744433 332 2456677776654333321 112 22355554 555 45555667776666655444
Q ss_pred ccccceeeeccCCceeEE--eecCCCEEE-EecCC----CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 70 KDCSDRFVGLSPNSVDAL--LKLDEDRVI-TGSEN----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~--~~~~~~~l~-~~~~d----~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+...+.+.. ....|..+ ++++++.++ ++..+ ..|+..++..+.....+....+ .-..+.|+|++++++...
T Consensus 269 ~~~~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 269 GGKPRQLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-DHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSEEEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-TTEEEEE-TTSSEEEEEE
T ss_pred ccceecccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-CceEEEECCCCCEEEEEE
Confidence 454556665 56667666 577766544 55542 2455556662334445554433 225899999999887443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.076 Score=40.21 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=59.7
Q ss_pred ecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEEe---ecCC----------------C
Q 029743 33 SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL---KLDE----------------D 93 (188)
Q Consensus 33 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~---~~~~----------------~ 93 (188)
+......+.+++.+|.+++.++...-|.|.++|+.. +..++.+++ ....-..-. .... .
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKG-YRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKG-YRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-Chhhhhhcc-CccceEEEEEeecccccccccccccCCCCcceE
Confidence 334455688999999999999988889999999976 677787777 544322111 1111 1
Q ss_pred -EEEEecCCCeEEEEecccCeeeeecccC
Q 029743 94 -RVITGSENGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 94 -~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 121 (188)
+++-+-..|.|.||.++.|..+..+...
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 1334456788999999888877766544
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.23 Score=36.50 Aligned_cols=150 Identities=11% Similarity=0.042 Sum_probs=85.9
Q ss_pred eeecccCeEEEEe----------CCCcEEEEEcCCCceeeeeccc---cc----ceEEEEEEeCCCEEEEe--cCCCeEE
Q 029743 2 TFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS---EE----ELTSVVLMKNGRKVVCG--SQSGTVL 62 (188)
Q Consensus 2 ~~s~~~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~---~~----~v~~~~~~~~~~~l~~~--~~d~~i~ 62 (188)
..||+++.++++. +...|.+||..+-.....+.-. .. ....++++.++++++.. +....|.
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVt 121 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVT 121 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEE
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEE
Confidence 5789999998764 2446889999987666544311 11 12345677788877653 3455788
Q ss_pred EEEeCCcccccceeeeccCCceeEEe-ecCCCEEEEecCCCeEEEEecc-cCeeeee----cccCCCcceeEEEeeCCCC
Q 029743 63 LYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGIL-PNRIIQP----IAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 63 ~~d~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d~~v~~~d~~-~~~~~~~----~~~~~~~~v~~~~~~~~~~ 136 (188)
+-|+.. ++.+..+.- .....++ ++ .+.+.+.|.||.+.-..+. .|+.... +....+.....-++...+.
T Consensus 122 VVDl~~-~kvv~ei~~---PGC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 122 VVDLAA-KKVVGEIDT---PGCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEETTT-TEEEEEEEG---TSEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred EEECCC-CceeeeecC---CCEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 888864 344444332 1122223 22 2468888999999888887 3443321 2222221122334555555
Q ss_pred EEEEEeCCCcEEEEeCCCcc
Q 029743 137 FLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~ 156 (188)
.++-.+.+|.|+--|+....
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSS
T ss_pred eEEEEecCCEEEEEeccCCc
Confidence 66667888888888877654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.017 Score=28.48 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=25.2
Q ss_pred ceeEEEeeCCC---CEEEEEeCCCcEEEEeCCC
Q 029743 125 PIESLALSHDR---KFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 125 ~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~ 154 (188)
.|.++.|+|.. .+|+.+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 68999999854 4778777889999999995
|
It contains a characteristic DLL sequence motif. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.37 Score=37.99 Aligned_cols=143 Identities=9% Similarity=0.003 Sum_probs=67.5
Q ss_pred ccCeEEEEeCC------CcEEEEEcCCCceeee--ecccccceEEEEEEeCCCEEEEecCC-----CeEEEEEeCCcccc
Q 029743 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDC 72 (188)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~ 72 (188)
++..++.|+.+ ..+..||..+.+-... ++........+ .-+++.++.|+.+ ..+..||..+. .
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGES--K 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCC--c
Confidence 34455666543 2567788776543221 11111112222 2367777777765 24667776532 1
Q ss_pred cceeeeccCCc--eeEEeecCCCEEEEecCC------CeEEEEecccCeeee--ecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 73 SDRFVGLSPNS--VDALLKLDEDRVITGSEN------GLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 73 ~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d------~~v~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
...... ...+ -.++..-+++..+.|+.. +.+..||+.+.+-.. .+..... -.+++ ..++..++.|+
T Consensus 370 W~~~~~-lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~--~~~~~-~~~~~iyv~GG 445 (534)
T PHA03098 370 WREEPP-LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY--GGCAI-YHDGKIYVIGG 445 (534)
T ss_pred eeeCCC-cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc--CceEE-EECCEEEEECC
Confidence 111111 1111 111223456666777632 458889987654322 2211111 11222 23556666665
Q ss_pred CC--------CcEEEEeCCCcc
Q 029743 143 HD--------SMLKLWDLDDIL 156 (188)
Q Consensus 143 ~d--------~~i~iwd~~~~~ 156 (188)
.+ ..+.+||..+..
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ccCCCCCcccceEEEecCCCCc
Confidence 32 238888887653
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.21 Score=35.77 Aligned_cols=119 Identities=9% Similarity=0.065 Sum_probs=73.6
Q ss_pred cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC
Q 029743 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (188)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~ 112 (188)
.+-...+.++.|+|+.+.|++......-.++ +...++.++++.-..-.....+ +..+|+++++-=.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVE-lt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVE-LTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEE-EecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3445569999999999998887766554444 3334676666532011223344 4556666666667788887776544
Q ss_pred eeee-------ec--ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 113 RIIQ-------PI--AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 113 ~~~~-------~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
..+. .+ ..+.......++|.|....|..+-+-.=+.||.+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 2111 11 11112246789999988888888777767777665
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.1 Score=39.65 Aligned_cols=112 Identities=16% Similarity=0.079 Sum_probs=65.4
Q ss_pred eEEEEEEeCCCEEEEe-cCC----CeEEEEEeCCcccccc-eeeeccCCceeEE-eecCCCEEEEecC-----------C
Q 029743 40 LTSVVLMKNGRKVVCG-SQS----GTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKLDEDRVITGSE-----------N 101 (188)
Q Consensus 40 v~~~~~~~~~~~l~~~-~~d----~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~-----------d 101 (188)
+....++|++++++.+ +.. ..++++|+.++ ..+. .+.. . ....+ |.++++.++.... .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~-~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN-P--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE-E--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc-c--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3467789999988754 333 36999999874 3332 2222 1 12225 8899887665542 2
Q ss_pred CeEEEEecccCee--eeecccCCCcc-eeEEEeeCCCCEEEEEe---CC-CcEEEEeCCCc
Q 029743 102 GLISLVGILPNRI--IQPIAEHSEYP-IESLALSHDRKFLGSIS---HD-SMLKLWDLDDI 155 (188)
Q Consensus 102 ~~v~~~d~~~~~~--~~~~~~~~~~~-v~~~~~~~~~~~l~~~~---~d-~~i~iwd~~~~ 155 (188)
..|+.|.+.+... ...+......- ...+..++++++|+... .+ ..+++.++...
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 2377787765432 13333332212 56788999999886443 23 45788888764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.44 Score=37.98 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=77.8
Q ss_pred ccCeEEEEeCC------CcEEEEEcCCCceeeeecccccceEEEEE-EeCCCEEEEecCCC-----eEEEEEeCCccccc
Q 029743 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (188)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~ 73 (188)
++...++|+.+ ..+..||...++=.. +..-..+-..... .-+|...++|+.|| ++..||..+ ...
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~--~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT--NKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC--Ccc
Confidence 45677788877 356677877654222 1111111112222 22678888898886 477777654 222
Q ss_pred ceeeeccCCceeEE--eecCCCEEEEecCCC------eEEEEecccCeee--eecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 74 DRFVGLSPNSVDAL--LKLDEDRVITGSENG------LISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 74 ~~~~~~~~~~v~~~--~~~~~~~l~~~~~d~------~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
..... ........ ..-+|...++|+.++ .+..||..++.-. ..+..... -..++. -++...+.|+.
T Consensus 409 ~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~--~~g~a~-~~~~iYvvGG~ 484 (571)
T KOG4441|consen 409 TPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS--GFGVAV-LNGKIYVVGGF 484 (571)
T ss_pred cccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc--cceEEE-ECCEEEEECCc
Confidence 22222 22222222 356788888887543 4778888776533 23322211 122332 25667777776
Q ss_pred CC-----cEEEEeCCCcc
Q 029743 144 DS-----MLKLWDLDDIL 156 (188)
Q Consensus 144 d~-----~i~iwd~~~~~ 156 (188)
|+ .|..||..+.+
T Consensus 485 ~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 485 DGTSALSSVERYDPETNQ 502 (571)
T ss_pred cCCCccceEEEEcCCCCc
Confidence 65 37778877654
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.075 Score=40.37 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=88.8
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCcee--eeecc-cc---cceE-EEEEEeCCCEEEEecCCCeEEEE-EeCCcccc-c
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEF-SE---EELT-SVVLMKNGRKVVCGSQSGTVLLY-SWGYFKDC-S 73 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~~-~~---~~v~-~~~~~~~~~~l~~~~~d~~i~~~-d~~~~~~~-~ 73 (188)
..|||++|+.-+. .++.|+++.+.... +.... .. ..|+ ++..-..|..+...+.||-|.-| |++..+.. +
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l 306 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHL 306 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcc
Confidence 5689999988766 78888887653221 11111 11 1122 12222346678888899988777 55433222 2
Q ss_pred ceeeec--cCCceeEEe-ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 74 DRFVGL--SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 74 ~~~~~~--~~~~v~~~~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
...+.. ....+..+. ..+.+.+++-+.+|++.++.....+.+..-..- + .+.-++++|++.+|++- ..|.++++
T Consensus 307 ~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-~-~~~~~~~Sp~~~~Ll~e-~~gki~~~ 383 (733)
T COG4590 307 NHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-Q-APQLVAMSPNQAYLLSE-DQGKIRLA 383 (733)
T ss_pred eeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-c-CcceeeeCcccchheee-cCCceEEE
Confidence 222110 112333331 234456778888898888875444433222222 3 46678999999998755 46889999
Q ss_pred eCCCccCCC
Q 029743 151 DLDDILKGS 159 (188)
Q Consensus 151 d~~~~~~~~ 159 (188)
.+++..++-
T Consensus 384 ~l~Nr~Pei 392 (733)
T COG4590 384 QLENRNPEI 392 (733)
T ss_pred EecCCCCCc
Confidence 999876543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.6 Score=38.25 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=19.3
Q ss_pred ceEEEEEEeCCCEEEEecCCCeEEEEEe
Q 029743 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 66 (188)
.|..+..+|+|++++..+..+ |.|-.+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 577888888888888877754 444444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.75 Score=37.62 Aligned_cols=105 Identities=10% Similarity=-0.041 Sum_probs=62.1
Q ss_pred eeecccCeEEEEeCC-----CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC------CeEEEEEeCCcc
Q 029743 2 TFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFK 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~ 70 (188)
.+|||+++|+.+... ..|++.|+.++..+...... .-..++|.++++.|+....+ ..|+.+++.+..
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 579999998877432 35888899887633222111 12569999999877665432 367777877642
Q ss_pred -cccceeeeccCCcee-EEe-ecCCCEEEEecC---CCeEEEEec
Q 029743 71 -DCSDRFVGLSPNSVD-ALL-KLDEDRVITGSE---NGLISLVGI 109 (188)
Q Consensus 71 -~~~~~~~~~~~~~v~-~~~-~~~~~~l~~~~~---d~~v~~~d~ 109 (188)
+....+.. ...... ..+ +.++++++..+. ++.+.+++.
T Consensus 211 ~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 211 SQDELVYEE-KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred hHCeEEEee-CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 22223333 233233 223 447887665443 456888884
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.55 Score=35.81 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=90.3
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCc-----eeeeecccccceEEEEEEe-----CCCEEEEecCCCeEEEEEeCCc-cc---
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF-KD--- 71 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~-~~--- 71 (188)
+...+++|+..|.++||+...+. .+... .-..+|..++..+ ....|++-.. ..+.+|.+... +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP-~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHP-RKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecC-CEEEEEEEEecCCCccc
Confidence 45678999999999999986432 12222 2456888887643 2245555443 46778877321 11
Q ss_pred ----ccceeeeccCCc--eeEE----e-ecC-CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEE
Q 029743 72 ----CSDRFVGLSPNS--VDAL----L-KLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 72 ----~~~~~~~~~~~~--v~~~----~-~~~-~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
.+..+.. |.-. ...+ | ... ..++.+=+.||.+.+|+-+.......+... - -...++|.+....++
T Consensus 114 g~~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-l-lPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 114 GNQYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF-L-LPGPLCYCPRTDSFV 190 (418)
T ss_pred CcEEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-C-CCcCeEEeecCCEEE
Confidence 1222222 3211 2222 2 233 346777789999999996654434444432 1 344678999888999
Q ss_pred EEeCCCcEEEEeCCCccCC
Q 029743 140 SISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~ 158 (188)
+++.+..|..|........
T Consensus 191 t~sss~~l~~Yky~~La~~ 209 (418)
T PF14727_consen 191 TASSSWTLECYKYQDLASA 209 (418)
T ss_pred EecCceeEEEecHHHhhhc
Confidence 9999999999987765443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.56 Score=35.74 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=72.8
Q ss_pred cccCeEEEEe--CC----CcEEEEEcCCCceeeeeccc---ccceEEEEEEeCCCEEEEecC------------------
Q 029743 5 ADAMKLLGTS--GD----GTLSVCNLRKNTVQTRSEFS---EEELTSVVLMKNGRKVVCGSQ------------------ 57 (188)
Q Consensus 5 ~~~~~l~~~~--~d----~~i~i~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~------------------ 57 (188)
|+|+.++++- .+ |-+.++|-++-+.+...... ...-..+.|.|.-+.++++..
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 5777777662 22 45677776665555544421 223456778887777777532
Q ss_pred --CCeEEEEEeCCcccccceeeeccC--CceeEE-e--ecCCCEEEEec-CCCeEEEEec-ccCe----eeeecccC---
Q 029743 58 --SGTVLLYSWGYFKDCSDRFVGLSP--NSVDAL-L--KLDEDRVITGS-ENGLISLVGI-LPNR----IIQPIAEH--- 121 (188)
Q Consensus 58 --d~~i~~~d~~~~~~~~~~~~~~~~--~~v~~~-~--~~~~~~l~~~~-~d~~v~~~d~-~~~~----~~~~~~~~--- 121 (188)
..++.+||+.. .+.++++.- .. ..+..+ | .|+..+-++++ ....|..|-- +.++ .+..+...
T Consensus 219 ~yG~~l~vWD~~~-r~~~Q~idL-g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 219 KYGHSLHVWDWST-RKLLQTIDL-GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp -S--EEEEEETTT-TEEEEEEES--TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccCeEEEEECCC-CcEeeEEec-CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 35899999986 577777653 22 223334 4 56666555444 4445555543 3332 12222110
Q ss_pred --------------CCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCCcc
Q 029743 122 --------------SEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDIL 156 (188)
Q Consensus 122 --------------~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (188)
.. -|+.|.+|.|.++|.... ..|.|+.||+....
T Consensus 297 ~~~lp~ml~~~~~~P~-LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPP-LITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp SS---GGGGGG-EE-------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cccccccccccccCCC-ceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 12 478999999999997666 68999999998754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.36 Score=37.52 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=48.8
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEec---------ccCeee---ee-------cccCCCcceeEEEeeCCC---CEEEE
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGI---------LPNRII---QP-------IAEHSEYPIESLALSHDR---KFLGS 140 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~---------~~~~~~---~~-------~~~~~~~~v~~~~~~~~~---~~l~~ 140 (188)
|..+ .++.|..++..+.+|.+.++=. ..|++. ++ +.....-.+..++|+|+. ..|..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 4455 5889999999999987654431 122211 11 111111256788999975 57777
Q ss_pred EeCCCcEEEEeCCCccCC
Q 029743 141 ISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 141 ~~~d~~i~iwd~~~~~~~ 158 (188)
-+.|+.|++||+......
T Consensus 186 L~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EecCcEEEEEecCCcchh
Confidence 888999999999876543
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.23 Score=34.34 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=48.1
Q ss_pred eecCCCEEEEecCCCeEEEEecccCeeeee-------cc-------cCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 88 LKLDEDRVITGSENGLISLVGILPNRIIQP-------IA-------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 88 ~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~-------~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
...++.++++.+.+|.+++||+.+++.+.. +. .... .|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~-~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSP-NITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCC-cEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 356788999999999999999998765322 11 1223 688899998887776654 5778888765
Q ss_pred Cc
Q 029743 154 DI 155 (188)
Q Consensus 154 ~~ 155 (188)
-.
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 43
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.081 Score=26.11 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=25.7
Q ss_pred cceEEEEEEeC-C--CEEEEecCCCeEEEEEeCC
Q 029743 38 EELTSVVLMKN-G--RKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 38 ~~v~~~~~~~~-~--~~l~~~~~d~~i~~~d~~~ 68 (188)
+.+.++.|+|. + .+|+.+-..+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 36889999984 4 5888888889999999984
|
It contains a characteristic DLL sequence motif. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.05 Score=44.55 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=81.7
Q ss_pred CcEEEEEcC--CCceee-----eecccccceEEEEEEe---CCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 17 GTLSVCNLR--KNTVQT-----RSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 17 ~~i~i~~~~--~~~~~~-----~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
|.+.||++. .|+... ........+.-+.|.| +.-++..+..++++++...+. .....+.+ |...+..
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r--a~~~l~rs-Hs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR--ALRSLFRS-HSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeech--HHHHHHHh-cCCCccc
Confidence 567888875 343222 2222333445555554 556677777888999888763 22344555 5443332
Q ss_pred ----------E--eecCCCEEEEecCCCeEEEEecc-----cCeeeeecccCCCcceeEEEeeCCC---------CEEEE
Q 029743 87 ----------L--LKLDEDRVITGSENGLISLVGIL-----PNRIIQPIAEHSEYPIESLALSHDR---------KFLGS 140 (188)
Q Consensus 87 ----------~--~~~~~~~l~~~~~d~~v~~~d~~-----~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~ 140 (188)
+ .+|||+.++.++.||.++.|.+. .-.|+...+.|.+++-.|..++.+. .++++
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 2 48999999999999998888764 2235555555643333333343321 12344
Q ss_pred Ee-CCCcEEEEeCCCccCC
Q 029743 141 IS-HDSMLKLWDLDDILKG 158 (188)
Q Consensus 141 ~~-~d~~i~iwd~~~~~~~ 158 (188)
++ ....+++|.....++.
T Consensus 310 ttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cccCCcceeEeeccchhhh
Confidence 44 4567889987766544
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.63 Score=33.89 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=57.6
Q ss_pred ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEec-ccC
Q 029743 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI-LPN 112 (188)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~-~~~ 112 (188)
.....+..+.-+++|++++++.......-|+-.. ..-+.........+..+ |.|++.+.+.+ ..|.|+.=+. ...
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 3446688888889999999887777677777532 22222222034678888 89998776655 7788877762 222
Q ss_pred ee----eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 113 RI----IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 113 ~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
+. +..+... +..+..++|.+++...++++ .|.+.
T Consensus 219 ~~w~~~~~~~~~~-~~~~ld~a~~~~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 219 ETWSEPIIPIKTN-GYGILDLAYRPPNEIWAVGG-SGTLL 256 (302)
T ss_dssp EEE---B-TTSS---S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred cccccccCCcccC-ceeeEEEEecCCCCEEEEeC-CccEE
Confidence 21 1112112 33588999999877777665 44443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.4 Score=34.15 Aligned_cols=102 Identities=12% Similarity=0.219 Sum_probs=59.5
Q ss_pred eCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeee---------
Q 029743 47 KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ--------- 116 (188)
Q Consensus 47 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~--------- 116 (188)
..++.|+.|..+| +.++++.......+ +. +...|..+ ..|+-+.+++-++ +.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~-i~--~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR-IL--KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee-Ee--ecceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccccc
Confidence 3578899998888 89999843223333 22 23347878 5676666665554 899999987543332
Q ss_pred ------ecccCCCcceeEEE--eeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 117 ------PIAEHSEYPIESLA--LSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 117 ------~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
.+... . .+...+ -...+...+.......|.+|.....
T Consensus 80 ~~~~~~~~~~~-~-~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~ 124 (275)
T PF00780_consen 80 SRSLPTKLPET-K-GVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDP 124 (275)
T ss_pred ccccccccccc-C-CeeEEeeccccccceEEEEEECCEEEEEEEECC
Confidence 11111 1 344444 1123333334445568888887763
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.55 Score=40.30 Aligned_cols=136 Identities=12% Similarity=0.185 Sum_probs=81.0
Q ss_pred eCCCcEEEEEcCCCceeeeecccccceEEEEEE-eC-------CCEEEEecCCCeEEEEEeCCcc--ccccee------e
Q 029743 14 SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-KN-------GRKVVCGSQSGTVLLYSWGYFK--DCSDRF------V 77 (188)
Q Consensus 14 ~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~-~~-------~~~l~~~~~d~~i~~~d~~~~~--~~~~~~------~ 77 (188)
+.|+.+.+|+.+++.....+.+....|..+..- |. =+++..-..--.|.++-+.... .....+ .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 458999999999876666666666666666532 21 1333333333456666553211 111111 1
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEec----ccC---e-e----------------eeecc-cCCCcceeEEEe
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGI----LPN---R-I----------------IQPIA-EHSEYPIESLAL 131 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~----~~~---~-~----------------~~~~~-~~~~~~v~~~~~ 131 (188)
. .+..+.|+ ...+|+.+++|-.+ . +|.+ ..+ + + +..+. .+.+ +|..+..
T Consensus 176 ~-dg~~V~~I~~t~nGRIF~~G~dg-~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d-pI~qi~I 250 (1311)
T KOG1900|consen 176 V-DGVSVNCITYTENGRIFFAGRDG-N--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD-PIRQITI 250 (1311)
T ss_pred c-CCceEEEEEeccCCcEEEeecCC-C--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC-cceeeEe
Confidence 2 34567777 46678777766655 3 3333 111 0 0 12223 3334 8999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCC
Q 029743 132 SHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
......+.+-+..++|.+|++..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 88888889999999999999987
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.16 Score=35.07 Aligned_cols=65 Identities=29% Similarity=0.334 Sum_probs=46.9
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeee-------c-------ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-------E-------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 68 (188)
+..++++|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|....|+.+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3457889999999999999999987653321 1 2445678888888887766654 46778888653
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.2 Score=38.78 Aligned_cols=95 Identities=13% Similarity=0.208 Sum_probs=62.5
Q ss_pred EEEeCCCcEEEEEcCCC-c-eeeeecccc----cceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCce
Q 029743 11 LGTSGDGTLSVCNLRKN-T-VQTRSEFSE----EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (188)
Q Consensus 11 ~~~~~d~~i~i~~~~~~-~-~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v 84 (188)
+.|-.+..|.-||.+-. . .+...++|. ....|.+-.. .-++++|+.+|.|++||- ...+....+.+ -..+|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg-LG~~I 474 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTALPG-LGDAI 474 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhcccc-cCCce
Confidence 34556788888998632 2 232333332 2344444433 357899999999999997 33455556777 78899
Q ss_pred eEE-eecCCCEEEEecCCCeEEEEec
Q 029743 85 DAL-LKLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~v~~~d~ 109 (188)
..+ .+.+|+.+++.+.. .+.+.++
T Consensus 475 ~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 475 KHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred eeEEeeccCcEEEEeccc-EEEEEEE
Confidence 999 79999988776655 4545554
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.36 Score=40.87 Aligned_cols=151 Identities=9% Similarity=-0.012 Sum_probs=83.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCC-------c---------eeeeeccc-ccceEEEEEEeCCCEEEE--ecCCCeEE
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKN-------T---------VQTRSEFS-EEELTSVVLMKNGRKVVC--GSQSGTVL 62 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~-------~---------~~~~~~~~-~~~v~~~~~~~~~~~l~~--~~~d~~i~ 62 (188)
+.++.-.++++++..+.+.++-...- . ....+.-| .-++..+...+|+...++ .+.+-.|.
T Consensus 48 a~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~ 127 (1405)
T KOG3630|consen 48 AISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVY 127 (1405)
T ss_pred hcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCceEE
Confidence 34555556666666676666543321 0 00112211 234556666677665444 33344788
Q ss_pred EEEeCCcccc----ccee------eeccCCceeEE-eecCCC-EEEEecCCCeEEEEecccCe-eeeecccCCCcceeEE
Q 029743 63 LYSWGYFKDC----SDRF------VGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESL 129 (188)
Q Consensus 63 ~~d~~~~~~~----~~~~------~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~ 129 (188)
.||++..... ..-+ .. ......++ |+|.-. ..+....|+.|++..+.... .+..+... ...+++
T Consensus 128 ~fD~~~fs~s~~~~~~pl~~s~ts~e-k~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t--~~~Tav 204 (1405)
T KOG3630|consen 128 SFDLEEFSESRYETTVPLKNSATSFE-KPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVT--NSQTAV 204 (1405)
T ss_pred EEehHhhhhhhhhhccccccccchhc-cccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcc--cceeeE
Confidence 9998642111 1111 11 12223344 666432 34455577778777664322 22222222 268899
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 130 ALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
+|+|.|+.++.|-..|++.-|...-.
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred EeccccceeeEecCCCeEEEeecccc
Confidence 99999999999999999998876543
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.23 Score=37.71 Aligned_cols=75 Identities=9% Similarity=0.173 Sum_probs=52.2
Q ss_pred ceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC-----------------CEE-EEEeC
Q 029743 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-----------------KFL-GSISH 143 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l-~~~~~ 143 (188)
.+.++ .+|.+++.++...-|.|.++|+.++..++.+++-.++.+.-+.....+ .+| +-+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 35566 589999988888889999999999988888877655433322222111 122 34456
Q ss_pred CCcEEEEeCCCccC
Q 029743 144 DSMLKLWDLDDILK 157 (188)
Q Consensus 144 d~~i~iwd~~~~~~ 157 (188)
-|.|.||.++++..
T Consensus 389 Rg~lEvW~~~~g~R 402 (415)
T PF14655_consen 389 RGILEVWSMRQGPR 402 (415)
T ss_pred CCeEEEEecCCCCE
Confidence 78999999998764
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.92 Score=34.82 Aligned_cols=145 Identities=12% Similarity=0.122 Sum_probs=82.8
Q ss_pred ccCeEEEEeCCCcEEEEEcCCC--ceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce---eeec
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKN--TVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR---FVGL 79 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~ 79 (188)
|.+.++.+...|.+.=|-+... ...-.+. ...++|.++.|++|.+.|++--.+.+|.+++.......+.. .+.
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~- 110 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT- 110 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc-
Confidence 4444445555565655655432 2222222 34569999999999999999999999999998432222111 121
Q ss_pred cCCceeEEeecCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEe--CCCcEEEEeCC
Q 029743 80 SPNSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSIS--HDSMLKLWDLD 153 (188)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~ 153 (188)
....+...+..+..-++.....| +.+|-... .+.++..+.++- .|.-..|.++.+.++-++ ..+.+.=+-++
T Consensus 111 k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~-nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 111 KNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNL-NVNWYMYCPETAVILLSTTVLENVLNPFHFR 185 (657)
T ss_pred CcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhccc-CccEEEEccccceEeeeccccccccccEEEe
Confidence 22335555344445666666555 55665443 334555556644 577788888877654333 33444434433
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.67 Score=32.91 Aligned_cols=115 Identities=11% Similarity=-0.065 Sum_probs=71.0
Q ss_pred ceEEEEEEeCCCEEEEecCCC--eEEEEEeCCcccccceeeeccCCceeEEeecCCCEEEEecCCCeEEEEecccCeeee
Q 029743 39 ELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQ 116 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~ 116 (188)
-...+.|..++.++-+.+.-| .|+.+|+.++ +..+...-...-.-..+.--+++.....-.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg-~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETG-KVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTS-SEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCC-cEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEE
Confidence 356788877888888877766 6888888763 4333322101111122212234445555678999999999988888
Q ss_pred ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 117 PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 117 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
++.-..+ -+.++ .+++.|+.......|+++|..+....
T Consensus 125 ~~~y~~E--GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 125 TFPYPGE--GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp EEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred EEecCCc--ceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 8866533 47777 46777887777888999998876543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.1 Score=35.01 Aligned_cols=139 Identities=10% Similarity=-0.088 Sum_probs=65.8
Q ss_pred ccCeEEEEeCC--CcEEEEEcCCCcee--eeecccccceEEEEEEeCCCEEEEecCCC---eEEEEEeCCcccccceeee
Q 029743 6 DAMKLLGTSGD--GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 6 ~~~~l~~~~~d--~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~ 78 (188)
+++..+.|+.+ ..+..|+..+++-. ..++.... ......-+|+..+.|+.++ .+..||..+. .......
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~--~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC--NPAVASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPS 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc--ccEEEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCC
Confidence 45566666653 35677876654322 12221111 1112233677777777553 4667776532 1111111
Q ss_pred ccCCc--eeEEeecCCCEEEEecCCCeEEEEecccCee--eeecccCCCcceeEEEeeCCCCEEEEEeCC-----CcEEE
Q 029743 79 LSPNS--VDALLKLDEDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLGSISHD-----SMLKL 149 (188)
Q Consensus 79 ~~~~~--v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i 149 (188)
-..+ -.++..-+++..+.|+ .+.+||.++.+- +..+..... .. +++. -+++..+.|+.+ ..+.+
T Consensus 394 -m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~-~~-~~~v-~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 394 -TYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRD-NP-ELII-VDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred -CCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcc-cc-EEEE-ECCEEEEECCcCCCcccceEEE
Confidence 1111 1122344566666664 467888876542 222222211 12 2222 266777777754 35667
Q ss_pred EeCCCc
Q 029743 150 WDLDDI 155 (188)
Q Consensus 150 wd~~~~ 155 (188)
||..+.
T Consensus 467 Yd~~~~ 472 (480)
T PHA02790 467 YNNRTY 472 (480)
T ss_pred EECCCC
Confidence 776653
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.08 E-value=1 Score=33.81 Aligned_cols=121 Identities=8% Similarity=-0.056 Sum_probs=57.9
Q ss_pred cEEEEEcCCCceeeeecccccceEEEEEEeCC-CEEEEecC---CC-eEEEEEeCCcccccceeeeccCCceeEE---ee
Q 029743 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQ---SG-TVLLYSWGYFKDCSDRFVGLSPNSVDAL---LK 89 (188)
Q Consensus 18 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~---d~-~i~~~d~~~~~~~~~~~~~~~~~~v~~~---~~ 89 (188)
.|...|+.+|+....+. -...+..+.|+|.. ..|+.|.+ +. .-+||-++..+...+.+.. +.....+- |.
T Consensus 169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-RMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-
T ss_pred eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-CCCCccccccccc
Confidence 35556777776544443 45667889999955 44444433 22 2467877766666555554 43322222 58
Q ss_pred cCCCEEEEec-----CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 90 LDEDRVITGS-----ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 90 ~~~~~l~~~~-----~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
|+|..+..-+ .+..|.-+|+.+++........ ....+--++|+++++.=+.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCC
Confidence 9998765432 2335667788777654333322 3445566788887763333
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.6 Score=35.61 Aligned_cols=142 Identities=11% Similarity=0.035 Sum_probs=84.7
Q ss_pred cCeEEEEeCCCcEEEEEcCCCce------eeeec----------------ccccceEEEEEEe--CCCEEEEecCCCeEE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTV------QTRSE----------------FSEEELTSVVLMK--NGRKVVCGSQSGTVL 62 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~------~~~~~----------------~~~~~v~~~~~~~--~~~~l~~~~~d~~i~ 62 (188)
.++|+++. .+.|+||++..-.. ...+. .-+..|+.|.... ....|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666654 58999999764211 00000 0112344444433 346788999999999
Q ss_pred EEEeCCcc----------c---------ccceeeeccCCceeEE-ee--cCCCEEEEecCCCeEEEEecccCee----ee
Q 029743 63 LYSWGYFK----------D---------CSDRFVGLSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRI----IQ 116 (188)
Q Consensus 63 ~~d~~~~~----------~---------~~~~~~~~~~~~v~~~-~~--~~~~~l~~~~~d~~v~~~d~~~~~~----~~ 116 (188)
+|..+.-- . +...+. -...++.+ ++ ...+++|++++...|.||-...... ..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 99763100 0 111111 33456777 55 6777888888888888887654211 11
Q ss_pred ecccCCCcceeEEEeeCCC---C---EEEEEeCCCcEEEEeCC
Q 029743 117 PIAEHSEYPIESLALSHDR---K---FLGSISHDSMLKLWDLD 153 (188)
Q Consensus 117 ~~~~~~~~~v~~~~~~~~~---~---~l~~~~~d~~i~iwd~~ 153 (188)
... + ...|-+++|-++. . .|++++-.|.+.+|++.
T Consensus 206 s~~-~-~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 206 SHQ-H-SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccc-c-ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 111 2 2268899997743 2 67788889999998883
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.17 Score=24.44 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=24.0
Q ss_pred cccCeEEEEeC-CCcEEEEEcCCCceeeeecc
Q 029743 5 ADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEF 35 (188)
Q Consensus 5 ~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~ 35 (188)
|++++|+++.. ++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 67887777654 78999999988887776663
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.3 Score=33.38 Aligned_cols=145 Identities=13% Similarity=0.108 Sum_probs=83.9
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEE----eCCCE--EEEec-CC---CeEEEEEeCCcccccc
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM----KNGRK--VVCGS-QS---GTVLLYSWGYFKDCSD 74 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---~~i~~~d~~~~~~~~~ 74 (188)
|...+++.....+-+.+||+... .++.+. .+++..+... -+|+. |+.++ .+ ..|++|.++.....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 45667777788899999998754 444554 2334443322 24443 33333 32 4799998863222333
Q ss_pred eeee------ccCCceeEE--e-ec-CCC-EEEEecCCCeEEEEecc---cC----eeeeecccCCCcceeEEEeeCCCC
Q 029743 75 RFVG------LSPNSVDAL--L-KL-DED-RVITGSENGLISLVGIL---PN----RIIQPIAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 75 ~~~~------~~~~~v~~~--~-~~-~~~-~l~~~~~d~~v~~~d~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~ 136 (188)
.+.. ..-..++.+ + ++ +|. +++....+|.+..|-+. .+ +.++.|...+ .+..+.......
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g 220 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETG 220 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccC
Confidence 3221 011223444 3 44 455 55667788998888775 22 4577777653 688999998888
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 029743 137 FLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~ 154 (188)
+|..+-++.-|.-|+.+.
T Consensus 221 ~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp EEEEEETTTEEEEEESSC
T ss_pred CEEEecCccEEEEEecCC
Confidence 999999888888888764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.4 Score=35.53 Aligned_cols=93 Identities=11% Similarity=0.146 Sum_probs=59.1
Q ss_pred eCCCcEEEEEcCCCceeeeec-ccccceEEEEEEe--CCCEEEEecCCCeEEEEEeC-----Ccc---ccccee--eecc
Q 029743 14 SGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWG-----YFK---DCSDRF--VGLS 80 (188)
Q Consensus 14 ~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~-----~~~---~~~~~~--~~~~ 80 (188)
....++.|||...+.....-. ...+.|..+.|.. +++.+.+.+..+.|.+|.-. ... ..++.+ .. +
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~-~ 126 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISS-H 126 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeec-C
Confidence 344678999998876443322 3467899999964 78888888888899888541 111 122222 22 2
Q ss_pred C-CceeEE-eecCCCEEEEecCCCeEEEEec
Q 029743 81 P-NSVDAL-LKLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 81 ~-~~v~~~-~~~~~~~l~~~~~d~~v~~~d~ 109 (188)
+ .+|... |.++|.+++.++ +.+.|+|-
T Consensus 127 T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 127 TPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 2 456666 778887665544 35777763
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.65 Score=38.06 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=49.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC----------Cce--e-eee--------cccccceEEEEEEeC---CCEEEEec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK----------NTV--Q-TRS--------EFSEEELTSVVLMKN---GRKVVCGS 56 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~----------~~~--~-~~~--------~~~~~~v~~~~~~~~---~~~l~~~~ 56 (188)
+.+||+|++|+..+..+ |.|..+.. |.. . +.+ ..+...|..+.|+|. +.+|+.-.
T Consensus 90 i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLt 168 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLT 168 (717)
T ss_pred EEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEe
Confidence 35789999999988855 44444321 111 1 111 123457899999995 58899999
Q ss_pred CCCeEEEEEeCCcccccce
Q 029743 57 QSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 57 ~d~~i~~~d~~~~~~~~~~ 75 (188)
.|+.+++||+.....+.+.
T Consensus 169 sdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 169 SDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred cCCEEEEEecCCCCCCeEE
Confidence 9999999999754444333
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.57 E-value=2.4 Score=35.65 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=77.8
Q ss_pred EEEEEcCCCceeeeecc-cccc---eEEEEEEeC-CCEEEEecC----------CCeEEEEEeCCcccccceeee-ccCC
Q 029743 19 LSVCNLRKNTVQTRSEF-SEEE---LTSVVLMKN-GRKVVCGSQ----------SGTVLLYSWGYFKDCSDRFVG-LSPN 82 (188)
Q Consensus 19 i~i~~~~~~~~~~~~~~-~~~~---v~~~~~~~~-~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~-~~~~ 82 (188)
++++|..+-+.+...+. .... +.++.|..| +.++++|.. .|.|.+|.+.. ...++.... .-.+
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVKG 830 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeecc
Confidence 45566555443332221 1122 344447766 566666642 57899998875 344444433 0234
Q ss_pred ceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 83 SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.+.++.--+|+++|.-+ ..|++|+..+++.++.-..+.. ++..+...-.+..++.|..-+.+.+-..+
T Consensus 831 av~aL~~fngkllA~In--~~vrLye~t~~~eLr~e~~~~~-~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 831 AVYALVEFNGKLLAGIN--QSVRLYEWTTERELRIECNISN-PIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred ceeehhhhCCeEEEecC--cEEEEEEccccceehhhhcccC-CeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 55555445777776544 4799999887766655555544 77888888888888888766665554433
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.3 Score=31.56 Aligned_cols=127 Identities=12% Similarity=0.043 Sum_probs=73.5
Q ss_pred EEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec-cCCceeEE--e
Q 029743 12 GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-SPNSVDAL--L 88 (188)
Q Consensus 12 ~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~v~~~--~ 88 (188)
..-.++...+||..+-+.+..+. ....=+.++ .+++.|+.+.....++.+|..+. ...+.+.-. ...++..+ .
T Consensus 105 LTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp EESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEE
T ss_pred EEecCCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeE
Confidence 33457888999998888777775 334556666 57888888777778999987653 333333220 33444444 1
Q ss_pred -ecCCCEEEEecCCCeEEEEecccCeeeeecc-----------cC---CCcceeEEEeeCCCCEEEEEe
Q 029743 89 -KLDEDRVITGSENGLISLVGILPNRIIQPIA-----------EH---SEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 89 -~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-----------~~---~~~~v~~~~~~~~~~~l~~~~ 142 (188)
--+|...+=.-....|...|..+|+....+. .. ...-.+.+++.|..+.|...+
T Consensus 181 E~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 181 EYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 2366655555566678888888887654331 00 012578999998776665444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.28 E-value=2.5 Score=35.14 Aligned_cols=109 Identities=8% Similarity=0.064 Sum_probs=66.0
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccc--------eEEEEEE----------------eCCCEEEEecCCCeEE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE--------LTSVVLM----------------KNGRKVVCGSQSGTVL 62 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~~~~~d~~i~ 62 (188)
+..|+.++.++.|+-.|.++|+.+..+...... ...+.+- ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567778888899999999999888776522110 1222221 1235788888899998
Q ss_pred EEEeCCcccccceeeeccCCce-------------eEE-eec--CCCEEEEecC----------CCeEEEEecccCeeee
Q 029743 63 LYSWGYFKDCSDRFVGLSPNSV-------------DAL-LKL--DEDRVITGSE----------NGLISLVGILPNRIIQ 116 (188)
Q Consensus 63 ~~d~~~~~~~~~~~~~~~~~~v-------------~~~-~~~--~~~~l~~~~~----------d~~v~~~d~~~~~~~~ 116 (188)
-.|.+++ +.+..+.. .+.+ ... ..| .+..+++|+. +|.|+-+|.++|+.+.
T Consensus 274 ALDA~TG-k~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTG-KLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCC-CEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 8888774 44433211 1100 011 122 2445555532 5789999999988765
Q ss_pred ec
Q 029743 117 PI 118 (188)
Q Consensus 117 ~~ 118 (188)
.+
T Consensus 351 ~~ 352 (764)
T TIGR03074 351 AW 352 (764)
T ss_pred EE
Confidence 54
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=2.3 Score=34.09 Aligned_cols=142 Identities=14% Similarity=0.102 Sum_probs=75.9
Q ss_pred cCeEEEEeCC------CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC-C-----eEEEEEeCCcccc
Q 029743 7 AMKLLGTSGD------GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-G-----TVLLYSWGYFKDC 72 (188)
Q Consensus 7 ~~~l~~~~~d------~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-----~i~~~d~~~~~~~ 72 (188)
+.+++.|+.. ..+..||..++.-.. .++ ......+++.. ++...++|+.+ + ++..||.....
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-- 360 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-- 360 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc--
Confidence 4566777766 356788887763322 222 22223344433 56777888888 3 57777776422
Q ss_pred cceeeeccCCce--eEEeecCCCEEEEecCCCe-----EEEEecccCee--eeecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 73 SDRFVGLSPNSV--DALLKLDEDRVITGSENGL-----ISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 73 ~~~~~~~~~~~v--~~~~~~~~~~l~~~~~d~~-----v~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
...+.. -..+- ..+..-+|...++|+.||. |..||..+.+- +..+..... ......+ +|...++|+.
T Consensus 361 W~~~a~-M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~-~~gv~~~--~g~iYi~GG~ 436 (571)
T KOG4441|consen 361 WTPVAP-MNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS-GHGVAVL--GGKLYIIGGG 436 (571)
T ss_pred eeccCC-ccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCccee-eeEEEEE--CCEEEEEcCc
Confidence 222111 11111 1123457888888888864 77788776542 222221111 1112222 6777777774
Q ss_pred CC------cEEEEeCCCcc
Q 029743 144 DS------MLKLWDLDDIL 156 (188)
Q Consensus 144 d~------~i~iwd~~~~~ 156 (188)
++ .+..||..+..
T Consensus 437 ~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CCCccccceEEEEcCCCCc
Confidence 43 57778877654
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.067 Score=43.87 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=82.9
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEE-----------EEeCCCEEEEecCCCeEEEEEeCCc----
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV-----------LMKNGRKVVCGSQSGTVLLYSWGYF---- 69 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~d~~i~~~d~~~~---- 69 (188)
++.-++..+-.++++++.++..... ..+.+|...+..++ .+|||+.++.++.||.++.|.+--.
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~ 271 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIV 271 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecccc
Confidence 3556677777788998887654322 33445655544332 6899999999999998888876322
Q ss_pred ccccceeeeccC-CceeEE-eecC-------C--CEEEEecC-CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE
Q 029743 70 KDCSDRFVGLSP-NSVDAL-LKLD-------E--DRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 70 ~~~~~~~~~~~~-~~v~~~-~~~~-------~--~~l~~~~~-d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 137 (188)
.+++...+. |. .+..|. |+.+ + .++++++. +..+++|.....+|+..+. .+ .|..+. -+++..
T Consensus 272 ~rclhewkp-hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~--~d-~v~iV~-p~~~~v 346 (1283)
T KOG1916|consen 272 HRCLHEWKP-HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL--ID-GVQIVG-PHDGEV 346 (1283)
T ss_pred HhhhhccCC-CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc--cc-ceEeec-CCCccc
Confidence 245555566 65 333333 4321 1 23445543 4568899877777662211 12 233333 223321
Q ss_pred ------------EEEEeCCCcEEEEeCCC
Q 029743 138 ------------LGSISHDSMLKLWDLDD 154 (188)
Q Consensus 138 ------------l~~~~~d~~i~iwd~~~ 154 (188)
+++.+.++.|.+|.-+.
T Consensus 347 ~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 347 TDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 23445678888885443
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.98 E-value=1 Score=35.61 Aligned_cols=101 Identities=9% Similarity=-0.042 Sum_probs=59.8
Q ss_pred CeEEEEeCCCcEEEEEcCC-----Cceeeeecc-c--cc--ceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 8 MKLLGTSGDGTLSVCNLRK-----NTVQTRSEF-S--EE--ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~-----~~~~~~~~~-~--~~--~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
.+||. -....|.||.+.. ++.+..-.. . .- -...+.|+|....|++-.....-.+++++.....++.-.
T Consensus 74 aLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi 152 (671)
T PF15390_consen 74 ALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI 152 (671)
T ss_pred ceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec
Confidence 34444 4557899998852 222221111 1 11 134678999988888766655555667764433333322
Q ss_pred eccCCceeEE-eecCCCEEEEecCCC-eEEEEecc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENG-LISLVGIL 110 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~-~v~~~d~~ 110 (188)
. ..+.|.|. |.+||++|+++-... .-++||-.
T Consensus 153 ~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 153 K-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred c-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 3 56778888 889999887665442 35688853
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.38 Score=23.18 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=27.7
Q ss_pred cCCCEEEEec-CCCeEEEEecccCeeeeecccCCCcceeEEEe
Q 029743 90 LDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (188)
Q Consensus 90 ~~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 131 (188)
|++++|+++. .++.|.++|..+++.+..+... . ....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~-~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-G-YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-C-CCceEEe
Confidence 5677766655 5789999999888877776654 2 2445555
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.9 Score=33.19 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=83.2
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeecc--cc--cceEEEEEEeCCCEEEEec------CCCeEEEEEeCCcccccceee
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEF--SE--EELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~--~~v~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~ 77 (188)
..++.++.++.|.-+|.++|+.+..... +. ..+.+.-.--++ .++++. .++.|.-+|..++ +.+-.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG-~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTG-KLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCC-ceeEecc
Confidence 4677788899999999999998776542 11 111111111134 444433 2578888887653 3322211
Q ss_pred ec------------------------------cCCceeEE--eecCCCEEEEecCC-----C-----------eEEEEec
Q 029743 78 GL------------------------------SPNSVDAL--LKLDEDRVITGSEN-----G-----------LISLVGI 109 (188)
Q Consensus 78 ~~------------------------------~~~~v~~~--~~~~~~~l~~~~~d-----~-----------~v~~~d~ 109 (188)
.. ....+... +.|...+++.+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 10 01122222 34545555555421 2 5777888
Q ss_pred ccCeeeeecccCCC--------cceeEEEeeCCCC---EEEEEeCCCcEEEEeCCCccC
Q 029743 110 LPNRIIQPIAEHSE--------YPIESLALSHDRK---FLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 110 ~~~~~~~~~~~~~~--------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~ 157 (188)
++|+....++.... .+..-+.+..+|+ .++.+..+|.+++.|-.+++.
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 89988766654221 0111122324665 677888999999999988765
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.58 Score=37.10 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=41.8
Q ss_pred eCCCEEEEecCCCeEEEEEeCC---cccccce-----------eee---cc-------CCceeEE-eec----CCCEEEE
Q 029743 47 KNGRKVVCGSQSGTVLLYSWGY---FKDCSDR-----------FVG---LS-------PNSVDAL-LKL----DEDRVIT 97 (188)
Q Consensus 47 ~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~-----------~~~---~~-------~~~v~~~-~~~----~~~~l~~ 97 (188)
++...++.+..||.+....... .+..... +.+ .. ...+..+ .++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677888888899888887753 1111110 100 00 1122233 333 6779999
Q ss_pred ecCCCeEEEEecccCeeeee
Q 029743 98 GSENGLISLVGILPNRIIQP 117 (188)
Q Consensus 98 ~~~d~~v~~~d~~~~~~~~~ 117 (188)
.+.|+.+++||+.++.++.+
T Consensus 236 l~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp EETTSEEEEEETTTTCEEEE
T ss_pred EeCCCeEEEEECCCCeEEEE
Confidence 99999999999999988554
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.2 Score=28.19 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=63.8
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCC--------ceeeeecccccceEEEEEEe-----CCCEEEEecCCCeEEEEEeCCc
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKN--------TVQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~ 69 (188)
|......|++++.-++|.|.+.... ..+..+. -...|++++-.+ ....|+.|+.. .+..||+...
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N 83 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENN 83 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccC
Confidence 4445556888899999999987632 2233333 456788887655 23567777654 7999999753
Q ss_pred ccccceeeeccCCceeEE-e---ec-CCCEEEEecCCCeEEEEecccCeeeee
Q 029743 70 KDCSDRFVGLSPNSVDAL-L---KL-DEDRVITGSENGLISLVGILPNRIIQP 117 (188)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~---~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~ 117 (188)
.... .+. -...+.++ + .. +..++++ +.+..|.=||....+...+
T Consensus 84 ~d~F--yke-~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 84 SDLF--YKE-VPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred chhh--hhh-CccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEE
Confidence 3222 222 33456666 3 12 3344444 4445666676554444443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.73 Score=32.15 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=38.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK 47 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 47 (188)
++.-+|++.++.-..++|...|..+|+.+..++-....+++++|--
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 4445677888888889999999999999999888888999999964
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.87 Score=30.20 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=22.7
Q ss_pred ceEEEEEEeCC------CEEEEecCCCeEEEEEeC
Q 029743 39 ELTSVVLMKNG------RKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 39 ~v~~~~~~~~~------~~l~~~~~d~~i~~~d~~ 67 (188)
.+.+++|||.| ..|++...++.+.+|.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 67888899854 367888888888888754
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.88 E-value=2 Score=35.07 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=65.2
Q ss_pred ccCeEEEEeCCCcEEEEEcCC-------C----c---------eeeeecccccceEEEEEE--eCCCEEEEecCCCeEEE
Q 029743 6 DAMKLLGTSGDGTLSVCNLRK-------N----T---------VQTRSEFSEEELTSVVLM--KNGRKVVCGSQSGTVLL 63 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~ 63 (188)
+...|+.+..||.|.+|..+. . . +...+ .-...+++++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 345788889999999997631 0 0 01111 134568999998 77788999988888888
Q ss_pred EEeCCcccc--cceeeeccCCceeEE-ee-----cCCC-EEEEecCCCeEEEEec
Q 029743 64 YSWGYFKDC--SDRFVGLSPNSVDAL-LK-----LDED-RVITGSENGLISLVGI 109 (188)
Q Consensus 64 ~d~~~~~~~--~~~~~~~~~~~v~~~-~~-----~~~~-~l~~~~~d~~v~~~d~ 109 (188)
|-+...... ...-.. +...|-++ |- +.|. .+++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~-~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQ-HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccc-cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 876542111 111112 34556666 52 2333 7778889999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=3.2 Score=30.82 Aligned_cols=144 Identities=11% Similarity=0.003 Sum_probs=71.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeee-cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee--
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-- 78 (188)
.+.|++.+++++. .|.+..-.-..++.-... ......+.++.+.++++.++++ ..|.+.+-.-+ .+........
T Consensus 179 ~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d-~G~sW~~~~~~~ 255 (334)
T PRK13684 179 RRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD-DLESWSKPIIPE 255 (334)
T ss_pred EECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC-CCCccccccCCc
Confidence 3456665555543 355443211222211111 2334578899999988876665 45665432222 2222221111
Q ss_pred -ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC--CcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 79 -LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 79 -~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.....+..+ +.+++..+++ +.+|.+. .....++.-....... ....+.+.|..+++.++ .+..|.|..|+
T Consensus 256 ~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 256 ITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred cccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 011235556 5777765554 4566553 3444444333322111 12477888887666655 55678887765
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.59 Score=22.19 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=18.9
Q ss_pred cccceEEEEEEeCCCEEEEecC-C--CeEEEE
Q 029743 36 SEEELTSVVLMKNGRKVVCGSQ-S--GTVLLY 64 (188)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~~ 64 (188)
....-....|+|||+.|+.++. + |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4456778999999988876544 3 454444
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=92.49 E-value=5.6 Score=33.19 Aligned_cols=152 Identities=10% Similarity=-0.025 Sum_probs=84.6
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccce-------------EEEEEEe--CCCEEEEecC----------CCe
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEEL-------------TSVVLMK--NGRKVVCGSQ----------SGT 60 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~ 60 (188)
.++.++.++.|+.|.-.|.++|+....+.. .+.+ ..+.-.| .+..+++++. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 345788888999999999999988765531 1111 0111112 2345555532 578
Q ss_pred EEEEEeCCcccccceeeec----------------cCCceeEE--eecCCCEEEEec------------------CCCeE
Q 029743 61 VLLYSWGYFKDCSDRFVGL----------------SPNSVDAL--LKLDEDRVITGS------------------ENGLI 104 (188)
Q Consensus 61 i~~~d~~~~~~~~~~~~~~----------------~~~~v~~~--~~~~~~~l~~~~------------------~d~~v 104 (188)
|+-+|+.++ +.+-.+..- ....+... +.++..+++.+. ..+.|
T Consensus 338 I~A~Da~TG-kl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 338 IRAFDVNTG-ALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred EEEEECCCC-cEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceE
Confidence 999998763 443333210 01111111 234333333321 12446
Q ss_pred EEEecccCeeeeeccc-CCC-------cceeEEEeeC-CCC---EEEEEeCCCcEEEEeCCCccCCC
Q 029743 105 SLVGILPNRIIQPIAE-HSE-------YPIESLALSH-DRK---FLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 105 ~~~d~~~~~~~~~~~~-~~~-------~~v~~~~~~~-~~~---~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
.-.|+++|+....++. |.+ .+..-+.+.. +|+ .++.++.+|.++++|-++++..-
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 6778888888776654 221 0111122322 553 67888899999999999886543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.7 Score=36.37 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=43.1
Q ss_pred CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEE-ecCCC-----eEEEEEeCCcccccceee
Q 029743 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG-----TVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 15 ~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~i~~~d~~~~~~~~~~~~ 77 (188)
..+.|.+-|.........-..+..++.+..|||||+.|+. .+..+ .|.+-++.+.+..+..+.
T Consensus 327 ~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 327 VTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred CCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee
Confidence 3358888887765554330346788999999999999987 33333 588888876555444444
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.07 E-value=3.4 Score=29.75 Aligned_cols=150 Identities=11% Similarity=-0.025 Sum_probs=90.2
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee--ec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV--GL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~ 79 (188)
+-+|||..-+++...+.|--.|..+|+....-.+.......|...|+|..-++-+.. -|.-.|-++ -.+..+. ..
T Consensus 68 apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt--~evt~f~lp~~ 144 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT--LEVTRFPLPLE 144 (353)
T ss_pred ccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcc--cceEEeecccc
Confidence 445677777777777777777888887766555566667788888888766654333 344444332 1122221 10
Q ss_pred c-CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 80 S-PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 80 ~-~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
| ....... |.+.|.+.+++...-.= -.|.. ...+..+....+...+.|+..|+|..-++.-.++.|-..|.....
T Consensus 145 ~a~~nlet~vfD~~G~lWFt~q~G~yG-rLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~ 221 (353)
T COG4257 145 HADANLETAVFDPWGNLWFTGQIGAYG-RLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGH 221 (353)
T ss_pred cCCCcccceeeCCCccEEEeeccccce-ecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCC
Confidence 1 2233344 88999998888742111 11211 223445555544467889999999887776677777777776654
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.6 Score=34.61 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=40.0
Q ss_pred ccCeEEEEeCCCcEEEEEcCC----Cceee-----------eecc-----------cccceEEEEEEe----CCCEEEEe
Q 029743 6 DAMKLLGTSGDGTLSVCNLRK----NTVQT-----------RSEF-----------SEEELTSVVLMK----NGRKVVCG 55 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~----~~~~~-----------~~~~-----------~~~~v~~~~~~~----~~~~l~~~ 55 (188)
+...++.+..||.+....... +.... .+.+ ....+..++.++ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566788888888887776653 11111 0000 123345566665 67899999
Q ss_pred cCCCeEEEEEeCCccccc
Q 029743 56 SQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 56 ~~d~~i~~~d~~~~~~~~ 73 (188)
+.|+.+++||+.+ +.++
T Consensus 237 ~~D~~LRiW~l~t-~~~~ 253 (547)
T PF11715_consen 237 SRDHTLRIWSLET-GQCL 253 (547)
T ss_dssp ETTSEEEEEETTT-TCEE
T ss_pred eCCCeEEEEECCC-CeEE
Confidence 9999999999986 4553
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=91.70 E-value=4.2 Score=30.11 Aligned_cols=105 Identities=11% Similarity=0.143 Sum_probs=51.3
Q ss_pred ceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc-ccccee----eeccCCceeEE-eecC---CCEEEEecC-C-------
Q 029743 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF----VGLSPNSVDAL-LKLD---EDRVITGSE-N------- 101 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~----~~~~~~~v~~~-~~~~---~~~l~~~~~-d------- 101 (188)
..++|+|.|+|+++++ ...|.|++++.+... ..+..+ .. .......+ ++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~-~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFAD-GERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTS-TTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceeccccccccc-ccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4679999999887765 458999999932211 111111 11 23345556 6773 334433332 1
Q ss_pred -CeEEEEecccC-------e-eeeeccc--CCCcceeEEEeeCCCCEEEEEeCCC
Q 029743 102 -GLISLVGILPN-------R-IIQPIAE--HSEYPIESLALSHDRKFLGSISHDS 145 (188)
Q Consensus 102 -~~v~~~d~~~~-------~-~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~ 145 (188)
..|.-|....+ + .+..+.. ........|+|.|||.+.++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 13433443322 1 1111122 1112456799999997666665443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=91.66 E-value=2.7 Score=27.84 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=24.5
Q ss_pred ceeEEEeeCCC------CEEEEEeCCCcEEEEeCCC
Q 029743 125 PIESLALSHDR------KFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 125 ~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~ 154 (188)
.+..++|+|.| -.|++.+.++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999943 3678888999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=91.56 E-value=5.6 Score=31.20 Aligned_cols=135 Identities=12% Similarity=0.026 Sum_probs=61.4
Q ss_pred CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc---eeEE-eecC
Q 029743 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS---VDAL-LKLD 91 (188)
Q Consensus 16 d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~---v~~~-~~~~ 91 (188)
.....++|. .|..+..+.........+...++|.+++... ..+..+|+- ++.+....- .... -..+ ..|+
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l-~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDL-PGGYYDFHHDIDELPN 200 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE---TTEE-B-S-EEE-TT
T ss_pred CceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--CCEEEeeec-CCcccccccccEECCC
Confidence 345556663 3555555442222221266678888887665 677788774 454444432 2221 2334 4788
Q ss_pred CCEEEEecC-------------CCeEEEEecccCeeeeecc---------c----------------CC-CcceeEEEee
Q 029743 92 EDRVITGSE-------------NGLISLVGILPNRIIQPIA---------E----------------HS-EYPIESLALS 132 (188)
Q Consensus 92 ~~~l~~~~~-------------d~~v~~~d~~~~~~~~~~~---------~----------------~~-~~~v~~~~~~ 132 (188)
|++|+.+.. ...|..+| .+|+.+..+. . .. -..++++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 888887761 11233444 4444332210 0 00 0258899999
Q ss_pred C-CCCEEEEEeCCCcEEEEeCCCccC
Q 029743 133 H-DRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 133 ~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+ ++.+|+++-.-..|...|.++...
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcE
Confidence 9 555556555556888888666543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.93 Score=35.32 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=48.5
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeC
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 67 (188)
...++|+|+..|.|++||--..+....+++....|..+..+.+|+++++.+.. .+.+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 34689999999999999966555556677888899999999999988776654 56677764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=91.40 E-value=4.6 Score=29.93 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=30.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCce---eeee----cccccceEEEEEEeC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRS----EFSEEELTSVVLMKN 48 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~---~~~~----~~~~~~v~~~~~~~~ 48 (188)
|+|.|||+++++ ...|.|++++ ..+.. +..+ .........++++|+
T Consensus 7 ~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 7 MAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred EEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 579999877665 6689999999 44433 2222 123456899999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=91.36 E-value=7.7 Score=32.45 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=67.1
Q ss_pred cceEEEEEEe-CCCEEEEecCCCeEEEEEeCCc-c---cccceeeeccCCc----------eeEE-eecCCCEEEEecCC
Q 029743 38 EELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF-K---DCSDRFVGLSPNS----------VDAL-LKLDEDRVITGSEN 101 (188)
Q Consensus 38 ~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~-~---~~~~~~~~~~~~~----------v~~~-~~~~~~~l~~~~~d 101 (188)
.+...++|+| +.+.||+....|...+|++... + ..+..... ..+. -..+ |.++...|++++..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~-~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN-ISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccC-CCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence 4677899999 5578999999999999999211 1 11111111 1111 1233 66666666666654
Q ss_pred CeEEEEecccCeeee-ecccCCCcceeEEEeeCC--CCEEEEEeCCCcEEEEeCCC
Q 029743 102 GLISLVGILPNRIIQ-PIAEHSEYPIESLALSHD--RKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 102 ~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~ 154 (188)
.+.++|+.+..... .........|..+.-++. +..++.. ...|...++..
T Consensus 225 -~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 -KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred -ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 47789998766533 222222236888888876 2333322 35677777776
|
These proteins are found in fungi. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.72 Score=20.82 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.2
Q ss_pred eEEEEeCCCcEEEEEcCCCceeee
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTR 32 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~ 32 (188)
.++.++.++.++.+|..+|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 677888899999999998887654
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.78 E-value=5 Score=29.23 Aligned_cols=142 Identities=10% Similarity=0.088 Sum_probs=84.0
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecc--cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce--eeeccCC
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--FVGLSPN 82 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~ 82 (188)
+++.+.+..+.-++|.|+.+......+.. ..+--.+ |.-.|+++..+..+.-+.+.|+.....+... ... ...
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~lagrya~-~~~ 172 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PGG 172 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceeeeeecc-CCC
Confidence 56777777888899999987543322221 1122333 3446889998887777889998764333222 121 222
Q ss_pred ceeEEeecCCCEEEEecCCCeEEEEecccCe---eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 83 SVDALLKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
....+ .-.|++-..+..++-+.+.|+.... .+...... . .+.++..+++..+++.. +..+.+-|..+..
T Consensus 173 d~~~v-~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g-~-g~~sv~vsdnr~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 173 DTHDV-AISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG-P-GTYSVSVSDNRAYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred CceeE-EEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecC-C-ceEEEEecCCeeEEEEc--ccceEEEecCCCC
Confidence 22222 3357788888888899999987533 22222222 2 47888888776665543 3345666666554
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=90.63 E-value=6.4 Score=30.21 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=27.6
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeCC
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 68 (188)
.+++..++.||++++++.-..+|.+.+...+.
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 35799999999999999999999988887654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.38 E-value=4.4 Score=27.93 Aligned_cols=105 Identities=16% Similarity=0.037 Sum_probs=59.3
Q ss_pred CEEEEecCCCeEEEEEeCCc-ccccceeeeccCCceeEE-eecCCCEEEEecCC---C---eEEEE---ecc--cCeeee
Q 029743 50 RKVVCGSQSGTVLLYSWGYF-KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN---G---LISLV---GIL--PNRIIQ 116 (188)
Q Consensus 50 ~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~---~v~~~---d~~--~~~~~~ 116 (188)
+.|+.+.....|.+|++... .+.+..+. .-+.+..+ ++..|+|+++-=.+ . .+++| ... ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 45555566778999999732 23344444 23667777 78899999976432 2 45554 221 111111
Q ss_pred -eccc--------------------CCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 117 -PIAE--------------------HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 117 -~~~~--------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.+.+ +...++.+++..|-..-|+.|+ ++.+.+|.+.....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 1111 1112567788887444444444 67889998876544
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=90.20 E-value=7 Score=30.00 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=25.2
Q ss_pred ceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 125 PIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 125 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.|..++..+..+.|++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388999999889999999999999999975
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=7.2 Score=29.81 Aligned_cols=109 Identities=10% Similarity=0.019 Sum_probs=57.5
Q ss_pred cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc-----ccceeee-ccCCceeEE-eecCCCEEEEecCCCeEEEEe
Q 029743 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-----CSDRFVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVG 108 (188)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-----~~~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d 108 (188)
....+.++.+.+++..++++ ..|.+.. .... +. ....... .....+..+ +.+++..+++ +..|.+..-
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~-G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s- 353 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLYV-SKGT-GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS- 353 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEEE-ecCC-CCcccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-
Confidence 34568899999888877766 4455433 2222 22 1121111 011236666 5666665544 556655444
Q ss_pred cccCeeeeecc--cCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 109 ILPNRIIQPIA--EHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 109 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
...|+.-.... ..-....+.+.|.++++-++++ .+|.|.-|
T Consensus 354 ~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 354 TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 33444322222 1111268899998776665544 67776654
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=89.92 E-value=10 Score=31.78 Aligned_cols=108 Identities=11% Similarity=0.108 Sum_probs=61.2
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCC-----ceeeeecccc----------cceEEEEEEeCCCEEEEecCCCeEEEE
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-----TVQTRSEFSE----------EELTSVVLMKNGRKVVCGSQSGTVLLY 64 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~-----~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~d~~i~~~ 64 (188)
++|+| +.+.||+....|...||++... ........+. ..-..+.|.++-+.|+.++.. .+.++
T Consensus 151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~ 229 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLI 229 (765)
T ss_pred EEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEE
Confidence 57888 4567999999999999999221 1111111111 223478898888888887765 68899
Q ss_pred EeCCcccccceeeeccCCceeEE-eecC--CCEEEEecCCCeEEEEeccc
Q 029743 65 SWGYFKDCSDRFVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILP 111 (188)
Q Consensus 65 d~~~~~~~~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~v~~~d~~~ 111 (188)
|++................+..+ -+|. +..++..+ ..|...++..
T Consensus 230 d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 230 DFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred ECCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 99753221112221134556666 3554 22332222 3465566654
|
These proteins are found in fungi. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.90 E-value=11 Score=32.02 Aligned_cols=141 Identities=15% Similarity=0.125 Sum_probs=82.4
Q ss_pred cCeEEEEeC----------CCcEEEEEcCCCceeeeecc--cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccc
Q 029743 7 AMKLLGTSG----------DGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 7 ~~~l~~~~~----------d~~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 74 (188)
+.+++.|.. .|.|.|+....++.++.+.. -.+.+.++.. -+|+++|.- +..|++|++.. ++.++
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~-~~eLr 862 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTT-ERELR 862 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccc-cceeh
Confidence 556666642 46777877766433333322 1234444432 156666554 45899999976 34555
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecc--cCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL--PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.-.. +..++..+ ..-.|..+++|..=+.+.+...+ .|.....-+.-...+.+.+.+-.+. .++.+..+|.+.+-.
T Consensus 863 ~e~~-~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d-~ylgae~~gNlf~v~ 940 (1096)
T KOG1897|consen 863 IECN-ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD-TYLGAENSGNLFTVR 940 (1096)
T ss_pred hhhc-ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc-eEEeecccccEEEEE
Confidence 5445 67778888 57789999999987777665444 3333322221112267777776554 444555677777665
Q ss_pred CC
Q 029743 152 LD 153 (188)
Q Consensus 152 ~~ 153 (188)
..
T Consensus 941 ~d 942 (1096)
T KOG1897|consen 941 KD 942 (1096)
T ss_pred ec
Confidence 44
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.87 E-value=8.2 Score=30.29 Aligned_cols=138 Identities=9% Similarity=-0.093 Sum_probs=64.8
Q ss_pred cCeEEEEeCC-----CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC--CeEEEEEeCCcccccceee
Q 029743 7 AMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 7 ~~~l~~~~~d-----~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~ 77 (188)
+..+++|+.+ ..+..||..++.-.. .++...... ++ ..-++...+.|+.+ ..+..||.... ....+.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~n--~W~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGDA--AWVNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCCC--eEEECC
Confidence 4455666643 246678877654322 222111111 22 22367777777754 35777876431 111111
Q ss_pred eccCCcee--EEeecCCCEEEEecCC---CeEEEEecccCeeee--ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 78 GLSPNSVD--ALLKLDEDRVITGSEN---GLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 78 ~~~~~~v~--~~~~~~~~~l~~~~~d---~~v~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
. -..+.. ++..-+|+..+.|+.+ ..+..||.++.+-.. .+..... .. +++ .-+++..+.|+ .+.+|
T Consensus 348 ~-l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~-~~-~~~-~~~~~IYv~GG---~~e~y 420 (480)
T PHA02790 348 S-LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY-KS-CAL-VFGRRLFLVGR---NAEFY 420 (480)
T ss_pred C-CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc-cc-eEE-EECCEEEEECC---ceEEe
Confidence 1 111111 2234467777777754 347788887654322 2221111 11 122 23555555553 46778
Q ss_pred eCCCc
Q 029743 151 DLDDI 155 (188)
Q Consensus 151 d~~~~ 155 (188)
|.++.
T Consensus 421 dp~~~ 425 (480)
T PHA02790 421 CESSN 425 (480)
T ss_pred cCCCC
Confidence 77654
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.63 E-value=5.1 Score=27.61 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=37.0
Q ss_pred CeEEEEeCCCcEEEEEcCC--CceeeeecccccceEEEEEEeCCCEEEEecC
Q 029743 8 MKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ 57 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 57 (188)
..|+.+...+.|.+|++.. .+.+..+.. -+.|..+.++..|++|++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEe
Confidence 5565556678899999883 345556653 478999999999999998543
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.61 E-value=6.5 Score=28.78 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=44.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcC------CC-ceeeeecc-----cccceEEEEEEeCCC------------EEEEec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLR------KN-TVQTRSEF-----SEEELTSVVLMKNGR------------KVVCGS 56 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~~~~ 56 (188)
|+|+|.+.+-++....+...+||.. .. .++-.++. .....+.+.|+.... .++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 5788988777777777889999986 12 22233331 124577888874332 357788
Q ss_pred CCCeEEEEEeC
Q 029743 57 QSGTVLLYSWG 67 (188)
Q Consensus 57 ~d~~i~~~d~~ 67 (188)
++|+|.-|...
T Consensus 108 EdGTisaW~p~ 118 (336)
T TIGR03118 108 EDGTLSGWAPA 118 (336)
T ss_pred CCceEEeecCc
Confidence 99999999853
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.46 E-value=4.3 Score=31.40 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=57.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee----eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
+.||+|.+.||.--.+.+|.+++....+.. ...+.....|....|+.+ .-++.-... -+.+|.+....+.++..
T Consensus 72 IkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslRlV 149 (657)
T KOG2377|consen 72 IKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLRLV 149 (657)
T ss_pred EEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhhhh
Confidence 469999999999999999999998543332 222334556899999876 444444433 36777765545555555
Q ss_pred eeccCCceeE-EeecCCCEE
Q 029743 77 VGLSPNSVDA-LLKLDEDRV 95 (188)
Q Consensus 77 ~~~~~~~v~~-~~~~~~~~l 95 (188)
+. +...|.= ++.++-+.+
T Consensus 150 ks-~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 150 KS-HNLNVNWYMYCPETAVI 168 (657)
T ss_pred hh-cccCccEEEEccccceE
Confidence 55 4443332 245555443
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=89.39 E-value=5.9 Score=27.99 Aligned_cols=134 Identities=11% Similarity=0.095 Sum_probs=66.6
Q ss_pred EEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC---CeEEEEEeCC-ccccc-----ceeeeccCCceeEEeec
Q 029743 20 SVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGY-FKDCS-----DRFVGLSPNSVDALLKL 90 (188)
Q Consensus 20 ~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~-~~~~~-----~~~~~~~~~~v~~~~~~ 90 (188)
.+||+.+++..-.-....-.+.+-.+-+||+.|.+|+.. ..+++++... ...+. ..+.. .+-..+...-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceECC
Confidence 356666554321111122223344566789999887763 3577777533 11111 11222 22223333468
Q ss_pred CCCEEEEecCCCe-EEEEeccc-Ce-ee--eecc---cCCCccee-EEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 91 DEDRVITGSENGL-ISLVGILP-NR-II--QPIA---EHSEYPIE-SLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 91 ~~~~l~~~~~d~~-v~~~d~~~-~~-~~--~~~~---~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
||+.++.|+.... ..+|.... .. .. ..+. .......+ .+...|+|+.++.+..+.. |||..+..
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n~ 200 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTNT 200 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCCe
Confidence 9999999887643 44554321 11 11 1111 01010112 4566799999988876654 45665543
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=89.33 E-value=7.6 Score=29.21 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=53.3
Q ss_pred cceEEEEEEeCCCEEEEec-----------CCC-eEEEEEeCC-ccc--ccceeeeccCCceeEE-eecCCCEEEEecCC
Q 029743 38 EELTSVVLMKNGRKVVCGS-----------QSG-TVLLYSWGY-FKD--CSDRFVGLSPNSVDAL-LKLDEDRVITGSEN 101 (188)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~~~d~~~-~~~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d 101 (188)
.....|+|.++|+++++.. ..+ .|.+++-.. .+. ....+.. .-.....+ +.++| |++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEeCCC
Confidence 3467889999999877753 223 666665422 122 2233333 33344666 67777 4444444
Q ss_pred CeEEEEecccC-----e--ee-eecccC---CCcceeEEEeeCCCCEEEEEe
Q 029743 102 GLISLVGILPN-----R--II-QPIAEH---SEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 102 ~~v~~~d~~~~-----~--~~-~~~~~~---~~~~v~~~~~~~~~~~l~~~~ 142 (188)
...++.+.... + .+ ..+... .......++|.|||.+.++.+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 43334344211 1 11 122221 012477899999998766444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.25 E-value=7.4 Score=28.92 Aligned_cols=108 Identities=12% Similarity=0.065 Sum_probs=56.3
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeee
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~ 115 (188)
...+..+.+.|++.+++++. .|.+..- .+..++............+..+ +.++++.++++. .|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence 44678888888876665554 4444321 1122222222222033456676 678888776654 566643223333322
Q ss_pred eecccC---CCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 116 QPIAEH---SEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 116 ~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
.....+ ....+..+.+.+++..++ ++.+|.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~ 283 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL 283 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE
Confidence 211111 112578889998877555 44566554
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=88.29 E-value=1.7 Score=20.55 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.9
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeec
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSE 34 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~ 34 (188)
.++.++.+|.|+-+|.++|+.+...+
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 45666889999999999999887766
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.04 E-value=14 Score=30.57 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=32.8
Q ss_pred eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC
Q 029743 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 88 ~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 135 (188)
.||+.++|+.-...|.|.+-+.+..++...+......+...++|..+.
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 688999999999999999988877666655542221133466666544
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=87.74 E-value=3.4 Score=24.14 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=27.9
Q ss_pred cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 99 ~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
..+|.+.-||+.+++....+.+- . -.+.+++++|+.+|+.+-
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L-~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL-Y-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE-S-SEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC-C-ccCeEEEcCCCCEEEEEe
Confidence 34567888999888765555544 2 468899999999877654
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.71 E-value=12 Score=32.08 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=67.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~- 78 (188)
+..|-..++++| -...+++|++...++++... .-+..|+.+.+ .+..+++|.....+..+-.+.....+..+..
T Consensus 940 Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 940 AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 456655555554 44789999998776655443 23556777776 5678888888777887777654455555543
Q ss_pred ccCCceeEEeecCCCEEEEecCCCeEEEEec
Q 029743 79 LSPNSVDALLKLDEDRVITGSENGLISLVGI 109 (188)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~ 109 (188)
.....+++++.-|...++.+..-|.+.+..+
T Consensus 1017 ~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CccceeeEEEEecCCceeeccccCcEEEEEC
Confidence 0223455555556667777777777776654
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.57 E-value=9.3 Score=28.07 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=32.6
Q ss_pred CCCEEEEecC-----CCeEEEEEeCCcccccceeeec-cCCcee-EEeecCCCEEEEecCCC----eEEEEecccCe
Q 029743 48 NGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGL-SPNSVD-ALLKLDEDRVITGSENG----LISLVGILPNR 113 (188)
Q Consensus 48 ~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~l~~~~~d~----~v~~~d~~~~~ 113 (188)
++++.+.|+. ...+..||+.+. ....+... ...... ++...++++.+.|+.++ .+..||+.+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCC--CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 5666666664 235777887542 22222110 001111 12345667777777553 35688887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=87.47 E-value=10 Score=28.47 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=60.5
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeeccc--ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
.++.+..+|.|.-+|..++..+...... ...+..-....+|+ ++.++.++.+..+|.++ +..+..... .. . ..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~-~~-~-~~ 144 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNV-GG-S-PY 144 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEec-CC-C-eE
Confidence 4555577888888898888866543322 13334444444665 77778888777777754 455554443 33 1 11
Q ss_pred Eee---cCCCEEEEecCCCeEEEEecccCeeeeec
Q 029743 87 LLK---LDEDRVITGSENGLISLVGILPNRIIQPI 118 (188)
Q Consensus 87 ~~~---~~~~~l~~~~~d~~v~~~d~~~~~~~~~~ 118 (188)
... .....+...+.++.+.-.+..++..+...
T Consensus 145 ~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 145 YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTY 179 (370)
T ss_pred EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEE
Confidence 111 12233444446777777777777765553
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=87.12 E-value=13 Score=29.16 Aligned_cols=66 Identities=9% Similarity=-0.057 Sum_probs=35.6
Q ss_pred cCCCEEEEecCC----CeEEEEecccCeeeeecc---cCCCcceeEEEeeCCCCEEEEEeCC--------------CcEE
Q 029743 90 LDEDRVITGSEN----GLISLVGILPNRIIQPIA---EHSEYPIESLALSHDRKFLGSISHD--------------SMLK 148 (188)
Q Consensus 90 ~~~~~l~~~~~d----~~v~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~ 148 (188)
-+++.++.++.+ ..+.+||+.+.+-...-. .+......+++ .-+++.++.++.. +.+.
T Consensus 327 ~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 327 VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEE
Confidence 356666666644 458899988765332211 01110112222 2256677777742 2478
Q ss_pred EEeCCCcc
Q 029743 149 LWDLDDIL 156 (188)
Q Consensus 149 iwd~~~~~ 156 (188)
+||+.+..
T Consensus 406 ~~D~~t~~ 413 (470)
T PLN02193 406 ALDTETLQ 413 (470)
T ss_pred EEEcCcCE
Confidence 88887664
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=86.74 E-value=9.1 Score=27.08 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=62.7
Q ss_pred eecccCeEEEEeCC---CcEEEEEcCC--Cceee-----eecccccceEEEEEEeCCCEEEEecCCC-eEEEEEeCCccc
Q 029743 3 FAADAMKLLGTSGD---GTLSVCNLRK--NTVQT-----RSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKD 71 (188)
Q Consensus 3 ~s~~~~~l~~~~~d---~~i~i~~~~~--~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~ 71 (188)
+-|||++|.+|+.. ..+++++... +.+.. .+. ....--....-|||+.|+.|+... +...|.-.....
T Consensus 74 ~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 74 FLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence 56899999998762 4577787644 11110 111 122233444567999999988774 344444321111
Q ss_pred ccce---eeec---cCCcee-EE-eecCCCEEEEecCCCeEEEEecccCeeeeecccC
Q 029743 72 CSDR---FVGL---SPNSVD-AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 72 ~~~~---~~~~---~~~~v~-~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 121 (188)
.... +... .....+ .+ ..|+|++++.+..+. .|||..+.+.++.+..-
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPDL 208 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCC
Confidence 1111 1100 111122 22 379999999888754 46788777766666543
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=86.69 E-value=13 Score=28.95 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=32.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCce--eeeec-----ccccceEEEEEEeCC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSE-----FSEEELTSVVLMKNG 49 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~-----~~~~~v~~~~~~~~~ 49 (188)
|+|.|||++|++--..|.|++++...+.. +..+. .-......|+++|+-
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 57899997777654469999988654422 21121 124668999999873
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=85.76 E-value=10 Score=32.07 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=50.1
Q ss_pred EEecCCCeEEEEEeCCccccccee-eeccCCceeEE-eecCCCEEEE-ecCCC-----eEEEEeccc-CeeeeecccCCC
Q 029743 53 VCGSQSGTVLLYSWGYFKDCSDRF-VGLSPNSVDAL-LKLDEDRVIT-GSENG-----LISLVGILP-NRIIQPIAEHSE 123 (188)
Q Consensus 53 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~l~~-~~~d~-----~v~~~d~~~-~~~~~~~~~~~~ 123 (188)
+.....+.+.+-|... ...+.+ .. +..++..- |||||++|+. .+..+ .|++-++++ +.-+..+....
T Consensus 323 fv~~~~~~L~~~D~dG--~n~~~ve~~-~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~- 398 (912)
T TIGR02171 323 FRNDVTGNLAYIDYTK--GASRAVEIE-DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN- 398 (912)
T ss_pred EEEcCCCeEEEEecCC--CCceEEEec-CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc-
Confidence 3333335788888763 333334 33 66777777 8999999987 44333 488888875 33334444442
Q ss_pred cceeEEEeeCCCCEEE
Q 029743 124 YPIESLALSHDRKFLG 139 (188)
Q Consensus 124 ~~v~~~~~~~~~~~l~ 139 (188)
+.|-.-...++|..++
T Consensus 399 aaiprwrv~e~gdt~i 414 (912)
T TIGR02171 399 AAIPRWRVLENGDTVI 414 (912)
T ss_pred ccccceEecCCCCeEE
Confidence 2566666667776543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=84.62 E-value=13 Score=26.97 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=54.9
Q ss_pred CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec------CCCeEEEEEeCCcccccceeee----ccCCceeE
Q 029743 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVG----LSPNSVDA 86 (188)
Q Consensus 17 ~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~----~~~~~v~~ 86 (188)
..|.+||....+=...-.+-.+.|+++.|..+.+.++.|. ....+..||+.. .....+.. .-.+++..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcEEE
Confidence 5688999877654444445667899999986666666653 345688888864 23323322 02356666
Q ss_pred E-e-ecCCC-EEEEec-CC--CeEEEEecccC
Q 029743 87 L-L-KLDED-RVITGS-EN--GLISLVGILPN 112 (188)
Q Consensus 87 ~-~-~~~~~-~l~~~~-~d--~~v~~~d~~~~ 112 (188)
+ + ..++. ..+.|. .+ ..|..||=...
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 6 3 44554 443443 22 34666764433
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=83.60 E-value=2.7 Score=18.36 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=14.6
Q ss_pred eEEEEEEeCCCEEEEecCCCeEEEE
Q 029743 40 LTSVVLMKNGRKVVCGSQSGTVLLY 64 (188)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~~~ 64 (188)
...++..++|+.+++-.....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4566666666666665555555543
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.44 E-value=21 Score=28.44 Aligned_cols=80 Identities=10% Similarity=0.101 Sum_probs=47.6
Q ss_pred ceEEEEEEeCCCEEEEecCCCeEEEEEeCCc--------cccc---c-------eeeeccCCceeEE-eecCC---CEEE
Q 029743 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--------KDCS---D-------RFVGLSPNSVDAL-LKLDE---DRVI 96 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--------~~~~---~-------~~~~~~~~~v~~~-~~~~~---~~l~ 96 (188)
.|..+..++.|..++-++.+|.+.++=.+.. +... + .+.....-.+..+ |+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3567778889999998888886655431110 1111 0 1111001113333 67754 6777
Q ss_pred EecCCCeEEEEecccCeeeeec
Q 029743 97 TGSENGLISLVGILPNRIIQPI 118 (188)
Q Consensus 97 ~~~~d~~v~~~d~~~~~~~~~~ 118 (188)
.-..|+.|++||+.....+...
T Consensus 185 iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EEecCcEEEEEecCCcchhhcc
Confidence 8888999999999876655443
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=82.74 E-value=17 Score=26.90 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=62.3
Q ss_pred eEEEEEEeCCCEEEEecCC------CeEEEEEeCCcccccceee-e-------------ccCCceeEE-eecCCCEEEEe
Q 029743 40 LTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCSDRFV-G-------------LSPNSVDAL-LKLDEDRVITG 98 (188)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~-~-------------~~~~~v~~~-~~~~~~~l~~~ 98 (188)
..+|++.+++.++++.-.+ ..|..++.+ +.....+. . .......++ ++|+|+.|+++
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 4478887788887777666 677777754 33333321 0 022346677 68999966655
Q ss_pred cC-----CC-----------eEEEEeccc-Cee----eeeccc----CCCcceeEEEeeCCCCEEEEEe-----CCCcEE
Q 029743 99 SE-----NG-----------LISLVGILP-NRI----IQPIAE----HSEYPIESLALSHDRKFLGSIS-----HDSMLK 148 (188)
Q Consensus 99 ~~-----d~-----------~v~~~d~~~-~~~----~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~ 148 (188)
.. |+ .|..||..+ +.. ...+.. .....|..+.+.+++++|+.-- ....++
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~r 244 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKR 244 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEE
Confidence 32 22 233455544 322 222221 0234689999999998776332 234455
Q ss_pred EEeCC
Q 029743 149 LWDLD 153 (188)
Q Consensus 149 iwd~~ 153 (188)
||.+.
T Consensus 245 i~~v~ 249 (326)
T PF13449_consen 245 IYRVD 249 (326)
T ss_pred EEEEE
Confidence 55443
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=82.21 E-value=18 Score=26.83 Aligned_cols=40 Identities=8% Similarity=0.031 Sum_probs=18.3
Q ss_pred CcEEEEEcCCCce--eeeecccccceEEEEEEeCCCEEEEecC
Q 029743 17 GTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ 57 (188)
Q Consensus 17 ~~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 57 (188)
..+.+||..+.+= +..++ ...........-++++.+.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p-~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENP-FLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCC-CCcCCCceEEEECCEEEEEeee
Confidence 4577888776432 22222 1111111122336677777664
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=82.11 E-value=28 Score=28.90 Aligned_cols=147 Identities=11% Similarity=0.025 Sum_probs=70.0
Q ss_pred CeeecccCeEEEEeCC------CcEEEEEcCCC--ceeeeecccccceEEEEEEe-CCCEEEEecC---CCeEEEEEeCC
Q 029743 1 MTFAADAMKLLGTSGD------GTLSVCNLRKN--TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQ---SGTVLLYSWGY 68 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d------~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~---d~~i~~~d~~~ 68 (188)
++|++|++.|+....+ ..|+.+++.++ +....+........-..+.+ ++++++..+. ++.+.+++...
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 4688998877766442 36777788776 33334443333333223333 7777655433 35788888543
Q ss_pred cccccceeeeccC-CceeEEeecCCCEEEEecC----CCeEEEEecc-cCeeeeecccC-CCcceeEEEeeCCCCEEEEE
Q 029743 69 FKDCSDRFVGLSP-NSVDALLKLDEDRVITGSE----NGLISLVGIL-PNRIIQPIAEH-SEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 69 ~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~----d~~v~~~d~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 141 (188)
.......+.. +. .....+.+.. ..+...++ ...|...++. .++. ..+..+ .+..+..+.+.. ...+++.
T Consensus 257 ~~~~~~~~~~-~~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~ 332 (686)
T PRK10115 257 ADAEPFVFLP-RRKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEE 332 (686)
T ss_pred CCCCceEEEE-CCCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEE
Confidence 2122222222 22 2222223333 33333332 2234444544 2222 223233 233677788773 3344555
Q ss_pred eCCCcEEEEe
Q 029743 142 SHDSMLKLWD 151 (188)
Q Consensus 142 ~~d~~i~iwd 151 (188)
..++.-+++-
T Consensus 333 ~~~g~~~l~~ 342 (686)
T PRK10115 333 RQRGLTSLRQ 342 (686)
T ss_pred EeCCEEEEEE
Confidence 5566544443
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=80.29 E-value=13 Score=27.14 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=0.0
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeE-----EEeeCCCCEEEEEeCCCcEEEEe
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-----LALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
+.++ ..++|.+|++.-.-..|.+.+.++|+.+..+.+... .-.. .++-.+-+++-....++.|.+||
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~-~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRN-SDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCC-CcccccCCcEeeccCCEEeccCCCCCEEEEEc
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=80.23 E-value=26 Score=27.41 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=24.4
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeC
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 67 (188)
-...+.|+|.|++++|++--..|.|++++..
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~ 59 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPE 59 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCC
Confidence 3457899999999888776656899988754
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 188 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.98 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.98 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.98 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.98 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.97 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.96 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.96 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.96 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.95 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.95 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.95 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.95 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.95 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.95 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.95 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.95 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.95 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.94 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.94 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.94 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.94 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.94 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.94 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.94 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.94 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.94 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.93 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.93 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.93 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.93 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.93 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.93 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.92 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.92 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.92 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.92 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.92 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.92 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.91 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.91 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.9 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.9 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.87 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.87 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.87 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.85 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.84 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.82 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.82 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.8 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.8 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.8 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.8 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.8 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.79 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.79 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.78 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.77 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.77 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.77 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.77 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.76 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.76 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.76 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.75 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.75 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.74 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.74 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.74 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.74 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.73 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.73 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.73 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.73 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.72 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.7 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.7 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.68 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.68 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.67 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.66 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.64 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.62 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.61 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.59 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.59 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.57 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.55 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.54 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.53 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.51 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.5 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.5 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.5 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.5 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.49 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.49 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.48 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.47 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.46 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.45 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.45 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.45 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.43 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.43 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.42 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.42 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.4 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.4 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.4 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.34 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.31 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.31 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.3 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.28 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.25 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.24 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.24 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.23 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.23 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.19 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.18 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.17 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.17 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.16 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.16 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.16 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.13 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.13 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.09 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.09 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.05 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.05 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.02 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.02 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.0 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.98 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.96 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.95 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.94 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.9 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.9 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.89 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.88 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.88 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.86 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.83 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.81 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.81 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.81 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.78 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.78 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.72 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.68 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.66 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.66 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.62 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.59 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.53 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.53 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.49 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.49 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.48 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.48 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.46 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.45 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.42 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.41 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.37 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.36 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.35 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.32 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.31 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.3 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.28 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.28 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.27 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.25 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.24 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.22 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.22 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.18 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.16 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.14 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.11 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.08 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.07 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.06 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.02 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.95 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.93 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.92 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.88 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.86 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.84 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.83 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.81 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.77 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.74 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.63 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.63 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.63 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.59 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.59 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.56 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.55 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.52 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.51 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.49 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.45 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.45 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.44 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.43 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.39 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.39 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.38 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.32 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.29 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.28 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.25 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.23 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.22 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.11 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.1 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.09 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.06 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.04 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.01 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.95 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.84 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.83 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.78 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.76 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.76 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.54 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.53 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.46 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.43 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.29 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.27 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.23 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.15 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.14 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.01 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.82 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.79 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.48 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.3 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.25 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.86 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 94.37 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.03 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.91 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.59 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 93.45 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 93.4 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 92.66 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 92.45 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 92.16 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 90.37 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 90.37 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 89.98 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 88.58 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 87.89 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 87.82 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 85.99 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 85.5 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 84.86 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.45 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 83.9 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 81.1 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=201.32 Aligned_cols=150 Identities=12% Similarity=0.238 Sum_probs=141.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.|+.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.|+.|++||++. +.....+.+ |
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~-h 247 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSG-H 247 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECC-C
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999986 567778888 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
...+.++ |+|++++|++++.|+.|++||+++++++..+.+|.+ .|.+++|+|++++|++++.|+.|++||..
T Consensus 248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD-QVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999 899999999999999999999999999999999976 89999999999999999999999999963
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=196.66 Aligned_cols=154 Identities=16% Similarity=0.243 Sum_probs=141.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.|+.|++||+.++..+..+..|..+|.+++|+|++++|++++.|+.|++||+.+ ++.+..+.+ |
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~-h 96 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-H 96 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC-CcEEEEEeC-C
Confidence 57999999999999999999999999999999999999999999999999999999999999999986 577888899 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccC-eeeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
...+.++ |+|+++++++|+.|+.|++||++++ .....+.+|.. .|.+++|+| ++..|++++.|+.|++||+++...
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~ 175 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS-CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC
T ss_pred CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC-cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 9999999 8999999999999999999999887 45567888866 899999999 678999999999999999976543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=195.59 Aligned_cols=155 Identities=15% Similarity=0.289 Sum_probs=145.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.++.|++|++..++....+..|...+.+++|+|++++|++++.|+.|++||++. +..+..+.+ |
T Consensus 128 ~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~-h 205 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEG-H 205 (321)
T ss_dssp EEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC-C
T ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcc-c
Confidence 47999999999999999999999999998888888999999999999999999999999999999986 577788888 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
..++.++ |+|++++|++++.|+.|++||+++++....+.+|.. .|.+++|+|++++|++++.|+.|++||+++....
T Consensus 206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 9999999 899999999999999999999999999999999976 8999999999999999999999999999876644
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=196.76 Aligned_cols=157 Identities=19% Similarity=0.198 Sum_probs=134.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccceeee-
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~- 78 (188)
|+|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .+|++++.|+.|++||++. ++....+..
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~ 211 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCS 211 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEECC--
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cceeeeeecc
Confidence 4799999999999999999999999999999999999999999999988 4788999999999999986 455554432
Q ss_pred ccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeCCCc
Q 029743 79 LSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 79 ~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (188)
.+...+.++ |+| +++++++|+.|+.|++||+++++++..+.+|.. .|++++|+|++ ++|++++.|++|+|||+++.
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 045567788 787 566889999999999999999999999999976 89999999998 57899999999999999887
Q ss_pred cCCC
Q 029743 156 LKGS 159 (188)
Q Consensus 156 ~~~~ 159 (188)
+...
T Consensus 291 ~~~~ 294 (344)
T 4gqb_B 291 ELFR 294 (344)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 6443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=200.66 Aligned_cols=154 Identities=14% Similarity=0.275 Sum_probs=145.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++|+.|++|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.. ..++..+.+ |
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-~~~~~~~~~-h 191 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHG-H 191 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-SCEEECCCC-C
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEEcC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 577888888 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
...|.++ |+|+++++++++.|+.|++||++++.++..+.+|.. .|.++.|+|++.+|++++.|+.|++||+.+...
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~ 268 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 9999999 899999999999999999999999999999999976 899999999999999999999999999987653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=189.16 Aligned_cols=154 Identities=15% Similarity=0.285 Sum_probs=144.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.|+.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++||++. +..+..+.+ |
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~-~ 106 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKG-H 106 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC-CcEEEEEcC-C
Confidence 47999999999999999999999999998889999999999999999999999999999999999986 577788888 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
...+.++ |+|+++++++++.|+.|++||+++++++..+..|.. +|.+++|+|++++|++++.|+.|++||+++...
T Consensus 107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 183 (312)
T 4ery_A 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Confidence 9999999 899999999999999999999999999999988866 899999999999999999999999999987653
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-31 Score=187.86 Aligned_cols=156 Identities=18% Similarity=0.192 Sum_probs=135.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC-ceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccccccee-e
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF-V 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~ 77 (188)
++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+| ++..|++++.|+.|++||++.. .....+ .
T Consensus 103 ~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~-~~~~~~~~ 181 (304)
T 2ynn_A 103 IAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-TPNFTLTT 181 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS-SCSEEEEC
T ss_pred EEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-Cccceecc
Confidence 479999999999999999999999877 45567789999999999999 6789999999999999999764 333334 3
Q ss_pred eccCCceeEE-ee--cCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 78 GLSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 78 ~~~~~~v~~~-~~--~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
+ +...+..+ ++ ++++++++++.|+.|++||+++++++..+.+|.. .|.+++|+|++++|++++.|+.|++||+++
T Consensus 182 ~-~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 182 G-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp C-CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred C-CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 4 55677777 65 4788999999999999999999999999999976 899999999999999999999999999988
Q ss_pred ccCCC
Q 029743 155 ILKGS 159 (188)
Q Consensus 155 ~~~~~ 159 (188)
.....
T Consensus 260 ~~~~~ 264 (304)
T 2ynn_A 260 YKVEK 264 (304)
T ss_dssp CCEEE
T ss_pred Cceee
Confidence 76443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-31 Score=189.07 Aligned_cols=153 Identities=20% Similarity=0.300 Sum_probs=141.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||++ +.++..+.+ |
T Consensus 71 ~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~-h 147 (319)
T 3frx_A 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLG-H 147 (319)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT--SCEEEEECC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEec-c
Confidence 4689999999999999999999999999999999999999999999999999999999999999996 467778888 9
Q ss_pred CCceeEE-eecC------CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 81 PNSVDAL-LKLD------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 81 ~~~v~~~-~~~~------~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
...+.++ ++|. +.++++++.|+.|++||+++.+....+.+|.. .|.+++|+|++++|++++.|+.|++||+.
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 9999999 7774 55899999999999999999999889999976 89999999999999999999999999998
Q ss_pred CccC
Q 029743 154 DILK 157 (188)
Q Consensus 154 ~~~~ 157 (188)
+...
T Consensus 227 ~~~~ 230 (319)
T 3frx_A 227 AKKA 230 (319)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 7654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-31 Score=191.00 Aligned_cols=149 Identities=15% Similarity=0.260 Sum_probs=134.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-c
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-L 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~ 79 (188)
++|+|+++++++|+.|+.|++||+.++.....+.+|...|.+++|+|++++|++++.|+.|++||++. ...+..+.. .
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~ 268 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDN 268 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999986 344444432 0
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
+...+.++ |+|+|+++++|+.|+.|++||+.+++.+..+.+|.. +|.+++|+|++.+|++++.|+.|++||
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC-cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 23468888 899999999999999999999999999999999976 899999999999999999999999997
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=191.02 Aligned_cols=151 Identities=14% Similarity=0.143 Sum_probs=121.4
Q ss_pred CeeecccCeEEEEe--CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc-------
Q 029743 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD------- 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------- 71 (188)
++|||||+++++++ .|++|+|||+++++++..+. |...|.+++|+|+|+++++++.++ +.+|+......
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~ 216 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDF 216 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCC
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecC
Confidence 47999999987654 68999999999998877765 667788888888888888877554 44444322100
Q ss_pred --------------------------------------------ccceeeeccCCceeEE-eecCCCEEEEecCCCeEEE
Q 029743 72 --------------------------------------------CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (188)
Q Consensus 72 --------------------------------------------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~ 106 (188)
....+.+ |...|.++ |+|+|++|++|+.|+.|+|
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMKGELAVLASNDNSIAL 295 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence 0112234 66778899 8999999999999999999
Q ss_pred EecccCeeeeec-ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 107 VGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 107 ~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
||+++++++..+ .+|.. +|++++|+||+++|++++.|++|+||++...
T Consensus 296 wd~~~~~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 296 VKLKDLSMSKIFKQAHSF-AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTTTEEEEEETTSSSS-CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EECCCCcEEEEecCcccC-CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999998874 78876 8999999999999999999999999999654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=188.56 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=130.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC-------CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc---
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--- 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--- 70 (188)
++|+|++++|++++.|++|++|++.. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||++..+
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 47999999999999999999999853 34566788999999999999999999999999999999995322
Q ss_pred cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC--eeeeecccCCCcceeEEEeeCC--CCEEEEEeCCC
Q 029743 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLALSHD--RKFLGSISHDS 145 (188)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~ 145 (188)
.++..+.+ |...+.++ |+|++.+|++++.|+.|++||+.++ +++..+.+|.. .|.+++|+|+ +.+|++++.|+
T Consensus 144 ~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 144 ECISVLQE-HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp EEEEEECC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCSSSSCEEEEEETTS
T ss_pred EEEEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEEEEecCCCCeeEEEEEeCCC
Confidence 34566788 99999999 8999999999999999999999876 67788899976 8999999998 67899999999
Q ss_pred cEEEEeCCCc
Q 029743 146 MLKLWDLDDI 155 (188)
Q Consensus 146 ~i~iwd~~~~ 155 (188)
+|++||++..
T Consensus 222 ~v~iw~~~~~ 231 (330)
T 2hes_X 222 TVRVWKYMGD 231 (330)
T ss_dssp CEEEEEEEEE
T ss_pred eEEEEEecCC
Confidence 9999998764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-30 Score=188.35 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=135.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC--ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc--ccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~ 76 (188)
++|+|++++|++++.|+++++|++..+ +.+..+.+|...|.+++|+|++++|++++.|+.|++||++... .++..+
T Consensus 67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence 479999999999999999999999876 4567788999999999999999999999999999999997532 345567
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe--eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.+ |...+.++ |+|++++|++++.|+.|++|+++++. +...+.+|.. .|.+++|+|++++|++++.|+.|++|++.
T Consensus 147 ~~-h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 147 NS-HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp CC-CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cC-cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 77 88999999 89999999999999999999998775 4567888866 89999999999999999999999999974
Q ss_pred C
Q 029743 154 D 154 (188)
Q Consensus 154 ~ 154 (188)
.
T Consensus 225 ~ 225 (345)
T 3fm0_A 225 L 225 (345)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=192.38 Aligned_cols=155 Identities=15% Similarity=0.240 Sum_probs=143.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.++|++++|++++.|+.|++||+.. +.+...+.+ |
T Consensus 198 v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~-h 275 (410)
T 1vyh_C 198 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELRE-H 275 (410)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECC-C
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecC-C
Confidence 47899999999999999999999999999999999999999999999999999999999999999986 577778888 9
Q ss_pred CCceeEE-eecC--------------------CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEE
Q 029743 81 PNSVDAL-LKLD--------------------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 81 ~~~v~~~-~~~~--------------------~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
...+.++ |+|+ |.++++|+.|+.|++||++++.++..+.+|.. .|.+++|+|++++|+
T Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~ 354 (410)
T 1vyh_C 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFIL 354 (410)
T ss_dssp SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEE
T ss_pred CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEE
Confidence 9999999 8885 67899999999999999999999999999976 899999999999999
Q ss_pred EEeCCCcEEEEeCCCccCC
Q 029743 140 SISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~ 158 (188)
+++.|+.|++||+.+....
T Consensus 355 s~s~D~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 355 SCADDKTLRVWDYKNKRCM 373 (410)
T ss_dssp EEETTTEEEEECCTTSCCC
T ss_pred EEeCCCeEEEEECCCCceE
Confidence 9999999999999876543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=189.58 Aligned_cols=153 Identities=14% Similarity=0.213 Sum_probs=134.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceee---eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc-ccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT---RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~ 76 (188)
++|+|+|++|++|+.|++|+||++..+.... ...+|...|.+++|+|++++|++++.|+.+++|++.... .++..+
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 101 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL 101 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc
Confidence 5799999999999999999999998875332 235899999999999999999999999999999997532 456778
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe---eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.+ |...|.++ |+|++++|++++.|+.|++||++++. ++..+.+|.. .|.+++|+|++++|++++.|+.|++||+
T Consensus 102 ~~-h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~ 179 (345)
T 3fm0_A 102 EG-HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYRE 179 (345)
T ss_dssp CC-CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEE
T ss_pred cC-CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEe
Confidence 88 99999999 89999999999999999999998653 4566778866 8999999999999999999999999998
Q ss_pred CCc
Q 029743 153 DDI 155 (188)
Q Consensus 153 ~~~ 155 (188)
++.
T Consensus 180 ~~~ 182 (345)
T 3fm0_A 180 EED 182 (345)
T ss_dssp ETT
T ss_pred cCC
Confidence 764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=189.84 Aligned_cols=155 Identities=13% Similarity=0.164 Sum_probs=119.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCc----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYF---------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~---------- 69 (188)
|+|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++. .+++++.|+.|++||++..
T Consensus 145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~ 224 (357)
T 4g56_B 145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA 224 (357)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc
Confidence 47999999999999999999999999888777777777777666666543 4445555555555554321
Q ss_pred ----------------------------------ccccceeeeccCCceeEE-eecCC-CEEEEecCCCeEEEEecccCe
Q 029743 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNR 113 (188)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~v~~~d~~~~~ 113 (188)
+.++..+.+ |...+.++ |+|++ ++|++++.|+.|+|||+++++
T Consensus 225 ~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 225 SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV-HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec-cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 344555666 88889999 89987 578999999999999999998
Q ss_pred eeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 114 IIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 114 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
++..+ +|.+ .|++++|+| ++++|++++.|+.|++|++......
T Consensus 304 ~~~~~-~H~~-~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 304 VFRDL-SHRD-FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEEEC-CCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred EeEEC-CCCC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 87665 6766 899999998 7899999999999999999765433
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=182.98 Aligned_cols=155 Identities=17% Similarity=0.294 Sum_probs=141.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++. +..+..+.. |
T Consensus 71 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~-~ 148 (312)
T 4ery_A 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPA-H 148 (312)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-CCEEEEECC-C
T ss_pred EEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CEEEEEecC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999986 567777888 8
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
..++.++ |+|+++++++++.|+.|++||+++++.+..+..+...++..++|+|++++|++++.|+.|++||+++...
T Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 8999999 8999999999999999999999998887776544344799999999999999999999999999987653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=187.95 Aligned_cols=152 Identities=19% Similarity=0.307 Sum_probs=133.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++. +.+...+. +
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~--~ 205 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLS--I 205 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE--C
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEEEEE--c
Confidence 47999999999999999999999999999999999999999999999999999999999999999986 45555554 4
Q ss_pred CCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeec-------ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPI-------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
...+.++ ++| +++++++++.|+.|++||++++..+..+ .+|.. .|.+++|+|++++|++++.|+.|++||
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 5667777 788 8999999999999999999998877665 46755 899999999999999999999999999
Q ss_pred CCCcc
Q 029743 152 LDDIL 156 (188)
Q Consensus 152 ~~~~~ 156 (188)
+++..
T Consensus 285 ~~~~~ 289 (393)
T 1erj_A 285 LQNAN 289 (393)
T ss_dssp C----
T ss_pred CCCCC
Confidence 98654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=183.77 Aligned_cols=154 Identities=20% Similarity=0.300 Sum_probs=139.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc---cccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---DCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~ 77 (188)
++|+|++++|++++.|++|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.+++|++.... .....+.
T Consensus 61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 140 (340)
T 1got_B 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec
Confidence 4799999999999999999999999999988999999999999999999999999999999999997532 2345567
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+ |...+.++ |++++. +++++.|+.|++||+++++++..+.+|.+ .|.+++|+|++++|++++.|+.|++||+++..
T Consensus 141 ~-h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~ 217 (340)
T 1got_B 141 G-HTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217 (340)
T ss_dssp C-CSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred C-CCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCCe
Confidence 8 88999999 777764 88999999999999999999999999976 89999999999999999999999999998765
Q ss_pred C
Q 029743 157 K 157 (188)
Q Consensus 157 ~ 157 (188)
.
T Consensus 218 ~ 218 (340)
T 1got_B 218 C 218 (340)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=187.46 Aligned_cols=152 Identities=22% Similarity=0.311 Sum_probs=131.1
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcC-CCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+|+| ++++|++|+.|+.|++||++ .+..+..+.+|...|.+++|+|++++|++++.|++|++||++. +..+..+..
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~- 289 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNR- 289 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECC-
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecc-
Confidence 4555 78999999999999999997 4577778889999999999999999999999999999999986 455555543
Q ss_pred cC-------CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec----ccCCCcceeEEEeeCCCCEEEEEeCCCcE
Q 029743 80 SP-------NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI----AEHSEYPIESLALSHDRKFLGSISHDSML 147 (188)
Q Consensus 80 ~~-------~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 147 (188)
+. ..+.++ |+|+|+++++|+.||.|++||+.+++.+..+ .+|.+ .|.+++|+|++++|++++.|+.|
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG-RISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC-CCCEEEECSSSSEEEEECTTSCE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC-ceEEEEECCCCCEEEEeeCCCCE
Confidence 22 247788 8999999999999999999999988877665 56755 89999999999999999999999
Q ss_pred EEEeCCCcc
Q 029743 148 KLWDLDDIL 156 (188)
Q Consensus 148 ~iwd~~~~~ 156 (188)
++|++....
T Consensus 369 ~iW~~~~~~ 377 (380)
T 3iz6_a 369 KIWAFSGHR 377 (380)
T ss_dssp EEEECCSSS
T ss_pred EEEecCCCc
Confidence 999998653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=184.41 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=131.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeee----ecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR----SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
++|+|++ .|++|+.||+|+|||+.+++.+.. ..+|...|.+++|+|++++|++++.|++|++||+.+ +.++..+
T Consensus 88 ~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~~~ 165 (344)
T 4gqb_B 88 LTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSY 165 (344)
T ss_dssp EEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred EEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEEEE
Confidence 4789985 688999999999999998865443 347999999999999999999999999999999986 6888889
Q ss_pred eeccCCceeEE-eecCCC-EEEEecCCCeEEEEecccCeeeeecccCC-CcceeEEEeeCC-CCEEEEEeCCCcEEEEeC
Q 029743 77 VGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHD-RKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~ 152 (188)
.+ |...|.++ |+|++. ++++++.|+.|++||++++++...+..+. ...+.+++|+|+ +++|++++.|+.|++||+
T Consensus 166 ~~-h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 166 RA-HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CC-CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred cC-cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99 99999999 899875 78899999999999999998887764322 236899999995 567889999999999999
Q ss_pred CCccCCC
Q 029743 153 DDILKGS 159 (188)
Q Consensus 153 ~~~~~~~ 159 (188)
++.....
T Consensus 245 ~~~~~~~ 251 (344)
T 4gqb_B 245 KSTSCVL 251 (344)
T ss_dssp CC--CCE
T ss_pred CCCcEEE
Confidence 9876543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=183.97 Aligned_cols=148 Identities=18% Similarity=0.229 Sum_probs=131.0
Q ss_pred eeec--ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-
Q 029743 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (188)
Q Consensus 2 ~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~- 78 (188)
+|+| ++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|+++.|++++.|++|++||++.. ..+..+..
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~ 281 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSKE 281 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCC
Confidence 4555 6789999999999999999999999999999999999999999999999999999999999863 44444433
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.+...+.++ |+|+++++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|+.|++|+
T Consensus 282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~-~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN-RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC-cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 022357778 899999999999999999999999999999999976 899999999999999999999999996
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=181.20 Aligned_cols=149 Identities=17% Similarity=0.238 Sum_probs=131.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee---e
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---V 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~ 77 (188)
++|+|+++++++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.. ...... .
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~ 159 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG--ECKFSSAEKE 159 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS--CEEEECCTTT
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC--Cceeeeeccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999863 222222 2
Q ss_pred eccCCceeEE-eecCC----------CEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCc
Q 029743 78 GLSPNSVDAL-LKLDE----------DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~----------~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 146 (188)
. |...+.++ |+|++ .++++++.|+.|++||. .......+.+|.. .|.+++|+|++++|++++.|+.
T Consensus 160 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 160 N-HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp S-CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCE
T ss_pred C-CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCe
Confidence 5 77889999 88876 78999999999999994 5667778888866 8999999999999999999999
Q ss_pred EEEEeCCC
Q 029743 147 LKLWDLDD 154 (188)
Q Consensus 147 i~iwd~~~ 154 (188)
|++||+..
T Consensus 237 v~iwd~~~ 244 (343)
T 2xzm_R 237 LLIWDILN 244 (343)
T ss_dssp EEEEESSC
T ss_pred EEEEECCC
Confidence 99999954
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=195.16 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=135.9
Q ss_pred CeeecccC-eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee--
Q 029743 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-- 77 (188)
Q Consensus 1 l~~s~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-- 77 (188)
++|+|++. .|++++.|++|++||...++....+.+|...|.+++|+|++++|++++.|++|++||+.. +.....+.
T Consensus 153 v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~ 231 (611)
T 1nr0_A 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDD 231 (611)
T ss_dssp EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCT
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeeccc
Confidence 47999987 599999999999999998888889999999999999999999999999999999999875 45555553
Q ss_pred -----eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeee----------------------------------
Q 029743 78 -----GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP---------------------------------- 117 (188)
Q Consensus 78 -----~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~---------------------------------- 117 (188)
+ |...|.++ |+|+|++|++++.|++|++||+++++++..
T Consensus 232 ~~~~~~-h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 232 SLKNVA-HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310 (611)
T ss_dssp TSSSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred cccccc-cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEe
Confidence 6 88999999 899999999999999999999987765432
Q ss_pred ---------cccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 118 ---------IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 118 ---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+.+|.. .|.+++|+|++++|++++.|+.|++||+.+...
T Consensus 311 ~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 311 PELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp TTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCCcceEEcCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 346755 799999999999999999999999999987654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=178.28 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=131.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC--CceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcc-cccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~-~~~~~ 75 (188)
++|+|+|++|++|+.|++|+||++.. .+.+..+.+|..+|.+++|++ ++++|++++.|++|++||+.... ..+..
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~ 94 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV 94 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE
Confidence 47999999999999999999999974 356778889999999999986 38999999999999999997532 34556
Q ss_pred eeeccCCceeEE-eecC--CCEEEEecCCCeEEEEecccCe--eeeecccCCCcceeEEEeeCC-------------CCE
Q 029743 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHD-------------RKF 137 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~-------------~~~ 137 (188)
+.. |...+.++ |+|+ +.+|++++.|+.|++||++++. ....+.+|.. .|.+++|+|+ +++
T Consensus 95 ~~~-h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~~~~ 172 (297)
T 2pm7_B 95 HAV-HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 172 (297)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS-CEEEEEECCCC------------CCE
T ss_pred eec-CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC-ccceEeecCCcccccccCCCCCCcce
Confidence 777 88999999 8887 8999999999999999998763 2345677865 8999999997 578
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 029743 138 LGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (188)
|++++.|+.|++||+++..
T Consensus 173 l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 173 FVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp EEEEETTSCEEEEEEETTT
T ss_pred EEEEcCCCcEEEEEEcCCC
Confidence 9999999999999987643
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=181.39 Aligned_cols=155 Identities=17% Similarity=0.301 Sum_probs=138.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+|+++.|++++.|++|++||+.+++.+..+.+|...|.+++|+| +++.|++++.|+.|++||++. +.++..+..
T Consensus 160 ~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~ 238 (354)
T 2pbi_B 160 CSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFET 238 (354)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECC
T ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecC
Confidence 36899999999999999999999999999999999999999999988 568999999999999999986 577888888
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC-CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|...+.++ |+|++.++++++.|+.|++||++.+..+..+..+. ...+.+++|+|++++|++++.|+.|++||+.+..
T Consensus 239 -h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 239 -HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred -CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 99999999 89999999999999999999999888776665432 1268899999999999999999999999997765
Q ss_pred C
Q 029743 157 K 157 (188)
Q Consensus 157 ~ 157 (188)
.
T Consensus 318 ~ 318 (354)
T 2pbi_B 318 R 318 (354)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=193.14 Aligned_cols=145 Identities=21% Similarity=0.356 Sum_probs=134.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.|+.|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++|+.. +++++.+.+ |
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~~~~~~~-h 507 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTG-H 507 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCEEEEEEC-C
T ss_pred EEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCEEEEEeC-C
Confidence 479999999999999999999996 466777888999999999999999999999999999999964 578888999 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
...|.++ |+|+|++|++++.|+.|++||. +++++..+.+|.+ .|++++|+||+++|++++.|+.|++||
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~-~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999 8999999999999999999995 6888889999976 899999999999999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-29 Score=193.13 Aligned_cols=154 Identities=16% Similarity=0.206 Sum_probs=130.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc--eeee--------------------------------------------ec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTR--------------------------------------------SE 34 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~--~~~~--------------------------------------------~~ 34 (188)
++|+|+|++||+|+.|++|+|||+.+++ .... +.
T Consensus 65 ~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~ 144 (611)
T 1nr0_A 65 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 144 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC
T ss_pred EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceec
Confidence 4799999999999999999999986432 1111 23
Q ss_pred ccccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC
Q 029743 35 FSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (188)
Q Consensus 35 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~ 112 (188)
+|...|.+++|+|++. .|++++.|++|++||... .++...+.+ |...|.++ |+|+|++|++++.|+.|++||+.++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-~~~~~~l~~-H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-CeEeeeecc-ccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 5666777777777765 588999999999999875 566778888 99999999 8999999999999999999999999
Q ss_pred eeeeecc-------cCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 113 RIIQPIA-------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 113 ~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+++..+. +|.+ .|.+++|+|++++|++++.|++|++||+++...
T Consensus 223 ~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp CEEEECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred cEeeeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 8887774 6766 899999999999999999999999999987653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-29 Score=178.77 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=123.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCC--ceeeee-cc-cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc------cc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRS-EF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------KD 71 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------~~ 71 (188)
+|+|+ +|++|+.|++|++|++..+ .....+ .+ |...|.+++|+|++++|++++.|+.|++|++... ..
T Consensus 21 ~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~ 98 (330)
T 2hes_X 21 DFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD 98 (330)
T ss_dssp EEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCE
T ss_pred ccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccce
Confidence 56666 9999999999999999875 344455 34 9999999999999999999999999999998531 23
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc----CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCc
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP----NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 146 (188)
.+..+.+ |...|.++ |+|++++|++++.|+.|++||++. .+++..+.+|.. .|.+++|+|++.+|++++.|+.
T Consensus 99 ~~~~~~~-h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~ 176 (330)
T 2hes_X 99 LLAIIEG-HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ-DVKHVIWHPSEALLASSSYDDT 176 (330)
T ss_dssp EEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS-CEEEEEECSSSSEEEEEETTSC
T ss_pred eEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC-ceEEEEECCCCCEEEEEcCCCe
Confidence 4566788 99999999 899999999999999999999943 246677888866 8999999999999999999999
Q ss_pred EEEEeCCCc
Q 029743 147 LKLWDLDDI 155 (188)
Q Consensus 147 i~iwd~~~~ 155 (188)
|++||+.+.
T Consensus 177 i~iW~~~~~ 185 (330)
T 2hes_X 177 VRIWKDYDD 185 (330)
T ss_dssp EEEEEEETT
T ss_pred EEEEECCCC
Confidence 999998654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=174.90 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=130.6
Q ss_pred Ceeec--ccCeEEEEeCCCcEEEEEcCCCc--eeeeecccccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCccc-cc
Q 029743 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKD-CS 73 (188)
Q Consensus 1 l~~s~--~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~-~~ 73 (188)
++|+| ++++|++++.|++|++||+.+++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++.... ..
T Consensus 59 v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 59 VDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp EEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred EEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee
Confidence 36775 48999999999999999998764 45566789999999999997 89999999999999999976422 24
Q ss_pred ceeeeccCCceeEE-eecC-------------CCEEEEecCCCeEEEEecccCe----eeeecccCCCcceeEEEeeCCC
Q 029743 74 DRFVGLSPNSVDAL-LKLD-------------EDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~-------------~~~l~~~~~d~~v~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~ 135 (188)
..+.+ |...+.++ |+|+ +++|++|+.|+.|++||++++. ....+.+|.. .|.+++|+|++
T Consensus 139 ~~~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~ 216 (297)
T 2pm7_B 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 216 (297)
T ss_dssp EEEEC-CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred eeeec-ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCC
Confidence 55677 88999999 8886 5799999999999999998765 5667888976 89999999984
Q ss_pred ---CEEEEEeCCCcEEEEeCCCc
Q 029743 136 ---KFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 136 ---~~l~~~~~d~~i~iwd~~~~ 155 (188)
.+|++++.|++|++||+++.
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESST
T ss_pred CCceEEEEEECCCcEEEEEeCCC
Confidence 88999999999999999764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=179.91 Aligned_cols=156 Identities=18% Similarity=0.220 Sum_probs=136.4
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCCceeeee-----cccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccccc
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRS-----EFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~ 73 (188)
+.|+|+ +..|++|+.|++|++||+.+++.+..+ .+|...|.+++|++ ++++|++++.|+.|++||++.....+
T Consensus 163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~ 242 (380)
T 3iz6_a 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242 (380)
T ss_dssp CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC
T ss_pred EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce
Confidence 356775 457999999999999999999887766 57889999999987 88999999999999999998656778
Q ss_pred ceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCC------cceeEEEeeCCCCEEEEEeCCCc
Q 029743 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE------YPIESLALSHDRKFLGSISHDSM 146 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~ 146 (188)
..+.+ |...|.++ |+|++++|++++.|+.|++||++++.++..+..+.. ..|.+++|+|++++|++++.|+.
T Consensus 243 ~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 243 RTYHG-HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp EEECC-CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred EEECC-cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence 88899 99999999 899999999999999999999999998877755422 13889999999999999999999
Q ss_pred EEEEeCCCccC
Q 029743 147 LKLWDLDDILK 157 (188)
Q Consensus 147 i~iwd~~~~~~ 157 (188)
|++||+.....
T Consensus 322 i~vwd~~~~~~ 332 (380)
T 3iz6_a 322 CYVWDTLLAEM 332 (380)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCce
Confidence 99999876543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=184.65 Aligned_cols=153 Identities=13% Similarity=0.097 Sum_probs=129.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC--ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc--ccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~ 76 (188)
++|+|++++|++++.|+.|++|++.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.... .....+
T Consensus 17 ~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~ 96 (377)
T 3dwl_C 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96 (377)
T ss_dssp CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC
T ss_pred EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence 589999999999999999999999988 7778888999999999999999999999999999999997632 245556
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe---eeeeccc-CCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAE-HSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.. |...+.++ |+|++++|++++.|+.|++||+++++ ....+.. |.. .|.+++|+|++++|++++.|+.|++||
T Consensus 97 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd 174 (377)
T 3dwl_C 97 LR-LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS-TILSLDWHPNNVLLAAGCADRKAYVLS 174 (377)
T ss_dssp CC-CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS-CEEEEEECTTSSEEEEEESSSCEEEEE
T ss_pred cc-cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC-CeEEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 67 88999999 89999999999999999999999877 3667776 755 899999999999999999999999999
Q ss_pred CCCc
Q 029743 152 LDDI 155 (188)
Q Consensus 152 ~~~~ 155 (188)
++..
T Consensus 175 ~~~~ 178 (377)
T 3dwl_C 175 AYVR 178 (377)
T ss_dssp ECCS
T ss_pred EEec
Confidence 9643
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=181.39 Aligned_cols=153 Identities=18% Similarity=0.305 Sum_probs=133.9
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeee-------cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc---
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--- 69 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--- 69 (188)
++|+| ++++|++++.|+.|++||+.++..+..+ .+|...|.+++|+|++++|++++.|+.|++||++..
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~ 291 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 36788 8999999999999999999998877665 478899999999999999999999999999998642
Q ss_pred --------ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC------C
Q 029743 70 --------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH------D 134 (188)
Q Consensus 70 --------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~------~ 134 (188)
+.+...+.+ |...+.++ ++|++++|++++.|+.|++||+++++++..+.+|.. .|.+++|++ +
T Consensus 292 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~p~ 369 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPE 369 (393)
T ss_dssp ---------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTT
T ss_pred ccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-CEEEEEecCCcCcCCC
Confidence 123445677 88899999 899999999999999999999999999999999976 899999886 6
Q ss_pred CCEEEEEeCCCcEEEEeCCCc
Q 029743 135 RKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~ 155 (188)
+++|++++.|+.|++|++++.
T Consensus 370 ~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 370 YNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CEEEEEEETTSEEEEEEEEEC
T ss_pred CCEEEEECCCCcEEECccccc
Confidence 889999999999999998754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=175.68 Aligned_cols=152 Identities=20% Similarity=0.273 Sum_probs=134.6
Q ss_pred Ceeeccc-CeEEEEeCCCcEEEEEcCC-----CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccc
Q 029743 1 MTFAADA-MKLLGTSGDGTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~-~~l~~~~~d~~i~i~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 74 (188)
++|+|++ ++|++|+.|++|++|++.. +.++..+.+|...|.+++|+|++++|++++.|++|++||+.+ ++.+.
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~-~~~~~ 101 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GETYQ 101 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-CCeeE
Confidence 4688854 8999999999999999864 345667889999999999999999999999999999999986 57788
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCC------CCEEEEEeCCCcE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD------RKFLGSISHDSML 147 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i 147 (188)
.+.+ |...+.++ ++|++.++++++.|+.|++||++ +.++..+.+|.. .|.++.|+|. +..|++++.|+.|
T Consensus 102 ~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i 178 (319)
T 3frx_A 102 RFVG-HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMV 178 (319)
T ss_dssp EEEC-CSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSS-CEEEEEECCC------CCEEEEEETTSCE
T ss_pred EEcc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCC-cEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence 8999 99999999 89999999999999999999996 566778888866 8999999985 4489999999999
Q ss_pred EEEeCCCcc
Q 029743 148 KLWDLDDIL 156 (188)
Q Consensus 148 ~iwd~~~~~ 156 (188)
++||+++..
T Consensus 179 ~~wd~~~~~ 187 (319)
T 3frx_A 179 KAWNLNQFQ 187 (319)
T ss_dssp EEEETTTTE
T ss_pred EEEECCcch
Confidence 999998754
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=175.29 Aligned_cols=148 Identities=13% Similarity=0.088 Sum_probs=116.7
Q ss_pred eeec---ccCeEEEEeCCCcEEEEEcCCCceeeeecccc---cceEEEEEEeCCCEE------------EEecCCCeEEE
Q 029743 2 TFAA---DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE---EELTSVVLMKNGRKV------------VCGSQSGTVLL 63 (188)
Q Consensus 2 ~~s~---~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~d~~i~~ 63 (188)
+|+| ++.+|++++.|++|+|||++++++++++.+|. ..+.+++|+|+|.++ ++|+.|++|++
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 5777 67889999999999999999999999998643 367788999999876 56778999999
Q ss_pred EEeCCccccccee-----eeccCCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE
Q 029743 64 YSWGYFKDCSDRF-----VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 64 ~d~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
||..+ +..+..+ .+ |.....+ .+.++.++++++.|++|+|||+++++++.++.+|....+..++|+|||++|
T Consensus 265 Wd~~t-gk~l~v~~~~~p~G-h~~~~ls-g~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 265 INPKT-TLSVGVMLYCLPPG-QAGRFLE-GDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EETTT-TEEEEEEEECCCTT-CCCCEEE-EEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred EECCC-CEEEEEEEeeccCC-CcceeEc-cccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 99976 4544443 24 4433222 234488999999999999999999999999998876334468999999999
Q ss_pred EEEeCCCcEEEEeC
Q 029743 139 GSISHDSMLKLWDL 152 (188)
Q Consensus 139 ~~~~~d~~i~iwd~ 152 (188)
++|+.|++|+|||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999985
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=193.52 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=138.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccc---eee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD---RFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---~~~ 77 (188)
++|+|++++|++|+.|++|++||+.++.....+.+|...|.+++|+|++++|++++.|++|++||+... .... ...
T Consensus 436 v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~ 514 (694)
T 3dm0_A 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGE 514 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999998532 1111 124
Q ss_pred eccCCceeEE-eecCC--CEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 78 GLSPNSVDAL-LKLDE--DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~--~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
+ |...+.++ |+|++ ..+++++.|+.|++||++++++...+.+|.+ .|++++|+|++++|++++.|+.|++||+++
T Consensus 515 ~-h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 515 G-HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp S-CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred C-CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 5 77889999 88876 5899999999999999999999999999976 899999999999999999999999999988
Q ss_pred ccCCC
Q 029743 155 ILKGS 159 (188)
Q Consensus 155 ~~~~~ 159 (188)
.....
T Consensus 593 ~~~~~ 597 (694)
T 3dm0_A 593 GKKLY 597 (694)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 76443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=182.14 Aligned_cols=154 Identities=13% Similarity=0.164 Sum_probs=137.7
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.|+|++++|++++.|+.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||+.. +..+..+.+ |.
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~-h~ 181 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-GSNPRTLIG-HR 181 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCCCEEEEC-CS
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-CcCceEEcC-CC
Confidence 5789999999999999999999999988888889999999999999999999999999999999986 577788888 99
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC---C--------------------cceeEEEeeCCCCE
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---E--------------------YPIESLALSHDRKF 137 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~---~--------------------~~v~~~~~~~~~~~ 137 (188)
..+.++ |+|++++|++++.|+.|++||+++++++..+..+. . ..+.+++|+|++++
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence 999999 89999999999999999999999999888776432 1 14555667899999
Q ss_pred EEEEeCCCcEEEEeCCCccC
Q 029743 138 LGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~ 157 (188)
|++++.|+.|++||+++...
T Consensus 262 l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp EEEEETTSCEEEEETTTCCE
T ss_pred EEEEcCCCeEEEEECCCCce
Confidence 99999999999999987653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=182.24 Aligned_cols=155 Identities=18% Similarity=0.297 Sum_probs=132.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec-
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~- 79 (188)
++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++. +..+..+...
T Consensus 145 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~ 223 (420)
T 3vl1_A 145 LKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNRKE 223 (420)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECBTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEeecCC
Confidence 47999999999999999999999999998889999999999999999999999999999999999986 4555555430
Q ss_pred -cC---------------------CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC
Q 029743 80 -SP---------------------NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 80 -~~---------------------~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 136 (188)
+. ..+.++ |+|+++++++++.||.|++||+++++....+.......|.+++|+|+++
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 303 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNA 303 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCT
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCC
Confidence 22 334444 5789999999999999999999998877766543234899999999998
Q ss_pred -EEEEEeCCCcEEEEeCCCcc
Q 029743 137 -FLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 137 -~l~~~~~d~~i~iwd~~~~~ 156 (188)
+|++++.|+.|++||+++..
T Consensus 304 ~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 304 NYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp TEEEEEETTSEEEEEETTCTT
T ss_pred CEEEEEeCCCeEEEEEcCCCc
Confidence 99999999999999998764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=180.75 Aligned_cols=155 Identities=11% Similarity=0.153 Sum_probs=139.0
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCC-------ceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
++|+| ++++|++|+.|+.|++|++.++ +.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.. +.
T Consensus 87 ~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~ 165 (402)
T 2aq5_A 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GA 165 (402)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-TE
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CC
Confidence 47999 9999999999999999999887 5677788999999999999998 6999999999999999986 56
Q ss_pred cccee--eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-ccCCCcceeEEEeeCCCCEEEEE---eCC
Q 029743 72 CSDRF--VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSI---SHD 144 (188)
Q Consensus 72 ~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~d 144 (188)
.+..+ .. |...+.++ |+|++++|++++.|+.|++||+++++.+..+ ..|.+..+..++|+|++++|+++ +.|
T Consensus 166 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d 244 (402)
T 2aq5_A 166 AVLTLGPDV-HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE 244 (402)
T ss_dssp EEEEECTTT-CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCC
T ss_pred ccEEEecCC-CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCC
Confidence 67777 67 88999999 8999999999999999999999999998888 67765348999999999999998 789
Q ss_pred CcEEEEeCCCccC
Q 029743 145 SMLKLWDLDDILK 157 (188)
Q Consensus 145 ~~i~iwd~~~~~~ 157 (188)
+.|++||+++...
T Consensus 245 ~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 245 RQVALWDTKHLEE 257 (402)
T ss_dssp EEEEEEETTBCSS
T ss_pred ceEEEEcCccccC
Confidence 9999999987654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-28 Score=173.46 Aligned_cols=155 Identities=18% Similarity=0.248 Sum_probs=132.9
Q ss_pred Ceeec--ccCeEEEEeCCCcEEEEEcCCC---------ceeeeecccccceEEEEEEeC--CCEEEEecCCCeEEEEEeC
Q 029743 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKN---------TVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 1 l~~s~--~~~~l~~~~~d~~i~i~~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~ 67 (188)
++|+| ++++|++++.|+.|++||+..+ +.+..+..|...|.+++|+|+ +++|++++.|+.|++||++
T Consensus 63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 46888 6999999999999999999876 456777889999999999999 9999999999999999986
Q ss_pred Cccc-----------------------------------------------------------ccceeeeccCCceeEE-
Q 029743 68 YFKD-----------------------------------------------------------CSDRFVGLSPNSVDAL- 87 (188)
Q Consensus 68 ~~~~-----------------------------------------------------------~~~~~~~~~~~~v~~~- 87 (188)
.... .+..+.+ |...+.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~ 221 (351)
T 3f3f_A 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-HKSLIRSIS 221 (351)
T ss_dssp STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-CCSCEEEEE
T ss_pred ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC-CCcceeEEE
Confidence 4321 0223445 77889999
Q ss_pred eecCC----CEEEEecCCCeEEEEecccC----------------------------------------------eeeee
Q 029743 88 LKLDE----DRVITGSENGLISLVGILPN----------------------------------------------RIIQP 117 (188)
Q Consensus 88 ~~~~~----~~l~~~~~d~~v~~~d~~~~----------------------------------------------~~~~~ 117 (188)
|+|++ ++|++++.||.|++||++.+ +++..
T Consensus 222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE 301 (351)
T ss_dssp ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence 89998 89999999999999999875 56677
Q ss_pred cccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 118 IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 118 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+.+|.. .|++++|+|++++|++++.|+.|++|++.+...
T Consensus 302 ~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 302 HDDHNG-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ECTTSS-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred Eecccc-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 788866 899999999999999999999999999987653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=177.67 Aligned_cols=156 Identities=17% Similarity=0.217 Sum_probs=124.0
Q ss_pred CeeecccCeEEEEeC------CCcEEEEEcCCCceee----eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc
Q 029743 1 MTFAADAMKLLGTSG------DGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~~------d~~i~i~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 70 (188)
++|||||++|++++. |+.|++|+..++.... ....|...|.+++|+|++++ ++++.|++|++||+....
T Consensus 48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~ 126 (357)
T 4g56_B 48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKE 126 (357)
T ss_dssp EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC------
T ss_pred EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccc
Confidence 579999999999997 6789999987765432 33468889999999998765 567789999999997632
Q ss_pred cc-c--ceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCC
Q 029743 71 DC-S--DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDS 145 (188)
Q Consensus 71 ~~-~--~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~ 145 (188)
.. . ....+ |...|.++ |+|++++|++++.|+.|++||+++++++..+.+|.. .|++++|++++. .+++++.|+
T Consensus 127 ~~~~~~~~~~~-h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~~~~~~~s~~~dg 204 (357)
T 4g56_B 127 SLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS-EVNCVAACPGKDTIFLSCGEDG 204 (357)
T ss_dssp --CCCCEEECC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTCSSCEEEEETTS
T ss_pred eeEEEeeccCC-CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCceeeeeccCC
Confidence 21 1 12346 88899999 899999999999999999999999999999999976 899999999875 788999999
Q ss_pred cEEEEeCCCccCCC
Q 029743 146 MLKLWDLDDILKGS 159 (188)
Q Consensus 146 ~i~iwd~~~~~~~~ 159 (188)
.|++||+++.....
T Consensus 205 ~v~~wd~~~~~~~~ 218 (357)
T 4g56_B 205 RILLWDTRKPKPAT 218 (357)
T ss_dssp CEEECCTTSSSCBC
T ss_pred ceEEEECCCCceee
Confidence 99999998876543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=177.17 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=130.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc--eeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcc-cccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~-~~~~~ 75 (188)
++|+|+|++|++|+.|++|++||+.++. .+..+.+|...|.+++|++ ++++|++++.|++|++||++... .....
T Consensus 19 v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 98 (316)
T 3bg1_A 19 AQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE 98 (316)
T ss_dssp EEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred eeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE
Confidence 4799999999999999999999998764 4567889999999999986 48999999999999999997532 34556
Q ss_pred eeeccCCceeEE-eecC--CCEEEEecCCCeEEEEecccCe---eeeecccCCCcceeEEEeeCC---------------
Q 029743 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALSHD--------------- 134 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~--------------- 134 (188)
+.+ |...|.++ |+|+ +.+|++++.|+.|++||++.+. ....+.+|.. .|.+++|+|+
T Consensus 99 ~~~-h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 99 HAG-HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-GCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp ECC-CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS-CBCCCEECCCCCC------CCSCCC
T ss_pred ccC-CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC-CcceEEEccccCCccccccccccCc
Confidence 778 89999999 8987 7899999999999999998753 2455677765 7999999997
Q ss_pred --CCEEEEEeCCCcEEEEeCCCc
Q 029743 135 --RKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 135 --~~~l~~~~~d~~i~iwd~~~~ 155 (188)
+++|++++.|+.|++||++..
T Consensus 177 ~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 177 NYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp CCCCBEECCBTTSBCCEEEECTT
T ss_pred cccceEEEecCCCeEEEEEeCCC
Confidence 468999999999999999743
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-28 Score=172.95 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=132.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC----ceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcc----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK---- 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~---- 70 (188)
++|+|++++|++++.|+.|++|++..+ +....+.+|...|.+++|+| ++++|++++.|+.|++||++...
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~ 96 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS 96 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc
Confidence 579999999999999999999999875 45666778999999999999 69999999999999999997632
Q ss_pred ----cccceeeeccCCceeEE-eecC--CCEEEEecCCCeEEEEecccCee-----------------------------
Q 029743 71 ----DCSDRFVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRI----------------------------- 114 (188)
Q Consensus 71 ----~~~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~v~~~d~~~~~~----------------------------- 114 (188)
..+..+.. |...+.++ |+|+ +.++++++.|+.|++||+++++.
T Consensus 97 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 97 GRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp SCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred ccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 34566777 88999999 8998 99999999999999999865431
Q ss_pred -------------------------------eeecccCCCcceeEEEeeCCC----CEEEEEeCCCcEEEEeCCCcc
Q 029743 115 -------------------------------IQPIAEHSEYPIESLALSHDR----KFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 115 -------------------------------~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+..+.+|.. .|.+++|+|++ ++|++++.|+.|++||++...
T Consensus 176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251 (351)
T ss_dssp CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC
T ss_pred ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc
Confidence 334556755 89999999998 899999999999999998754
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=186.07 Aligned_cols=148 Identities=20% Similarity=0.341 Sum_probs=135.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.|+.|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||.. +..+..+.+ |
T Consensus 391 ~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~-~ 466 (577)
T 2ymu_A 391 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTLTG-H 466 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcC-C
Confidence 479999999999999999999995 567778888999999999999999999999999999999974 467788888 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
...+.++ |+|++++|++++.|+.|++||. +++++..+.+|.. .|++++|+|++++|++++.|+.|++||...
T Consensus 467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC-CEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 9999999 8999999999999999999995 6888889999976 899999999999999999999999999754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-29 Score=180.93 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=126.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc---eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc--ccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~ 75 (188)
++|+|++++|++++.|+.|++||+.++. ....+..|...|.+++|+|++++|++++.|+.|++||++.... ....
T Consensus 61 ~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 140 (377)
T 3dwl_C 61 VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH 140 (377)
T ss_dssp EEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence 4799999999999999999999999876 5566778999999999999999999999999999999986322 3444
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecc------------------cCeeeeecccCCCcceeEEEeeCCCC
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL------------------PNRIIQPIAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~ 136 (188)
+...|...+.++ |+|++++|++++.|+.|++||++ .++++..+ .|.. .|.+++|+|+++
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~ 218 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGN 218 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSS
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCC
Confidence 443267889999 89999999999999999999985 35566667 7755 899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCccC
Q 029743 137 FLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+|++++.|+.|++||+++...
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTS
T ss_pred EEEEEeCCCcEEEEECCCCCC
Confidence 999999999999999998765
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=172.40 Aligned_cols=148 Identities=19% Similarity=0.257 Sum_probs=127.7
Q ss_pred ec-ccCeEEEEeCCCcEEEEEcCCC-------ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce
Q 029743 4 AA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 4 s~-~~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++ ++++|++|+.|++|++|++..+ .+...+.+|...|.+++|+|++.++++++.|++|++||++. +..+..
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~-~~~~~~ 113 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-GTTYKR 113 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS-SCEEEE
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEE
Confidence 55 8999999999999999998743 34567789999999999999999999999999999999986 577788
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeee--cccCCCcceeEEEeeCCC----------CEEEEEe
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP--IAEHSEYPIESLALSHDR----------KFLGSIS 142 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~----------~~l~~~~ 142 (188)
+.+ |...+.++ |+|++++|++++.|+.|++||+........ ...|.. .|.+++|+|++ .+|++++
T Consensus 114 ~~~-h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~l~s~~ 191 (343)
T 2xzm_R 114 FVG-HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSD-WVSCVRYSPIMKSANKVQPFAPYFASVG 191 (343)
T ss_dssp EEC-CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSS-CEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred EcC-CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCc-eeeeeeeccccccccccCCCCCEEEEEc
Confidence 899 99999999 899999999999999999999974333221 225655 79999999987 7899999
Q ss_pred CCCcEEEEeCCC
Q 029743 143 HDSMLKLWDLDD 154 (188)
Q Consensus 143 ~d~~i~iwd~~~ 154 (188)
.|+.|++||...
T Consensus 192 ~d~~i~iwd~~~ 203 (343)
T 2xzm_R 192 WDGRLKVWNTNF 203 (343)
T ss_dssp TTSEEEEEETTT
T ss_pred CCCEEEEEcCCC
Confidence 999999999543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=180.55 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=127.4
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCce--eeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
|+|+| ++++||+|+.||.|+|||+..++. ...+.+|...|++++|+| ++++|++++.|++|++||++. .....+
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~--~~~~~~ 202 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG--NILRVF 202 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS--CEEEEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC--CceeEE
Confidence 57999 577999999999999999987654 344568999999999998 689999999999999999974 333333
Q ss_pred eec--cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCCcEEEEeC
Q 029743 77 VGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDL 152 (188)
Q Consensus 77 ~~~--~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~ 152 (188)
... +...+.++ ++|++++|++|+.||.|++||++ ++.+..+.+|.. .|.+++|+|+++ +|++++.|+.|++||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~ 280 (435)
T 4e54_B 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDL 280 (435)
T ss_dssp ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEET
T ss_pred eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccc-eEEeeeecCCCceEEEEecCcceeeEEec
Confidence 320 23346677 89999999999999999999986 566778888876 899999999886 6778999999999999
Q ss_pred CCccCCC
Q 029743 153 DDILKGS 159 (188)
Q Consensus 153 ~~~~~~~ 159 (188)
++.....
T Consensus 281 ~~~~~~~ 287 (435)
T 4e54_B 281 RQVRGKA 287 (435)
T ss_dssp TTCCSSS
T ss_pred ccccccc
Confidence 8765443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=189.01 Aligned_cols=154 Identities=16% Similarity=0.246 Sum_probs=142.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.+|.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+.+ +..+..+.+ |
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~-~ 96 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-H 96 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEec-C
Confidence 57999999999999999999999999999999999999999999999999999999999999999986 577788888 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccC-eeeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
...+.++ |+|+++++++++.||.|++|+++++ .....+.+|.. .|.+++|+| ++..|++++.|+.|++||+.+...
T Consensus 97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 175 (814)
T 3mkq_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC
T ss_pred CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC-cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 9999999 8999999999999999999999987 67777888866 899999999 888999999999999999976554
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=173.56 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=128.8
Q ss_pred Ceeec--ccCeEEEEeCCCcEEEEEcCCC--ceeeeecccccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCccc--c
Q 029743 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKD--C 72 (188)
Q Consensus 1 l~~s~--~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~--~ 72 (188)
++|+| ++++|++++.|++|++||++++ .....+.+|...|.+++|+|+ +.+|++++.|+.|++||++.... .
T Consensus 63 v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 63 VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp EEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred EEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 36765 4899999999999999999876 355667789999999999997 78999999999999999975322 2
Q ss_pred cceeeeccCCceeEE-eecC-----------------CCEEEEecCCCeEEEEecccC---eeeeecccCCCcceeEEEe
Q 029743 73 SDRFVGLSPNSVDAL-LKLD-----------------EDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLAL 131 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~-----------------~~~l~~~~~d~~v~~~d~~~~---~~~~~~~~~~~~~v~~~~~ 131 (188)
...+.+ |...+.++ |+|+ +++|++|+.|+.|++||++.. .++..+.+|.. .|.+++|
T Consensus 143 ~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~ 220 (316)
T 3bg1_A 143 KKINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAW 220 (316)
T ss_dssp CCBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS-CEEEEEC
T ss_pred eeeecc-ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC-ceEEEEe
Confidence 344566 78888888 7876 478999999999999999754 46778888976 8999999
Q ss_pred eCCC----CEEEEEeCCCcEEEEeCCC
Q 029743 132 SHDR----KFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 132 ~~~~----~~l~~~~~d~~i~iwd~~~ 154 (188)
+|++ .+|++++.|++|++|++++
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 9986 7899999999999999976
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=185.48 Aligned_cols=151 Identities=11% Similarity=0.056 Sum_probs=130.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc-eeeeecccccceEEE--EEEeCC-CEEEEecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSV--VLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
++|+|+ ..|++|+.||+|++||+.++. +...+.+|...|.++ +|+|++ ++|++++.|++|++||++. +.+...+
T Consensus 272 v~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~~ 349 (524)
T 2j04_B 272 FDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKTT 349 (524)
T ss_dssp EEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCEE
T ss_pred EEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCccccc
Confidence 467775 489999999999999998763 445678999999999 567887 8999999999999999986 4666667
Q ss_pred eeccCC--ceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 77 VGLSPN--SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 77 ~~~~~~--~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.+ |.. .+.++ |+|+++.+++++.|+.|++||++++.++..+.+|.+ .|++++|+|++++|++|+.|++|++||+.
T Consensus 350 ~~-~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 350 VS-RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EE-ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred cc-ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 66 543 46777 899999999999999999999999988888888976 89999999999999999999999999987
Q ss_pred Cc
Q 029743 154 DI 155 (188)
Q Consensus 154 ~~ 155 (188)
..
T Consensus 428 ~~ 429 (524)
T 2j04_B 428 RR 429 (524)
T ss_dssp SS
T ss_pred Hh
Confidence 54
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=175.25 Aligned_cols=157 Identities=10% Similarity=0.176 Sum_probs=141.3
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCCceeeeeccc------ccceEEEEEEeCC-CEEEEecCCC---eEEEEEeCCc
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFS------EEELTSVVLMKNG-RKVVCGSQSG---TVLLYSWGYF 69 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~---~i~~~d~~~~ 69 (188)
++|+|+ +++|++++.|+.|++||+.+++.+..+..+ ...+.+++|+|++ .++++++.++ .|++||++..
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 478998 789999999999999999999888887765 7889999999987 6899999998 9999999875
Q ss_pred ccccceee-eccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC-CEEEEEeCCC
Q 029743 70 KDCSDRFV-GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDS 145 (188)
Q Consensus 70 ~~~~~~~~-~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~ 145 (188)
...+..+. + |...+.++ |+| ++++|++++.|+.|++||+++++++..+..|.. .|.+++|+|++ .+|++++.|+
T Consensus 251 ~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 251 NTPLQTLNQG-HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp TSCSBCCCSC-CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSS
T ss_pred CCCcEEeecC-ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCC
Confidence 56777787 8 89999999 899 999999999999999999999999999999866 89999999999 8999999999
Q ss_pred cEEEEeCCCccCCC
Q 029743 146 MLKLWDLDDILKGS 159 (188)
Q Consensus 146 ~i~iwd~~~~~~~~ 159 (188)
.|++|++.+.....
T Consensus 329 ~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 329 KIEVQTLQNLTNTL 342 (416)
T ss_dssp EEEEEESCCCCCSS
T ss_pred cEEEEEccCCCCCc
Confidence 99999999876543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=192.21 Aligned_cols=149 Identities=11% Similarity=0.119 Sum_probs=127.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee--eee----c-----ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRS----E-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~----~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 69 (188)
++|+|++++|++|+.|++|++||+.++... ..+ . +|...|.+++|+|++++|++|+.|++|++|++...
T Consensus 441 v~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 441 KLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred ccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 468999999999999999999999877431 111 1 78889999999999999999999999999999643
Q ss_pred c--------------------------------------------cccceeeeccCCceeEE-eecCCCEEEEecCCCeE
Q 029743 70 K--------------------------------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLI 104 (188)
Q Consensus 70 ~--------------------------------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v 104 (188)
. +++..+.+ |...|+++ |+|+| +|++|+.|++|
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-h~~~V~svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA-NKGKTSAINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC-CSCSEEEEEECBTS-EEEEEETTSEE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc-CCCcEEEEEecCCc-EEEEEeCCCcE
Confidence 1 13556778 99999999 89999 99999999999
Q ss_pred EEEecccCeeee-----ecc-cCCCcceeEEEee-----CCC---CEEEEEeCCCcEEEEeC
Q 029743 105 SLVGILPNRIIQ-----PIA-EHSEYPIESLALS-----HDR---KFLGSISHDSMLKLWDL 152 (188)
Q Consensus 105 ~~~d~~~~~~~~-----~~~-~~~~~~v~~~~~~-----~~~---~~l~~~~~d~~i~iwd~ 152 (188)
+|||+++...+. .+. +|.. .|++++|+ ||| ++|++++.|++|++||+
T Consensus 599 ~lwd~~~~~~~~~~~~~~~~~gh~~-~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 599 MLIDRRGPAIIYMENIREISGAQSA-CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEETTTTEEEEEEEGGGTCSSCCC-CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEECCCCeEEEEeehhHhcccccc-ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 999998776543 343 7766 79999999 885 89999999999999998
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=195.46 Aligned_cols=153 Identities=17% Similarity=0.249 Sum_probs=143.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+ +..+..+.+ |
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~-~ 698 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-GKLVHTYDE-H 698 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC-CceEEEEcC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999986 578888889 9
Q ss_pred CCceeEE-eec--CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 81 PNSVDAL-LKL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 81 ~~~v~~~-~~~--~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
...+.++ |+| ++.++++++.|+.|++||+++++++..+.+|.. .|.+++|+|++++|++++.|+.|++||+.+..
T Consensus 699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN-SVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS-CEEEEEECSSTTEEEEEESSSEEEEEEGGGTE
T ss_pred CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC-CEEEEEEecCCCEEEEEECCCeEEEEeCCCCc
Confidence 9999999 888 566899999999999999999999999999976 89999999999999999999999999998764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=178.41 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=128.5
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
|+|+| ++++|++++.|++|++||++.+....... .+...+.+++|+|++++|++|+.|+.|++||++ +..+..+.
T Consensus 170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~~~~ 247 (435)
T 4e54_B 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELWNLR 247 (435)
T ss_dssp EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCCCSB
T ss_pred EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeEEEe
Confidence 47998 68999999999999999998765433333 334467899999999999999999999999986 46677788
Q ss_pred eccCCceeEE-eecCCC-EEEEecCCCeEEEEecccCeeeee---cccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 78 GLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQP---IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
+ |...|.++ |+|++. ++++++.|+.|++||+++.+.... ..+|.. .|++++|+|++++|++++.|+.|++||+
T Consensus 248 ~-h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~spdg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 248 M-HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH-PVNAACFSPDGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp C-CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS-CEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred c-ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc-cccceeECCCCCeeEEEcCCCEEEEEEC
Confidence 8 99999999 899876 678899999999999987664433 356755 8999999999999999999999999999
Q ss_pred CCcc
Q 029743 153 DDIL 156 (188)
Q Consensus 153 ~~~~ 156 (188)
.+..
T Consensus 326 ~~~~ 329 (435)
T 4e54_B 326 SQWD 329 (435)
T ss_dssp SSSS
T ss_pred CCCc
Confidence 8754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-27 Score=168.49 Aligned_cols=155 Identities=14% Similarity=0.259 Sum_probs=134.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee---eeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc-ccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ---TRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~ 74 (188)
++|+|++++|++++ |+.|++|++..+... ..+. .|...|.+++|+|++++|++++.|+.|++||+..... ...
T Consensus 57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence 47999999999998 999999999876432 2222 6889999999999999999999999999999976321 445
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.+.. |...+.++ ++|+++++++++.++.|++||+++++.+..+..|.. .|.+++|+|++++|++++.|+.|++||++
T Consensus 136 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 136 ELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eccc-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 5667 88889999 899999999999999999999999999999988866 89999999999999999999999999998
Q ss_pred CccCC
Q 029743 154 DILKG 158 (188)
Q Consensus 154 ~~~~~ 158 (188)
+....
T Consensus 214 ~~~~~ 218 (337)
T 1gxr_A 214 EGRQL 218 (337)
T ss_dssp TTEEE
T ss_pred CCceE
Confidence 76543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=173.33 Aligned_cols=152 Identities=12% Similarity=0.142 Sum_probs=134.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecc---c---ccceEEEEEEeCCCEEEEecCC---CeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---S---EEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~ 71 (188)
++|+|++ +|++++.|+.|++||+.+++.+..+.. | ...|.+++|+|++++|++++.| +.|++||++. +.
T Consensus 192 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~ 269 (397)
T 1sq9_A 192 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GE 269 (397)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CC
T ss_pred EEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-Cc
Confidence 4789999 999999999999999999999888888 8 9999999999999999999999 9999999976 45
Q ss_pred ccceeeec------------cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc------cC-----------
Q 029743 72 CSDRFVGL------------SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA------EH----------- 121 (188)
Q Consensus 72 ~~~~~~~~------------~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~------~~----------- 121 (188)
.+..+... |...+.++ |+|++++|++++.|+.|++||+++++++..+. .|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccc
Confidence 55555431 56788899 89999999999999999999999999998888 66
Q ss_pred ----CCcceeEEEeeCCC----------CEEEEEeCCCcEEEEeCCCc
Q 029743 122 ----SEYPIESLALSHDR----------KFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 122 ----~~~~v~~~~~~~~~----------~~l~~~~~d~~i~iwd~~~~ 155 (188)
.. .|.+++|+|++ ++|++++.|+.|++|+++++
T Consensus 350 ~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 350 DSLAEP-GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCSSC-CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccCC-ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 55 89999999998 79999999999999999765
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-27 Score=171.61 Aligned_cols=151 Identities=15% Similarity=0.228 Sum_probs=132.3
Q ss_pred Ceeeccc-CeEEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
++|+|++ ++|++|+.|+.|++||+.+++....+. +|...|.+++|+| ++++|++++.|+.|++||+.. ..+..+
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~ 156 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--SVIQVF 156 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--CEEEEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--CceEEE
Confidence 4799998 999999999999999999887766655 6999999999999 789999999999999999974 445555
Q ss_pred eec--cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCCcEEEEeC
Q 029743 77 VGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDL 152 (188)
Q Consensus 77 ~~~--~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~ 152 (188)
... +...+.++ |+|+++++++++.|+.|++||+ .++++..+..|.. .|.+++|+|+++ +|++++.|+.|++||+
T Consensus 157 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 234 (383)
T 3ei3_B 157 AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDL 234 (383)
T ss_dssp ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEG
T ss_pred eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeC
Confidence 440 33678999 8999999999999999999999 5778888888866 899999999999 8999999999999999
Q ss_pred CCc
Q 029743 153 DDI 155 (188)
Q Consensus 153 ~~~ 155 (188)
++.
T Consensus 235 ~~~ 237 (383)
T 3ei3_B 235 RNI 237 (383)
T ss_dssp GGC
T ss_pred CCC
Confidence 874
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=172.35 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=134.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcC--CCceeeeecccccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCcc-cccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~-~~~~~ 75 (188)
++|+|++++|++++.|+.|++|++. +++.+..+.+|...|.+++|+++ +++|++++.|+.|++||+.... ..+..
T Consensus 17 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 96 (379)
T 3jrp_A 17 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 96 (379)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee
Confidence 4799999999999999999999998 45667788899999999999987 8999999999999999998632 25666
Q ss_pred eeeccCCceeEE-eecC--CCEEEEecCCCeEEEEecccCe--eeeecccCCCcceeEEEeeC-------------CCCE
Q 029743 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSH-------------DRKF 137 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~-------------~~~~ 137 (188)
+.. |...+.++ |+|+ +.++++++.|+.|++||++++. ....+..|.. .|.+++|+| ++.+
T Consensus 97 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T 3jrp_A 97 HAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 174 (379)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT-CEEEEEECCCC----------CTTCE
T ss_pred ecC-CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC-ceEEEEEcCccccccccccCCCCCCE
Confidence 777 88999999 8998 9999999999999999998773 3445567755 899999999 6999
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 029743 138 LGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (188)
|++++.|+.|++||+++..
T Consensus 175 l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 175 FVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp EEEEETTSCEEEEEEETTT
T ss_pred EEEEeCCCeEEEEEecCCC
Confidence 9999999999999997653
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=168.55 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=133.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee---
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV--- 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--- 77 (188)
++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... ..+..+.
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~ 116 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG-QCVATWKSPV 116 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-CEEEEEECSS
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCC
Confidence 579999999999999999999999999999999999999999999999999999999999999998752 2222111
Q ss_pred ------------------------------------------------------eccCC--ceeEE-eecCCCEEEEecC
Q 029743 78 ------------------------------------------------------GLSPN--SVDAL-LKLDEDRVITGSE 100 (188)
Q Consensus 78 ------------------------------------------------------~~~~~--~v~~~-~~~~~~~l~~~~~ 100 (188)
. +.. .+.++ ++|+++++++++.
T Consensus 117 ~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 195 (369)
T 3zwl_B 117 PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT-HEGLDAATVAGWSTKGKYIIAGHK 195 (369)
T ss_dssp CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC-CTTCCCEEEEEECGGGCEEEEEET
T ss_pred CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC-CcCccceeEEEEcCCCCEEEEEcC
Confidence 1 111 56666 7888899999999
Q ss_pred CCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 101 NGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 101 d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
+|.|++||+++ +..+..+..|.. .|.+++|+|++++|++++.|+.|++||+++....
T Consensus 196 dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 196 DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 99999999998 788888888866 8999999999999999999999999999886543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=174.07 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=138.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.|+.|++||+..++.+..+..|...|.+++|+|++ .+++++.|+.|++||++. +..+..+.. |
T Consensus 253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~-~ 329 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIV-D 329 (425)
T ss_dssp EEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEEC-T
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEeEeccc-C
Confidence 4789999999999999999999999998888888899999999999999 999999999999999976 567777888 8
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCe--------------------eeeecccCCCc-ceeEEEeeCCCCEE
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--------------------IIQPIAEHSEY-PIESLALSHDRKFL 138 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~--------------------~~~~~~~~~~~-~v~~~~~~~~~~~l 138 (188)
...+.++ |+|++++|++++.+|.|++||++++. ++..+..|... .|.+++|+|++++|
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 409 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKI 409 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEE
T ss_pred CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceE
Confidence 8999999 89999999999999999999999888 78888888543 79999999999999
Q ss_pred EEEeCCCcEEEEeCC
Q 029743 139 GSISHDSMLKLWDLD 153 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~ 153 (188)
++++.|+.|++|+++
T Consensus 410 ~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 410 SVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEESSSCCEEEECC
T ss_pred EEEecCceEEEEeec
Confidence 999999999999986
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=166.79 Aligned_cols=153 Identities=14% Similarity=0.195 Sum_probs=137.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc--eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+|++++|++++.|+.|++|++.+++ ....+..|...+.+++|+|+++++++++.++.|++||++. +..+..+..
T Consensus 103 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~ 181 (337)
T 1gxr_A 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQG 181 (337)
T ss_dssp EEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC
T ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceeeeeec
Confidence 4789999999999999999999999876 5566778999999999999999999999999999999986 567777888
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|...+.++ ++|+++++++++.++.|++||+++++.+..+... . .+.+++|+|++++|++++.++.|++||+++...
T Consensus 182 -~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 182 -HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-S-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-S-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred -ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC-C-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence 89999999 8999999999999999999999999888777543 4 799999999999999999999999999987654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=175.94 Aligned_cols=155 Identities=15% Similarity=0.210 Sum_probs=135.8
Q ss_pred CeeecccCeE-EEEeCCCcEEEEEcC--CCceeeeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc---c
Q 029743 1 MTFAADAMKL-LGTSGDGTLSVCNLR--KNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---C 72 (188)
Q Consensus 1 l~~s~~~~~l-~~~~~d~~i~i~~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~ 72 (188)
++|+|++++| ++++.|+.|++|++. +++.+..+. .|...|.+++|+|++++|++++.++.+++|++..... .
T Consensus 108 ~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~ 187 (450)
T 2vdu_B 108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT 187 (450)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC
T ss_pred EEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc
Confidence 4799999996 888899999999999 787777776 5678899999999999999999999999999975321 2
Q ss_pred cceeeeccCCceeEE-eecC---CCEEEEecCCCeEEEEecccCeeeee-cccCCCcceeEEEeeCCCCEEEEEeCCCcE
Q 029743 73 SDRFVGLSPNSVDAL-LKLD---EDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSML 147 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~---~~~l~~~~~d~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 147 (188)
...+.+ |...+.++ |+|+ +++|++++.|+.|++||+++++.+.. +.+|.. .|.+++|+ ++++|++++.|+.|
T Consensus 188 ~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v 264 (450)
T 2vdu_B 188 QEPILG-HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH-FVSSICCG-KDYLLLSAGGDDKI 264 (450)
T ss_dssp CCCSEE-CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS-CEEEEEEC-STTEEEEEESSSEE
T ss_pred ceeeec-ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC-ceEEEEEC-CCCEEEEEeCCCeE
Confidence 336778 99999999 8999 99999999999999999999888777 557765 89999999 99999999999999
Q ss_pred EEEeCCCccCC
Q 029743 148 KLWDLDDILKG 158 (188)
Q Consensus 148 ~iwd~~~~~~~ 158 (188)
++||+++....
T Consensus 265 ~vwd~~~~~~~ 275 (450)
T 2vdu_B 265 FAWDWKTGKNL 275 (450)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcEe
Confidence 99999987643
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=174.90 Aligned_cols=154 Identities=12% Similarity=0.159 Sum_probs=128.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc-----------eeeeecccc------------cceEEEEEEeCC--CEEEEe
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----------VQTRSEFSE------------EELTSVVLMKNG--RKVVCG 55 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 55 (188)
++|+|+|++|++|+.|+.|+||++.+++ ....+.+|. ..|.+++|+|++ ..|+++
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~ 113 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLS 113 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEe
Confidence 5799999999999999999999998776 467788898 889999999998 799999
Q ss_pred cCCCeEEEEEeCCcccc--------------------------------------cce-eeeccCCceeEE-eecCCCEE
Q 029743 56 SQSGTVLLYSWGYFKDC--------------------------------------SDR-FVGLSPNSVDAL-LKLDEDRV 95 (188)
Q Consensus 56 ~~d~~i~~~d~~~~~~~--------------------------------------~~~-~~~~~~~~v~~~-~~~~~~~l 95 (188)
+.|+.|++|++...... ... ..+ |...|.++ |+|++++|
T Consensus 114 s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l 192 (447)
T 3dw8_B 114 TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA-HTYHINSISINSDYETY 192 (447)
T ss_dssp ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC-CSSCCCEEEECTTSSEE
T ss_pred CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC-CCcceEEEEEcCCCCEE
Confidence 99999999998642110 112 356 88899999 89999999
Q ss_pred EEecCCCeEEEEeccc-Ceeee-------ecccCCCcceeEEEeeCCC-CEEEEEeCCCcEEEEeCCCccC
Q 029743 96 ITGSENGLISLVGILP-NRIIQ-------PIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 96 ~~~~~d~~v~~~d~~~-~~~~~-------~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+++ .|+.|++||+++ +..+. .+.+|.. .|.+++|+|++ .+|++++.|+.|++||+++...
T Consensus 193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE-VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC-CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEe-CCCeEEEEECCCCCceeeeeecccccccccCc-ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 999 799999999984 44443 3567765 89999999998 8999999999999999998764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=171.36 Aligned_cols=155 Identities=13% Similarity=0.173 Sum_probs=138.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++| +++.|++++.|+.|++||++........+.+ |
T Consensus 140 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~ 216 (401)
T 4aez_A 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-H 216 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-C
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC-C
Confidence 479999999999999999999999999999999999999999999 5679999999999999999865677788888 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE-EEEEe--CCCcEEEEeCCCcc
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSIS--HDSMLKLWDLDDIL 156 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~d~~i~iwd~~~~~ 156 (188)
...+.++ |+|+++++++++.|+.|++||+++++++..+..|.. .|.+++|+|++.. +++++ .|+.|++||+.+..
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 9999999 899999999999999999999999999988888866 8999999997754 45544 69999999998776
Q ss_pred CCC
Q 029743 157 KGS 159 (188)
Q Consensus 157 ~~~ 159 (188)
...
T Consensus 296 ~~~ 298 (401)
T 4aez_A 296 RVN 298 (401)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=163.98 Aligned_cols=153 Identities=14% Similarity=0.214 Sum_probs=122.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeee-----------------------------------------cccccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-----------------------------------------EFSEEE 39 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-----------------------------------------~~~~~~ 39 (188)
++|+|++++|++|+.|++|++|++++++.+..+ .+|...
T Consensus 73 v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (318)
T 4ggc_A 73 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 152 (318)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred EEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCc
Confidence 479999999999999999999999887654433 345566
Q ss_pred eEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc---ccee----------------------------------------
Q 029743 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC---SDRF---------------------------------------- 76 (188)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~---------------------------------------- 76 (188)
+..+.+.+++++|++++.|+.|++||+...... ....
T Consensus 153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~ 232 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 232 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC
T ss_pred eEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc
Confidence 778888888999999999999999998642110 0000
Q ss_pred ----eeccCCceeEE-eecCCCEEEEe--cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 77 ----VGLSPNSVDAL-LKLDEDRVITG--SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 77 ----~~~~~~~v~~~-~~~~~~~l~~~--~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
.. +...+..+ ++|++..++++ +.|+.|++||+++++++..+.+|.+ .|++++|+|++++|++++.|++|+|
T Consensus 233 ~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~-~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 233 CLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp EEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEE
T ss_pred cccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEE
Confidence 01 22334555 67888777654 4789999999999999999999976 8999999999999999999999999
Q ss_pred EeCCCc
Q 029743 150 WDLDDI 155 (188)
Q Consensus 150 wd~~~~ 155 (188)
||+...
T Consensus 311 Wd~~~~ 316 (318)
T 4ggc_A 311 WRCFEL 316 (318)
T ss_dssp ECCSCC
T ss_pred EECCCC
Confidence 999764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=169.14 Aligned_cols=151 Identities=10% Similarity=0.073 Sum_probs=131.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc--eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc--ccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--SDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~ 76 (188)
++|+|++++|++++.++.|++|++.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+... .. ...+
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~ 92 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-TWKPTLVI 92 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-EEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC-eeeeeEEe
Confidence 4799999999999999999999999887 77888899999999999999999999999999999999753 32 2233
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee---eee-cccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI---IQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~---~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.. |...+.++ |+|+++++++++.++.|++||++.+.. ... ...|.. .|.+++|+|++++|++++.|+.|++||
T Consensus 93 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 93 LR-INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFS 170 (372)
T ss_dssp CC-CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ec-CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC-CeeEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 55 78889999 899999999999999999999988762 223 355555 899999999999999999999999999
Q ss_pred CCC
Q 029743 152 LDD 154 (188)
Q Consensus 152 ~~~ 154 (188)
++.
T Consensus 171 ~~~ 173 (372)
T 1k8k_C 171 AYI 173 (372)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=169.04 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=132.4
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeeec---ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
++|+| ++++|++++.|+.|++||+.. ..+..+. .|...|.+++|+|++++|++++.|+.|++||++ +..+..+
T Consensus 124 ~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~ 200 (383)
T 3ei3_B 124 MKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKE 200 (383)
T ss_dssp EEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEE
T ss_pred EEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEe
Confidence 47899 789999999999999999986 4444444 344789999999999999999999999999994 5777888
Q ss_pred eeccCCceeEE-eecCCC-EEEEecCCCeEEEEeccc----CeeeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEE
Q 029743 77 VGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP----NRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKL 149 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i 149 (188)
.. |...+.++ |+|+++ ++++++.|+.|++||+++ +.++..+ .|.. .|.+++|+| ++++|++++.|+.|++
T Consensus 201 ~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 201 KL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK-PVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp EC-SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS-CEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred cc-CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC-ceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 88 99999999 899999 999999999999999998 5566656 5655 899999999 9999999999999999
Q ss_pred EeCCCccCC
Q 029743 150 WDLDDILKG 158 (188)
Q Consensus 150 wd~~~~~~~ 158 (188)
||+++....
T Consensus 278 wd~~~~~~~ 286 (383)
T 3ei3_B 278 YSSYDWSKP 286 (383)
T ss_dssp EETTBTTSC
T ss_pred EECCCCccc
Confidence 999886653
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=168.10 Aligned_cols=157 Identities=10% Similarity=0.161 Sum_probs=140.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC-CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
++|+|++++|++++.++.|++||+.+ +..+..+..|...|.+++|+|++++|++++.|+.|++||++. +..+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-- 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYE-- 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE--
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-Cceeeeec--
Confidence 46899999999999999999999998 788888889999999999999999999999999999999986 45555555
Q ss_pred cCCceeEE-eecCCCEEEEecCCC--------------eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENG--------------LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~--------------~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
+...+.++ ++|+++++++++.++ .+++||+.+++++..+.+|.. .|.+++|+|++++|++++.|
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-PLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETT
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC-cEEEEEECCCCCEEEEEcCC
Confidence 56678888 899999999999888 899999999999999999966 89999999999999999999
Q ss_pred CcEEEEeCCCccCCCCC
Q 029743 145 SMLKLWDLDDILKGSGN 161 (188)
Q Consensus 145 ~~i~iwd~~~~~~~~~~ 161 (188)
+.|++|++++.......
T Consensus 337 g~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 337 GFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp SEEEEEEECHHHHTCCC
T ss_pred CeEEEEECccccchhHH
Confidence 99999999987654443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=168.32 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=129.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe---CCCEEEEecCCCeEEEEEeCCcccccceee-
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~- 77 (188)
+|+|++++|++++.|+.|++||+++++.... ..|...|.+++|+| +++.|++++.|+.|++||++. +.....+.
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~ 252 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFAS 252 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEE
T ss_pred ccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceee
Confidence 4789999999999999999999999887544 56889999999999 899999999999999999976 45555554
Q ss_pred ----eccCCceeEE-eecCCC-EEEEecCCCeEEEEecccC-------------------eeeeecccCCCcceeEEEee
Q 029743 78 ----GLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPN-------------------RIIQPIAEHSEYPIESLALS 132 (188)
Q Consensus 78 ----~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~-------------------~~~~~~~~~~~~~v~~~~~~ 132 (188)
+ |...+.++ |+|+++ ++++++.||.|++||++.+ +++..+.+|.. .|.+++|+
T Consensus 253 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~~~~s 330 (357)
T 3i2n_A 253 VSEKA-HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-PISSLDWS 330 (357)
T ss_dssp EEEEC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-CEEEEEEC
T ss_pred eccCC-CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC-CeeEEEEc
Confidence 7 89999999 899998 8999999999999999854 35667778866 89999999
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCcc
Q 029743 133 HDRKFLG-SISHDSMLKLWDLDDIL 156 (188)
Q Consensus 133 ~~~~~l~-~~~~d~~i~iwd~~~~~ 156 (188)
|++++|+ +++.|+.|++||+.+..
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999998 79999999999998754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=172.27 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=132.8
Q ss_pred eeecccCeEE-EEeCCCcEEEEEcCCC----ceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcc-----
Q 029743 2 TFAADAMKLL-GTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK----- 70 (188)
Q Consensus 2 ~~s~~~~~l~-~~~~d~~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~----- 70 (188)
+++|+...++ +++.+|.|+||++... .....+.+|...|.+++|+| ++++|++++.|+.|++|++...+
T Consensus 41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~ 120 (402)
T 2aq5_A 41 AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120 (402)
T ss_dssp EECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB
T ss_pred EECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc
Confidence 4566654443 4688999999998654 23445678999999999999 89999999999999999997642
Q ss_pred -cccceeeeccCCceeEE-eecCC-CEEEEecCCCeEEEEecccCeeeeec--ccCCCcceeEEEeeCCCCEEEEEeCCC
Q 029743 71 -DCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPI--AEHSEYPIESLALSHDRKFLGSISHDS 145 (188)
Q Consensus 71 -~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~v~~~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~ 145 (188)
..+..+.+ |...+.++ |+|++ .+|++++.|+.|++||+++++.+..+ ..|.. .|.+++|+|++++|++++.|+
T Consensus 121 ~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~ 198 (402)
T 2aq5_A 121 REPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-TIYSVDWSRDGALICTSCRDK 198 (402)
T ss_dssp CSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-CEEEEEECTTSSCEEEEETTS
T ss_pred CCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-ceEEEEECCCCCEEEEEecCC
Confidence 56777888 99999999 89998 69999999999999999999999888 77866 899999999999999999999
Q ss_pred cEEEEeCCCccCC
Q 029743 146 MLKLWDLDDILKG 158 (188)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (188)
.|++||+++....
T Consensus 199 ~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 199 RVRVIEPRKGTVV 211 (402)
T ss_dssp EEEEEETTTTEEE
T ss_pred cEEEEeCCCCcee
Confidence 9999999876543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=178.74 Aligned_cols=155 Identities=12% Similarity=0.025 Sum_probs=129.9
Q ss_pred Ceeecc------cCeEEEEeCCCcEEEEEcCCCce-----------eeeecccccceEEEEEEeCCCEEEEecCCCeEEE
Q 029743 1 MTFAAD------AMKLLGTSGDGTLSVCNLRKNTV-----------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (188)
Q Consensus 1 l~~s~~------~~~l~~~~~d~~i~i~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 63 (188)
|+|+|+ +++||+++.|++|++||+..+.. ...+.+|...|.+++|+++ ..|++|+.||+|++
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~l 291 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAE 291 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEE
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEE
Confidence 467875 67999999999999999986532 2356789999999999985 58999999999999
Q ss_pred EEeCCcccccceeeeccCCceeEE--e-ecCC-CEEEEecCCCeEEEEecccCeeeeecccCCC-cceeEEEeeCCCCEE
Q 029743 64 YSWGYFKDCSDRFVGLSPNSVDAL--L-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFL 138 (188)
Q Consensus 64 ~d~~~~~~~~~~~~~~~~~~v~~~--~-~~~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l 138 (188)
||++....+...+.+ |...|.++ + +|+| .+|++++.|++|+|||++++++...+.+|.. ..|.+++|+|+++.+
T Consensus 292 WD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 292 FDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370 (524)
T ss_dssp EETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred EECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence 999864445566888 99999998 3 6777 8999999999999999999887777766642 247899999999999
Q ss_pred EEEeCCCcEEEEeCCCccC
Q 029743 139 GSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~ 157 (188)
++++.|++|++||+++...
T Consensus 371 ~s~~~d~tv~lwd~~~~~~ 389 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFA 389 (524)
T ss_dssp EEECSSSEEEEEETTCTTC
T ss_pred EEeCCCCcEEEEECccccc
Confidence 9999999999999987654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=173.13 Aligned_cols=156 Identities=12% Similarity=0.216 Sum_probs=135.9
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCC---ceeeeecccccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCcccccce
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++|+| ++.+|++++.|+.|++||++.+ ..+..+..|...|.+++|+|++. .+++++.|+.|++||++..+.++..
T Consensus 237 v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence 46889 6788999999999999999876 56667778999999999999887 6889999999999999876677888
Q ss_pred eeeccCCceeEE-eecCCC-EEEEecCCCeEEEEeccc--------------CeeeeecccCCCcceeEEEeeCCCC-EE
Q 029743 76 FVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP--------------NRIIQPIAEHSEYPIESLALSHDRK-FL 138 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l 138 (188)
+.. |...+.++ |+|+++ ++++++.|+.|++||+.. ...+..+.+|.. .|++++|+|+++ +|
T Consensus 317 ~~~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l 394 (430)
T 2xyi_A 317 FES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWII 394 (430)
T ss_dssp EEC-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEE
T ss_pred eec-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEE
Confidence 888 99999999 899985 689999999999999987 256667777865 799999999999 88
Q ss_pred EEEeCCCcEEEEeCCCccCC
Q 029743 139 GSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~ 158 (188)
++++.|+.|++|++......
T Consensus 395 ~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 395 CSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp EEEETTSEEEEEEECHHHHC
T ss_pred EEEECCCCEEEeEccccccc
Confidence 99999999999999876543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=168.13 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=124.7
Q ss_pred Ceeec--ccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc-cee
Q 029743 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DRF 76 (188)
Q Consensus 1 l~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~ 76 (188)
++|+| +++++++++.|+.|++||+.+++...... .+...+.+++|+|++.+|++|+.|+.|++||++.. ... ..+
T Consensus 131 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~-~~~~~~~ 209 (343)
T 3lrv_A 131 MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP-DQASSRF 209 (343)
T ss_dssp EECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT-TSCCEEC
T ss_pred EEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-CCCccEE
Confidence 46889 99999999999999999999988866654 45568999999999999999999999999999874 443 444
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeeccc---CCCccee--EEEeeCCCCEEEEEeC-CCcEEE
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE---HSEYPIE--SLALSHDRKFLGSISH-DSMLKL 149 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~---~~~~~v~--~~~~~~~~~~l~~~~~-d~~i~i 149 (188)
...|..+|.++ |+|++.+|++++. +.|++||+++++....+.. +.. .+. +++|+|++++|++++. |+.|++
T Consensus 210 ~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~s~~d~~i~v 287 (343)
T 3lrv_A 210 PVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEF-KTGTVTYDIDDSGKNMIAYSNESNSLTI 287 (343)
T ss_dssp CCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccc-cccceEEEECCCCCEEEEecCCCCcEEE
Confidence 43278899999 8999999999994 4999999999877665543 322 344 5999999999999988 999999
Q ss_pred EeCCCcc
Q 029743 150 WDLDDIL 156 (188)
Q Consensus 150 wd~~~~~ 156 (188)
|++.+..
T Consensus 288 ~~~~~~~ 294 (343)
T 3lrv_A 288 YKFDKKT 294 (343)
T ss_dssp EEECTTT
T ss_pred EEEcccc
Confidence 9986553
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=167.79 Aligned_cols=155 Identities=16% Similarity=0.145 Sum_probs=133.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeee--ecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc--cccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~ 76 (188)
++|+|++++|++++.|+.|++||+.+++.... +..|...|.+++|+|++++|++++.|+.|++||++.... ....+
T Consensus 58 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 137 (372)
T 1k8k_C 58 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 137 (372)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred EEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence 47999999999999999999999988865433 357889999999999999999999999999999976321 12223
Q ss_pred -eeccCCceeEE-eecCCCEEEEecCCCeEEEEecc------------------cCeeeeecccCCCcceeEEEeeCCCC
Q 029743 77 -VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL------------------PNRIIQPIAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 77 -~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~ 136 (188)
.. |...+.++ |+|+++++++++.|+.|++||++ .++++..+..|.. .|.+++|+|+++
T Consensus 138 ~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 215 (372)
T 1k8k_C 138 KKP-IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGS 215 (372)
T ss_dssp CTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSS
T ss_pred ecc-cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCC
Confidence 45 78889999 89999999999999999999953 6778888888866 899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCccC
Q 029743 137 FLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+|++++.|+.|++||+++...
T Consensus 216 ~l~~~~~d~~i~i~d~~~~~~ 236 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKKMA 236 (372)
T ss_dssp EEEEEETTTEEEEEEGGGTTE
T ss_pred EEEEEeCCCEEEEEECCCCce
Confidence 999999999999999987654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=165.40 Aligned_cols=150 Identities=16% Similarity=0.205 Sum_probs=125.4
Q ss_pred eeecc--cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+|+++ ..++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++. ...+..+.
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~-- 254 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLD-- 254 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEE--
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-Cceeeeec--
Confidence 45554 45678999999999999999999999999999999999999999999999999999999986 46666665
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc---------cCCCcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA---------EHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
+...+.++ ++|++. +++++.|+.|++||++++..+..+. +|.. .|.+++|+|++++|++++.||.|+|
T Consensus 255 ~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 255 GGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-QCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCC-CEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCC-CEEEEEECCCCCEEEEEeCCCEEEE
Confidence 45678888 788765 5566679999999998877655443 4544 7999999999999999999999999
Q ss_pred EeCCCcc
Q 029743 150 WDLDDIL 156 (188)
Q Consensus 150 wd~~~~~ 156 (188)
||++++.
T Consensus 333 W~~~tGt 339 (340)
T 4aow_A 333 WQVTIGT 339 (340)
T ss_dssp EEEEC--
T ss_pred EeCCCcC
Confidence 9998864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=170.72 Aligned_cols=152 Identities=13% Similarity=0.160 Sum_probs=133.7
Q ss_pred Ceeecc----cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcccccce
Q 029743 1 MTFAAD----AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~----~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++|+|+ +++|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||++. +..+..
T Consensus 75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~ 153 (366)
T 3k26_A 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAI 153 (366)
T ss_dssp EEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-TEEEEE
T ss_pred EEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-CeEEEE
Confidence 468888 67999999999999999999999999999999999999999 899999999999999999986 455666
Q ss_pred e---eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeeccc----------------------------CCC
Q 029743 76 F---VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE----------------------------HSE 123 (188)
Q Consensus 76 ~---~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~----------------------------~~~ 123 (188)
+ .. |...+.++ |+|+++++++++.|+.|++||+++++....+.. |..
T Consensus 154 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 154 FGGVEG-HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp ECSTTS-CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred eccccc-ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 5 56 88999999 899999999999999999999988765544433 655
Q ss_pred cceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 124 YPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 124 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.|.+++|+ +++|++++.|+.|++||+.+...
T Consensus 233 -~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 233 -YVDCVRWL--GDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp -CCCEEEEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred -eEEEEEEc--CCEEEEEecCCEEEEEeCCCccc
Confidence 89999998 77999999999999999987643
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=165.87 Aligned_cols=152 Identities=13% Similarity=0.062 Sum_probs=125.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcC---------CCceeeeec-ccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLR---------KNTVQTRSE-FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~ 69 (188)
.|+|+ +++++.|++|++|+.. +++.+..+. .|...|.+++|+| +++++++++.|+.|++||++.
T Consensus 83 ~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~- 158 (343)
T 3lrv_A 83 GEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED- 158 (343)
T ss_dssp CCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS-
T ss_pred eeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC-
Confidence 46666 8999999999999765 444344443 6778899999999 999999999999999999986
Q ss_pred ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeee-eeccc-CCCcceeEEEeeCCCCEEEEEeCCCc
Q 029743 70 KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAE-HSEYPIESLALSHDRKFLGSISHDSM 146 (188)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~ 146 (188)
+.........+...+.++ |+|++.++++|+.|+.|++||+++++.. ..+.. |.. +|.+++|+|++.+|++++ ++.
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~fs~~g~~l~s~~-~~~ 236 (343)
T 3lrv_A 159 DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-KIKEVKFADNGYWMVVEC-DQT 236 (343)
T ss_dssp SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-CEEEEEECTTSSEEEEEE-SSB
T ss_pred CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-CEEEEEEeCCCCEEEEEe-CCe
Confidence 455544433155578898 8999999999999999999999998877 77877 765 899999999999999999 559
Q ss_pred EEEEeCCCccCCC
Q 029743 147 LKLWDLDDILKGS 159 (188)
Q Consensus 147 i~iwd~~~~~~~~ 159 (188)
|++||+++.....
T Consensus 237 v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 237 VVCFDLRKDVGTL 249 (343)
T ss_dssp EEEEETTSSTTCB
T ss_pred EEEEEcCCCCcce
Confidence 9999999876543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=166.64 Aligned_cols=153 Identities=17% Similarity=0.244 Sum_probs=133.2
Q ss_pred Ceeecc--cCeEEEEeCCCcEEEEEcCCCc--eeeeecccccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCcc-ccc
Q 029743 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCS 73 (188)
Q Consensus 1 l~~s~~--~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~-~~~ 73 (188)
++|+|+ +++|++++.|+.|++||+.+++ .+..+..|...|.+++|+|+ +++|++++.|+.|++||+.... ...
T Consensus 61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 140 (379)
T 3jrp_A 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 140 (379)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE
T ss_pred EEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee
Confidence 467776 8999999999999999999886 66777789999999999999 9999999999999999997642 233
Q ss_pred ceeeeccCCceeEE-eec-------------CCCEEEEecCCCeEEEEecccCe----eeeecccCCCcceeEEEeeCC-
Q 029743 74 DRFVGLSPNSVDAL-LKL-------------DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHD- 134 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~-------------~~~~l~~~~~d~~v~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~- 134 (188)
..+.. |...+.++ |+| ++.++++++.|+.|++||++++. ....+.+|.. .|.+++|+|+
T Consensus 141 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~ 218 (379)
T 3jrp_A 141 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 218 (379)
T ss_dssp EEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred EEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCC
Confidence 34566 88899999 888 69999999999999999998754 4566777866 8999999999
Q ss_pred --CCEEEEEeCCCcEEEEeCCCc
Q 029743 135 --RKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 135 --~~~l~~~~~d~~i~iwd~~~~ 155 (188)
+++|++++.|+.|++||+++.
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESST
T ss_pred CCCCeEEEEeCCCEEEEEeCCCC
Confidence 899999999999999999875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=166.76 Aligned_cols=153 Identities=14% Similarity=0.228 Sum_probs=132.7
Q ss_pred Ceeecc----cCeEEEEeCCCcEEEEEcCCCceeeeecc-----cccceEEEEEEeC----CCEEEEecCCCeEEEEEeC
Q 029743 1 MTFAAD----AMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----SEEELTSVVLMKN----GRKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 1 l~~s~~----~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~d~~i~~~d~~ 67 (188)
++|+|+ ...+++++.++.|++|++.+++.+..+.. |...|.+++|+|+ +++|++++.|+.|++||+.
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 103 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI 103 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch
Confidence 468873 45566667778999999998777666653 5577999999998 6799999999999999998
Q ss_pred CcccccceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeec---ccCCCcceeEEEeeCCCCEEEEEe
Q 029743 68 YFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
. ++.+..+.+ |...+.++ |+| ++.++++++.|+.|++||+++++.+..+ ..|.. .|.+++|+|++++|++++
T Consensus 104 ~-~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 104 T-MQCIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD-EVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp T-CCEEEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-CEEEEEECTTSSEEEEEE
T ss_pred h-ceEeeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC-ceeEEEECCCCCEEEEec
Confidence 6 577788888 99999999 899 8999999999999999999999988887 66755 899999999999999999
Q ss_pred CCCcEEEEeCCCcc
Q 029743 143 HDSMLKLWDLDDIL 156 (188)
Q Consensus 143 ~d~~i~iwd~~~~~ 156 (188)
.|+.|++||+++..
T Consensus 181 ~dg~i~i~d~~~~~ 194 (366)
T 3k26_A 181 MDHSLKLWRINSKR 194 (366)
T ss_dssp TTSCEEEEESCSHH
T ss_pred CCCCEEEEECCCCc
Confidence 99999999999764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-26 Score=160.74 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=132.5
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecc-cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+|+| +++++++++.|+.|++|| .++....+.. |...+.+++|+|++. +++++.++.|++||++. +..+..+..
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~- 223 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEG- 223 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEEC-
T ss_pred EEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhc-
Confidence 4666 899999999999999999 4555566665 889999999999988 99999999999999986 577888888
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
|...+.++ |+|++ .+++++.|+.|++||+++++++..+..|.. .|.+++|+|+++ +++++.|+.|++|++++....
T Consensus 224 ~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 224 HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI-SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS-CEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc-eEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 99999999 89999 688999999999999999999999988865 899999999998 667889999999999987655
Q ss_pred C
Q 029743 159 S 159 (188)
Q Consensus 159 ~ 159 (188)
.
T Consensus 301 ~ 301 (313)
T 3odt_A 301 S 301 (313)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-26 Score=166.38 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=128.0
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCccccccee--------
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRF-------- 76 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~-------- 76 (188)
++.++++++.++.|++||+.+++.+..+..|...|.+++|+|+++ .|++++.|+.|++||++.....+..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 566999999999999999999988889999999999999999998 58899999999999997644344333
Q ss_pred -------eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCe-----------------------------------
Q 029743 77 -------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR----------------------------------- 113 (188)
Q Consensus 77 -------~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~----------------------------------- 113 (188)
.. |...+.++ |+|+++++++++.|+.|++||+++++
T Consensus 235 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
T 4a11_B 235 QAVESANTA-HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG 313 (408)
T ss_dssp CCTTTSSCS-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET
T ss_pred eeecccccc-ccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC
Confidence 45 78889999 89999999999999999999987543
Q ss_pred ------------eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 114 ------------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 114 ------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
++..+.+|.. .|.+++|+|++++|++++.||.|++||+++.....
T Consensus 314 ~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 314 STIAVYTVYSGEQITMLKGHYK-TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TEEEEEETTTCCEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred CEEEEEECcCCcceeeeccCCC-eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 3444566755 89999999999999999999999999999876554
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=172.37 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=127.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC-Cceee-------eecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQT-------RSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
++|+|++++|++| .|+.|++||+.. ++... .+.+|...|.+++|+|++ ++|++++.|+.|++||++.. .
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~ 260 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS-A 260 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC-S
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC-c
Confidence 4799999999998 799999999984 44443 356899999999999998 99999999999999999863 4
Q ss_pred c----cceeeeccCC------------ceeEE-eecCCCEEEEecCCCeEEEEeccc-CeeeeecccCCCc---------
Q 029743 72 C----SDRFVGLSPN------------SVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEY--------- 124 (188)
Q Consensus 72 ~----~~~~~~~~~~------------~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~--------- 124 (188)
. ...+.. +.. .+.++ |+|+|++|++++. +.|++||+++ ++++..+..|...
T Consensus 261 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 261 LCDRHSKLFEE-PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp SSCTTCEEECC-C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred cccceeeEecc-CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 3 566666 665 89999 8999999999999 9999999997 8888888877420
Q ss_pred -----ceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 125 -----PIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 125 -----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.+..++|+|++++|++++.|+.|++||+.+...
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 023499999999999999999999999988654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-26 Score=178.25 Aligned_cols=154 Identities=23% Similarity=0.316 Sum_probs=131.6
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCC-----ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccc
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN-----TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 74 (188)
++|+|+ +++|++|+.|++|++|++... .....+.+|...|.+++|+|++++|++++.|+.|++||+.. +....
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~-~~~~~ 466 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA-GVSTR 466 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-Cccee
Confidence 467776 478999999999999998753 34567789999999999999999999999999999999986 57778
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeee---cccCCCcceeEEEeeCCC--CEEEEEeCCCcEE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP---IAEHSEYPIESLALSHDR--KFLGSISHDSMLK 148 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~ 148 (188)
.+.+ |...|.++ |+|++++|++++.|+.|++||+........ ..+|.. .|.+++|+|++ ..|++++.|+.|+
T Consensus 467 ~~~~-h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~d~~v~ 544 (694)
T 3dm0_A 467 RFVG-HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRD-WVSCVRFSPNTLQPTIVSASWDKTVK 544 (694)
T ss_dssp EEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSS-CEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred EEeC-CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCC-cEEEEEEeCCCCcceEEEEeCCCeEE
Confidence 8889 99999999 899999999999999999999865443322 245655 79999999987 5799999999999
Q ss_pred EEeCCCccC
Q 029743 149 LWDLDDILK 157 (188)
Q Consensus 149 iwd~~~~~~ 157 (188)
+||+++...
T Consensus 545 vwd~~~~~~ 553 (694)
T 3dm0_A 545 VWNLSNCKL 553 (694)
T ss_dssp EEETTTCCE
T ss_pred EEECCCCcE
Confidence 999987654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-26 Score=168.28 Aligned_cols=155 Identities=14% Similarity=0.221 Sum_probs=130.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC-CEEEEec--CCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGS--QSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~d~~i~~~d~~~~~~~~~~~~ 77 (188)
++|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|+|++ ..+++++ .|+.|++||+.. +..+..+.
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~ 301 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD 301 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe
Confidence 4799999999999999999999999999988888999999999999976 4555654 799999999986 46666665
Q ss_pred eccCCceeEE-eecCCCEEEE--ecCCCeEEEEecccCeeee--ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 78 GLSPNSVDAL-LKLDEDRVIT--GSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~--~~~d~~v~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
+...+.++ |+|+++++++ |+.+|.|++|++.++.... .+.+|.. .|.+++|+|++++|++++.|+.|++|++
T Consensus 302 --~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 302 --AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT-RVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp --CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS-CCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred --CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC-CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 56778888 8999999998 5589999999999865443 4667865 8999999999999999999999999999
Q ss_pred CCccCCC
Q 029743 153 DDILKGS 159 (188)
Q Consensus 153 ~~~~~~~ 159 (188)
.+.....
T Consensus 379 ~~~~~~~ 385 (401)
T 4aez_A 379 YDGDHVK 385 (401)
T ss_dssp CC-----
T ss_pred CCCcccc
Confidence 9876543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-26 Score=168.33 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=128.4
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCc----eeeeecccccceEEEEEEeCC-CEEEE--ecCCCeEEEEEeCCcccccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMKNG-RKVVC--GSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~--~~~d~~i~~~d~~~~~~~~~ 74 (188)
.++|+++++++++.|+.+++|+...++ .+.....|...|.+++|+|.+ ..+++ |+.|+.|++||+.+ +.+..
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~~ 315 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLS 315 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEEE
T ss_pred eecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccce
Confidence 578999999999999999999998764 334556789999999999966 45544 56799999999986 56666
Q ss_pred eeeeccCCceeEE-eecCCCEEEEec--CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.+.. +. .+.++ ++|+++.+++++ .|+.|++||+++++++..+.+|.+ .|.+++|+|++++|++++.|++|++||
T Consensus 316 ~~~~-~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~-~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 316 AVDA-HS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EEEC-SS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred eecc-cc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 6665 44 45555 899999887754 789999999999999999999976 899999999999999999999999999
Q ss_pred CCCccCC
Q 029743 152 LDDILKG 158 (188)
Q Consensus 152 ~~~~~~~ 158 (188)
+....+.
T Consensus 393 v~~~~~~ 399 (420)
T 4gga_A 393 CFELDPA 399 (420)
T ss_dssp CSCSSCC
T ss_pred CCCCCcc
Confidence 9875543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=168.51 Aligned_cols=154 Identities=20% Similarity=0.272 Sum_probs=134.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcccc------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC------ 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~------ 72 (188)
++|+|++ +|++|+.|++|++||+.+++.+..+.+|...|.+++|++ +++++++++.|+.|++||++.....
T Consensus 168 l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 168 LKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp EEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------
T ss_pred EEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc
Confidence 4678877 999999999999999999999999999999999999995 7789999999999999999753221
Q ss_pred ----------------cceeeeccCCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC
Q 029743 73 ----------------SDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 73 ----------------~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 136 (188)
...+.+ |...+.++ +++++++++++.|+.|++||+++++++..+.+|.. .|.+++|+|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 323 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRG-HMASVRTV-SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERK 323 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECC-CSSCEEEE-EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTT
T ss_pred CCcceEeeccCCCeEEEEEccC-ccceEEEE-cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCC
Confidence 334556 66666665 78899999999999999999999999999999876 899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCccCC
Q 029743 137 FLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
+|++++.|+.|++||+++....
T Consensus 324 ~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEeCCCcEEEEECCCCcEE
Confidence 9999999999999999876543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-26 Score=164.08 Aligned_cols=110 Identities=13% Similarity=0.173 Sum_probs=96.1
Q ss_pred Ceeecc---cCeEEEEeCCCcEEEEEcCC-Ccee-eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce
Q 029743 1 MTFAAD---AMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~---~~~l~~~~~d~~i~i~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++|+|+ |++|++++.|+.|++|++.+ +..+ ..+.+|...|.+++|+|++++|++++.|+.|++||+.. +... .
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~-~ 122 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-NQAI-Q 122 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEE-E
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC-CCce-e
Confidence 479998 69999999999999999987 5444 67788999999999999999999999999999999986 3443 3
Q ss_pred eeeccCCceeEE-e--ecCCCEEEEecCCCeEEEEecccCe
Q 029743 76 FVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGILPNR 113 (188)
Q Consensus 76 ~~~~~~~~v~~~-~--~~~~~~l~~~~~d~~v~~~d~~~~~ 113 (188)
+.. |...+.++ | +|++.++++++.|+.|++||+++++
T Consensus 123 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 123 IAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred ecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 566 89999999 7 8899999999999999999987654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=172.61 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=121.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeeccccc-----ceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---- 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---- 71 (188)
++|||+|++||+++.||+|++|+.+. ++..+. |.. .+.+++|+|+|++|++|+.||+|++||+.....
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~ 167 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE 167 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence 57999999999999999999999544 555566 655 499999999999999999999999999976321
Q ss_pred --cccee----eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee---eeec-ccCCCcceeEEEeeCCCCEEEE
Q 029743 72 --CSDRF----VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI---IQPI-AEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 72 --~~~~~----~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~---~~~~-~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
.+..+ .+ |...|.++ |+|+| +++++.|+.|++|++..+.. ..++ .+|.. .|.+++|+ ++.|++
T Consensus 168 ~i~l~ti~~~~~g-h~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LAS 241 (588)
T 2j04_A 168 FYFESSIRLSDAG-SKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVVL 241 (588)
T ss_dssp CEEEEEEECSCTT-CCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEEE
T ss_pred ceeeeeeeccccc-ccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccC-cEEEEEEE--CCEEEE
Confidence 24555 45 66799999 89999 88888999999999987773 2455 35644 79999999 688888
Q ss_pred EeCCCcEEEEeCCCccC
Q 029743 141 ISHDSMLKLWDLDDILK 157 (188)
Q Consensus 141 ~~~d~~i~iwd~~~~~~ 157 (188)
++ ++.|++||+.+...
T Consensus 242 a~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 242 TC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp EC-SSEEEEEETTTTEE
T ss_pred Ee-CCeEEEEECCCCeE
Confidence 87 69999999997665
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=183.41 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=131.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccc-------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS------- 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~------- 73 (188)
|+|+| +++|++++.|++|++||+.+++.+..+. |...|++++|+|++++|++|+.||.|++||++.. ...
T Consensus 64 l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~-~~~~~~i~~~ 140 (902)
T 2oaj_A 64 MRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD-QLSSFKLDNL 140 (902)
T ss_dssp EEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT-EEEEEEECCH
T ss_pred EEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC-ccccceeccc
Confidence 47999 8899999999999999999998888776 6789999999999999999999999999999753 321
Q ss_pred ----ceeeeccCCceeEE-eecC-CCEEEEecCCCeEEEEecccCeeeeecccC------------------CCcceeEE
Q 029743 74 ----DRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEH------------------SEYPIESL 129 (188)
Q Consensus 74 ----~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~------------------~~~~v~~~ 129 (188)
..+.+ |...|.++ |+|+ +..+++|+.|+.| +||+++++++..+..| .. .|.++
T Consensus 141 ~~~~~~~~~-h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~-~V~~v 217 (902)
T 2oaj_A 141 QKSSFFPAA-RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP-KVIQS 217 (902)
T ss_dssp HHHHTCSSS-CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC-CEEEE
T ss_pred ccccccccc-CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC-CeEEE
Confidence 23456 88899999 8995 5789999999999 9999999888777654 23 69999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 130 ALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+|+|++++|++++.|+.|++||+++...
T Consensus 218 ~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 218 LYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred EEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 9999999999999999999999987653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=180.79 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=141.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.|+.|++|++.+++.+..+.+|...|.+++|+|++++|++++.|+.|++|++.........+.+ |
T Consensus 61 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~ 139 (814)
T 3mkq_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-H 139 (814)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-C
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-C
Confidence 479999999999999999999999999999999999999999999999999999999999999999865466777888 9
Q ss_pred CCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC--CCCEEEEEeCCCcEEEEeCCCcc
Q 029743 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
...+.++ |+| ++..+++++.||.|++||+.++.....+..+....+..++|+| ++.+|++++.|+.|++||+++..
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 9999999 899 8899999999999999999988877777666534799999999 99999999999999999998765
Q ss_pred C
Q 029743 157 K 157 (188)
Q Consensus 157 ~ 157 (188)
.
T Consensus 220 ~ 220 (814)
T 3mkq_A 220 C 220 (814)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=167.18 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=131.8
Q ss_pred CeeecccC-eEEEEeCCCcEEEEEcCCCce-------eeeecccccceEEEEEEe-CCCEEEEecCCCeEEEEEeCCcc-
Q 029743 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTV-------QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK- 70 (188)
Q Consensus 1 l~~s~~~~-~l~~~~~d~~i~i~~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~- 70 (188)
|+|+|+++ +|++|+.||.|++|++..+.. ...+.+|...|.+++|+| ++..|++++.|+.|++||++...
T Consensus 187 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp EEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 47899988 999999999999999987322 345568999999999999 67899999999999999998642
Q ss_pred -cccceeeeccCCceeEE-eecCCC-EEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCC
Q 029743 71 -DCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDS 145 (188)
Q Consensus 71 -~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~ 145 (188)
..+..+.. |...+.++ |+|++. ++++|+.||.|++||+++ ..++..+..|.. .|.+++|+|+++ +|++++.|+
T Consensus 267 ~~~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 267 SKPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp SSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTS
T ss_pred CcceeEeec-CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCC
Confidence 46666777 89999999 899887 688999999999999997 567788888866 899999999985 688999999
Q ss_pred cEEEEeCCCc
Q 029743 146 MLKLWDLDDI 155 (188)
Q Consensus 146 ~i~iwd~~~~ 155 (188)
.|++||+...
T Consensus 345 ~i~iwd~~~~ 354 (430)
T 2xyi_A 345 RLHVWDLSKI 354 (430)
T ss_dssp CCEEEEGGGT
T ss_pred cEEEEeCCCC
Confidence 9999999873
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=170.40 Aligned_cols=156 Identities=11% Similarity=0.151 Sum_probs=126.5
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCC---Cce---eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC--ccc
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK---NTV---QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKD 71 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~---~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~~~ 71 (188)
++|+| ++++|++|+.|+.|++||+.. +.. ...+ .|...|.+++|+|++++|++++.|+.|++||+.. .+.
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 147 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQES 147 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETT
T ss_pred EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCc
Confidence 47999 999999999999999999876 432 2222 5899999999999999999999999999999951 133
Q ss_pred ccceeee--------c---cCCceeEE---eecCCCEEEEecCCCeEEEEecccCeeeeeccc--CCCcceeEEEeeCCC
Q 029743 72 CSDRFVG--------L---SPNSVDAL---LKLDEDRVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLALSHDR 135 (188)
Q Consensus 72 ~~~~~~~--------~---~~~~v~~~---~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~ 135 (188)
....+.. . +...+.++ +++++.++++++.|+.|++||+++++++..+.. |.. .|.+++|+|++
T Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~ 226 (437)
T 3gre_A 148 EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEEC 226 (437)
T ss_dssp EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTS
T ss_pred eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCC
Confidence 3333222 0 12334444 257899999999999999999999999999887 655 89999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCccCC
Q 029743 136 KFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
++|++++.|+.|++||+++....
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEE
T ss_pred CEEEEEcCCCeEEEEEcCCccEE
Confidence 99999999999999999876543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-26 Score=168.83 Aligned_cols=154 Identities=10% Similarity=0.188 Sum_probs=132.8
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecc--cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee-ec
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GL 79 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~ 79 (188)
++|++++|++++.|+.|++||+++++.+..+.. |...|.+++|+|++++|++++.|+.|++||++. +.++..+. .
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~- 255 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFG- 255 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCT-
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecC-
Confidence 557899999999999999999999999888887 889999999999999999999999999999986 56666665 5
Q ss_pred cCCceeEE-ee----cCCCEEEEecCCCeEEEEecccCeeeeecccCC-------------------------CcceeEE
Q 029743 80 SPNSVDAL-LK----LDEDRVITGSENGLISLVGILPNRIIQPIAEHS-------------------------EYPIESL 129 (188)
Q Consensus 80 ~~~~v~~~-~~----~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-------------------------~~~v~~~ 129 (188)
+...+.++ ++ |++.++++++.|+.|++||+++++++..+.+|. ...|+++
T Consensus 256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 335 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335 (437)
T ss_dssp TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence 77788888 54 568899999999999999999888776665431 2358899
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 130 ALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
+|+ ++++|++++.|+.|++||+.+.....
T Consensus 336 ~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 336 SVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 999 77899999999999999999877544
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-26 Score=166.55 Aligned_cols=154 Identities=10% Similarity=0.215 Sum_probs=133.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC----CceeeeecccccceEEEEEEeC-CCEEEEecCCCeEEEEEeCCcc-----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK----- 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~----- 70 (188)
++|+|++++|++++.|+.|++|++.. .+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+....
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence 47999999999999999999999987 3577788899999999999998 8999999999999999997643
Q ss_pred -cc--cceeeeccCCceeEE-eecC-CCEEEEecCCCeEEEEecccCeeeeecccCC-----CcceeEEEeeCCC-CEEE
Q 029743 71 -DC--SDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHS-----EYPIESLALSHDR-KFLG 139 (188)
Q Consensus 71 -~~--~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~-~~l~ 139 (188)
.. ...... |...+.++ |+|+ +.++++++.|+.|++||+++++.+..+..+. ...|.+++|+|++ .+|+
T Consensus 153 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMS-SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCC-SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccC-CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 11 122356 78889999 8998 7899999999999999999999888887652 2379999999997 6889
Q ss_pred EEeCCC---cEEEEeCCCc
Q 029743 140 SISHDS---MLKLWDLDDI 155 (188)
Q Consensus 140 ~~~~d~---~i~iwd~~~~ 155 (188)
+++.|+ .|++||+++.
T Consensus 232 ~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECCSSSCCCCEEETTST
T ss_pred EEECCCCCceEEEEeCCCC
Confidence 999998 9999999985
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=166.72 Aligned_cols=153 Identities=9% Similarity=0.047 Sum_probs=121.5
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCcee-----eeecccccceEEEEEEe--------CCCEEEEecCCCeEEEEEeCCc
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-----TRSEFSEEELTSVVLMK--------NGRKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~~~d~~~~ 69 (188)
+++++++|++++.|++|++||...+... ..+.+|...|.+++|+| ++++|++++.|++|++||+..
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~- 175 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD- 175 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET-
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC-
Confidence 4567889999999999999999887543 34678999999999998 789999999999999999976
Q ss_pred ccccceeeeccCCceeEE-eecCCC-EEEEecCCCeEEEEecccCeeeeec-------------------------ccCC
Q 029743 70 KDCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPI-------------------------AEHS 122 (188)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~v~~~d~~~~~~~~~~-------------------------~~~~ 122 (188)
+.++..+.. |...+.++ |+|++. +|++++.|+.|++||+++++..... .+|.
T Consensus 176 ~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 176 EGPILAGYP-LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp TEEEEEEEE-CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred CceeeeecC-CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 455566667 88899999 899874 8999999999999999876543221 2343
Q ss_pred CcceeEEEee-CCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 123 EYPIESLALS-HDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 123 ~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
. .+.++.|+ ++++.|++++.|+.+++||+......
T Consensus 255 ~-~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~ 290 (393)
T 4gq1_A 255 S-SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY 290 (393)
T ss_dssp S-SCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred c-cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC
Confidence 4 68889987 79999999999999999999876543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=164.64 Aligned_cols=151 Identities=17% Similarity=0.258 Sum_probs=138.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++ .+++++.++.|++|++..++.+..+..|...|.+++|+|++++|++++.|+.|++||++. +..+..+.. |
T Consensus 212 ~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~-~ 288 (425)
T 1r5m_A 212 VEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYG-H 288 (425)
T ss_dssp CEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECC-C
T ss_pred EEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecC-C
Confidence 4677764 588889999999999999988888889999999999999999999999999999999986 577778888 8
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
...+.++ |+|++ ++++++.++.|++||+++++.+..+..|.. .|.+++|+|++++|++++.|+.|++||+++..
T Consensus 289 ~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 289 SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV-PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC-CEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc-cEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 8999999 89999 999999999999999999999999988865 89999999999999999999999999998765
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=173.16 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=128.5
Q ss_pred cCeEEEEeC-CCcEEEEEcCCCcee-eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCce
Q 029743 7 AMKLLGTSG-DGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (188)
Q Consensus 7 ~~~l~~~~~-d~~i~i~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v 84 (188)
+++|++++. ++.|++|++..++.. ..+..|...|.+++|+|++++|++++.|+.|++||+.. +..+..+.+.|...+
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v 534 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKI 534 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCE
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCce
Confidence 778889998 999999999887665 66778999999999999999999999999999999986 455555543277889
Q ss_pred eEE-eec----------CCCEEEEecCCCeEEEEecccC-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 85 DAL-LKL----------DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 85 ~~~-~~~----------~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.++ |+| ++++|++++.|+.|++||+.++ +++..+.+|.. .|.+++|+|+++ |++++.|+.|++|++
T Consensus 535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc-ceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 999 899 9999999999999999999987 78888999976 899999999999 999999999999998
Q ss_pred CC
Q 029743 153 DD 154 (188)
Q Consensus 153 ~~ 154 (188)
+.
T Consensus 613 ~~ 614 (615)
T 1pgu_A 613 VL 614 (615)
T ss_dssp C-
T ss_pred ec
Confidence 74
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=161.86 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=128.4
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCc-eeeeeccccc----ceEEEE----EEeCCCEEEEecCCCeEEEEEeCCcccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEE----ELTSVV----LMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
+|+|++++|++++.|+.|++||+..+. .+..+..|.. .+.+++ |+|+++++++++.|+.|++||++.. ..
T Consensus 124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~ 202 (357)
T 3i2n_A 124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-AL 202 (357)
T ss_dssp GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT-EE
T ss_pred ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC-ce
Confidence 678999999999999999999999876 5666655444 788888 6789999999999999999999863 33
Q ss_pred cceeeeccCCceeEE-eec---CCCEEEEecCCCeEEEEecccCeeeeecc-----cCCCcceeEEEeeCCCC-EEEEEe
Q 029743 73 SDRFVGLSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNRIIQPIA-----EHSEYPIESLALSHDRK-FLGSIS 142 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~ 142 (188)
..... +...+.++ |+| ++.++++++.++.|++||++++++...+. +|.. .|.+++|+|+++ +|++++
T Consensus 203 -~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 203 -RWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp -EEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEE
T ss_pred -eeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEe
Confidence 34455 78899999 899 99999999999999999999887665554 7765 899999999998 899999
Q ss_pred CCCcEEEEeCCCccCC
Q 029743 143 HDSMLKLWDLDDILKG 158 (188)
Q Consensus 143 ~d~~i~iwd~~~~~~~ 158 (188)
.|+.|++||++.....
T Consensus 280 ~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 280 GAGGLHLWKYEYPIQR 295 (357)
T ss_dssp TTSEEEEEEEECCSCC
T ss_pred CCCcEEEeecCCCccc
Confidence 9999999999876543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=165.64 Aligned_cols=149 Identities=10% Similarity=0.142 Sum_probs=130.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceee----eecccccceEEEEEEeC---CCEEEEecCCCeEEEEEeCCccccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~ 73 (188)
++|+|++++|++++.++.|++|++.++.... .+.+|...|.+++|+|+ +++|++++.|+.|++||++. +..+
T Consensus 155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~ 233 (450)
T 2vdu_B 155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIV 233 (450)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCE
T ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Ccee
Confidence 4799999999999999999999998776543 67789999999999999 99999999999999999986 4555
Q ss_pred ce-eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccC------------------------CCccee
Q 029743 74 DR-FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------------------SEYPIE 127 (188)
Q Consensus 74 ~~-~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~------------------------~~~~v~ 127 (188)
.. +.+ |...+.++ |+ ++++|++++.|+.|++||+++++++..+..+ ....|.
T Consensus 234 ~~~~~~-h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 234 DKWLFG-HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEECCC-CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eeeecC-CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 55 557 89999999 89 9999999999999999999999877766522 123689
Q ss_pred EEEeeCCCCEEEEEe-CCCcEEEEeC
Q 029743 128 SLALSHDRKFLGSIS-HDSMLKLWDL 152 (188)
Q Consensus 128 ~~~~~~~~~~l~~~~-~d~~i~iwd~ 152 (188)
+++|+|++++|++++ .++.|++|++
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999999998 8999999999
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-25 Score=169.99 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=130.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC----ceeeeecccccc-eEEEEEEe--CCCEEEEecCCCeEEEEEeCCc----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEE-LTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF---- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~---- 69 (188)
++|+|++++|++++ ++.|++|++.++ +....+.+|... |.+++|+| ++++|++++.|+.|++||+...
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 102 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN 102 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc
Confidence 58999999999998 789999999988 888899999999 99999999 9999999999999999999532
Q ss_pred ---ccccceeeeccC--------------------------------------------CceeEE-eecCCC-EEEEecC
Q 029743 70 ---KDCSDRFVGLSP--------------------------------------------NSVDAL-LKLDED-RVITGSE 100 (188)
Q Consensus 70 ---~~~~~~~~~~~~--------------------------------------------~~v~~~-~~~~~~-~l~~~~~ 100 (188)
......+.. |. ..+.++ |+|+++ ++++++.
T Consensus 103 ~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 181 (615)
T 1pgu_A 103 SVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD 181 (615)
T ss_dssp EEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET
T ss_pred cccccccchhhc-ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeC
Confidence 133333333 33 345555 555555 6778888
Q ss_pred CCeEEEEecccCeeeeecccCCCc--ceeEEEeeCC-CCEEEEEeCCCcEEEEeCCCccCCCCC
Q 029743 101 NGLISLVGILPNRIIQPIAEHSEY--PIESLALSHD-RKFLGSISHDSMLKLWDLDDILKGSGN 161 (188)
Q Consensus 101 d~~v~~~d~~~~~~~~~~~~~~~~--~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (188)
|+.|++||+.+++.+..+..|... .|.+++|+|+ +++|++++.|+.|++||+++.......
T Consensus 182 d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 182 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 899999999999999999888431 6999999999 999999999999999999877654433
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-25 Score=160.29 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=124.5
Q ss_pred eeecccCeE-EEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC-------------------------------
Q 029743 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG------------------------------- 49 (188)
Q Consensus 2 ~~s~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------------- 49 (188)
++.++++.+ ++++.+++|++||..+++.+..+. +...|.+++++++.
T Consensus 65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 143 (355)
T 3vu4_A 65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVC 143 (355)
T ss_dssp EECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEE
T ss_pred EEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceE
Confidence 456666776 456677899999999998887776 56688888887642
Q ss_pred ----CEEEE--ecCCCeEEEEEeCCcc--------------c-ccceeeeccCCceeEE-eecCCCEEEEecCCCe-EEE
Q 029743 50 ----RKVVC--GSQSGTVLLYSWGYFK--------------D-CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGL-ISL 106 (188)
Q Consensus 50 ----~~l~~--~~~d~~i~~~d~~~~~--------------~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~-v~~ 106 (188)
..+++ ++.+|.|++||+.... . ++..+.+ |...|.++ |+|+|++|++++.|++ |++
T Consensus 144 ~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 144 EFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp EEETTEEEEEESSCTTCEEEEECCC------------------CCEEECC-CSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred EEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 23333 5778899999987532 0 2677888 99999999 8999999999999998 999
Q ss_pred EecccCeeeeecc-c-CCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 107 VGILPNRIIQPIA-E-HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 107 ~d~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
||+++++++..+. + |.. .|.+++|+|++++|++++.|+.|++||++...
T Consensus 223 wd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999999999997 5 755 89999999999999999999999999998653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=178.27 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=133.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcC--CCceeeeecccccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCcc-cccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~-~~~~~ 75 (188)
++|+|++++|++|+.||.|++|++. ++.....+.+|...|.+++|+|+ +++|++++.||.|++||+.... .....
T Consensus 15 l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 94 (753)
T 3jro_A 15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 94 (753)
T ss_dssp ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc
Confidence 4799999999999999999999998 45667788899999999999988 9999999999999999997632 25666
Q ss_pred eeeccCCceeEE-eecC--CCEEEEecCCCeEEEEecccCe--eeeecccCCCcceeEEEeeC-------------CCCE
Q 029743 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSH-------------DRKF 137 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~-------------~~~~ 137 (188)
+.+ |...+.++ |+|+ ++++++++.||.|++||++++. ....+.+|.. .|.+++|+| ++.+
T Consensus 95 ~~~-h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~-~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 95 HAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS-CEEEEEECCCC---------CGGGCC
T ss_pred ccC-CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC-ceEEEEecCcccccccccccCCCCCE
Confidence 777 89999999 8998 9999999999999999998773 3445567755 899999999 5899
Q ss_pred EEEEeCCCcEEEEeCCCc
Q 029743 138 LGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 138 l~~~~~d~~i~iwd~~~~ 155 (188)
|++++.||.|++||+++.
T Consensus 173 l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 173 FVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp EEEEETTSCEEEEEEETT
T ss_pred EEEEECCCeEEEEeccCC
Confidence 999999999999999865
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-25 Score=174.93 Aligned_cols=154 Identities=17% Similarity=0.236 Sum_probs=135.1
Q ss_pred Ceeecc--cCeEEEEeCCCcEEEEEcCCCc--eeeeecccccceEEEEEEeC--CCEEEEecCCCeEEEEEeCCcc-ccc
Q 029743 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCS 73 (188)
Q Consensus 1 l~~s~~--~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~-~~~ 73 (188)
++|+|+ +++|++|+.||.|++||+.+++ ....+.+|...|.+++|+|+ ++.+++++.|+.|++||++... ...
T Consensus 59 l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 59 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp EEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred EEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence 468887 9999999999999999999886 66677789999999999999 9999999999999999997642 234
Q ss_pred ceeeeccCCceeEE-eec-------------CCCEEEEecCCCeEEEEecccC----eeeeecccCCCcceeEEEeeCC-
Q 029743 74 DRFVGLSPNSVDAL-LKL-------------DEDRVITGSENGLISLVGILPN----RIIQPIAEHSEYPIESLALSHD- 134 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~-------------~~~~l~~~~~d~~v~~~d~~~~----~~~~~~~~~~~~~v~~~~~~~~- 134 (188)
..+.+ |...+.++ |+| ++.++++|+.||.|++||++++ .+...+.+|.. .|.+++|+|+
T Consensus 139 ~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~ 216 (753)
T 3jro_A 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 216 (753)
T ss_dssp EEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred eEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCC
Confidence 45667 88899999 888 5899999999999999999876 56667788866 8999999999
Q ss_pred --CCEEEEEeCCCcEEEEeCCCcc
Q 029743 135 --RKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 135 --~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+++|++++.||.|++||+.+..
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSS
T ss_pred CCCCEEEEEecCCEEEEecCCCCC
Confidence 8999999999999999998863
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=162.31 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=127.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEE--EeCCCEEEEecCCCeEEEEEeCCcccccc----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVL--MKNGRKVVCGSQSGTVLLYSWGYFKDCSD---- 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---- 74 (188)
++|+|++++|++++.|+.|++||+.+++.+. +..|...|.+++| +|++++|++++.|+.|++||++.. ..+.
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~ 169 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-NPMMVLQL 169 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-SCSEEEEC
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-cEEEEEec
Confidence 4799999999999999999999999988765 4569999999999 889999999999999999998642 1111
Q ss_pred --------------------------------------------------------------------------------
Q 029743 75 -------------------------------------------------------------------------------- 74 (188)
Q Consensus 75 -------------------------------------------------------------------------------- 74 (188)
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 170 PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence
Q ss_pred ------eeeeccCC------------ceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC
Q 029743 75 ------RFVGLSPN------------SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 75 ------~~~~~~~~------------~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 135 (188)
.+.. |.. .+.++ |+|++++|++++.||.|++||+++++++..+..|.. +|.+++|+|++
T Consensus 250 ~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g 327 (368)
T 3mmy_A 250 PAKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-PISACCFNHNG 327 (368)
T ss_dssp HHHHSEEEEC-SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS-CEEEEEECTTS
T ss_pred ccccceeeee-eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC-CceEEEECCCC
Confidence 1122 222 58888 899999999999999999999999999999998866 89999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCc
Q 029743 136 KFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~ 155 (188)
++|++++.|+..+.|++.+.
T Consensus 328 ~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp SCEEEEECCCSTTCGGGCCT
T ss_pred CeEEEEecccccccccccCC
Confidence 99999999886666665443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-25 Score=160.90 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=130.4
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeeec-------------ccccceEEEEEEe-CCCEEEEecCCCeEEEEE
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-------------FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYS 65 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d 65 (188)
++|+| ++++|++++.|+.|++|++.++.....+. +|...|.+++|+| ++++|++++.|+.|++||
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 128 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEee
Confidence 57999 99999999999999999999876544432 5899999999999 778999999999999999
Q ss_pred eCCcccccceeeeccCCceeEE-eec---CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEE
Q 029743 66 WGYFKDCSDRFVGLSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGS 140 (188)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 140 (188)
+.. +.....+. +...+.++ ++| ++.++++++.++.|++||+++++.+..+..|.. .|.+++|+|+++ .|++
T Consensus 129 ~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ll~~ 204 (408)
T 4a11_B 129 TNT-LQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVSWSPRYDYILAT 204 (408)
T ss_dssp TTT-TEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-CEEEEEECSSCTTEEEE
T ss_pred CCC-Cccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-cEEEEEECCCCCcEEEE
Confidence 986 45555554 56677777 655 566999999999999999999999999998866 899999999998 4889
Q ss_pred EeCCCcEEEEeCCCcc
Q 029743 141 ISHDSMLKLWDLDDIL 156 (188)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (188)
++.|+.|++||+++..
T Consensus 205 ~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 205 ASADSRVKLWDVRRAS 220 (408)
T ss_dssp EETTSCEEEEETTCSS
T ss_pred EcCCCcEEEEECCCCC
Confidence 9999999999998754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=162.90 Aligned_cols=155 Identities=13% Similarity=0.155 Sum_probs=131.9
Q ss_pred Ceeecc----c---CeEEEEeCCCcEEEEEcCCCce-----eeeeccc-----ccceEEEEEE----eCCCE-EEEecCC
Q 029743 1 MTFAAD----A---MKLLGTSGDGTLSVCNLRKNTV-----QTRSEFS-----EEELTSVVLM----KNGRK-VVCGSQS 58 (188)
Q Consensus 1 l~~s~~----~---~~l~~~~~d~~i~i~~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d 58 (188)
++|+|+ + ++|++++.|+.|++|++.+++. ...+..| ...|.+++|+ |+++. |++++.|
T Consensus 68 ~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 468888 9 9999999999999999998876 7777778 5899999999 99999 9999999
Q ss_pred CeEEEEEeCCc-----ccccc-----ee-------eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeeccc
Q 029743 59 GTVLLYSWGYF-----KDCSD-----RF-------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (188)
Q Consensus 59 ~~i~~~d~~~~-----~~~~~-----~~-------~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~ 120 (188)
+.|++||+... ...+. .+ .. |...+.++ |+|++ ++++++.++.|++||+++++++..+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT-PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSS-SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccC-CCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 99999999750 23444 44 34 67889999 89999 999999999999999999999988887
Q ss_pred ---C---CCcceeEEEeeCCCCEEEEEeCC---CcEEEEeCCCccCC
Q 029743 121 ---H---SEYPIESLALSHDRKFLGSISHD---SMLKLWDLDDILKG 158 (188)
Q Consensus 121 ---~---~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~ 158 (188)
| .. .|.+++|+|++++|++++.| +.|++||+++....
T Consensus 226 ~~~h~~~~~-~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~ 271 (397)
T 1sq9_A 226 QHSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI 271 (397)
T ss_dssp CC---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred cccccccCC-ccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence 6 66 89999999999999999999 99999999876543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-24 Score=153.54 Aligned_cols=152 Identities=17% Similarity=0.248 Sum_probs=129.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
|+||+++ +|++| .|++|+|||+.+++++..+. +|...|.+++|+|++++|++|+.|+.|++|++.. ++++..+.+
T Consensus 31 l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-~~~~~~~~~ 107 (318)
T 4ggc_A 31 VDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRNMTS 107 (318)
T ss_dssp EEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC-ceeEEEecC
Confidence 4789875 66665 58999999999998877665 6778899999999999999999999999999986 577888888
Q ss_pred ccCCceeEEeecCCCEEEEecCCCeEEEEecccC-eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
|...+.++ ++++..+++++.++.+++|+.... ..+..+.+|.. .+..+.+++++++|++++.|+.|++||+++...
T Consensus 108 -h~~~~~~~-~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 108 -HSARVGSL-SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp -CSSCEEEE-EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred -ccceEEEe-ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccC-ceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 87766554 566789999999999999998765 45566778866 899999999999999999999999999987654
Q ss_pred C
Q 029743 158 G 158 (188)
Q Consensus 158 ~ 158 (188)
.
T Consensus 185 ~ 185 (318)
T 4ggc_A 185 G 185 (318)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=156.08 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=137.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++++.|+.|++|+............+...+..+.++++++.|++++.|+.+++||+...........+ |
T Consensus 92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~-~ 170 (340)
T 4aow_A 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES-H 170 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSS-C
T ss_pred EEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEecc-c
Confidence 479999999999999999999999998888777788889999999999999999999999999998754444444566 7
Q ss_pred CCceeEE-eecC--CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~--~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
...+..+ ++++ ..++++++.|+.|++||+++++++..+.+|.. +|++++|+|++++|++++.|+.|++||+++...
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence 8888888 6654 46788999999999999999999999999976 899999999999999999999999999998654
Q ss_pred C
Q 029743 158 G 158 (188)
Q Consensus 158 ~ 158 (188)
.
T Consensus 250 ~ 250 (340)
T 4aow_A 250 L 250 (340)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=161.62 Aligned_cols=151 Identities=13% Similarity=0.085 Sum_probs=134.2
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
+++++++++++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++.+++++.|+.|++||+++ +.++..+.+ |.
T Consensus 275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~-h~ 352 (464)
T 3v7d_B 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQG-HT 352 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECC-CS
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeC-CC
Confidence 4578899999999999999999999999999999999999999999999999999999999999986 578888888 99
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
..+.++ ++ +.++++++.||.|++||++++.....+... . .+..++|++++++|++++ |+.|++||++++....
T Consensus 353 ~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT-N-LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT-T-CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC-C-CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 999988 55 689999999999999999988766655432 3 678889999999999988 8999999999877543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=157.04 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=125.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc---eeeeecccccceEEEEEEeCCC-EEEEecCCCeEEEEEe-CCcccccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSW-GYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~-~~~~~~~~~ 75 (188)
++|+|++++|++++.|+.|++|++..+. ....+..|...|.+++|+|+++ +|++++.|+.|++||+ ... .. ..
T Consensus 17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~-~~ 94 (342)
T 1yfq_A 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP-SF-QA 94 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS-SE-EE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC-ce-Ee
Confidence 4799999999999999999999998876 3345558999999999999999 9999999999999999 753 22 23
Q ss_pred eeec-cCCceeEE-eecCCCEEEEecCCCeEEEEeccc---------CeeeeecccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 76 FVGL-SPNSVDAL-LKLDEDRVITGSENGLISLVGILP---------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 76 ~~~~-~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
+.+. |...+.++ |+| +.++++++.|+.|++||+++ ++++..+. +.. .|.+++|+|++ +++++.|
T Consensus 95 ~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~--l~~~~~d 169 (342)
T 1yfq_A 95 LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN-KIFTMDTNSSR--LIVGMNN 169 (342)
T ss_dssp CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC-CEEEEEECSSE--EEEEEST
T ss_pred ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC-ceEEEEecCCc--EEEEeCC
Confidence 3210 66789999 899 99999999999999999998 77777776 545 89999999887 8899999
Q ss_pred CcEEEEeCCC
Q 029743 145 SMLKLWDLDD 154 (188)
Q Consensus 145 ~~i~iwd~~~ 154 (188)
+.|++||+++
T Consensus 170 ~~i~i~d~~~ 179 (342)
T 1yfq_A 170 SQVQWFRLPL 179 (342)
T ss_dssp TEEEEEESSC
T ss_pred CeEEEEECCc
Confidence 9999999987
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-24 Score=151.45 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=130.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc--ccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--KDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~ 78 (188)
++| |++++|++++.|+.|++||+.++.....+..|...|.+++|+|++++|++++.|+.+++|++... ......+.+
T Consensus 24 ~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 102 (313)
T 3odt_A 24 VVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG 102 (313)
T ss_dssp EEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC
T ss_pred EEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhh
Confidence 357 89999999999999999999999888888899999999999999999999999999999998653 245667778
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC-CCCEEEEEeCCCcEEEEeCCCc
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
|...+.++ + +++++++++.|+.|++|| .+.....+..|.. .+.+++|.| ++.++++++.|+.|++||....
T Consensus 103 -~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 175 (313)
T 3odt_A 103 -HQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQNDKV 175 (313)
T ss_dssp -CSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEETTEE
T ss_pred -cccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEecCce
Confidence 88999988 5 678999999999999999 6777788888866 899999998 8999999999999999995544
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=177.05 Aligned_cols=154 Identities=18% Similarity=0.280 Sum_probs=136.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++..+++++.|+.|++||+.. +.+...+.+
T Consensus 663 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~ 741 (1249)
T 3sfz_A 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRNTMFG 741 (1249)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS-SSEEEEECC
T ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC-cchhheecC
Confidence 47999999999999999999999999999999999999999999999 556899999999999999986 577788888
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc--------------------------------------
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-------------------------------------- 119 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-------------------------------------- 119 (188)
|...+.++ |+|+++++++++.||.|++||++++.....+.
T Consensus 742 -h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~ 820 (1249)
T 3sfz_A 742 -HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 820 (1249)
T ss_dssp -CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred -CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence 99999999 89999999999999999999998765433221
Q ss_pred -----------------cCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 120 -----------------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 120 -----------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+|.. .|.+++|+|+++++++++.|+.|++||+.+...
T Consensus 821 v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~ 874 (1249)
T 3sfz_A 821 VLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 874 (1249)
T ss_dssp EEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEEECSSSCEEEEETTTTEE
T ss_pred EEEEEecCCCceeEEcCCCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 3433 788999999999999999999999999987653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=162.45 Aligned_cols=145 Identities=16% Similarity=0.182 Sum_probs=121.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCce-------eeee----cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-------QTRS----EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 69 (188)
++|||||++|++|+.||+|++|++..+.. +..+ .+|...|.+++|+|+| +++++.|+.|++|++...
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC
Confidence 58999999999999999999999998752 4555 5678899999999999 888899999999999753
Q ss_pred cc--ccceee-eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEe--eCCCCEEEEEeC
Q 029743 70 KD--CSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL--SHDRKFLGSISH 143 (188)
Q Consensus 70 ~~--~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~ 143 (188)
.. ..+.+. + |...|.++ |+ |+++++++ ++.|++||+.+++......+|.. .|+.++| +|++..|++++.
T Consensus 213 ~~~~~~~tL~~~-h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 213 SHQPVSRMIQNA-SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp SSCCCEEEEECC-CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTCSSCEEEEECSS
T ss_pred ccccceeeeccc-ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeCCCCCEEEEEcC
Confidence 21 123464 6 77889999 78 68999887 58999999998877433336766 8999999 999999999999
Q ss_pred CCcEEEEeCC
Q 029743 144 DSMLKLWDLD 153 (188)
Q Consensus 144 d~~i~iwd~~ 153 (188)
+|+ ++|..+
T Consensus 288 dG~-klw~~d 296 (588)
T 2j04_A 288 TSY-KVLLED 296 (588)
T ss_dssp CEE-EEEESS
T ss_pred CCC-EEEeec
Confidence 999 999986
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-24 Score=157.77 Aligned_cols=147 Identities=18% Similarity=0.270 Sum_probs=128.4
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
++++++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+ ++.+++++.|+.|++||+.. +..+..+.+ |.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~-h~ 199 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET-GECIHTLYG-HT 199 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-TEEEEEECC-CS
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc-CcEEEEECC-CC
Confidence 467789999999999999999999999999999999999999997 67999999999999999976 577778888 88
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
..+.++ ++ ++++++++.|+.|++||+++++++..+.+|.. .|.+++| ++.++++++.|+.|++||+++...
T Consensus 200 ~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~ 271 (445)
T 2ovr_B 200 STVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGAYDFMVKVWDPETETC 271 (445)
T ss_dssp SCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE
T ss_pred CcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE
Confidence 888888 53 67899999999999999999988888888866 7888888 678899999999999999877553
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=156.66 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=131.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
++++++++|++|+.|+.|++||+.+++....+.+|...|.+++| +++.|++|+.||.|++||+.+ +..+..+.+ |.
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~-h~ 213 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-GEMLNTLIH-HC 213 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS-CCEEEEECC-CC
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC-CcEEEEEcC-CC
Confidence 46678999999999999999999999999999999999999998 789999999999999999986 577888888 99
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccCeee---eecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
..+.++ ++ +.++++++.|+.|++||++++... ..+.+|.. .|.+++| ++++|++++.|+.|++||+++...
T Consensus 214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~ 288 (435)
T 1p22_A 214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF 288 (435)
T ss_dssp SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTTCCE
T ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE
Confidence 999999 55 469999999999999999887655 56677865 8999998 678999999999999999988654
Q ss_pred C
Q 029743 158 G 158 (188)
Q Consensus 158 ~ 158 (188)
.
T Consensus 289 ~ 289 (435)
T 1p22_A 289 V 289 (435)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=155.24 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=129.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC---------CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC-cc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FK 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~ 70 (188)
++|+| +++|++++.|+.|++||+.. ++++..+. |...+.+++|+|++ +++++.++.|++||++. ..
T Consensus 107 l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 107 ICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp EEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTT
T ss_pred EEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccc
Confidence 46889 99999999999999999987 66666666 88999999999876 99999999999999976 33
Q ss_pred cccc-eeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccC------eeeeecccCCC--------cceeEEEeeC
Q 029743 71 DCSD-RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN------RIIQPIAEHSE--------YPIESLALSH 133 (188)
Q Consensus 71 ~~~~-~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~------~~~~~~~~~~~--------~~v~~~~~~~ 133 (188)
.... .... +...+.++ ++| +++++++++.+|.|++|+++.. +....+..|.. ..|.+++|+|
T Consensus 183 ~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 183 DNGTIEESG-LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261 (342)
T ss_dssp CCCEEEECS-CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred ccceeeecC-CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC
Confidence 3222 3334 67789999 899 9999999999999999999876 66667766632 2799999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 134 DRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
++++|++++.|+.|++||+.+.....
T Consensus 262 ~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 262 RHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp TTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCEEEEecCCceEEEEcCccHhHhh
Confidence 99999999999999999999776433
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=156.37 Aligned_cols=154 Identities=13% Similarity=0.201 Sum_probs=133.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|+|+|+|++|++|+.|+.|++||+.+++.+..+.+|...+.++.+ ++..|++++.|+.+++||.......+..+.+ |
T Consensus 153 v~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~-h 229 (420)
T 4gga_A 153 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG-H 229 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-C
T ss_pred EEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecc-c
Confidence 579999999999999999999999999999999999999998877 5789999999999999999876677778888 9
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCe----eeeecccCCCcceeEEEeeCCCC-EEEE--EeCCCcEEEEeC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDRK-FLGS--ISHDSMLKLWDL 152 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~d~~i~iwd~ 152 (188)
...+..+ ++|+++++++++.|+.+++|+..+++ .+.....|.. .|.+++|+|.+. .+++ ++.|+.|++||+
T Consensus 230 ~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS-CEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred ccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCC-ceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 9999999 79999999999999999999998765 3445566655 899999999765 4444 457999999999
Q ss_pred CCccCC
Q 029743 153 DDILKG 158 (188)
Q Consensus 153 ~~~~~~ 158 (188)
.+....
T Consensus 309 ~t~~~~ 314 (420)
T 4gga_A 309 CSGACL 314 (420)
T ss_dssp TTTEEE
T ss_pred Cccccc
Confidence 987643
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=154.40 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=120.4
Q ss_pred eeecccCeEEE--EeCCCcEEEEEcCCCc----------------eeeeecccccceEEEEEEeCCCEEEEecCCCe-EE
Q 029743 2 TFAADAMKLLG--TSGDGTLSVCNLRKNT----------------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VL 62 (188)
Q Consensus 2 ~~s~~~~~l~~--~~~d~~i~i~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~ 62 (188)
++++ +++++ |+.+|.|++||+.++. .+..+.+|...|.+++|+|++++|++++.|++ |+
T Consensus 144 ~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~ 221 (355)
T 3vu4_A 144 EFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIR 221 (355)
T ss_dssp EEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEE
T ss_pred EEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEE
Confidence 3455 45665 5789999999998765 25778899999999999999999999999998 99
Q ss_pred EEEeCCcccccceee-eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee--eeec--------------------
Q 029743 63 LYSWGYFKDCSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPI-------------------- 118 (188)
Q Consensus 63 ~~d~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~--~~~~-------------------- 118 (188)
+||+++ +.++..+. +.|...+.++ |+|++++|++++.|+.|++||++.+.. ...+
T Consensus 222 iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (355)
T 3vu4_A 222 VFKTED-GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKL 300 (355)
T ss_dssp EEETTT-CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEEC
T ss_pred EEECCC-CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEe
Confidence 999986 56777776 2277889999 899999999999999999999975431 1111
Q ss_pred ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 119 AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 119 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
......+...++|+++++.|++++.||.+++|++....
T Consensus 301 ~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 301 SVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 11111134678999999999999999999999987654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=158.79 Aligned_cols=156 Identities=12% Similarity=0.163 Sum_probs=109.9
Q ss_pred Ceeec--------ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAA--------DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~--------~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
++|+| ++++|++++.|++|+|||+.++..+..+..|...+.+++|+|++ ++|++++.|++|++||+.....
T Consensus 142 v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 142 IDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS 221 (393)
T ss_dssp EEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred EEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence 46776 89999999999999999999888877788899999999999987 5899999999999999975321
Q ss_pred ccc------------------------eeeeccCCceeEE-e-ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcc
Q 029743 72 CSD------------------------RFVGLSPNSVDAL-L-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125 (188)
Q Consensus 72 ~~~------------------------~~~~~~~~~v~~~-~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~ 125 (188)
... ...+ |...+.++ | .|+++.+++++.|+.+++||+..+.....+..+.. .
T Consensus 222 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~-~ 299 (393)
T 4gq1_A 222 AEENSQTELVKNPWLLTLNTLPLVNTCHSSG-IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM-K 299 (393)
T ss_dssp ---------CSCCCSEEEESGGGC------C-CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------
T ss_pred cccccccCCcccceEEecccccceeeeeccc-ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC-c
Confidence 111 1134 56677788 6 48999999999999999999987765555444322 2
Q ss_pred eeE------------------EEeeC--CCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 126 IES------------------LALSH--DRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 126 v~~------------------~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
+.. ..|+| ++.++++++.|+.|++||+.+....
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred cccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 222 23333 3446678889999999999876543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=159.26 Aligned_cols=147 Identities=22% Similarity=0.334 Sum_probs=126.3
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
..+++++++|+.|+.|++||+.+++.+..+.+|...|.++.+ +++.+++++.|+.|++||+++ +.++..+.+ |...
T Consensus 263 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~-h~~~ 338 (435)
T 1p22_A 263 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC-GACLRVLEG-HEEL 338 (435)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT-CCEEEEECC-CSSC
T ss_pred EeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC-CCEEEEEeC-CcCc
Confidence 347899999999999999999999999999999999999998 478999999999999999986 577888888 9999
Q ss_pred eeEEeecCCCEEEEecCCCeEEEEecccCe---------eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 84 VDALLKLDEDRVITGSENGLISLVGILPNR---------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 84 v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
+.++.. ++.++++|+.||.|++||++++. ++..+.+|.+ .|.+++| ++.+|++++.||.|++||+.+
T Consensus 339 v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 339 VRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEEEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEEEEe-cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC-CeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 999832 78999999999999999998766 7788888866 8999999 788999999999999999987
Q ss_pred ccCC
Q 029743 155 ILKG 158 (188)
Q Consensus 155 ~~~~ 158 (188)
....
T Consensus 415 ~~~~ 418 (435)
T 1p22_A 415 DPAA 418 (435)
T ss_dssp ----
T ss_pred CCCc
Confidence 6543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-23 Score=146.57 Aligned_cols=141 Identities=8% Similarity=-0.021 Sum_probs=109.9
Q ss_pred CCcEEEEEc-CCCceeeeecccccceEEEEEEe---CCCEEEEecCCCeEEEEEeCCcccccceeeeccCC---ceeEE-
Q 029743 16 DGTLSVCNL-RKNTVQTRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN---SVDAL- 87 (188)
Q Consensus 16 d~~i~i~~~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~v~~~- 87 (188)
|+.|++|++ .+++.+..+..|...+..++|+| ++..|++++.|++|++||+.+ +++++++.+ |.. .+.++
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-Gk~l~tL~g-~~~~v~~v~~va 233 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-GQLLKKMHI-DDSYQASVCHKA 233 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-CCEEEEEEC-CC---CCCEEEE
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC-CcEEEEEcC-CCcceeeeEEEE
Confidence 889999999 45788788888999999999999 679999999999999999987 678888876 443 45555
Q ss_pred eecCCCEE------------EEecCCCeEEEEecccCeeeeec-----ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEE
Q 029743 88 LKLDEDRV------------ITGSENGLISLVGILPNRIIQPI-----AEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 88 ~~~~~~~l------------~~~~~d~~v~~~d~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 150 (188)
|+|+|.++ ++|+.|++|++||..+++.+..+ .+|.. .+.+..+ ++..+++++.|++|+||
T Consensus 234 fSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~~--sg~~lASgS~DgTIkIW 310 (356)
T 2w18_A 234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGDV--KDHCAAAILTSGTIAIW 310 (356)
T ss_dssp EEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred ECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEcccc--CCCEEEEEcCCCcEEEE
Confidence 89999876 56778999999999999877654 35543 3433334 47889999999999999
Q ss_pred eCCCccCCCCC
Q 029743 151 DLDDILKGSGN 161 (188)
Q Consensus 151 d~~~~~~~~~~ 161 (188)
|+.+++....+
T Consensus 311 Dl~tGk~l~tL 321 (356)
T 2w18_A 311 DLLLGQCTALL 321 (356)
T ss_dssp ETTTCSEEEEE
T ss_pred ECCCCcEEEEe
Confidence 99998755543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=150.78 Aligned_cols=145 Identities=19% Similarity=0.259 Sum_probs=129.4
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCcee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 85 (188)
+++++++++.|+.|++||+.+++.+..+.+|...|.++.|+ ++.+++++.|+.|++||+.. +..+..+.+ |...+.
T Consensus 168 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~-~~~~v~ 243 (445)
T 2ovr_B 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-GQCLHVLMG-HVAAVR 243 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-CCEEEEEEC-CSSCEE
T ss_pred cCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC-CcEEEEEcC-CcccEE
Confidence 36799999999999999999999999999999999999995 67899999999999999986 577778888 999999
Q ss_pred EEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
++.. +++++++++.|+.|++||+++++++..+.+|.. .|.+++| ++.++++++.|+.|++||+++....
T Consensus 244 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 244 CVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp EEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEE-CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE
Confidence 8822 788999999999999999999999999998866 8999998 7889999999999999999876543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=154.53 Aligned_cols=152 Identities=9% Similarity=0.001 Sum_probs=121.1
Q ss_pred CeeecccCeEE----EEeCCCcEEEEEcCCC--------c---eeeeecccccceEEEEEEeC-CCEEEEecCCCeEEEE
Q 029743 1 MTFAADAMKLL----GTSGDGTLSVCNLRKN--------T---VQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLY 64 (188)
Q Consensus 1 l~~s~~~~~l~----~~~~d~~i~i~~~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~ 64 (188)
++|+|++++|+ +++.|+.|+|||+.++ + ....+.+|...|.+++|+|+ +++|++++.|++|++|
T Consensus 98 l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw 177 (434)
T 2oit_A 98 LALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL 177 (434)
T ss_dssp EEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence 47999999999 7888999999998654 1 13455679999999999997 7899999999999999
Q ss_pred EeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC------CcceeEEEeeCCCCE
Q 029743 65 SWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------EYPIESLALSHDRKF 137 (188)
Q Consensus 65 d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~ 137 (188)
|++.. .......+ |...+.++ |+|+|++|++|+.||.|++||++ ++....+..+. ...|.+++|++++.+
T Consensus 178 D~~~~-~~~~~~~~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 178 QVTET-VKVCATLP-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp EESSS-EEEEEEEC-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred EcCCC-cceeeccC-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence 99864 44445566 78889999 89999999999999999999998 55444443321 126899999999887
Q ss_pred EEEEe-CCC------cEEEEeCCCc
Q 029743 138 LGSIS-HDS------MLKLWDLDDI 155 (188)
Q Consensus 138 l~~~~-~d~------~i~iwd~~~~ 155 (188)
+++.+ .+| .+++|++.+.
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEccCCCccCCCCceEEEEeccC
Confidence 75433 443 3899999865
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=156.83 Aligned_cols=150 Identities=8% Similarity=0.050 Sum_probs=120.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCC----------ceeee-----ecccccceEEEEEEeCCCEEE----EecCCCeE
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----------TVQTR-----SEFSEEELTSVVLMKNGRKVV----CGSQSGTV 61 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~----------~~~~~-----~~~~~~~v~~~~~~~~~~~l~----~~~~d~~i 61 (188)
|++++++.++++++.++ +++|+.... ..+.. ...+...|.+++|+|++++|+ +++.|+.|
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v 120 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII 120 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceE
Confidence 47899999999998887 888875310 01110 112556799999999999999 78889999
Q ss_pred EEEEeCCc-----c--cc---cceeeeccCCceeEE-eecC-CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEE
Q 029743 62 LLYSWGYF-----K--DC---SDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129 (188)
Q Consensus 62 ~~~d~~~~-----~--~~---~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 129 (188)
++||+... . +. ...+.+ |...+.++ |+|+ +.+|++++.||.|++||++++.......+|.. .|.++
T Consensus 121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~-~v~~v 198 (434)
T 2oit_A 121 AFFDVRTFSNEAKQQKRPFAYHKLLKD-AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV-AVTSV 198 (434)
T ss_dssp EEEEHHHHHCTTCSSCCCSEEEECCCS-GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG-CEEEE
T ss_pred EEEEccccccCCcCCcceeeeeeccCC-CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC-ceeEE
Confidence 99998642 0 11 344566 88899999 8997 88999999999999999998877666666655 89999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 130 ALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
+|+|+|++|++++.|+.|++||++
T Consensus 199 ~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 199 CWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EECTTSSCEEEEETTSCEEEECTT
T ss_pred EEcCCCCEEEEEcCCCcEEEEccC
Confidence 999999999999999999999998
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=148.79 Aligned_cols=153 Identities=13% Similarity=0.051 Sum_probs=131.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceee-----eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++|+|+++++++++.++.|++||+.+++... .+.+|...|.+++|+|+++.+++++.++.|++||++. +..+..
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-~~~~~~ 206 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-LAYKAT 206 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-CCEEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-ceEEEE
Confidence 5789977778888888999999999988776 3457888999999999999999999999999999976 566677
Q ss_pred eeeccCCceeEE-eecCCCEEE-EecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe--------CCC
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS--------HDS 145 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~-~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~ 145 (188)
+.. +...+.++ ++|++++++ +++.++.|++||+++++.+..+..+ . .+.+++|+|++++|++++ .|+
T Consensus 207 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg 283 (433)
T 3bws_A 207 VDL-TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-G-LPRGLLLSKDGKELYIAQFSASNQESGGG 283 (433)
T ss_dssp EEC-SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-S-EEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred EcC-CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-C-CceEEEEcCCCCEEEEEECCCCccccCCC
Confidence 777 88889999 899999885 5558999999999999988888765 4 589999999999998887 488
Q ss_pred cEEEEeCCCccC
Q 029743 146 MLKLWDLDDILK 157 (188)
Q Consensus 146 ~i~iwd~~~~~~ 157 (188)
.|++||+.+...
T Consensus 284 ~i~~~d~~~~~~ 295 (433)
T 3bws_A 284 RLGIYSMDKEKL 295 (433)
T ss_dssp EEEEEETTTTEE
T ss_pred eEEEEECCCCcE
Confidence 999999987643
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=143.61 Aligned_cols=152 Identities=13% Similarity=0.150 Sum_probs=125.2
Q ss_pred CeeecccCeE-EEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+|+++++ ++++.++.|++||+.+++.+..+..+. .+.+++|+|+++.|+ +++.++.|++||+.. ++.+..+..
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~ 114 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAGTVKT 114 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC-CeEEEEEeC
Confidence 4799999987 566689999999999999888877544 899999999999875 455679999999986 455555554
Q ss_pred ccCCceeEE-eecCCCEE-EEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE-EEEeCCCcEEEEeCCCc
Q 029743 79 LSPNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLDDI 155 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l-~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~ 155 (188)
...+.++ |+|+++++ ++++.++.|++||+.+++.+..+..+. .+..++|+|++++| ++++.++.|++||+++.
T Consensus 115 --~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 115 --GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR--SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp --SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred --CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 4456777 89999977 688889999999999999888887763 57999999999887 56778899999999876
Q ss_pred cCC
Q 029743 156 LKG 158 (188)
Q Consensus 156 ~~~ 158 (188)
...
T Consensus 191 ~~~ 193 (391)
T 1l0q_A 191 SVI 193 (391)
T ss_dssp EEE
T ss_pred eEE
Confidence 543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-21 Score=141.71 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=125.6
Q ss_pred CeeecccCeE-EEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEE-EEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+|++++| ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||++. +.....+.
T Consensus 121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~- 197 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK- 197 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe-
Confidence 4789999987 67777999999999999888877754 567999999999887 5778889999999976 45555454
Q ss_pred ccCCceeEE-eecCCCEEEEec---CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE-EEEeCCCcEEEEeCC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGS---ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLD 153 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~---~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~ 153 (188)
+...+.++ ++|+++++++++ .++.|++||+++++.+..+..+. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus 198 -~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred -cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC--CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 45567777 899999998887 68999999999999888887764 57899999999987 566789999999998
Q ss_pred CccC
Q 029743 154 DILK 157 (188)
Q Consensus 154 ~~~~ 157 (188)
+...
T Consensus 275 ~~~~ 278 (391)
T 1l0q_A 275 TNTI 278 (391)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 7653
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=139.34 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=120.3
Q ss_pred CeeecccCeEEEEeCCC---cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCC--eEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGTSGDG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~ 74 (188)
++|||+|++|++++.++ .|++||+.+++.. .+..|...+.+++|+|+|+.|+ +++.++ .|++||+.. +. ..
T Consensus 184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~-~~ 260 (415)
T 2hqs_A 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IR 260 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CC-EE
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CC-EE
Confidence 47999999999998875 9999999988775 4556788999999999999887 666555 499999875 23 35
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecC-CC--eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC---CcE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i 147 (188)
.+.. +...+.++ |+|+|++|++++. ++ .|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ ..|
T Consensus 261 ~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i 337 (415)
T 2hqs_A 261 QVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHI 337 (415)
T ss_dssp ECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred eCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEE
Confidence 6666 77788888 8999999888775 44 6888898877643 4444534 68899999999999888764 589
Q ss_pred EEEeCCCccCC
Q 029743 148 KLWDLDDILKG 158 (188)
Q Consensus 148 ~iwd~~~~~~~ 158 (188)
++||+.+....
T Consensus 338 ~~~d~~~~~~~ 348 (415)
T 2hqs_A 338 AKQDLATGGVQ 348 (415)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCCEE
Confidence 99999876543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.8e-22 Score=143.66 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=94.9
Q ss_pred CeeecccCeEEEEeCCC----cEEEEEcCCCce----eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc
Q 029743 1 MTFAADAMKLLGTSGDG----TLSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~----~i~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
++|+|+++++++++.++ .+++|++..... ...+.+|...|++++|+|+|++|++|+.|++|+|||+.+ +++
T Consensus 225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~ 303 (365)
T 4h5i_A 225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSM 303 (365)
T ss_dssp EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEE
T ss_pred EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcE
Confidence 47999999999998876 578888876543 345668899999999999999999999999999999987 466
Q ss_pred cce-eeeccCCceeEE-eecCCCEEEEecCCCeEEEEeccc
Q 029743 73 SDR-FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 73 ~~~-~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
+.. +.+ |...|+++ |+|+|++|++++.|++|+||++..
T Consensus 304 ~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 304 SKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 655 478 99999999 999999999999999999999964
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=139.87 Aligned_cols=152 Identities=10% Similarity=0.058 Sum_probs=125.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccceeeec
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
++|+|+++++++++.++.|++||+.+++.+..+..|...+.+++|+|+++.++ +++.++.|++||++. +..+..+..
T Consensus 175 ~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~- 252 (433)
T 3bws_A 175 ISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLEIRKTDK- 252 (433)
T ss_dssp EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEEEEECCC-
T ss_pred EEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcEEEEecC-
Confidence 36889999999999999999999999988888888889999999999998885 555799999999976 455555554
Q ss_pred cCCceeEE-eecCCCEEEEec--------CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE-EEEeCCCcEEE
Q 029743 80 SPNSVDAL-LKLDEDRVITGS--------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKL 149 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~--------~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i 149 (188)
...+.++ ++|+++++++++ .|+.|++||+++++.+..+. +.. .+.+++|+|+++.+ ++++.++.|++
T Consensus 253 -~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 253 -IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPG-NKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp -CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEE-CEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred -CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCC-CcceEEECCCCCEEEEEecCCCEEEE
Confidence 3457777 899999999887 48899999999988776663 323 68899999999765 56688999999
Q ss_pred EeCCCccC
Q 029743 150 WDLDDILK 157 (188)
Q Consensus 150 wd~~~~~~ 157 (188)
||+.+...
T Consensus 330 ~d~~~~~~ 337 (433)
T 3bws_A 330 YDLKEKKV 337 (433)
T ss_dssp EETTTTEE
T ss_pred EECCCCcE
Confidence 99987654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=134.81 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=117.1
Q ss_pred CeeecccCeEE-EEeCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CC--eEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLL-GTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~-~~~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~ 74 (188)
++|+|||++|+ +++.++ .|++||+.+++. ..+..|...+.+++|+|+|+.|++++. ++ .|.+||+.. ....
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~--~~~~ 304 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQ 304 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCE
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC--CCEE
Confidence 47999999888 555555 499999988776 456678889999999999998888775 44 677778764 2344
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCC---CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC---cE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i 147 (188)
.+.. +...+.++ |+|+|++|++++.+ ..|++||+.+++.. .+..+ . .+.+++|+|+|++|++++.++ .|
T Consensus 305 ~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~-~-~~~~~~~spdg~~l~~~s~~~~~~~l 380 (415)
T 2hqs_A 305 RITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST-F-LDETPSLAPNGTMVIYSSSQGMGSVL 380 (415)
T ss_dssp ECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS-S-SCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred EEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC-C-CcCCeEEcCCCCEEEEEEcCCCccEE
Confidence 4555 66677777 89999999888754 58999999988764 45555 3 689999999999999888776 79
Q ss_pred EEEeCCCccCC
Q 029743 148 KLWDLDDILKG 158 (188)
Q Consensus 148 ~iwd~~~~~~~ 158 (188)
++||+......
T Consensus 381 ~~~d~~g~~~~ 391 (415)
T 2hqs_A 381 NLVSTDGRFKA 391 (415)
T ss_dssp EEEETTSCCEE
T ss_pred EEEECCCCcEE
Confidence 99999865443
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=142.29 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=111.6
Q ss_pred CeeecccCeEEEEeC-CC-----cEEEEEcCCCceeeeeccccc------------------------ceEEEEEEeCCC
Q 029743 1 MTFAADAMKLLGTSG-DG-----TLSVCNLRKNTVQTRSEFSEE------------------------ELTSVVLMKNGR 50 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~-----~i~i~~~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~ 50 (188)
++|||||++|++++. ++ .|++||+.+++....+..+.. .+.+++|+|||+
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~ 121 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ 121 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence 479999999999988 87 899999999887666654332 378999999999
Q ss_pred EEEEecCCCeEEEEEeCCccc--ccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCc---
Q 029743 51 KVVCGSQSGTVLLYSWGYFKD--CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY--- 124 (188)
Q Consensus 51 ~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~--- 124 (188)
+|++++. +.|++||+.. +. ....+.. +...+..+ |+|||++|++++. +.|++||+.+++.......+...
T Consensus 122 ~l~~~~~-~~i~~~d~~~-~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~ 197 (741)
T 2ecf_A 122 RLLFPLG-GELYLYDLKQ-EGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGN 197 (741)
T ss_dssp EEEEEET-TEEEEEESSS-CSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEE
T ss_pred EEEEEeC-CcEEEEECCC-CCcceEEEccc-CCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceec
Confidence 9998886 8999999975 31 4455666 77778888 8999999998874 58999999988776554433220
Q ss_pred ------------ceeEEEeeCCCCEEEEEeCCC
Q 029743 125 ------------PIESLALSHDRKFLGSISHDS 145 (188)
Q Consensus 125 ------------~v~~~~~~~~~~~l~~~~~d~ 145 (188)
.+..++|+|||++|++++.|+
T Consensus 198 g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 198 GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred cccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence 147899999999999887665
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=143.13 Aligned_cols=140 Identities=14% Similarity=0.033 Sum_probs=107.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeeccccc---ceEEEEEEeCCCEEEEecCC---------CeEEEEEeCC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGSQS---------GTVLLYSWGY 68 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~~~d~~~ 68 (188)
++|+|||+++++ +.|++|++||+.+++....+..|.. .+.+++|+|||++|++++.+ +.+.+||+..
T Consensus 22 ~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 100 (723)
T 1xfd_A 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (723)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred cEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC
Confidence 579999998776 7889999999999988777776654 49999999999999998764 7888999976
Q ss_pred cccccceeee--ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCc-----------------ceeE
Q 029743 69 FKDCSDRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-----------------PIES 128 (188)
Q Consensus 69 ~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~-----------------~v~~ 128 (188)
. .. ..+.. .+...+..+ |+|||++|+.++. +.|++||+.+++.......+... .+.+
T Consensus 101 ~-~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 101 G-DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp C-CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred C-ce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence 3 33 33322 033346777 8999999998886 78999999988766554443220 1278
Q ss_pred EEeeCCCCEEEEEeCC
Q 029743 129 LALSHDRKFLGSISHD 144 (188)
Q Consensus 129 ~~~~~~~~~l~~~~~d 144 (188)
++|+|||++|++++.+
T Consensus 178 ~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAIN 193 (723)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred EEECCCCCEEEEEEEC
Confidence 9999999999988754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=122.04 Aligned_cols=153 Identities=13% Similarity=0.046 Sum_probs=114.8
Q ss_pred CeeecccCeEEEEeC--CCcEEEE--EcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccce
Q 029743 1 MTFAADAMKLLGTSG--DGTLSVC--NLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~--d~~i~i~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++|+|++++|++++. ++...|| +...+.. ..+..+ ..+..++|+|+++.|+ ++..++.+++|+++........
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence 579999999999983 3445555 4455443 344433 3588999999999877 7788999999998643444555
Q ss_pred eeeccCCceeEE-eecCCCEEEEec-CCCeEEEEecc-cCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC--------
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-------- 144 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------- 144 (188)
+.. +...+.++ |+|+|+++++++ .++.+++|++. .+.....+..+.. .+..++|+|++++|++++.+
T Consensus 168 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 168 LTH-GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY-GDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp CCC-SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE-EEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred ccc-CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc-ccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 666 67778888 899999887665 58889999886 4556667776644 78999999999999888765
Q ss_pred ---CcEEEEeCCCccC
Q 029743 145 ---SMLKLWDLDDILK 157 (188)
Q Consensus 145 ---~~i~iwd~~~~~~ 157 (188)
+.|++||+.+...
T Consensus 246 ~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNV 261 (297)
T ss_dssp SEEEEEEEEETTSCSC
T ss_pred cCceEEEEEecCCCCc
Confidence 5699999987654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=120.48 Aligned_cols=154 Identities=11% Similarity=0.097 Sum_probs=120.3
Q ss_pred CeeecccCeEEEE-eCCCcEEEEEcCCCceeeeeccccc---------ceEEEEEEeCCCEEEEec--CCCeEEEEEeCC
Q 029743 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEE---------ELTSVVLMKNGRKVVCGS--QSGTVLLYSWGY 68 (188)
Q Consensus 1 l~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~ 68 (188)
++|+|++++++++ ..++.|.+||..+++.+..+..+.. .+.+++|+|+++.+++++ .++.|.+||+..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 4689999966555 4579999999999988777764332 278899999999887766 478899999976
Q ss_pred cccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeeccc----CCCcceeEEEeeCCCCEEEEEeC
Q 029743 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE----HSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
+.....+.. +...+..+ ++|+|+++++++.++.|.+||+.+++.+..+.. +.. .+..++|+|+++++++++.
T Consensus 174 -~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 174 -IKLKTAIQN-TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEH-FFINISLDTARQRAFITDS 250 (353)
T ss_dssp -TEEEEEECC-CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCC-CEEEEEEETTTTEEEEEES
T ss_pred -CceEEEecC-CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc-ccceEEECCCCCEEEEEeC
Confidence 455555653 44446666 899999999999999999999999988776654 322 5778999999998776654
Q ss_pred -CCcEEEEeCCCccC
Q 029743 144 -DSMLKLWDLDDILK 157 (188)
Q Consensus 144 -d~~i~iwd~~~~~~ 157 (188)
++.|.+||+.+...
T Consensus 251 ~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 251 KAAEVLVVDTRNGNI 265 (353)
T ss_dssp SSSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCcE
Confidence 59999999987654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-18 Score=120.54 Aligned_cols=149 Identities=11% Similarity=0.071 Sum_probs=111.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC-Cceeeeeccc-ccceEEEEEEeCCCEEEEec--CCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFS-EEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~ 76 (188)
++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|+++.|++++ .++...+|.++........+
T Consensus 47 ~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (297)
T 2ojh_A 47 PNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM 125 (297)
T ss_dssp EEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC
T ss_pred eEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe
Confidence 47999999999986 68999999998 8776666555 36789999999999999988 34556666664323344444
Q ss_pred eeccCCceeEE-eecCCCEEE-EecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~-~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~ 152 (188)
.. + ..+..+ |+|++++++ ++..++.+++|+++. +.....+..+.. .+.+++|+|++++|+.++ .++.+++|++
T Consensus 126 ~~-~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~i~~~ 202 (297)
T 2ojh_A 126 TK-N-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG-RNDGPDYSPDGRWIYFNSSRTGQMQIWRV 202 (297)
T ss_dssp CS-S-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS-CEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ec-C-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC-ccccceECCCCCEEEEEecCCCCccEEEE
Confidence 43 3 346777 899999877 677889899998643 233445555544 799999999999887666 5889999987
Q ss_pred C
Q 029743 153 D 153 (188)
Q Consensus 153 ~ 153 (188)
.
T Consensus 203 ~ 203 (297)
T 2ojh_A 203 R 203 (297)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-18 Score=129.77 Aligned_cols=151 Identities=8% Similarity=0.049 Sum_probs=123.4
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEe--CCcccccceeeec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW--GYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~ 79 (188)
+|+|++.++++++.+++|.+||..+++++..+..+.. +..++|+|+|++|++++.++.|.+||+ .+ ...+..+..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~~- 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIKI- 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEEEC-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEEec-
Confidence 4788998999999999999999999999888873333 889999999999999999999999999 54 455666653
Q ss_pred cCCceeEE-eec----CCCEEEEec-CCCeEEEEecccCeeeeecccC----------CCcceeEEEeeCCCCEE-EEEe
Q 029743 80 SPNSVDAL-LKL----DEDRVITGS-ENGLISLVGILPNRIIQPIAEH----------SEYPIESLALSHDRKFL-GSIS 142 (188)
Q Consensus 80 ~~~~v~~~-~~~----~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l-~~~~ 142 (188)
...+..+ |+| +|+++++++ .++.|.+||..+++++..+..+ .+..+..+.++|+++.+ ++..
T Consensus 221 -g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 221 -GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred -CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 4456777 899 999999988 4899999999999988777542 22258899999977654 5666
Q ss_pred CCCcEEEEeCCCcc
Q 029743 143 HDSMLKLWDLDDIL 156 (188)
Q Consensus 143 ~d~~i~iwd~~~~~ 156 (188)
.++.|.+||+.+..
T Consensus 300 ~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 300 ETGKVLLVNYKDID 313 (543)
T ss_dssp TTTEEEEEECTTSS
T ss_pred CCCeEEEEEecCCC
Confidence 78999999998743
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-18 Score=121.17 Aligned_cols=151 Identities=10% Similarity=0.013 Sum_probs=116.6
Q ss_pred CeeecccCeEEEEe------------CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC
Q 029743 1 MTFAADAMKLLGTS------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 1 l~~s~~~~~l~~~~------------~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 68 (188)
++|+|+|++|+++. .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|.+||+..
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence 46899999998886 579999999998887776664 4567889999999988887 57899999864
Q ss_pred cccccceeee-----------------------------------------------------------------ccCCc
Q 029743 69 FKDCSDRFVG-----------------------------------------------------------------LSPNS 83 (188)
Q Consensus 69 ~~~~~~~~~~-----------------------------------------------------------------~~~~~ 83 (188)
. .....+.. .+...
T Consensus 164 ~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 164 G-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp T-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred C-cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 2 22211110 01112
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
+..+ ++|+|++++++ ++.|++||+.+++.+..+..+ . .+.+++|+|++++|++++.++.|.+||+.+.....
T Consensus 243 ~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-H-SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred eeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-C-ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 3346 79999998888 689999999999888777654 3 57899999999999888899999999998876443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-18 Score=129.35 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=119.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEc--CCCceeeeecccccceEEEEEEe----CCCEEEEecC-CCeEEEEEeCCccccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNL--RKNTVQTRSEFSEEELTSVVLMK----NGRKVVCGSQ-SGTVLLYSWGYFKDCS 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~~~d~~~~~~~~ 73 (188)
++|+|+|++|++++.++.|++||+ .+++.+..+. +...+..++|+| +|+++++++. +++|.+||..+ .+++
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~ 261 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPK 261 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEE
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccc
Confidence 469999999999999999999999 7888888877 456689999999 9999998885 89999999876 4666
Q ss_pred ceeeecc-----------CCceeEE-eecCCCE-EEEecCCCeEEEEecccCeeee--ecccCCCcceeEEEeeCCCCEE
Q 029743 74 DRFVGLS-----------PNSVDAL-LKLDEDR-VITGSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 74 ~~~~~~~-----------~~~v~~~-~~~~~~~-l~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l 138 (188)
+.+.. + ...+..+ ++|++.. +++...++.|.+||..+.+.+. .+. +.. .+.+++|+|++++|
T Consensus 262 ~~i~~-~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~-~~~~~~~spdg~~l 338 (543)
T 1nir_A 262 QIVST-RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP-FLHDGGWDSSHRYF 338 (543)
T ss_dssp EEEEC-CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS-SCCCEEECTTSCEE
T ss_pred eeecc-cCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCc-CccCceECCCCCEE
Confidence 65543 2 1256677 7887664 5666788999999998765433 333 323 58899999999987
Q ss_pred EEEe-CCCcEEEEeCCCccCC
Q 029743 139 GSIS-HDSMLKLWDLDDILKG 158 (188)
Q Consensus 139 ~~~~-~d~~i~iwd~~~~~~~ 158 (188)
++++ .+++|.+||+.+++..
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~ 359 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLS 359 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEE
T ss_pred EEEecCCCeEEEEECCCCeEE
Confidence 6554 6899999999987543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-17 Score=119.86 Aligned_cols=154 Identities=9% Similarity=0.044 Sum_probs=120.7
Q ss_pred CeeecccCeEEEEe--CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+|+++++++++ .++.|.+||..+++.+..+..+...+.+++|+|+++.+++++.++.|.+||+.. +.....+..
T Consensus 146 ~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~ 224 (353)
T 3vgz_A 146 LVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKL 224 (353)
T ss_dssp EEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEc
Confidence 47899999888776 478899999999988888775666688999999999999999999999999976 344444432
Q ss_pred ---ccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeC
Q 029743 79 ---LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (188)
Q Consensus 79 ---~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~ 152 (188)
.+...+..+ ++|+|+++++++ .++.|.+||+.+++.+..+.... ...++|+|++++++++. .++.|.+||+
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 023345666 899999777665 45899999999998887776542 35799999999766555 6899999999
Q ss_pred CCccCC
Q 029743 153 DDILKG 158 (188)
Q Consensus 153 ~~~~~~ 158 (188)
.+....
T Consensus 302 ~~~~~~ 307 (353)
T 3vgz_A 302 KSYKVV 307 (353)
T ss_dssp TTTEEE
T ss_pred CCCeEE
Confidence 876543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=120.10 Aligned_cols=151 Identities=14% Similarity=0.201 Sum_probs=110.0
Q ss_pred CeeecccCeEEEEeCC-CcEEEEEcC--CCce--eeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCc--ccc
Q 029743 1 MTFAADAMKLLGTSGD-GTLSVCNLR--KNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYF--KDC 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d-~~i~i~~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~--~~~ 72 (188)
++|+|++++|++++.+ +.|.+|++. +++. +..+..+ ..+..++|+|++++|++++. ++.|.+||+... ...
T Consensus 43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 121 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 121 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence 4799999999988886 899999997 5543 3344433 37899999999998876654 889999999421 233
Q ss_pred cceeeeccCCceeEE-eecCCCEEEEec-CCCeEEEEeccc-Ceeee----ecccCCCcceeEEEeeCCCCEEEEEe-CC
Q 029743 73 SDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILP-NRIIQ----PIAEHSEYPIESLALSHDRKFLGSIS-HD 144 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 144 (188)
...+.. ...+.++ ++|+|+++++++ .++.|++||+.+ ++... .+..+.+..+..++|+|++++|++++ .+
T Consensus 122 ~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~ 199 (343)
T 1ri6_A 122 VDVVEG--LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN 199 (343)
T ss_dssp EEEECC--CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cccccC--CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC
Confidence 333333 3346666 899999888777 889999999987 54322 22222233688899999999776554 78
Q ss_pred CcEEEEeCCC
Q 029743 145 SMLKLWDLDD 154 (188)
Q Consensus 145 ~~i~iwd~~~ 154 (188)
+.|.+|++..
T Consensus 200 ~~i~~~~~~~ 209 (343)
T 1ri6_A 200 SSVDVWELKD 209 (343)
T ss_dssp TEEEEEESSC
T ss_pred CEEEEEEecC
Confidence 9999999964
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=136.10 Aligned_cols=153 Identities=15% Similarity=0.096 Sum_probs=113.4
Q ss_pred CeeecccCeEEEEeCC---------CcEEEEEcCCCcee--eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc
Q 029743 1 MTFAADAMKLLGTSGD---------GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---------~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 69 (188)
++|||||++|++++.+ +.+++||+.+++.. .....|...+..++|+|||+.|+.++. +.|++||+..
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~- 143 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG- 143 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS-
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC-
Confidence 4699999999999764 67889999988752 222244555889999999999998876 7899999875
Q ss_pred ccccceeeeccCCce------------------eEE-eecCCCEEEEecCCC----------------------------
Q 029743 70 KDCSDRFVGLSPNSV------------------DAL-LKLDEDRVITGSENG---------------------------- 102 (188)
Q Consensus 70 ~~~~~~~~~~~~~~v------------------~~~-~~~~~~~l~~~~~d~---------------------------- 102 (188)
+...+.... +...+ .++ |+|||++|++++.++
T Consensus 144 g~~~~~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 222 (723)
T 1xfd_A 144 KQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG 222 (723)
T ss_dssp SCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred CceEEEecC-CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCC
Confidence 344433332 33222 567 899999999887542
Q ss_pred ------eEEEEecccCeeeeecccCC-----CcceeEEEeeCCCCEEEEEeC----CCcEEEEeCCCcc
Q 029743 103 ------LISLVGILPNRIIQPIAEHS-----EYPIESLALSHDRKFLGSISH----DSMLKLWDLDDIL 156 (188)
Q Consensus 103 ------~v~~~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~ 156 (188)
.|++||+.+++....+..+. ...+..++|+|||++|++... +..|++||+.++.
T Consensus 223 ~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 223 SENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred CCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 79999998887655565431 236899999999998876643 3579999998765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-17 Score=116.40 Aligned_cols=148 Identities=12% Similarity=0.100 Sum_probs=113.5
Q ss_pred eeecccCe-EEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCcccc-cceeee
Q 029743 2 TFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC-SDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~-l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~-~~~~~~ 78 (188)
.|.+++++ +++...++.|++||+.+++.+..+..+...+ .++|+|+++++++++. ++.|.+||+.. +.. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL-EPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS-SSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC-CceeEEeccc
Confidence 35666555 5666778999999999998887777666667 9999999997766655 88999999976 344 556665
Q ss_pred ccCCceeEE-eecCCCEEEEecCCC---eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEE-eCCCc-EEEEeC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSM-LKLWDL 152 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~---~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~iwd~ 152 (188)
+..+..++ ++|+|++++++..++ .|.+||+.+++.+..+..+. .+.+++|+|++++|+++ ..++. |.+|++
T Consensus 82 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 82 -GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY--DAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp -CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT--TEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred -CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC--CccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 66666636 899999999666553 89999999999888776553 57899999999866655 45578 999998
Q ss_pred CC
Q 029743 153 DD 154 (188)
Q Consensus 153 ~~ 154 (188)
..
T Consensus 159 ~~ 160 (331)
T 3u4y_A 159 DA 160 (331)
T ss_dssp CT
T ss_pred CC
Confidence 74
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-18 Score=133.15 Aligned_cols=151 Identities=13% Similarity=0.066 Sum_probs=114.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc--eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|||||++|++++. +.|++||+.++. ....+..+...+..++|+|||++|++++. +.|++||+.. +...+....
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~-g~~~~~~~~ 190 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLAS-GRQMQLTAD 190 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTT-TEEEECCCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCC-CCEEEeccC
Confidence 479999999999887 999999999872 34456667788999999999999998874 5899999975 333332222
Q ss_pred ccCCc----------------eeEE-eecCCCEEEEecCCC---------------------------------eEEEEe
Q 029743 79 LSPNS----------------VDAL-LKLDEDRVITGSENG---------------------------------LISLVG 108 (188)
Q Consensus 79 ~~~~~----------------v~~~-~~~~~~~l~~~~~d~---------------------------------~v~~~d 108 (188)
+... +..+ |+|||++|++++.++ .|++||
T Consensus 191 -~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 191 -GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp -CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred -CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 2221 3556 899999999987655 788999
Q ss_pred ccc-Ceeeeecc--cCCCcceeEEEeeCCCCEEEEEeC-----CCcEEEEeCCCccC
Q 029743 109 ILP-NRIIQPIA--EHSEYPIESLALSHDRKFLGSISH-----DSMLKLWDLDDILK 157 (188)
Q Consensus 109 ~~~-~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~ 157 (188)
+.+ ++...... .+.. .+..++| |||++|+.++. +..|++||+.+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~-~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~ 324 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDI-YLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ 324 (741)
T ss_dssp SSTTCCCEEECCCSCSSE-EEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred CCCCCceEEecCCCCcce-EEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce
Confidence 988 77554432 2433 7899999 99999987653 56799999987653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-17 Score=116.89 Aligned_cols=152 Identities=10% Similarity=0.064 Sum_probs=111.8
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCce-eeeecccccceEEEEEEeCCCEEEEecCCC---eEEEEEeCCcccccce
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~ 75 (188)
++|+|+++++++++. ++.|++||+.+++. ...+..+..+..+++|+|++++++++..++ .|.+||+.. +..+..
T Consensus 45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~-~~~~~~ 123 (331)
T 3u4y_A 45 TAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK-NKFIST 123 (331)
T ss_dssp EEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT-TEEEEE
T ss_pred EEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC-CCeEEE
Confidence 479999997777666 78999999998887 666666666655599999999999655553 899999976 455555
Q ss_pred eeeccCCceeEE-eecCCCEEEEe-cCCCe-EEEEecccCeee-----eecccCCCcceeEEEeeCCCCEEEEE-eCCCc
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITG-SENGL-ISLVGILPNRII-----QPIAEHSEYPIESLALSHDRKFLGSI-SHDSM 146 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~-v~~~d~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~ 146 (188)
+.. ......+ ++|+|++++++ ..++. |.+|++.....+ ..+... . .+..++|+|++++++.+ ..++.
T Consensus 124 ~~~--~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~v~~~~~~~ 199 (331)
T 3u4y_A 124 IPI--PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG-T-RPFNITFTPDGNFAFVANLIGNS 199 (331)
T ss_dssp EEC--CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS-S-SEEEEEECTTSSEEEEEETTTTE
T ss_pred EEC--CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC-C-CccceEECCCCCEEEEEeCCCCe
Confidence 553 3445677 89999866555 45577 999998753322 222222 2 57899999999976554 46899
Q ss_pred EEEEeCCCccC
Q 029743 147 LKLWDLDDILK 157 (188)
Q Consensus 147 i~iwd~~~~~~ 157 (188)
|.+||+.+...
T Consensus 200 v~v~d~~~~~~ 210 (331)
T 3u4y_A 200 IGILETQNPEN 210 (331)
T ss_dssp EEEEECSSTTS
T ss_pred EEEEECCCCcc
Confidence 99999987665
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.8e-18 Score=136.98 Aligned_cols=149 Identities=12% Similarity=0.131 Sum_probs=123.6
Q ss_pred Ceee-cccCeEEEEeCCCcEEEEEcCCCceeeeeccccc-ceEEEEEEeCCCEEEEecCCCeEE-EEEeCCcccccceee
Q 029743 1 MTFA-ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCGSQSGTVL-LYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-~~d~~~~~~~~~~~~ 77 (188)
++|| |+|++|++++ ++.|++|++..+.... +..|.. .+..++|+ +|+.|++++.+..+. +|++.. +. ...+.
T Consensus 301 ~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~-~~~l~ 375 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GK-AEKFE 375 (1045)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CC-EEECC
T ss_pred eeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CC-ceEec
Confidence 4689 9999999988 6899999998876543 556666 89999999 999999988888888 889864 22 33444
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC----------c
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS----------M 146 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------~ 146 (188)
+ +...+..+ |+|+|++|++++.++.|++||+.+++....+..|.. .+..++|+|||++|++++.++ .
T Consensus 376 ~-~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~-~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~ 453 (1045)
T 1k32_A 376 E-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQA 453 (1045)
T ss_dssp C-CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred C-CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC-CccceEECCCCCeEEEEecCccccccCCCCCe
Confidence 6 77788888 899999999999999999999999988777767755 789999999999998887644 8
Q ss_pred EEEEeCCCcc
Q 029743 147 LKLWDLDDIL 156 (188)
Q Consensus 147 i~iwd~~~~~ 156 (188)
|++||+.+..
T Consensus 454 i~l~d~~~g~ 463 (1045)
T 1k32_A 454 IHVYDMEGRK 463 (1045)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCc
Confidence 9999998765
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.7e-18 Score=132.31 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=102.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeeccccc---ceEEEEEEeCCCEEEEecC---------CCeEEEEEeCC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGY 68 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~ 68 (188)
++|+|+|+++++ +.|+.|++||+.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+..
T Consensus 21 ~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 479999965555 4689999999999988766665543 3899999999999998876 68999999975
Q ss_pred ccccc--ceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-ccCCC----------------cceeE
Q 029743 69 FKDCS--DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSE----------------YPIES 128 (188)
Q Consensus 69 ~~~~~--~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-~~~~~----------------~~v~~ 128 (188)
+..+ ..+ ...+..+ |+|||+.|+.+. ++.|++|++.+++..... .++.. ....+
T Consensus 100 -g~~~~~~~l----~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 100 -GEFVRGNEL----PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp -TEECCSSCC----CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred -Cccccceec----CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 3331 222 2345666 899999999885 679999999887765432 22211 01148
Q ss_pred EEeeCCCCEEEEEeCC
Q 029743 129 LALSHDRKFLGSISHD 144 (188)
Q Consensus 129 ~~~~~~~~~l~~~~~d 144 (188)
++|+|||++|++++.|
T Consensus 174 ~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFN 189 (719)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred EEECCCCCEEEEEEEC
Confidence 9999999999988755
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=128.09 Aligned_cols=143 Identities=6% Similarity=-0.033 Sum_probs=112.9
Q ss_pred eeecccCeE-EEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC----CeEEEEEeCCccccccee
Q 029743 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 2 ~~s~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~ 76 (188)
+|+|+|+.+ ++.+.++.+.+||+.+++.......+ . .+++|+|||+.|++++.+ ..|++||+.. +. ...+
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~-~~~l 190 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GG-LRVF 190 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CC-CEEE
T ss_pred eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CC-ceEe
Confidence 688888653 33444566669999988765544433 3 889999999999988776 7899999875 23 4466
Q ss_pred eeccCCceeEE-eecCCCEEEEecCCC--eEEEEecccCeeeeecccCCCcceeEEE--------eeCCCCEEEEEeCCC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVITGSENG--LISLVGILPNRIIQPIAEHSEYPIESLA--------LSHDRKFLGSISHDS 145 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~d~ 145 (188)
.. +...+..+ |+|||+.|+++..++ .|++||+.+++.. .+..+.. .+..++ |+|||..+++++.++
T Consensus 191 ~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g 267 (582)
T 3o4h_A 191 DS-GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREG 267 (582)
T ss_dssp CC-SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred ec-CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence 77 77778888 899999999888888 8999999988877 6666644 566677 999998888999999
Q ss_pred cEEEEeC
Q 029743 146 MLKLWDL 152 (188)
Q Consensus 146 ~i~iwd~ 152 (188)
.+++|++
T Consensus 268 ~~~l~~~ 274 (582)
T 3o4h_A 268 RSAVFID 274 (582)
T ss_dssp EEEEEET
T ss_pred cEEEEEE
Confidence 9999999
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.7e-17 Score=116.30 Aligned_cols=152 Identities=11% Similarity=0.101 Sum_probs=107.4
Q ss_pred CeeecccCeEEEEeC---CCcEEEEEcCCCc--eeeeecccccceEEEEEEeCCCEEEEec-CCCeEEEEEeCCcccc--
Q 029743 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDC-- 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~---d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~-- 72 (188)
++|+|+|+ |++++. ++.|++|++..+. .+..+..+...+..++|+|++++|++++ .++.+.+|++...+..
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL 123 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence 47899999 665554 5899999997765 3334445677889999999999888877 6789999999642221
Q ss_pred cceeeecc---------CCceeEE-eecCCCEEEEecCCCeEEEEecc-cCeee--eecccCCCcceeEEEeeCCCCEEE
Q 029743 73 SDRFVGLS---------PNSVDAL-LKLDEDRVITGSENGLISLVGIL-PNRII--QPIAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 73 ~~~~~~~~---------~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
+..+.. . ...+.++ ++|+|+++++...++.|++|++. +++.. ..+..+.+..+..++|+|+|++|+
T Consensus 124 ~~~~~~-~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~ 202 (347)
T 3hfq_A 124 TDTVQH-SGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAF 202 (347)
T ss_dssp EEEEEC-CCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred cceeec-CCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEE
Confidence 222211 1 1136667 89999966677778899999998 45432 222222222577899999999766
Q ss_pred E-EeCCCcEEEEeCCC
Q 029743 140 S-ISHDSMLKLWDLDD 154 (188)
Q Consensus 140 ~-~~~d~~i~iwd~~~ 154 (188)
+ ...++.|.+|++..
T Consensus 203 v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 203 LAGELSSQIASLKYDT 218 (347)
T ss_dssp EEETTTTEEEEEEEET
T ss_pred EEeCCCCEEEEEEecC
Confidence 5 45678999999874
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-17 Score=118.33 Aligned_cols=149 Identities=8% Similarity=0.006 Sum_probs=110.3
Q ss_pred CeeecccCeEEEEeCC------------CcEEEEEcCCCcee---eeecccccceEEEEEEeCCCEEEEecCCCeEEEEE
Q 029743 1 MTFAADAMKLLGTSGD------------GTLSVCNLRKNTVQ---TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d------------~~i~i~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 65 (188)
++|+|+|++|++++.+ +.|.+||+.+++.. ..+. +...+.+++|+|+++ +++++. .|.+||
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d 172 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMD 172 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEEC
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEe
Confidence 4799999999998865 89999999875433 2333 344688999999999 555544 499999
Q ss_pred eCCcccccceeeeccC----------------------------------------------------------------
Q 029743 66 WGYFKDCSDRFVGLSP---------------------------------------------------------------- 81 (188)
Q Consensus 66 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 81 (188)
+.. ++....+.. ..
T Consensus 173 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
T 1jmx_B 173 VKT-GKYTVALPL-RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 250 (349)
T ss_dssp TTT-CCEEEEECS-TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred CCC-Cceeccccc-cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence 865 233332221 10
Q ss_pred ----CceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 82 ----NSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 82 ----~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
..+..+ ++| ++++++++ ++.|.+||+.+++.+..+... . .+.+++|+|++++|++++.++.|.+||+++.
T Consensus 251 ~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 251 ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-H-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-C-CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 122334 568 99999888 889999999999887777644 3 5789999999999988888999999999876
Q ss_pred cCCC
Q 029743 156 LKGS 159 (188)
Q Consensus 156 ~~~~ 159 (188)
+...
T Consensus 327 ~~~~ 330 (349)
T 1jmx_B 327 EKVK 330 (349)
T ss_dssp EEEE
T ss_pred ceee
Confidence 6443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-17 Score=132.81 Aligned_cols=147 Identities=11% Similarity=0.022 Sum_probs=122.2
Q ss_pred eeecccCeEEEEeCCCcEE-EEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLS-VCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~-i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+|+ +|+.|++++.+..+. +|++..++.... ..|...+..++|+|+|+.|++++.++.|++||+.+ +........ +
T Consensus 344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~-~ 419 (1045)
T 1k32_A 344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERS-R 419 (1045)
T ss_dssp CSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-S
T ss_pred eEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccC-C
Confidence 578 999999998888888 899887765443 37778899999999999999999999999999975 455555556 7
Q ss_pred CCceeEE-eecCCCEEEEecCCC----------eEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 81 PNSVDAL-LKLDEDRVITGSENG----------LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~----------~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
...+..+ |+|+|++|++++.++ .|++||+.+++ ...+..+.. .+..++|+|+|++|+.++.++...+
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~-~~~~~~~spdG~~l~~~s~~~~~~~ 497 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENS-HDYAPAFDADSKNLYYLSYRSLDPS 497 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSS-BEEEEEECTTSCEEEEEESCCCCCE
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCc-ccCCceEcCCCCEEEEEecccCCcC
Confidence 7888888 899999998887644 89999999887 566666654 6889999999999999998888888
Q ss_pred EeCCC
Q 029743 150 WDLDD 154 (188)
Q Consensus 150 wd~~~ 154 (188)
|+...
T Consensus 498 ~~~~~ 502 (1045)
T 1k32_A 498 PDRVV 502 (1045)
T ss_dssp ECSSS
T ss_pred cchhc
Confidence 87653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=127.79 Aligned_cols=149 Identities=10% Similarity=0.045 Sum_probs=111.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc----cccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~ 76 (188)
++|||| +.++.+. ++.|++||+.+++.... ..+...+.+++|+|+|+.|+++ .++.|++|++... +...+..
T Consensus 87 ~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~ 162 (706)
T 2z3z_A 87 TLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT 162 (706)
T ss_dssp EEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC
T ss_pred EEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec
Confidence 368999 6666654 49999999998876543 4466778999999999999885 6789999999751 2333322
Q ss_pred eeccCCc--------------eeEE-eecCCCEEEEec---------------------------------CCCeEEEEe
Q 029743 77 VGLSPNS--------------VDAL-LKLDEDRVITGS---------------------------------ENGLISLVG 108 (188)
Q Consensus 77 ~~~~~~~--------------v~~~-~~~~~~~l~~~~---------------------------------~d~~v~~~d 108 (188)
.. +... +.++ |+|||++|++++ .+..|++||
T Consensus 163 ~~-~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 163 ID-GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp SC-CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred cC-CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 22 2221 3566 899999999887 446799999
Q ss_pred cccCeeeeecc--cCCCcceeEEEeeCCCCEEEEEeCCC-----cEEEEeCCCc
Q 029743 109 ILPNRIIQPIA--EHSEYPIESLALSHDRKFLGSISHDS-----MLKLWDLDDI 155 (188)
Q Consensus 109 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~ 155 (188)
+.+++...... .+.. .+..++|+|||++|++++.++ .|++||+.++
T Consensus 242 ~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 242 LATGKTVYLQTGEPKEK-FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp TTTTEEEECCCCSCTTC-EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred CCCCceEeeccCCCCce-eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 99887654442 3333 689999999999999887665 8999999876
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-16 Score=113.25 Aligned_cols=150 Identities=9% Similarity=0.141 Sum_probs=104.1
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCc-------ee------eeecccccceEEEEEEeCCCEEEEec-CCCeEEEEE
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNT-------VQ------TRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYS 65 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~-------~~------~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d 65 (188)
++|+|+|++|++++. ++.|++|++.... .. .....+...+..++|+|+|+++++++ .++.|.+|+
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence 478999997766654 7899999887533 11 11123445678999999999887766 688999999
Q ss_pred eCCcccc--cceeee--ccCCceeEE-eecCCCEEEEecC--CCeEEEEecc--cCe--eeeecccCCCcceeEEEeeCC
Q 029743 66 WGYFKDC--SDRFVG--LSPNSVDAL-LKLDEDRVITGSE--NGLISLVGIL--PNR--IIQPIAEHSEYPIESLALSHD 134 (188)
Q Consensus 66 ~~~~~~~--~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~--d~~v~~~d~~--~~~--~~~~~~~~~~~~v~~~~~~~~ 134 (188)
+.. +.. +..+.. .+......+ |+|+|++|+++.. ++.|.+|++. +++ .+..+.. +..+..++|+|+
T Consensus 240 ~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spd 316 (361)
T 3scy_A 240 YAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPN 316 (361)
T ss_dssp EET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTT
T ss_pred ecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCC
Confidence 974 222 222211 022335577 8999998877665 4899999986 344 3444443 226789999999
Q ss_pred CCEEEEEe-CCCcEEEEeCC
Q 029743 135 RKFLGSIS-HDSMLKLWDLD 153 (188)
Q Consensus 135 ~~~l~~~~-~d~~i~iwd~~ 153 (188)
+++|++++ .++.|.+|++.
T Consensus 317 g~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 317 GKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SCEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEEE
Confidence 99888877 67899997554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-16 Score=111.99 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=104.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcC-CCceee--eecc-cccceEEEEEEeCCCEEEE-ecCCCeEEEEEeCCc-ccc--
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLR-KNTVQT--RSEF-SEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYF-KDC-- 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~-~~~-- 72 (188)
++|+|+|+++++...++.|++|++. +++... .+.. ....+..++|+|+|+++++ ...++.+.+|+++.. +..
T Consensus 146 ~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 146 TDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 4789999965665667899999998 454322 1222 2336788999999996665 566789999998741 221
Q ss_pred cceeeeccC------CceeEE-eecCCCEEE-EecCCCeEEEEeccc-C--eeeeecccCCCcceeEEEeeCCCCEEEEE
Q 029743 73 SDRFVGLSP------NSVDAL-LKLDEDRVI-TGSENGLISLVGILP-N--RIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 73 ~~~~~~~~~------~~v~~~-~~~~~~~l~-~~~~d~~v~~~d~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
+..+.. .. ..+..+ |+|+|++|+ +...++.|.+|++.. + +.+..+..+.. .+..++|+|++++|+++
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 226 LGIVKT-IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp EEEEES-SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEE
T ss_pred eeeeee-cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEE
Confidence 122221 11 236667 899999875 455689999999873 2 44555555433 57899999999988877
Q ss_pred eC-CCcEEEEeCC
Q 029743 142 SH-DSMLKLWDLD 153 (188)
Q Consensus 142 ~~-d~~i~iwd~~ 153 (188)
+. ++.|.+|++.
T Consensus 304 ~~~~~~v~v~~~d 316 (347)
T 3hfq_A 304 NQNTDNATLYARD 316 (347)
T ss_dssp ETTTTEEEEEEEC
T ss_pred EcCCCcEEEEEEe
Confidence 75 4899999553
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=128.77 Aligned_cols=150 Identities=13% Similarity=0.105 Sum_probs=111.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC-----Cceeeeecccccc--------------eEEEEEEeCCCEEEEec-----
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK-----NTVQTRSEFSEEE--------------LTSVVLMKNGRKVVCGS----- 56 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~----- 56 (188)
++|||||++|+++ .++.|++|++.+ ++.......+... +.+++|+|||++|++++
T Consensus 126 ~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~ 204 (706)
T 2z3z_A 126 LDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSM 204 (706)
T ss_dssp CEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTT
T ss_pred CcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCC
Confidence 4799999999995 679999999998 7766544433332 48999999999999887
Q ss_pred ----------------------------CCCeEEEEEeCCccccccee--eeccCCceeEE-eecCCCEEEEecCCC---
Q 029743 57 ----------------------------QSGTVLLYSWGYFKDCSDRF--VGLSPNSVDAL-LKLDEDRVITGSENG--- 102 (188)
Q Consensus 57 ----------------------------~d~~i~~~d~~~~~~~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~~d~--- 102 (188)
.+..|++||+... ...... .. +...+..+ |+|+|++|++++.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~ 282 (706)
T 2z3z_A 205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-KTVYLQTGEP-KEKFLTNLSWSPDENILYVAEVNRAQN 282 (706)
T ss_dssp SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT-EEEECCCCSC-TTCEEEEEEECTTSSEEEEEEECTTSC
T ss_pred CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC-ceEeeccCCC-CceeEeeEEEECCCCEEEEEEeCCCCC
Confidence 3467999999753 322222 13 55667788 899999999877665
Q ss_pred --eEEEEecccCeeeeecc-cCCCc---ceeEEEeeC--CCCEEEEEeCCCcEEEEeCC
Q 029743 103 --LISLVGILPNRIIQPIA-EHSEY---PIESLALSH--DRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 103 --~v~~~d~~~~~~~~~~~-~~~~~---~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~ 153 (188)
.|++||+.+++....+. ..... .+..++|+| +|+++++++.++.+++|.+.
T Consensus 283 ~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 283 ECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred eeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 89999999883333332 21111 246789999 99999999899999998775
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-16 Score=114.12 Aligned_cols=151 Identities=10% Similarity=0.021 Sum_probs=112.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccc-cceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++++++++++++++.++.|++||+.+++.+..+..+. ..+..++|+|+++.++ +...++.|.+||+.+ +.....+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEc
Confidence 4678889999999999999999999998887776432 2578999999998665 555788999999976 344444442
Q ss_pred cc-----CCceeEE-eecCCCEEEEecCC------------CeEEEEecccCeee---eecccCCCcceeEEEeeCCCCE
Q 029743 79 LS-----PNSVDAL-LKLDEDRVITGSEN------------GLISLVGILPNRII---QPIAEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 79 ~~-----~~~v~~~-~~~~~~~l~~~~~d------------~~v~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~ 137 (188)
.+ ...+..+ ++|+|+++++++.+ +.|.+||+.+++.. ..+..+ . .+.+++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~-~~~~~~~s~dg~- 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-R-QVYLMRAADDGS- 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-S-SCCCEEECTTSC-
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-C-cccceeECCCCc-
Confidence 02 1225666 89999999988865 89999999885433 333333 3 588999999999
Q ss_pred EEEEeCCCcEEEEeCCCccC
Q 029743 138 LGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~ 157 (188)
+++++ +.|.+||+.+...
T Consensus 161 l~~~~--~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKY 178 (349)
T ss_dssp EEEES--SSEEEECTTTCCE
T ss_pred EEEcc--CcEEEEeCCCCce
Confidence 55554 3499999987654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=114.07 Aligned_cols=142 Identities=16% Similarity=0.186 Sum_probs=104.9
Q ss_pred CeEEEE-eCCCcEEEEEcC-CCc--eeeeecccccceEEEEEEeCCCEEEEecCC-CeEEEEEeCCc-cc--ccceeeec
Q 029743 8 MKLLGT-SGDGTLSVCNLR-KNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYF-KD--CSDRFVGL 79 (188)
Q Consensus 8 ~~l~~~-~~d~~i~i~~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~-~~--~~~~~~~~ 79 (188)
++++++ +.++.|++|++. ++. .+..+ .+...+.+++|+|++++|++++.+ +.|.+|+++.. +. .+..+..
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~- 82 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL- 82 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-
Confidence 344444 779999999995 332 23333 467789999999999988888876 89999999721 22 2233333
Q ss_pred cCCceeEE-eecCCCEEEEec-CCCeEEEEec---ccCeeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGS-ENGLISLVGI---LPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (188)
+. .+..+ ++|+|+++++++ .++.|.+||+ ...+....+..+ . .+.+++|+|++++|++++ .++.|.+||+.
T Consensus 83 ~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 83 PG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-D-GCHSANISPDNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp SS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-T-TBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-C-CceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence 33 66777 899999876665 5889999999 444555555555 3 588999999999888777 88999999998
Q ss_pred C
Q 029743 154 D 154 (188)
Q Consensus 154 ~ 154 (188)
+
T Consensus 160 ~ 160 (343)
T 1ri6_A 160 D 160 (343)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=130.51 Aligned_cols=154 Identities=14% Similarity=0.029 Sum_probs=108.4
Q ss_pred CeeecccCeEEEEeC---------CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSG---------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~---------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
++|||||++|++++. ++.|++||+.+++.+.... ....+..++|+|||+.|+.+. ++.|++|++..+ .
T Consensus 65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g-~ 141 (719)
T 1z68_A 65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD-P 141 (719)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS-C
T ss_pred EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCC-C
Confidence 369999999998876 6899999999887631111 124688999999999999885 679999999753 3
Q ss_pred cccee-eeccCCce-----------------eEE-eecCCCEEEEecCCC------------------------------
Q 029743 72 CSDRF-VGLSPNSV-----------------DAL-LKLDEDRVITGSENG------------------------------ 102 (188)
Q Consensus 72 ~~~~~-~~~~~~~v-----------------~~~-~~~~~~~l~~~~~d~------------------------------ 102 (188)
..+.. .+ +...+ .++ |+|||++|++++.+.
T Consensus 142 ~~~l~~~~-~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~ 220 (719)
T 1z68_A 142 PFQITFNG-RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK 220 (719)
T ss_dssp CEECCCCC-BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred cEEEecCC-CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence 32221 12 22111 356 899999999887542
Q ss_pred ----eEEEEecccCeee--------eecccCCCcceeEEEeeCCCCEEEEEeCC----CcEEEEe----CCCccCCC
Q 029743 103 ----LISLVGILPNRII--------QPIAEHSEYPIESLALSHDRKFLGSISHD----SMLKLWD----LDDILKGS 159 (188)
Q Consensus 103 ----~v~~~d~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd----~~~~~~~~ 159 (188)
.|++||+.+++.. ..+.++.. .+..++|+||++.+++.... ..|.+|| +.++....
T Consensus 221 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 221 NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCeeEEEEEECCCCCccceeEccCCccCCCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 7889999887643 12334544 68999999998777664432 2488899 76655443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-17 Score=124.10 Aligned_cols=151 Identities=10% Similarity=-0.013 Sum_probs=102.7
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC---CCeEEEEEeCC--c-----
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGY--F----- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~--~----- 69 (188)
++|+|||++||+++. ++++.||++..++..+....+...+..++|+|+ +.+++++. +....+|.++. .
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~ 105 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR 105 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE
T ss_pred eecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccc
Confidence 478999999999887 999999998766554333222245666666666 45554443 23333433321 1
Q ss_pred ------------------------------------ccccceeeeccCCceeEE-eecCCCEEEEecCC----CeEEEEe
Q 029743 70 ------------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN----GLISLVG 108 (188)
Q Consensus 70 ------------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d----~~v~~~d 108 (188)
+.. ..+.. +.. .++ |+|||+++++++.+ +.|++||
T Consensus 106 l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~-~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d 181 (582)
T 3o4h_A 106 LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL-RELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN 181 (582)
T ss_dssp CTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-EEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred ccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE-EEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence 111 11111 111 455 78999999988766 7799999
Q ss_pred cccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC--cEEEEeCCCccCC
Q 029743 109 ILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS--MLKLWDLDDILKG 158 (188)
Q Consensus 109 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~ 158 (188)
+.+++.. .+..+.+ .+..++|+|||++|+++..++ .|++||+.+....
T Consensus 182 ~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 182 LSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp TTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred CCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 9887765 5666655 789999999999999887888 8999999876654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-16 Score=110.65 Aligned_cols=145 Identities=14% Similarity=0.057 Sum_probs=112.3
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeeccccc--ceEEEEEEeCCCEE-EEecCCCeEEEEEeCCcccccceeeecc----
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE--ELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLS---- 80 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~---- 80 (188)
+++++++.++.|++||+.+++.+..+..... .+..++|+|+++.+ +++..++.|.+||+.+ +..+..+...+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCcccc
Confidence 4788999999999999999988877763221 57899999999766 4556678999999976 45554444201
Q ss_pred CCceeEE-eecCCCEEEEec------------CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcE
Q 029743 81 PNSVDAL-LKLDEDRVITGS------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~------------~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 147 (188)
...+..+ ++|+|++++++. .++.|.+||+.+++.+..+... . .+.+++|+|++++|+++ ++.|
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-R-QITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-S-SCCCEEECTTSSCEEEE--SSSE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-C-CcceeEECCCCCEEEEe--CCeE
Confidence 1145566 899999988886 5789999999998887777654 3 57889999999988877 6889
Q ss_pred EEEeCCCccC
Q 029743 148 KLWDLDDILK 157 (188)
Q Consensus 148 ~iwd~~~~~~ 157 (188)
++||+.+...
T Consensus 157 ~~~d~~~~~~ 166 (337)
T 1pby_B 157 HVMDPEAGTL 166 (337)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCcE
Confidence 9999987654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-16 Score=113.74 Aligned_cols=151 Identities=9% Similarity=0.118 Sum_probs=107.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcC-CCceeeeeccc-ccceEEEEEEeCCCE--EEEec-------------CCCeEEE
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLR-KNTVQTRSEFS-EEELTSVVLMKNGRK--VVCGS-------------QSGTVLL 63 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~d~~i~~ 63 (188)
++|+|+|++|++++.+ .|.+|++. +++........ .+.+..++|+|+|+. +++++ .++.+.+
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v 123 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence 4789999999998887 99999997 77654432211 123556889999984 45553 6889999
Q ss_pred EEeCCcccccceeee---ccCCceeEE-eecCCCEEEEec-CCCeEEEEecc-cCeee--eecc--cCCCcceeEEEeeC
Q 029743 64 YSWGYFKDCSDRFVG---LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGIL-PNRII--QPIA--EHSEYPIESLALSH 133 (188)
Q Consensus 64 ~d~~~~~~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~-~~~~~--~~~~--~~~~~~v~~~~~~~ 133 (188)
|++...+.....+.. .+...+.++ ++|+|++++++. .++.|++|++. +++.. ..+. .+.. .+..++|+|
T Consensus 124 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~-~p~~~~~sp 202 (365)
T 1jof_A 124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD-HPRWVAMHP 202 (365)
T ss_dssp EEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC-CEEEEEECT
T ss_pred EccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC-CCCEeEECC
Confidence 999743443333321 034567777 899999888765 46799999998 66543 2333 2223 588999999
Q ss_pred CCCEEEEEeC-CCcEEEEeCC
Q 029743 134 DRKFLGSISH-DSMLKLWDLD 153 (188)
Q Consensus 134 ~~~~l~~~~~-d~~i~iwd~~ 153 (188)
+|++|++++. ++.|.+|++.
T Consensus 203 dg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 203 TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEEEe
Confidence 9999887764 6899999765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-16 Score=123.49 Aligned_cols=137 Identities=12% Similarity=0.040 Sum_probs=102.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccc-----eEEEEEEeCCCEEEEecCC---------CeEEEEEe
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-----LTSVVLMKNGRKVVCGSQS---------GTVLLYSW 66 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~i~~~d~ 66 (188)
++|+|||++++++ |++|++||+.+++....+.+|... ...+.|||||++|+.++.+ +.+.+||+
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred cEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 4799999988886 899999999999887777766533 2448899999999988875 56779999
Q ss_pred CCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec-ccCCCc----------------ceeE
Q 029743 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEY----------------PIES 128 (188)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-~~~~~~----------------~v~~ 128 (188)
.+ ++ ...+.. +...+... |||||+.|+.+. ++.|++|++.++...+.. .++... ....
T Consensus 100 ~~-~~-~~~l~~-~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 100 NK-RQ-LITEER-IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp TT-TE-ECCSSC-CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred CC-Cc-EEEccc-CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence 76 33 334555 66677777 899999998884 678999999887754322 222110 1134
Q ss_pred EEeeCCCCEEEEEeC
Q 029743 129 LALSHDRKFLGSISH 143 (188)
Q Consensus 129 ~~~~~~~~~l~~~~~ 143 (188)
+.|+|||++|+.++.
T Consensus 176 ~~wSpDg~~la~~~~ 190 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQF 190 (740)
T ss_dssp EEECTTSSEEEEEEE
T ss_pred eEECCCCCEEEEEEE
Confidence 899999999988753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=118.87 Aligned_cols=152 Identities=12% Similarity=0.036 Sum_probs=111.0
Q ss_pred CeeecccCeEEEEeCC----------CcEEEEEcCC------Cceeeeec-ccccceEEEEEEeCCCEEEEecCC-----
Q 029743 1 MTFAADAMKLLGTSGD----------GTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQS----- 58 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d----------~~i~i~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d----- 58 (188)
++|||||+.|++++.+ ..|++|++.+ ++.. .+. .+...+..++|+|||++|+.++.+
T Consensus 135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCT
T ss_pred cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCC
Confidence 3799999999998876 5899999987 5543 444 456778899999999999877754
Q ss_pred ---CeEEEEEeCCcc---cccceeeeccCCceeEE-eecCCCEEEEecCCC--eEEEEecccCeeeeecccCCCc-----
Q 029743 59 ---GTVLLYSWGYFK---DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG--LISLVGILPNRIIQPIAEHSEY----- 124 (188)
Q Consensus 59 ---~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~--~v~~~d~~~~~~~~~~~~~~~~----- 124 (188)
..|++||+...+ ........ +...+..+ |+|+|++++++..++ .|++||+.+++.......+...
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w 292 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLW 292 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCC
T ss_pred CCCcEEEEEEECCCCcccccEEeCCC-CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccc
Confidence 379999997323 33333333 46777888 899999888887777 6777777666655444333221
Q ss_pred --ceeEEEeeCCCCEEEEEeCCCcEEEE--eCCCc
Q 029743 125 --PIESLALSHDRKFLGSISHDSMLKLW--DLDDI 155 (188)
Q Consensus 125 --~v~~~~~~~~~~~l~~~~~d~~i~iw--d~~~~ 155 (188)
.+..++|+|++++++++.. +.+++| |+.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 1567899999999999888 999999 55543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-15 Score=108.89 Aligned_cols=152 Identities=11% Similarity=0.030 Sum_probs=112.7
Q ss_pred eeecccCeEEEEeC-CC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGTSG-DG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
+|||||++|++++. ++ .|++||+.+++.......+...+..+.|+|+++.|+.++.++.+++||+.. ++.......
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-g~~~~~~~~ 120 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT-LEENVVYQV 120 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEEC
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC-Ccceeeeec
Confidence 69999999998887 56 488889998888776666666666788999999999999999999999976 344444443
Q ss_pred ccCCceeEE---eecCCCEEEEe----------------------cCCCeEEEEecccCeeeeecccCCCcceeEEEeeC
Q 029743 79 LSPNSVDAL---LKLDEDRVITG----------------------SENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 79 ~~~~~v~~~---~~~~~~~l~~~----------------------~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 133 (188)
+...+... ++|++++++.. ..+..|++||+.+++..... .+.. .+..++|+|
T Consensus 121 -~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~-~~~~~~~sp 197 (388)
T 3pe7_A 121 -PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQ-WLGHPIYRP 197 (388)
T ss_dssp -CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESS-CEEEEEEET
T ss_pred -hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCc-cccccEECC
Confidence 44433322 48999988742 24467999999988755443 3434 689999999
Q ss_pred -CCCEEEEEeCC------CcEEEEeCCCccC
Q 029743 134 -DRKFLGSISHD------SMLKLWDLDDILK 157 (188)
Q Consensus 134 -~~~~l~~~~~d------~~i~iwd~~~~~~ 157 (188)
+++.|+....+ ..|.++|+.....
T Consensus 198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (388)
T 3pe7_A 198 YDDSTVAFCHEGPHDLVDARMWLINEDGTNM 228 (388)
T ss_dssp TEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred CCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence 99988877653 3788888876543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-14 Score=106.15 Aligned_cols=153 Identities=8% Similarity=-0.001 Sum_probs=104.0
Q ss_pred CeeecccCe--EEEEe-------------CCCcEEEEEcC-CCceeeeec----ccccceEEEEEEeCCCEEEEecC-CC
Q 029743 1 MTFAADAMK--LLGTS-------------GDGTLSVCNLR-KNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQ-SG 59 (188)
Q Consensus 1 l~~s~~~~~--l~~~~-------------~d~~i~i~~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-d~ 59 (188)
++|+|+|++ ++++. .++.+.+|++. .++....+. .+...+.+++|+|+|+++++++. ++
T Consensus 88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 167 (365)
T 1jof_A 88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN 167 (365)
T ss_dssp GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCC
Confidence 468999994 44553 68899999997 465543333 24567899999999998887654 67
Q ss_pred eEEEEEeCCcccc--cceeee-ccCCceeEE-eecCCCEEEEec-CCCeEEEEecc--cCeee------eecccC-CC-c
Q 029743 60 TVLLYSWGYFKDC--SDRFVG-LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGIL--PNRII------QPIAEH-SE-Y 124 (188)
Q Consensus 60 ~i~~~d~~~~~~~--~~~~~~-~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~--~~~~~------~~~~~~-~~-~ 124 (188)
.|++|++...+.. +..+.. .+...+..+ |+|+|+++++++ .++.|.+|++. +++.. ..+... .+ .
T Consensus 168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence 9999999721222 122221 024457777 899999988776 47899999765 45432 122211 01 1
Q ss_pred -------ceeEEE-eeCCCCEEEEEeCC-C-----cEEEEeCC
Q 029743 125 -------PIESLA-LSHDRKFLGSISHD-S-----MLKLWDLD 153 (188)
Q Consensus 125 -------~v~~~~-~~~~~~~l~~~~~d-~-----~i~iwd~~ 153 (188)
.+..++ |+|||++|+++..+ . .|.+|++.
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 378899 99999998766543 2 89999986
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-14 Score=104.44 Aligned_cols=152 Identities=14% Similarity=0.155 Sum_probs=102.6
Q ss_pred CeeecccCeEEEEeCC----CcEEEEEcCC--Cce--eeeecccccceEEEEEEeCCCEEEEec-CCCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSGD----GTLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d----~~i~i~~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~ 71 (188)
++|+|+|++|++++.+ +.|.+|++.. ++. +.....+......+++ ++++|++++ .++.+.+|++...+.
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~ 132 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA 132 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc
Confidence 4799999999999875 7999998865 433 2233334556677777 788777665 578999999975332
Q ss_pred ccce--eeecc-----------CCceeEE-eecCCCEEEEec-CCCeEEEEecccCee------e------eecccCCCc
Q 029743 72 CSDR--FVGLS-----------PNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRI------I------QPIAEHSEY 124 (188)
Q Consensus 72 ~~~~--~~~~~-----------~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~------~------~~~~~~~~~ 124 (188)
.... ... + ...+.++ ++|+|+++++++ .++.|++|++..... + .......+.
T Consensus 133 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 211 (361)
T 3scy_A 133 LLPASDVIE-FKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGS 211 (361)
T ss_dssp BCSCSEEEE-CCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTC
T ss_pred CcccceeEE-ccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCC
Confidence 2111 111 1 1223667 899999766554 588999998875331 1 111112122
Q ss_pred ceeEEEeeCCCCEEEEEe-CCCcEEEEeCCCc
Q 029743 125 PIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (188)
Q Consensus 125 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (188)
.+..++|+|++++|++++ .++.|.+|++.+.
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 578999999999887776 6899999998754
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=119.85 Aligned_cols=150 Identities=11% Similarity=0.063 Sum_probs=106.8
Q ss_pred eeecccCeEEEEeCC---------CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc
Q 029743 2 TFAADAMKLLGTSGD---------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d---------~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
+|||||++|+.++.+ +.+++||+.+++.. .+..+...+..++|||||+.|+.+. ++.|++|++..+ ..
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~-~~ 144 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL-PS 144 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS-CC
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC-ce
Confidence 579999999998875 56679999998765 4556778899999999999998874 679999998753 32
Q ss_pred cc-eeeeccCCce-----------------eEE-eecCCCEEEEecCCC-------------------------------
Q 029743 73 SD-RFVGLSPNSV-----------------DAL-LKLDEDRVITGSENG------------------------------- 102 (188)
Q Consensus 73 ~~-~~~~~~~~~v-----------------~~~-~~~~~~~l~~~~~d~------------------------------- 102 (188)
.+ +..+ +...+ ..+ |||||++|+..+.|.
T Consensus 145 ~~lt~~g-~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 145 YRITWTG-KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp EECCSCC-BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred EEEcCCC-CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 22 1222 22111 235 899999998874221
Q ss_pred -----eEEEEeccc---Ce--eeeecc------cCCCcceeEEEeeCCCCEEEEEeC----CCcEEEEeCCCcc
Q 029743 103 -----LISLVGILP---NR--IIQPIA------EHSEYPIESLALSHDRKFLGSISH----DSMLKLWDLDDIL 156 (188)
Q Consensus 103 -----~v~~~d~~~---~~--~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~ 156 (188)
.|++||+.+ ++ ....+. ++.. .+..++|+|||+.++.... +..|.+||+.++.
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH-YLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE-EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCe-EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 478899988 63 222333 2433 6899999999997665432 3479999998765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-15 Score=115.00 Aligned_cols=150 Identities=11% Similarity=-0.006 Sum_probs=105.4
Q ss_pred ecccCe-EEEEeC-CCcEEEEEcC--C-Cceeeeecc-----cccceEEEEEEeCCCEEEEecCC----------CeEEE
Q 029743 4 AADAMK-LLGTSG-DGTLSVCNLR--K-NTVQTRSEF-----SEEELTSVVLMKNGRKVVCGSQS----------GTVLL 63 (188)
Q Consensus 4 s~~~~~-l~~~~~-d~~i~i~~~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~ 63 (188)
||||++ |+.++. +..|+++++. . +. ...+.. |...+..++|+|||+.|++++.+ ..|++
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 499998 776654 5667777765 2 43 334444 56788999999999999988876 58999
Q ss_pred EEeCCcc----cccceee-eccCCceeEE-eecCCCEEEEecCC--------CeEEEEecc-cC---eeeeecccCCCcc
Q 029743 64 YSWGYFK----DCSDRFV-GLSPNSVDAL-LKLDEDRVITGSEN--------GLISLVGIL-PN---RIIQPIAEHSEYP 125 (188)
Q Consensus 64 ~d~~~~~----~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d--------~~v~~~d~~-~~---~~~~~~~~~~~~~ 125 (188)
||+.... .....+. . +...+..+ |+|||++|+.++.+ ..|++||+. ++ +.......+.. .
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~ 243 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDD-AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-A 243 (662)
T ss_dssp EETTSTTTTCGGGSEESSCS-CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-C
T ss_pred EECCCCccccCCceeEEEec-CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-e
Confidence 9987410 2334444 4 44556666 89999999877744 379999998 56 44433344334 7
Q ss_pred eeEEEeeCCCCEEEEEeCCC--cEEEEeCCCcc
Q 029743 126 IESLALSHDRKFLGSISHDS--MLKLWDLDDIL 156 (188)
Q Consensus 126 v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~ 156 (188)
+..++|+|||++++++..++ .|.+||+.+..
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 89999999999777777777 56666765544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.5e-14 Score=98.30 Aligned_cols=149 Identities=11% Similarity=0.136 Sum_probs=110.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++++|+|+++++...++.|.+|+.. ++.+..+. .+...+.+++++++++.+++...++.|++|+.. +..+..+..
T Consensus 126 i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~ 202 (286)
T 1q7f_A 126 VTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGG 202 (286)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESC
T ss_pred EEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC--CCEEEEEcc
Confidence 4678999877777778899999954 55544443 344568999999999988888888999999974 344444543
Q ss_pred cc--CCceeEE-eecCCCEEEEecCCC-eEEEEecccCeeeeecccCCC-cceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 79 LS--PNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 79 ~~--~~~v~~~-~~~~~~~l~~~~~d~-~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
. ...+..+ ++++|+++++...++ .|.+|+. .++.+..+..+.. ..+.+++++|+++.+++ +.++.|++|++.
T Consensus 203 -~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 203 -EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp -TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred -CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 3 2456777 789999888888776 9999995 4666666654422 13779999999987666 579999999986
Q ss_pred Cc
Q 029743 154 DI 155 (188)
Q Consensus 154 ~~ 155 (188)
..
T Consensus 280 ~~ 281 (286)
T 1q7f_A 280 QL 281 (286)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-14 Score=102.50 Aligned_cols=153 Identities=12% Similarity=0.013 Sum_probs=108.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEE--EEeCCCEEEEe----------------------c
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV--LMKNGRKVVCG----------------------S 56 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~ 56 (188)
++|+|||+.|+.++.++.|++||+.+++.......+...+.... ++|+++.++.. .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 37999999999999999999999999887666665555554444 47899888742 2
Q ss_pred CCCeEEEEEeCCcccccceeeeccCCceeEE-eec-CCCEEEEecCC------CeEEEEecccCeeeeecccCCC-ccee
Q 029743 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSEN------GLISLVGILPNRIIQPIAEHSE-YPIE 127 (188)
Q Consensus 57 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d------~~v~~~d~~~~~~~~~~~~~~~-~~v~ 127 (188)
.+..|.+||+.. +. ...+.. +...+..+ |+| +|+.|+..... ..|.++|+..+... .+..+.. ..+.
T Consensus 166 ~~~~l~~~d~~~-g~-~~~l~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~ 241 (388)
T 3pe7_A 166 PCCRLMRVDLKT-GE-STVILQ-ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCT 241 (388)
T ss_dssp CCEEEEEEETTT-CC-EEEEEE-ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEE
T ss_pred CcceEEEEECCC-Cc-eEEeec-CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccc
Confidence 346789999875 33 444555 56667777 899 99988776643 36888887655443 3433322 2577
Q ss_pred EEEeeCCCCEEEEEeC-CC----cEEEEeCCCccC
Q 029743 128 SLALSHDRKFLGSISH-DS----MLKLWDLDDILK 157 (188)
Q Consensus 128 ~~~~~~~~~~l~~~~~-d~----~i~iwd~~~~~~ 157 (188)
.++|+|||+.|+..+. ++ .|++||+.++..
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 8999999998865443 22 399999987653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-13 Score=97.94 Aligned_cols=154 Identities=11% Similarity=0.009 Sum_probs=114.1
Q ss_pred CeeecccCeEEEEeCC------------------------CcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEe
Q 029743 1 MTFAADAMKLLGTSGD------------------------GTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCG 55 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d------------------------~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 55 (188)
|+++|+|+++++...+ +.|.+||..+++.+..+. .+-..+..++++|+|+++++.
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d 108 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD 108 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence 5789999988887766 479999998888766554 344578999999999988888
Q ss_pred cCCCeEEEEEeCCcccccceee---------eccCCceeEE-eec-CCCEEEEec-CCCeEEEEecccCeeeeecccCCC
Q 029743 56 SQSGTVLLYSWGYFKDCSDRFV---------GLSPNSVDAL-LKL-DEDRVITGS-ENGLISLVGILPNRIIQPIAEHSE 123 (188)
Q Consensus 56 ~~d~~i~~~d~~~~~~~~~~~~---------~~~~~~v~~~-~~~-~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~ 123 (188)
..++.|++|+.......+..+. . +-..+..+ ++| ++.++++.+ .++.|++|+ ..+..+..+.....
T Consensus 109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~-~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~ 186 (329)
T 3fvz_A 109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQN-HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESS 186 (329)
T ss_dssp TTTTEEEEECTTCSSCCSEEESBTTBCCCSTT-CCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECC
T ss_pred CCCCEEEEEeCCCCeEEEEEecccCCCCCCcc-ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCC
Confidence 8899999999753211444442 2 23356777 788 788888886 689999999 45666666532211
Q ss_pred ---------cceeEEEeeCC-CCEEEEEeCCCcEEEEeCCCcc
Q 029743 124 ---------YPIESLALSHD-RKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 124 ---------~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
.....++++|+ +..+++...++.|++|+..++.
T Consensus 187 ~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~ 229 (329)
T 3fvz_A 187 GSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE 229 (329)
T ss_dssp SSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc
Confidence 13789999998 6666777788999999998543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-14 Score=102.53 Aligned_cols=150 Identities=10% Similarity=0.098 Sum_probs=109.0
Q ss_pred CeeecccCeEEEEeC----------CCcEEEEEcCCCceeeeeccc------ccceEEEEEEeCCCEEEEecC--CCeEE
Q 029743 1 MTFAADAMKLLGTSG----------DGTLSVCNLRKNTVQTRSEFS------EEELTSVVLMKNGRKVVCGSQ--SGTVL 62 (188)
Q Consensus 1 l~~s~~~~~l~~~~~----------d~~i~i~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--d~~i~ 62 (188)
++|+||+++++++.. ++.|.+||..+++.+..+... ......++++|+|++|+++.. ++.|.
T Consensus 55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~ 134 (361)
T 2oiz_A 55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIG 134 (361)
T ss_dssp EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEE
T ss_pred eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEE
Confidence 579999999998863 567999999988887776532 245678999999999998864 57899
Q ss_pred EEEeCCcccccce-ee------------------------------eccCCc----------------------------
Q 029743 63 LYSWGYFKDCSDR-FV------------------------------GLSPNS---------------------------- 83 (188)
Q Consensus 63 ~~d~~~~~~~~~~-~~------------------------------~~~~~~---------------------------- 83 (188)
+||+... +.+.. +. ......
T Consensus 135 v~d~~~~-~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (361)
T 2oiz_A 135 IVDVAKG-DYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDK 213 (361)
T ss_dssp EEETTTT-EEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSE
T ss_pred EEECCCC-cEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCE
Confidence 9987542 11111 00 000000
Q ss_pred ---------------------------------------ee---EE-eecCCCEEEEecC-----------CCeEEEEec
Q 029743 84 ---------------------------------------VD---AL-LKLDEDRVITGSE-----------NGLISLVGI 109 (188)
Q Consensus 84 ---------------------------------------v~---~~-~~~~~~~l~~~~~-----------d~~v~~~d~ 109 (188)
.. .+ ++|++++++++.. .+.|.+||+
T Consensus 214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~ 293 (361)
T 2oiz_A 214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT 293 (361)
T ss_dssp EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence 00 03 5677777666532 347999999
Q ss_pred ccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 110 LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 110 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
.+++.+..+..+. +.+++|+|+|++|++++. +.|.+||+.+.
T Consensus 294 ~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 294 KTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 9999999888763 789999999999988876 99999999987
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=99.57 Aligned_cols=152 Identities=11% Similarity=0.065 Sum_probs=110.8
Q ss_pred Ceeec-ccCeEEEEe-CCCcEEEEEcCCCceeeeecc----------cccceEEEEEEeC-CCEEEEecCCCeEEEEEeC
Q 029743 1 MTFAA-DAMKLLGTS-GDGTLSVCNLRKNTVQTRSEF----------SEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 1 l~~s~-~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~ 67 (188)
|+++| +++++++.+ .++.|++|+ .++..+..+.. +-.....++++|+ ++++++...++.|++|+..
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 46888 777777775 589999999 55666665532 2234889999998 7777777888999999987
Q ss_pred Ccccccceeee-ccCCceeEE-eec------CCCEEEEecCCCeEEEEecccCeeeeecc---cCCCcceeEEEeeCCCC
Q 029743 68 YFKDCSDRFVG-LSPNSVDAL-LKL------DEDRVITGSENGLISLVGILPNRIIQPIA---EHSEYPIESLALSHDRK 136 (188)
Q Consensus 68 ~~~~~~~~~~~-~~~~~v~~~-~~~------~~~~l~~~~~d~~v~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 136 (188)
+ +..+..+.. .+...+..+ ++| +|+..++...+..|++|++.+++.+..+. .+.. .+..++++|+|.
T Consensus 227 ~-G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~ 304 (329)
T 3fvz_A 227 T-KEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGT 304 (329)
T ss_dssp T-CCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSE
T ss_pred C-CcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCC
Confidence 4 455555532 034456667 677 34433333445689999999999888763 3433 689999999998
Q ss_pred EEEEEeCCCcEEEEeCCCc
Q 029743 137 FLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~ 155 (188)
.+++...++.|++|++...
T Consensus 305 lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEESSSCCEEEEEEEEC
T ss_pred EEEEECCCCEEEEEeCCcc
Confidence 7888888999999998754
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.5e-14 Score=109.75 Aligned_cols=153 Identities=8% Similarity=-0.013 Sum_probs=106.3
Q ss_pred CeeecccCeEEEEeCCC-----cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCe---------------
Q 029743 1 MTFAADAMKLLGTSGDG-----TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT--------------- 60 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------- 60 (188)
++|||||++|+.+..++ .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ 208 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence 36999999999876543 8999999998876533222 23678999999999998877655
Q ss_pred -EEEEEeCCcccc-cceeeec-cCCceeEE-eecCCCEEEEecC-----CCeEEEEeccc------Ce-eeeecccCCCc
Q 029743 61 -VLLYSWGYFKDC-SDRFVGL-SPNSVDAL-LKLDEDRVITGSE-----NGLISLVGILP------NR-IIQPIAEHSEY 124 (188)
Q Consensus 61 -i~~~d~~~~~~~-~~~~~~~-~~~~v~~~-~~~~~~~l~~~~~-----d~~v~~~d~~~------~~-~~~~~~~~~~~ 124 (188)
|++|++.+.... ...+... +...+..+ ++|+|++|+..+. +..|++||+.+ +. ....+..+..
T Consensus 209 ~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~- 287 (710)
T 2xdw_A 209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE- 287 (710)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-
T ss_pred EEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC-
Confidence 999999763321 1222220 22335566 8999999887664 56899999986 43 3455555544
Q ss_pred ceeEEEeeCCCCEEEEEeCC----CcEEEEeCCCcc
Q 029743 125 PIESLALSHDRKFLGSISHD----SMLKLWDLDDIL 156 (188)
Q Consensus 125 ~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~ 156 (188)
.+.. .|+++|+.|+..+.. ..|.+||+.+..
T Consensus 288 ~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 288 GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 3444 588899888766543 369999998753
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=101.14 Aligned_cols=139 Identities=10% Similarity=0.097 Sum_probs=104.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc-----------eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 69 (188)
|++++...++++|+.+ .+.+|++...+ ..... .+.. |+.++| +++.|+++ .++.|++||++..
T Consensus 43 Lais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl 116 (388)
T 1xip_A 43 LDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL 116 (388)
T ss_dssp EEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST
T ss_pred EEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh
Confidence 4788999999999886 56679865432 11122 3566 999999 89999998 8899999999764
Q ss_pred ccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 70 KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
. ....... +...+..+ +.+. .++++..||.|.+||+..+.... +.. .|++++|+|+| ++.+..||.++
T Consensus 117 ~-~~~~~~~-~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~-~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 117 S-EFRTVTS-FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQ-NVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp T-CEEEEEE-CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEE-SEEEEEECSSE--EEEEETTSCEE
T ss_pred h-ccCccce-eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccC-CceEEEEcCCc--eEEEEcCCcEE
Confidence 3 3344555 66777776 4332 28888999999999998777643 223 69999999999 67788999999
Q ss_pred EEeCCCcc
Q 029743 149 LWDLDDIL 156 (188)
Q Consensus 149 iwd~~~~~ 156 (188)
+|+.....
T Consensus 186 ~~~~~~~~ 193 (388)
T 1xip_A 186 SFAWRNGE 193 (388)
T ss_dssp EEEEETTE
T ss_pred EEcCCCcc
Confidence 99887655
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-14 Score=103.77 Aligned_cols=152 Identities=9% Similarity=-0.076 Sum_probs=102.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEE-------------------EEEEeCCCEEEEe-----cC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTS-------------------VVLMKNGRKVVCG-----SQ 57 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~ 57 (188)
.|+|||++|+.++.++.|++|++.+++.......+...... +.|+|+++.++.. ..
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 87 FISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred eECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 58999999999999899999999988765554433332222 2456666665543 34
Q ss_pred CCeEEEEEeCCcccccceeeeccCCceeEE-eec-CCCEEEEecCC------CeEEEEecccCeeeeecccCCCcceeEE
Q 029743 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSEN------GLISLVGILPNRIIQPIAEHSEYPIESL 129 (188)
Q Consensus 58 d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d------~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 129 (188)
+..|.+||+.. +.. ..+.. +...+..+ |+| +++.++..+.+ ..|.+|++..+.............+..+
T Consensus 167 ~~~l~~~d~~~-g~~-~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 167 TCRLIKVDIET-GEL-EVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp CEEEEEEETTT-CCE-EEEEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred cceEEEEECCC-CcE-Eeecc-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 56889999875 333 33334 55667777 899 78877665433 4688899876554333332112257889
Q ss_pred EeeCCCCEEEEEeCC-----CcEEEEeCCCcc
Q 029743 130 ALSHDRKFLGSISHD-----SMLKLWDLDDIL 156 (188)
Q Consensus 130 ~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 156 (188)
+|+|+|++|+.++.+ +.|++||+.+..
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 999999988766543 449999998754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-12 Score=93.36 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=105.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC----CeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~ 76 (188)
++|+|++++++++..++.|++||..+++.......+...+.+++++|+++++++...+ +.|.+||... +.....+
T Consensus 50 ~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~ 128 (333)
T 2dg1_A 50 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDII 128 (333)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEEE
T ss_pred cEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEEEE
Confidence 3688999977788888999999998887655443456789999999999988877666 6899999764 2222122
Q ss_pred e--eccCCceeEE-eecCCCEEEEecC------CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEE-EEeCCCc
Q 029743 77 V--GLSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG-SISHDSM 146 (188)
Q Consensus 77 ~--~~~~~~v~~~-~~~~~~~l~~~~~------d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~ 146 (188)
. . ....+..+ ++|+|+++++... .+.|..++..+++........ . .+..++|+|+++.|+ +...++.
T Consensus 129 ~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~i~~~~dg~~l~v~~~~~~~ 205 (333)
T 2dg1_A 129 EDLS-TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI-S-VANGIALSTDEKVLWVTETTANR 205 (333)
T ss_dssp CSSS-SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE-S-SEEEEEECTTSSEEEEEEGGGTE
T ss_pred ccCc-cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC-C-cccceEECCCCCEEEEEeCCCCe
Confidence 2 2 33457777 7999988777654 356777776554443322222 2 578899999998665 4456789
Q ss_pred EEEEeCCC
Q 029743 147 LKLWDLDD 154 (188)
Q Consensus 147 i~iwd~~~ 154 (188)
|.+|++.+
T Consensus 206 i~~~d~~~ 213 (333)
T 2dg1_A 206 LHRIALED 213 (333)
T ss_dssp EEEEEECT
T ss_pred EEEEEecC
Confidence 99999863
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=101.09 Aligned_cols=152 Identities=10% Similarity=-0.041 Sum_probs=103.0
Q ss_pred CeeecccCeEEEEeCC---CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
++|||||++|+..... ..|++|++.+++.......+......+.|+|+|+.|+..+.++.|++|++.. +.......
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~~~~~ 119 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET-LEEQVIYT 119 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEE
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC-CCcEEEEe
Confidence 4689999998877543 4688889888876544333332233478999999999999888999999875 33333333
Q ss_pred eccCCceeE-------------------E-eecCCCEEEEe-----cCCCeEEEEecccCeeeeecccCCCcceeEEEee
Q 029743 78 GLSPNSVDA-------------------L-LKLDEDRVITG-----SENGLISLVGILPNRIIQPIAEHSEYPIESLALS 132 (188)
Q Consensus 78 ~~~~~~v~~-------------------~-~~~~~~~l~~~-----~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 132 (188)
. +...... + ++|+++.++.. ..+..|++||+.+++...... +.. .+..+.|+
T Consensus 120 ~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~~-~~~~~~~s 196 (396)
T 3c5m_A 120 V-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-DTA-WLGHPIYR 196 (396)
T ss_dssp C-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-ESS-CEEEEEEE
T ss_pred c-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-CCc-ccccceEC
Confidence 2 2222111 2 46677766544 356679999998877654443 323 68899999
Q ss_pred C-CCCEEEEEeCC------CcEEEEeCCCcc
Q 029743 133 H-DRKFLGSISHD------SMLKLWDLDDIL 156 (188)
Q Consensus 133 ~-~~~~l~~~~~d------~~i~iwd~~~~~ 156 (188)
| +++.|+..+.+ ..|.+|++....
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 9 78877765543 468899987654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-12 Score=100.09 Aligned_cols=154 Identities=12% Similarity=0.014 Sum_probs=108.8
Q ss_pred CeeecccCeEEEEeCCCc----------------EEEEEcCCCce----eeeecccccceEEEEEEeCCCEEEEecC---
Q 029743 1 MTFAADAMKLLGTSGDGT----------------LSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQ--- 57 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~----------------i~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 57 (188)
++|+|||+.|+.+..++. |++|++.+++. +.....+...+..+.|+|+|++|+..+.
T Consensus 176 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 255 (710)
T 2xdw_A 176 MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC 255 (710)
T ss_dssp EEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS
T ss_pred EEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC
Confidence 479999999999887765 99999987652 2222234556789999999999887664
Q ss_pred --CCeEEEEEeCC------cccccceeeeccCCceeEEeecCCCEEEEecC----CCeEEEEecccCee--eeecccCCC
Q 029743 58 --SGTVLLYSWGY------FKDCSDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGILPNRI--IQPIAEHSE 123 (188)
Q Consensus 58 --d~~i~~~d~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~v~~~d~~~~~~--~~~~~~~~~ 123 (188)
+..|++||+.. +......+.. +...+...++|+|+.|+..+. .+.|.+||+.++.. ...+..+..
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 334 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLID-NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred CCccEEEEEECcccccccCCccceEEeeC-CCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence 56899999864 2224566666 666666668899988776654 33699999987642 234434432
Q ss_pred -cceeEEEeeCCCCEEEEEeCCCc--EEEEeCCCc
Q 029743 124 -YPIESLALSHDRKFLGSISHDSM--LKLWDLDDI 155 (188)
Q Consensus 124 -~~v~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~ 155 (188)
..+..++|++++.++++...++. |.+|++.++
T Consensus 335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence 25788999977777888888874 666777444
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-12 Score=89.36 Aligned_cols=149 Identities=9% Similarity=0.137 Sum_probs=107.1
Q ss_pred ee-ecccCeEEEEeC-CCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 2 TF-AADAMKLLGTSG-DGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~-s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++ .++++++++... ++.|++|+ .+++.+..+. .+...+.+++++|+++.+++...++.|.+|+.. +..+..+..
T Consensus 83 ~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~ 159 (286)
T 1q7f_A 83 AVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGC 159 (286)
T ss_dssp EEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEEC
T ss_pred EEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCC
Confidence 45 356666665533 78999999 5566655554 334578999999999988887888999999964 344444431
Q ss_pred -ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCC-CcceeEEEeeCCCCEEEEEeCCC-cEEEEeCCC
Q 029743 79 -LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDS-MLKLWDLDD 154 (188)
Q Consensus 79 -~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~ 154 (188)
.+...+..+ ++++|+++++...++.|++|+.. ++.+..+..+. ...+..++++++++++++...++ .|.+|+...
T Consensus 160 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g 238 (286)
T 1q7f_A 160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG 238 (286)
T ss_dssp TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence 033456777 79999988888889999999974 55555554331 12578999999998888877775 999999654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=94.47 Aligned_cols=140 Identities=14% Similarity=0.167 Sum_probs=98.6
Q ss_pred CeeecccCeEEEEeCC---------------------------CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE
Q 029743 1 MTFAADAMKLLGTSGD---------------------------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV 53 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---------------------------~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 53 (188)
++|+|||+.|+.++.+ ..|++|++.+++.+..+.. . .+..+.|+|+| .++
T Consensus 109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVV 185 (347)
T ss_dssp EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEE
Confidence 3699999999888642 5689999988876445544 3 78899999999 777
Q ss_pred EecCCC-------eEEEEEeCCcccccceeeeccCCceeEEeecCCCEEEEecCC--------CeEEEEecccCeeeeec
Q 029743 54 CGSQSG-------TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN--------GLISLVGILPNRIIQPI 118 (188)
Q Consensus 54 ~~~~d~-------~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d--------~~v~~~d~~~~~~~~~~ 118 (188)
++..+. ...+|.++ .+. ...+.. + ..+..+ +|+|++|+.++.+ ..|++|| +++.....
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~-~-~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWE-DGK-EEKMFE-K-VSFYAV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEE-TTE-EEEEEE-E-ESEEEE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred EEecccccccccccccEEEeC-CCc-eEEecc-C-cceeeE-CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 775542 44556554 233 344555 4 444444 9999988876643 4688888 56555444
Q ss_pred ccCCCcceeE-EEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 119 AEHSEYPIES-LALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 119 ~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
..+.. .+.. +.|+ ++ .+++++.++.+++| +.+
T Consensus 259 ~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 259 DEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp TTCCS-EEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred ccCCc-ccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 55433 6776 8999 88 88888999999999 873
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-12 Score=91.12 Aligned_cols=147 Identities=10% Similarity=0.014 Sum_probs=105.2
Q ss_pred CeeecccC-eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-
Q 029743 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (188)
Q Consensus 1 l~~s~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~- 78 (188)
++|+|+++ +++++..++.|++|+..++ ...+..+...+.+++++|+|+++++...++.|.+||..+ +........
T Consensus 33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~ 109 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESIADSF 109 (296)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEEECEE
T ss_pred CeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEEeecc
Confidence 36899998 6777788899999998877 455555677899999999999888877778999999854 232222211
Q ss_pred --ccCCceeEE-eecCCCEEEE----ec-------------CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE
Q 029743 79 --LSPNSVDAL-LKLDEDRVIT----GS-------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 79 --~~~~~v~~~-~~~~~~~l~~----~~-------------~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
.....+..+ ++|+|+++++ |+ ..+.|..++.. ++.. .+..+.. ....++|+|+++.|
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~-~~~gi~~s~dg~~l 186 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDRV-KPNGLAFLPSGNLL 186 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCCS-SEEEEEECTTSCEE
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCCC-CCccEEECCCCCEE
Confidence 011234556 7999998887 33 13456666655 4433 3333333 57899999999988
Q ss_pred EEEeCCCcEEEEeCC
Q 029743 139 GSISHDSMLKLWDLD 153 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~ 153 (188)
++.+.++.|.+|++.
T Consensus 187 v~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 187 VSDTGDNATHRYCLN 201 (296)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEeCCCCeEEEEEEC
Confidence 777778999999986
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-12 Score=89.14 Aligned_cols=154 Identities=6% Similarity=-0.062 Sum_probs=108.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++++|+|+++++...++.|.+|+..+.............+.+++++++++.+++...++.|.+|+.... ........ .
T Consensus 113 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~-~ 190 (270)
T 1rwi_B 113 LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFT-D 190 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCS-S
T ss_pred eEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-ceEeeccc-C
Confidence 467888887777667788999976554433222223346789999999997777777889999998642 22221122 2
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
...+..+ ++++|.++++...++.|.+|+............+.. .+.+++++++|+.+++...++.|+++++...+.
T Consensus 191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~-~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN-TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCS-CEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCC-CceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 2456777 689998777777888999999875543332222223 588999999999888888899999999886654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=91.45 Aligned_cols=144 Identities=11% Similarity=0.071 Sum_probs=111.9
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccc-cceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC-Cc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NS 83 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~ 83 (188)
.+++|++++.++.|++||.++++.+..+..+. ..+.++.+.|+|+++++ .++.|..||. + ++.+..+.. .. ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~-G~~~W~~~~-~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-D-GRELWNIAA-PAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-T-SCEEEEEEC-CTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-C-CCEEEEEcC-CCCcc
Confidence 36789999999999999999999999888665 47899999999998883 4678999997 4 566666665 42 35
Q ss_pred eeEE-eecCCCEEEEecC-CCeEEEEecccCeeeeecccCC-----CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 84 VDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHS-----EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~-d~~v~~~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+.++ +.++|+++++.+. ++.|..++. +++.+..+.... ......+++.++|+++++...++.|.+||.+ ++
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 6666 7899999999887 778888885 677665543111 1145567889999999999999999999987 44
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-13 Score=105.37 Aligned_cols=151 Identities=8% Similarity=-0.063 Sum_probs=99.7
Q ss_pred CeeecccCeEEEE-----eCCCcEEEEEcCCCceeeeecccccc--eEEEEEEeCCCEEEEecCCCe-------------
Q 029743 1 MTFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEE--LTSVVLMKNGRKVVCGSQSGT------------- 60 (188)
Q Consensus 1 l~~s~~~~~l~~~-----~~d~~i~i~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~------------- 60 (188)
++|||||++|+.+ +.+..|++||+.+++.+.. .+... ...++|+|||+.|+.++.+..
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~ 203 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTT 203 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCE
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCE
Confidence 3699999999844 3346899999999876411 11122 268999999999999887765
Q ss_pred EEEEEeCCcccc-cceeee-ccCCceeEE-eecCCCEEEEecCCC----eEEEEecccCeeeeecccCCCcceeEEEeeC
Q 029743 61 VLLYSWGYFKDC-SDRFVG-LSPNSVDAL-LKLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 61 i~~~d~~~~~~~-~~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~----~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 133 (188)
|++|++.+.... ...+.. .+...+..+ ++|+|++|+..+.++ .|++++..++.. ..+..+.. .+....+ +
T Consensus 204 v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~-~~~~~~~-~ 280 (695)
T 2bkl_A 204 IRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVG-AKYEVHA-W 280 (695)
T ss_dssp EEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSS-CCEEEEE-E
T ss_pred EEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCC-ceEEEEe-c
Confidence 999999764321 112221 023456666 899999998877655 677777655543 34444434 4555666 5
Q ss_pred CCCEEEEEe---CCCcEEEEeCCCcc
Q 029743 134 DRKFLGSIS---HDSMLKLWDLDDIL 156 (188)
Q Consensus 134 ~~~~l~~~~---~d~~i~iwd~~~~~ 156 (188)
++.+++... .++.|.+||+.+..
T Consensus 281 ~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 281 KDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp TTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred CCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 666444443 25789999997754
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-12 Score=89.45 Aligned_cols=148 Identities=7% Similarity=-0.013 Sum_probs=113.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeeccc-ccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.++|+|++++ +.++.|+.||. +++.+..+..+ ...+.++.+.++|+.+++.+. ++.+..++. .++.+..+...
T Consensus 43 ~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~ 117 (276)
T 3no2_A 43 AATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTEFE 117 (276)
T ss_dssp EECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEEEC
T ss_pred EECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEecc
Confidence 5789999888 34678999998 78888888754 357888999999999998877 666666664 34555444320
Q ss_pred -----cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 80 -----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 80 -----~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
+......+ ..++|+++++...++.|..||.. |+.+.++... . .+.++.+.++++.++++..++.|..+|..
T Consensus 118 ~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 118 TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-G-TPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-S-CCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-C-CccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 11123333 57899999999999999999987 9988888765 3 46778889999999988888889999988
Q ss_pred CccC
Q 029743 154 DILK 157 (188)
Q Consensus 154 ~~~~ 157 (188)
+++.
T Consensus 195 tG~~ 198 (276)
T 3no2_A 195 SNRI 198 (276)
T ss_dssp TCCE
T ss_pred CCcE
Confidence 6654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=92.39 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=93.1
Q ss_pred CeeecccCeEEEEeCC---C--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-----------------
Q 029743 1 MTFAADAMKLLGTSGD---G--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----------------- 58 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------- 58 (188)
++|||||++|+.++.+ + .|++|++.+++....... .. +..++|+|+|+.|+.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 3699999999988654 2 478888888776554443 33 9999999999988887632
Q ss_pred ----------CeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCC-------eEEEEecccCeeeeeccc
Q 029743 59 ----------GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG-------LISLVGILPNRIIQPIAE 120 (188)
Q Consensus 59 ----------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~-------~v~~~d~~~~~~~~~~~~ 120 (188)
..|.+||+.. +..+..+.. . .+..+ |+|+| +++++..+. ...||.+.+++. ..+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~-~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTES-EEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTT-TEEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEE
T ss_pred cCcccccCccceEEEEECCC-CeEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEecc
Confidence 4688888865 343244554 3 56666 89999 777775432 334444445543 33433
Q ss_pred CCCcceeEEEeeCCCCEEEEEeCC--------CcEEEEe
Q 029743 121 HSEYPIESLALSHDRKFLGSISHD--------SMLKLWD 151 (188)
Q Consensus 121 ~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd 151 (188)
+ . .+..+ +|+|++|+.++.+ ..|.+||
T Consensus 216 ~-~-~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 216 K-V-SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp E-E-SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred C-c-ceeeE--CCCCCEEEEEEccccCCccccceEEEEC
Confidence 3 3 45544 9999998877644 3678888
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-11 Score=88.82 Aligned_cols=150 Identities=10% Similarity=-0.002 Sum_probs=105.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccc-----cceEEEEEEeCCCEEEEec--CCCeEEEEEeCCccccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-----EELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~ 73 (188)
++++++++.+++...++.|.+||..+++....+.... .....+++ . +..++++. .++.|.++|..+ +...
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t-~~~~ 165 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTET-DKVV 165 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTT-TEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCC-CeEE
Confidence 4677888544444378999999999988776665322 14567777 3 44555544 478999999976 3555
Q ss_pred ceeeeccCCceeEE-eecCCCEEEEecCC----------CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 74 DRFVGLSPNSVDAL-LKLDEDRVITGSEN----------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d----------~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
..+.. .. ....+ ++|+|+++++...+ +.|.++|..+++....+....+.....++|+|+++.|+++.
T Consensus 166 ~~i~~-g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 166 DELTI-GI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEEEC-SS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred EEEEc-CC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 55543 33 33455 78999877776654 78999999988877666543222578999999999888775
Q ss_pred CCCcEEEEeCCCccC
Q 029743 143 HDSMLKLWDLDDILK 157 (188)
Q Consensus 143 ~d~~i~iwd~~~~~~ 157 (188)
. .|.+||+.+...
T Consensus 244 ~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 244 N--DIWRMPVEADRV 256 (328)
T ss_dssp S--SEEEEETTCSSC
T ss_pred c--EEEEEECCCCce
Confidence 4 899999987664
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-12 Score=91.95 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=104.8
Q ss_pred cccCeEEEEe------CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC----------CCeEEEEEeCC
Q 029743 5 ADAMKLLGTS------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGY 68 (188)
Q Consensus 5 ~~~~~l~~~~------~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~~~d~~~ 68 (188)
++++++++.. .|+.|++||..+++.+..++.+..+ .++|+|+++++++++. ++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 4677777764 3679999999999888888765554 8999999999998863 56799999875
Q ss_pred cccccceeeecc------CCceeEE-eecCCCEEEEecC--CCeEEEEecccCeeeee-cccCCCcceeEEEeeCCC-CE
Q 029743 69 FKDCSDRFVGLS------PNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDR-KF 137 (188)
Q Consensus 69 ~~~~~~~~~~~~------~~~v~~~-~~~~~~~l~~~~~--d~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~ 137 (188)
.+.+..+.. . ......+ ++|+|++|+++.. ++.|.+||+.+++.+.. +... + ...+.+.|++ ..
T Consensus 91 -~~~~~~i~~-~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~--~~~v~~~p~~~~~ 165 (361)
T 2oiz_A 91 -LTFEKEISL-PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G--CWSVIPQPNRPRS 165 (361)
T ss_dssp -CCEEEEEEE-CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T--EEEEEECTTSSSE
T ss_pred -CcEEEEEEc-CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C--cceeEEcCCCCee
Confidence 355555542 2 1234455 7999999998863 57899999999988877 6543 2 2335566765 56
Q ss_pred EEEEeCCCcEEEEeCCC
Q 029743 138 LGSISHDSMLKLWDLDD 154 (188)
Q Consensus 138 l~~~~~d~~i~iwd~~~ 154 (188)
+++.+.||.+.+|++..
T Consensus 166 ~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 166 FMTICGDGGLLTINLGE 182 (361)
T ss_dssp EEEEETTSSEEEEEECT
T ss_pred EEEECCCCcEEEEEECC
Confidence 66777788888887754
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-11 Score=94.80 Aligned_cols=150 Identities=9% Similarity=0.033 Sum_probs=109.3
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeC-CcccccceeeeccCCc
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG-YFKDCSDRFVGLSPNS 83 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~ 83 (188)
|.+.++++...++.|.++|..+++.+..+.. ...+..+.++|+|+++++++.++.|.+||+. .....+..+.. . ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G-~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-G-SE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-C-SE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-C-CC
Confidence 4444566667789999999999998888763 3467799999999999999999999999995 12345555543 3 33
Q ss_pred eeEE-ee----cCCCEEEEecC-CCeEEEEecccCeeeeecccCC----------C------------------------
Q 029743 84 VDAL-LK----LDEDRVITGSE-NGLISLVGILPNRIIQPIAEHS----------E------------------------ 123 (188)
Q Consensus 84 v~~~-~~----~~~~~l~~~~~-d~~v~~~d~~~~~~~~~~~~~~----------~------------------------ 123 (188)
...+ ++ |+|+++++++. .+.|.++|..+.+.+..+.... .
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 4566 78 69999888774 5899999988776655432110 0
Q ss_pred --------------------cceeEEEeeCCCCEEEEEe-CCCcEEEEeCCCccC
Q 029743 124 --------------------YPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILK 157 (188)
Q Consensus 124 --------------------~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~ 157 (188)
....++.|+|++++++++. .++.|.++|+.+.+.
T Consensus 322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 0123567999999887655 578999999988653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-11 Score=85.13 Aligned_cols=152 Identities=7% Similarity=-0.034 Sum_probs=104.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|+++++++++++.. ++.|.+|+................+.++++.++++.+++...++.|.+|+.... ........ .
T Consensus 72 i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~-~ 148 (270)
T 1rwi_B 72 LAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK-TQTVLPFT-G 148 (270)
T ss_dssp EEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC-SCEECCCC-S
T ss_pred eEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc-eeEeeccc-c
Confidence 46788888665555 889999997765433222123356899999999998777777889999975431 11111112 2
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
...+..+ ++++|+++++...++.|.+|+............+.. .+.+++++++|..+++...++.|.+|+.....
T Consensus 149 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCC-CceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 2345667 689999777777788999999876654433322223 68899999999777777778899999987643
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-11 Score=85.75 Aligned_cols=150 Identities=8% Similarity=0.016 Sum_probs=103.2
Q ss_pred CeeecccCeEEEE----e-------------CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEE
Q 029743 1 MTFAADAMKLLGT----S-------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (188)
Q Consensus 1 l~~s~~~~~l~~~----~-------------~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 63 (188)
++++|+|+++++. + ..+.|..++.. ++. ..+..+......++|+|+++.+++.+.++.|.+
T Consensus 120 i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~ 197 (296)
T 3e5z_A 120 VCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHR 197 (296)
T ss_dssp EEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEE
Confidence 4678999888863 2 12456666654 443 333445567789999999998877778899999
Q ss_pred EEeCCcccc---cceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEe-eCCCCEE
Q 029743 64 YSWGYFKDC---SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL-SHDRKFL 138 (188)
Q Consensus 64 ~d~~~~~~~---~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l 138 (188)
|++...+.. ...+.. +...+..+ ++++|+++++. ++.|.+|+.. ++.+..+..+.. +.+++| .|+++.|
T Consensus 198 ~~~~~~g~~~~~~~~~~~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 198 YCLNARGETEYQGVHFTV-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTL 271 (296)
T ss_dssp EEECSSSCEEEEEEEECC-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEE
T ss_pred EEECCCCcCcCCCeEeeC-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEE
Confidence 999632332 223322 34445667 78999876666 7889999986 777777776633 889999 5888888
Q ss_pred EEEeCCCcEEEEeCCCccCCC
Q 029743 139 GSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~~ 159 (188)
++++.+ .+..++.++...+.
T Consensus 272 ~v~t~~-~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 272 YMTVST-EFWSIETNVRGLEH 291 (296)
T ss_dssp EEEETT-EEEEEECSCCBCCC
T ss_pred EEEcCC-eEEEEEcccccccc
Confidence 887765 46666776655544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-12 Score=89.88 Aligned_cols=148 Identities=11% Similarity=0.066 Sum_probs=107.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++..++..+.++.++.| .++....+..+...+.+++|+|++++++++..++.|.+||... +........ +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~~-~ 85 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFVS-H 85 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEEC-S
T ss_pred eeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEEeeC-C
Confidence 4688888888777778889888 3455556666667789999999999888888899999999864 333333334 5
Q ss_pred CCceeEE-eecCCCEEEEecCC----CeEEEEecccCeeeeecc--cCCCcceeEEEeeCCCCEEEEEeC------CCcE
Q 029743 81 PNSVDAL-LKLDEDRVITGSEN----GLISLVGILPNRIIQPIA--EHSEYPIESLALSHDRKFLGSISH------DSML 147 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d----~~v~~~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~------d~~i 147 (188)
...+.++ ++|+|+++++...+ +.|.+||..++.....+. .. ...+..++++|+++++++... .+.|
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l 164 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST-AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV 164 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS-CCCEEEEEECTTSCEEEEECCCBTTBCCEEE
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc-CCcccceEECCCCCEEEEeccccccCCCceE
Confidence 5678888 78999988877666 689999988766542332 12 236899999999987776653 3566
Q ss_pred EEEeCCC
Q 029743 148 KLWDLDD 154 (188)
Q Consensus 148 ~iwd~~~ 154 (188)
..++..+
T Consensus 165 ~~~~~~~ 171 (333)
T 2dg1_A 165 YYVSPDF 171 (333)
T ss_dssp EEECTTS
T ss_pred EEEeCCC
Confidence 6676654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.6e-12 Score=91.90 Aligned_cols=127 Identities=9% Similarity=0.055 Sum_probs=97.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|+| ++++|+++ .++.|++||+.+.........|..++.++.+.+. .++++..||.+.+||+... ... . +
T Consensus 93 l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~-~~~----~-~ 161 (388)
T 1xip_A 93 VCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-STK----Q-L 161 (388)
T ss_dssp EEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-CEE----E-E
T ss_pred EEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCC-ccc----c-c
Confidence 356 88999998 7899999999876555556667778888777654 3888999999999999753 322 2 3
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCee--eeec------c---cCCCcceeEEEeeCCCCEEEEE
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPI------A---EHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~--~~~~------~---~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
...++|+ |+|+| ++.|..||.+++|+...+.. ..++ . +|. ..|.++.|.+++.++++-
T Consensus 162 ~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~-~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 162 AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE-YSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT-SEEEEEEESSSSEEEEEE
T ss_pred cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC-eeEEEEEEecCCeEEEEE
Confidence 4578999 89999 67888999999999887764 4445 2 243 479999999999988753
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-11 Score=94.54 Aligned_cols=149 Identities=9% Similarity=-0.013 Sum_probs=101.5
Q ss_pred CeeecccCeEEEEeCCCc-------------EEEEEcCCCc----eeeeecccccceEEEEEEeCCCEEEEecCCC----
Q 029743 1 MTFAADAMKLLGTSGDGT-------------LSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQSG---- 59 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~-------------i~i~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---- 59 (188)
++|+|||+.|+.++.+.. |++|++.++. ++.....+...+.++.|+|+|++|+..+.++
T Consensus 173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN 252 (695)
T ss_dssp CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence 579999999999988766 9999998775 3333334556789999999999988776655
Q ss_pred eEEEEEeCCcccccceeeeccCCceeEEeecCCCEEEEec---CCCeEEEEecccCee--eeecccCC-CcceeEEEeeC
Q 029743 60 TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS---ENGLISLVGILPNRI--IQPIAEHS-EYPIESLALSH 133 (188)
Q Consensus 60 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~d~~v~~~d~~~~~~--~~~~~~~~-~~~v~~~~~~~ 133 (188)
.|.+++.. ......+.. +.......+.++|.+++... .++.|.+||+.++.. ...+..+. ...+..++|+
T Consensus 253 ~l~~~~~~--~~~~~~l~~-~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~- 328 (695)
T 2bkl_A 253 DVYWKRPG--EKDFRLLVK-GVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV- 328 (695)
T ss_dssp EEEEECTT--CSSCEEEEE-CSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-
T ss_pred EEEEEcCC--CCceEEeec-CCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-
Confidence 55555443 234555665 55555555446777434433 257899999987653 22333222 3357888888
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 029743 134 DRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~~ 153 (188)
++..+++...|+..++|.+.
T Consensus 329 ~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 329 GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp TTEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEEEe
Confidence 66778888889888877554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.5e-11 Score=86.06 Aligned_cols=156 Identities=11% Similarity=0.000 Sum_probs=108.6
Q ss_pred CeeecccCeEEEEe----------CCCcEEEEEcCCCceeeeeccc-------ccceEEEEEEeCCCEEEEecC--CCeE
Q 029743 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS-------EEELTSVVLMKNGRKVVCGSQ--SGTV 61 (188)
Q Consensus 1 l~~s~~~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i 61 (188)
+++||||++++.+. .++.|.++|..+.+.+..+... ......++|+|+|++|++++. ++.|
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v 150 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV 150 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence 57999999999886 3678999999988777665421 123568999999999998874 4779
Q ss_pred EEEEeCCcccccce-eee----------------------------------c---------------c------C----
Q 029743 62 LLYSWGYFKDCSDR-FVG----------------------------------L---------------S------P---- 81 (188)
Q Consensus 62 ~~~d~~~~~~~~~~-~~~----------------------------------~---------------~------~---- 81 (188)
.++| .+. +.+.. +.. . + .
T Consensus 151 ~viD-~t~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 228 (373)
T 2mad_H 151 GLVV-QGG-SSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV 228 (373)
T ss_pred EEEE-CCC-CEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEE
Confidence 9998 653 22222 100 0 0 0
Q ss_pred --------------------------------------CceeEE-eecCCCEEEEecC----------CCeEEEEecccC
Q 029743 82 --------------------------------------NSVDAL-LKLDEDRVITGSE----------NGLISLVGILPN 112 (188)
Q Consensus 82 --------------------------------------~~v~~~-~~~~~~~l~~~~~----------d~~v~~~d~~~~ 112 (188)
.....+ ++|+++.++++.. .+.|.++|+.++
T Consensus 229 ~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~ 308 (373)
T 2mad_H 229 WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG 308 (373)
T ss_pred EEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC
Confidence 000002 3556666665432 357999999999
Q ss_pred eeeeecccCCCcceeEEEeeCCCC-EEEEEe-CCCcEEEEeCCCccCCCC
Q 029743 113 RIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 113 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~~ 160 (188)
+.+..+... . ...+++|+|||+ .++++. .++.|.++|+.+.+....
T Consensus 309 ~vv~~i~~g-~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 309 QTSSQISLG-H-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEEEECC-C-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 988888654 3 578999999999 677776 589999999998776544
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-11 Score=98.27 Aligned_cols=149 Identities=11% Similarity=0.085 Sum_probs=100.3
Q ss_pred eeecccCeEEEEeCC-----CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCe--------------EE
Q 029743 2 TFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT--------------VL 62 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------i~ 62 (188)
+|||||++|+.+..+ ..|++||+.+++.+... .+...+..++|+|| +.|+.+..++. |+
T Consensus 169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence 699999999887653 36999999998775431 12223468899999 98888776543 88
Q ss_pred EEEeCCcccc-cceeeeccC--CceeEE-eecCCCEEEEecCC-----CeEEEEecccC--eeeeecccCCCcceeEEEe
Q 029743 63 LYSWGYFKDC-SDRFVGLSP--NSVDAL-LKLDEDRVITGSEN-----GLISLVGILPN--RIIQPIAEHSEYPIESLAL 131 (188)
Q Consensus 63 ~~d~~~~~~~-~~~~~~~~~--~~v~~~-~~~~~~~l~~~~~d-----~~v~~~d~~~~--~~~~~~~~~~~~~v~~~~~ 131 (188)
+|++.+.... ...+.. .. ..+..+ ++|+|++|+..+.+ ..|++||+.++ ++...+..+.. .+... +
T Consensus 247 ~~~lgt~~~~~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~-~ 323 (741)
T 1yr2_A 247 LHRLGTPQSADQPVFAT-PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK-AQWDF-V 323 (741)
T ss_dssp EEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS-SCEEE-E
T ss_pred EEECCCCchhCEEEecc-CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC-ceEEE-E
Confidence 8998653321 122222 22 235666 89999988877644 37999999876 31445544444 34444 3
Q ss_pred eCCCCEEEEEeCC----CcEEEEeCCCc
Q 029743 132 SHDRKFLGSISHD----SMLKLWDLDDI 155 (188)
Q Consensus 132 ~~~~~~l~~~~~d----~~i~iwd~~~~ 155 (188)
.|+++.|+..+.+ +.|.+||+.+.
T Consensus 324 ~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 324 DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 4888888777653 45999998764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-10 Score=82.13 Aligned_cols=150 Identities=8% Similarity=0.072 Sum_probs=102.4
Q ss_pred CeeecccCeEEEEeCC---------------CcEEEEEcCCCceeeeecccccceEEEEEE----eCCCEEEEe-cCCCe
Q 029743 1 MTFAADAMKLLGTSGD---------------GTLSVCNLRKNTVQTRSEFSEEELTSVVLM----KNGRKVVCG-SQSGT 60 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---------------~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~ 60 (188)
++++|+|+++++...+ +.|..++.. ++..... .+......++++ |+++.++.+ ..++.
T Consensus 122 i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~ 199 (314)
T 1pjx_A 122 CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKK 199 (314)
T ss_dssp EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred EEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence 3577888877776554 467777765 5443322 234456889999 999765554 56789
Q ss_pred EEEEEeCCccc-----ccceeeeccC-CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeC
Q 029743 61 VLLYSWGYFKD-----CSDRFVGLSP-NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 61 i~~~d~~~~~~-----~~~~~~~~~~-~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 133 (188)
|.+|++...+. ....+.. +. ..+..+ ++++|+++++...++.|.+||.++++.+..+..+.. .+.+++|++
T Consensus 200 i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~ 277 (314)
T 1pjx_A 200 LWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKP 277 (314)
T ss_dssp EEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-CEEEEEECT
T ss_pred EEEEECCCCCccccceEEEECCC-CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC-CceeEEECC
Confidence 99999752122 1112222 22 445667 689998888877788999999987776666655534 689999999
Q ss_pred CCCEEE-EEeCCCcEEEEeCCC
Q 029743 134 DRKFLG-SISHDSMLKLWDLDD 154 (188)
Q Consensus 134 ~~~~l~-~~~~d~~i~iwd~~~ 154 (188)
+++.|. +...++.|..|++..
T Consensus 278 dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 278 QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEeCCCCeEEEEeCCC
Confidence 999554 445668999999874
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-10 Score=86.07 Aligned_cols=152 Identities=11% Similarity=0.064 Sum_probs=104.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcC--CCceeeeecccccceEEEEEE----eCCCEEEEecC-CCeEEEEEeCCccccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLM----KNGRKVVCGSQ-SGTVLLYSWGYFKDCS 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~~~d~~~~~~~~ 73 (188)
+.|||||+++++++.++.|.+||+. +++.+..+.. ......++|+ |+|+++++++. .+++.++|..+ .+.+
T Consensus 202 v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t-~~~~ 279 (567)
T 1qks_A 202 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPK 279 (567)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEE
T ss_pred eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC-CcEE
Confidence 4689999999999999999999995 7777777764 3346799999 69998887665 48899999754 2222
Q ss_pred ceeee---------------------cc---------------------------------CCceeEE-eecCCCEEEEe
Q 029743 74 DRFVG---------------------LS---------------------------------PNSVDAL-LKLDEDRVITG 98 (188)
Q Consensus 74 ~~~~~---------------------~~---------------------------------~~~v~~~-~~~~~~~l~~~ 98 (188)
+.+.- .+ ......+ |+|+|++++++
T Consensus 280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va 359 (567)
T 1qks_A 280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA 359 (567)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE
Confidence 22210 00 0112244 78899988765
Q ss_pred c-CCCeEEEEecccCeeeeeccc-CCC-cceeEEE-eeCCCCEE-EEEe-CCCcEEEEeCCC
Q 029743 99 S-ENGLISLVGILPNRIIQPIAE-HSE-YPIESLA-LSHDRKFL-GSIS-HDSMLKLWDLDD 154 (188)
Q Consensus 99 ~-~d~~v~~~d~~~~~~~~~~~~-~~~-~~v~~~~-~~~~~~~l-~~~~-~d~~i~iwd~~~ 154 (188)
. .++.|.++|+.+++.+..+.. ... .+-..+. ++|++..+ ++.. .++.|.++|..+
T Consensus 360 ~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 360 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred eCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 5 678999999999987766544 111 0112233 58875544 4443 468999999886
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-10 Score=81.51 Aligned_cols=145 Identities=7% Similarity=0.027 Sum_probs=102.5
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC-----
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP----- 81 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----- 81 (188)
++.+++...++.|.++|..+++.+..+. .......++++++++..++...++.|.+||..+ ......+.. ..
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~-g~~~~~~ 130 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYIEC-PDMDMES 130 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEEEC-TTCCTTT
T ss_pred CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEEEc-CCccccC
Confidence 3444555557899999999999888775 346788999999985444444789999999876 344444442 22
Q ss_pred CceeEEeecCCCEEEEec--CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC----------CcEEE
Q 029743 82 NSVDALLKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD----------SMLKL 149 (188)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~i 149 (188)
.....+.. ++..++++. .++.|.++|+.+++.+..+... . ....++++|+|++++++..+ +.|.+
T Consensus 131 ~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~ 207 (328)
T 3dsm_A 131 GSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-I-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYR 207 (328)
T ss_dssp CBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-S-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEE
T ss_pred CCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-C-CccceEEcCCCCEEEEECCCccCCccccCCceEEE
Confidence 13444522 344554444 4889999999999888777654 2 46789999999877776554 78999
Q ss_pred EeCCCccC
Q 029743 150 WDLDDILK 157 (188)
Q Consensus 150 wd~~~~~~ 157 (188)
+|..+...
T Consensus 208 id~~t~~v 215 (328)
T 3dsm_A 208 IDAETFTV 215 (328)
T ss_dssp EETTTTEE
T ss_pred EECCCCeE
Confidence 99987653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-10 Score=88.93 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=101.5
Q ss_pred CeeecccCeEEEEeCCCc--------------EEEEEcCCCce----eeeecccccceEEEEEEeCCCEEEEecCC----
Q 029743 1 MTFAADAMKLLGTSGDGT--------------LSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQS---- 58 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~--------------i~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 58 (188)
++|+|| +.|+.+..++. |++|++.++.. +.....+...+..+.|+|+|++|+..+.+
T Consensus 214 ~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 292 (741)
T 1yr2_A 214 LAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDP 292 (741)
T ss_dssp CEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCS
T ss_pred EEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCC
Confidence 479999 99988876554 88999877642 22222333458899999999988877654
Q ss_pred -CeEEEEEeCCcccc-cceeeeccCCceeEEeecCCCEEEEecC----CCeEEEEecccC--eeeeecccCCCcceeEEE
Q 029743 59 -GTVLLYSWGYFKDC-SDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGILPN--RIIQPIAEHSEYPIESLA 130 (188)
Q Consensus 59 -~~i~~~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~v~~~d~~~~--~~~~~~~~~~~~~v~~~~ 130 (188)
..|++||+..+... ...+.. +.......++|+|+.|+..+. ++.|.+||+.++ .....+..+.. .+..+.
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~ 370 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIP-DLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVG 370 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEE
T ss_pred cceEEEEECCCCCCcccEEecC-CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEE
Confidence 38999999753223 556665 555555556789998887765 345999998874 33333444433 567788
Q ss_pred eeCCCCEEEEEeCCCcEEEEeCC
Q 029743 131 LSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 131 ~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
+. ++..+++...++..+||.+.
T Consensus 371 ~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 371 IA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EE-BTEEEEEEEETTEEEEEEEE
T ss_pred EE-CCEEEEEEEECCEEEEEEEe
Confidence 87 55677788888877776543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-09 Score=77.03 Aligned_cols=146 Identities=8% Similarity=-0.002 Sum_probs=102.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCce-eeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce-eee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~ 78 (188)
++++++++++++...++.|..|+.. ++. ...+......+.++++.++++.+++...++.|..||. . +..... ...
T Consensus 62 i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~-g~~~~~~~~~ 138 (299)
T 2z2n_A 62 LTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D-GKIREYELPN 138 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEEEECSS
T ss_pred EEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-C-CCEEEecCCC
Confidence 3567888877776667889999976 332 2222234457899999999988888777889999987 3 222211 122
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeee-cccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
....+..+ +.++|+++++...++.|..||. +++.... +..... .+..+++.+++..+++...++.|.+|+.
T Consensus 139 -~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 139 -KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPAS-GPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp -TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred -CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCC-cceeEEECCCCCEEEEccCCceEEEECC
Confidence 33456777 6889988887777889999998 6654432 222223 5789999999987776666889999998
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-09 Score=75.79 Aligned_cols=147 Identities=5% Similarity=-0.060 Sum_probs=103.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeee-ecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce-eee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~ 78 (188)
++++|+++++++...++.|.+|+. +++.... .......+..+++.++++..++...++.|..||. . +..... +..
T Consensus 104 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~ 180 (299)
T 2z2n_A 104 ITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITEFKIPT 180 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEEEECSS
T ss_pred eEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEEeeCCC
Confidence 356788887777767789999998 5544322 2334457899999999988887777789999987 3 333221 222
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeee-cccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
....+..+ +.++|+++++...++.|.+|+. ++..... +..+.. .+.+++++++|+.+++...++.|..||..
T Consensus 181 -~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 181 -PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNA-RPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp -TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred -CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCC-CceeEEECCCCCEEEeccCCceEEEECCC
Confidence 33456677 6889987777777889999998 6653322 222323 68899999999876666577899999984
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=8.4e-10 Score=80.66 Aligned_cols=144 Identities=10% Similarity=-0.067 Sum_probs=102.5
Q ss_pred eecccCeEEEEeC-----CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec----------CCCeEEEEEeC
Q 029743 3 FAADAMKLLGTSG-----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWG 67 (188)
Q Consensus 3 ~s~~~~~l~~~~~-----d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~ 67 (188)
..|+++.++.... ++.|.++|..+++.+..++.-..+ . ++++|+|+++++++ .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4689999988865 579999999999998888744444 4 99999999988776 35689999997
Q ss_pred CcccccceeeeccC-------CceeEE-eecCCCEEEEecC--CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE
Q 029743 68 YFKDCSDRFVGLSP-------NSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 68 ~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~~--d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 137 (188)
+ .+.+..+.- .. .....+ ++|||++++++.. ++.|.++|+.+++.+.++... + . ...+....+.
T Consensus 118 t-~~v~~~I~v-~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g--~-~~~~P~g~~~ 191 (386)
T 3sjl_D 118 T-LLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D--C-YHIFPTAPDT 191 (386)
T ss_dssp T-CCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S--E-EEEEEEETTE
T ss_pred C-CeEEEEEEC-CCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C--c-ceeecCCCce
Confidence 6 455555532 21 134445 8999999888763 689999999999998888643 2 1 1222223344
Q ss_pred EEEEeCCCcEEEEeCCC
Q 029743 138 LGSISHDSMLKLWDLDD 154 (188)
Q Consensus 138 l~~~~~d~~i~iwd~~~ 154 (188)
+++.+.||.+.+.++.+
T Consensus 192 ~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEEETTSCEEEEECCS
T ss_pred eEEECCCCCEEEEECCC
Confidence 55556666666666654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.6e-10 Score=82.02 Aligned_cols=150 Identities=14% Similarity=0.034 Sum_probs=99.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCC--eEEEEEeCCccccccee--
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRF-- 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~-- 76 (188)
|+|+|+++++++...++.|++||..++......... .... ++|+++++.|+++..++ .|.+++.... .....+
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~-~~~~~~g~ 212 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG-WAPTRIGQ 212 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT-TCEEEEEE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC-ceeEEeee
Confidence 478899987777777789999999887765544432 3334 99999999998888765 7888887532 222223
Q ss_pred --eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeee----cccCCCccee-EEEeeCC-CCEEEEEeCCCcE
Q 029743 77 --VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP----IAEHSEYPIE-SLALSHD-RKFLGSISHDSML 147 (188)
Q Consensus 77 --~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~----~~~~~~~~v~-~~~~~~~-~~~l~~~~~d~~i 147 (188)
.. ....+.++ ++|++..|+.+..++.|+.||..++..... ..+....... .++|+|+ +.++++-...+.|
T Consensus 213 ~~~~-~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I 291 (409)
T 3hrp_A 213 LGST-FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV 291 (409)
T ss_dssp CCTT-SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccch-hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE
Confidence 11 22345556 688555555577788999999887653322 2222221113 8999995 5555565677899
Q ss_pred EEEeCCC
Q 029743 148 KLWDLDD 154 (188)
Q Consensus 148 ~iwd~~~ 154 (188)
+.|+...
T Consensus 292 ~~~~~~g 298 (409)
T 3hrp_A 292 YKITPDG 298 (409)
T ss_dssp EEECTTC
T ss_pred EEEecCC
Confidence 9998764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.23 E-value=8.2e-10 Score=78.25 Aligned_cols=139 Identities=8% Similarity=0.013 Sum_probs=91.6
Q ss_pred CeeecccCeEEEEeCC---------CcEEEEEcCC-CceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeC-C
Q 029743 1 MTFAADAMKLLGTSGD---------GTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWG-Y 68 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d---------~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~-~ 68 (188)
++++|+|+++++.... ..-.+|.+.. ++... +.........++|+|+++.|+ +.+.++.|.+|+++ .
T Consensus 103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~ 181 (297)
T 3g4e_A 103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ 181 (297)
T ss_dssp EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT
T ss_pred EEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCC
Confidence 3578899876654321 2234454432 33322 333344578999999998765 45567899999984 2
Q ss_pred cccc-----cceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEee-CCCCEEEEE
Q 029743 69 FKDC-----SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (188)
Q Consensus 69 ~~~~-----~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 141 (188)
.+.. ...+.. ....+..+ +.++|++.++....+.|..||..+++.+..+..+.. .+++++|. |+++.|..+
T Consensus 182 ~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 182 TGQISNRRSVYKLEK-EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp TCCEEEEEEEEECCG-GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEE
T ss_pred CCcccCcEEEEECCC-CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEE
Confidence 2221 111122 23455667 689998888777788999999988998888877644 68999998 888877555
Q ss_pred e
Q 029743 142 S 142 (188)
Q Consensus 142 ~ 142 (188)
+
T Consensus 260 ~ 260 (297)
T 3g4e_A 260 C 260 (297)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-12 Score=94.48 Aligned_cols=144 Identities=11% Similarity=0.101 Sum_probs=82.1
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC-Cce
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NSV 84 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~v 84 (188)
++..+++++.|+.|+.||..+|+.+..+.. ..+.+..+..++..+++++.|+.|+.||..+ ++.+..+.. +. ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~-~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPF-TIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSC-CHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-Cceeeeeec-cCcccc
Confidence 578899999999999999999999888775 4555555566777888888999999999875 444444332 21 111
Q ss_pred eEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.+. +...+..+++++.++.|+.||.++|+.+..+..+. ...++|++..+++++.++.|+.||.+++...
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 111 11145577788889999999999999888776552 1345668888999999999999999887654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.2e-10 Score=87.34 Aligned_cols=151 Identities=10% Similarity=0.098 Sum_probs=96.2
Q ss_pred eeecccCeEEEEeC-----CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCC-------------eEEE
Q 029743 2 TFAADAMKLLGTSG-----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-------------TVLL 63 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-----d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------~i~~ 63 (188)
+|||||++||.+.. ...|+++|+.+++.+.... +......++|+ |++.|+.+..+. .|++
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence 69999999986532 2579999999988654311 11123678999 999998887763 4999
Q ss_pred EEeCCcccccceeeeccC---CceeEE-eecCCCEEEEec----CCCeEEEEecccCe-eeeecccCCCcceeEEEeeCC
Q 029743 64 YSWGYFKDCSDRFVGLSP---NSVDAL-LKLDEDRVITGS----ENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHD 134 (188)
Q Consensus 64 ~d~~~~~~~~~~~~~~~~---~~v~~~-~~~~~~~l~~~~----~d~~v~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~ 134 (188)
|++.+....-..+..... .....+ ++|+|++|+... ..+.|+++|+.++. ....+..+.+ ..... ++++
T Consensus 213 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~-~~~~~-~~~~ 290 (693)
T 3iuj_A 213 HRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD-ADVSL-VDNK 290 (693)
T ss_dssp EETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS-SCEEE-EEEE
T ss_pred EECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC-ceEEE-Eecc
Confidence 998764332222222021 124455 799999886543 23589999997763 3445555544 34444 6666
Q ss_pred CCEEEEEe-CC---CcEEEEeCCCcc
Q 029743 135 RKFLGSIS-HD---SMLKLWDLDDIL 156 (188)
Q Consensus 135 ~~~l~~~~-~d---~~i~iwd~~~~~ 156 (188)
+..|+..+ .+ +.|..+++.+..
T Consensus 291 g~~l~~~t~~~~~~~~l~~~d~~~~~ 316 (693)
T 3iuj_A 291 GSTLYLLTNRDAPNRRLVTVDAANPG 316 (693)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 66655443 33 578999988754
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-09 Score=77.08 Aligned_cols=145 Identities=13% Similarity=0.015 Sum_probs=99.0
Q ss_pred eeecccC-eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
+|+|+++ ++++...++.|..|+. +++. ..+..+...+..++++++|+++++...++.|.+|+.+ +.. ..+....
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~-~~~~~~~ 125 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQA-HLLVGRY 125 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECEE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--CCE-EEEEecc
Confidence 6899998 5566667789999997 4443 3444456678999999999977776666789999874 232 2222101
Q ss_pred ----CCceeEE-eecCCCEEEE----ecC-------------CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE
Q 029743 81 ----PNSVDAL-LKLDEDRVIT----GSE-------------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 81 ----~~~v~~~-~~~~~~~l~~----~~~-------------d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
...+..+ +.|+|+++++ |.. .+.|..+|..+++..... .. . ....++|+|+++.|
T Consensus 126 ~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~-~-~p~gl~~spdg~~l 202 (305)
T 3dr2_A 126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL-D-HPNGLAFSPDEQTL 202 (305)
T ss_dssp TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE-S-SEEEEEECTTSSEE
T ss_pred CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC-C-CCcceEEcCCCCEE
Confidence 1234556 7899998886 432 256778887666644333 22 3 56889999999988
Q ss_pred EEEeCC------CcEEEEeCCC
Q 029743 139 GSISHD------SMLKLWDLDD 154 (188)
Q Consensus 139 ~~~~~d------~~i~iwd~~~ 154 (188)
+.+... +.|.+|++..
T Consensus 203 yv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 203 YVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp EEEECCC---CCCEEEEEEEET
T ss_pred EEEecCCcCCCCCEEEEEEecC
Confidence 777654 6899999864
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.17 E-value=6e-09 Score=76.28 Aligned_cols=142 Identities=8% Similarity=-0.131 Sum_probs=100.0
Q ss_pred ecccCeEEEEeC--CC---cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec----------CCCeEEEEEeCC
Q 029743 4 AADAMKLLGTSG--DG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGY 68 (188)
Q Consensus 4 s~~~~~l~~~~~--d~---~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~ 68 (188)
.|++++++.... .. .|.++|..+++.+..++....+ .++++|++++++++. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 477888877764 23 7899999999888777743333 999999999999886 357899999875
Q ss_pred cccccceeeecc-------CCceeEE-eecCCCEEEEecC--CCeEEEEecccCeeeee-cccCCCcceeEEEeeCCC-C
Q 029743 69 FKDCSDRFVGLS-------PNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDR-K 136 (188)
Q Consensus 69 ~~~~~~~~~~~~-------~~~v~~~-~~~~~~~l~~~~~--d~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~ 136 (188)
.+.+..+.- . ......+ ++|+|++|++++. ++.|.++| .+++.+.. +... + ++.+.|++ +
T Consensus 107 -~~~~~~i~~-~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~----~~~~~~~~~~ 178 (373)
T 2mad_H 107 -FLPIADIEL-PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T----CYHIHPGAPS 178 (373)
T ss_pred -CcEEEEEEC-CCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c----eEEEEeCCCc
Confidence 344443322 1 1223455 7999999998874 57899999 99988877 6543 2 23455555 3
Q ss_pred EEEEEeCCCcEEEEeCCCcc
Q 029743 137 FLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~ 156 (188)
.+++.+.||.+.+++. +..
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCc
Confidence 4456667888888888 443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.17 E-value=8e-09 Score=73.14 Aligned_cols=151 Identities=9% Similarity=0.051 Sum_probs=98.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecc----cccceEEEEEEeCCCEEEEecC---------CCeEEEEEeC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF----SEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWG 67 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~ 67 (188)
++++|+|+++++ . ++.|.+||..+++....... ....+..++++|+|++.++... .....+|.+.
T Consensus 59 i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d 136 (297)
T 3g4e_A 59 VALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF 136 (297)
T ss_dssp EEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC
T ss_pred EEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE
Confidence 467899985554 3 56899999987765432221 1245789999999997665432 2335666665
Q ss_pred CcccccceeeeccCCceeEE-eecCCCEEE-EecCCCeEEEEec--ccCee-----eeecccCCCcceeEEEeeCCCCEE
Q 029743 68 YFKDCSDRFVGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGI--LPNRI-----IQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~-~~~~d~~v~~~d~--~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
..+.. ..+.. .......+ ++|+++.++ +.+.++.|.+|++ .++.. ...+..... .+..+++.++|++.
T Consensus 137 ~~g~~-~~~~~-~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 137 PDHHV-KKYFD-QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCIDAEGKLW 213 (297)
T ss_dssp TTSCE-EEEEE-EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEBTTSCEE
T ss_pred CCCCE-EEEee-ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEECCCCCEE
Confidence 43332 22333 33445667 799998765 4556789999987 34432 222332223 57889999999877
Q ss_pred EEEeCCCcEEEEeCCCcc
Q 029743 139 GSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~ 156 (188)
++....+.|.+||..++.
T Consensus 214 va~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 214 VACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp EEEETTTEEEEECTTTCC
T ss_pred EEEcCCCEEEEEcCCCce
Confidence 777778889999998654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.4e-09 Score=72.25 Aligned_cols=147 Identities=8% Similarity=0.035 Sum_probs=102.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceee-eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~- 78 (188)
|+++++|++.++...++.|.+|+.. ++... .+......+.++++.++++..++...++.|..+|.. +.. ..+..
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~-~~~~~~ 100 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGF-TEYPLP 100 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECS
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CCe-EEecCC
Confidence 3567888877776678899999987 54433 222334678999999999888877777889999875 232 22221
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeee-ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.....+..+ +.++|+++++...++.|..++.. ++... .+..... .+..+++.++++.+++...++.|..|+..
T Consensus 101 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~-~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 175 (300)
T 2qc5_A 101 QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS-YPAFITLGSDNALWFTENQNNSIGRITNT 175 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC-CEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC-CceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 023456777 68899888887778899999987 55432 2332223 68899999999866666667889999873
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-09 Score=82.29 Aligned_cols=151 Identities=7% Similarity=0.007 Sum_probs=102.2
Q ss_pred CeeecccCeEEEEeCCC-------------cEEEEEcCCCce----eeeecc-cccceEEEEEEeCCCEEEEecC----C
Q 029743 1 MTFAADAMKLLGTSGDG-------------TLSVCNLRKNTV----QTRSEF-SEEELTSVVLMKNGRKVVCGSQ----S 58 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~-------------~i~i~~~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----d 58 (188)
++|+ |++.|+.+..+. .|++|++.++.. +..... |......+.|+|+|++|+.... .
T Consensus 180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSG 258 (693)
T ss_dssp CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSC
T ss_pred EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCC
Confidence 4799 999999888774 389999877542 222233 4455788999999998865432 3
Q ss_pred CeEEEEEeCCcccccceeeeccCCceeEEeecCCCEEEEec-C---CCeEEEEecccCee--eeecccCCCcceeEEEee
Q 029743 59 GTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS-E---NGLISLVGILPNRI--IQPIAEHSEYPIESLALS 132 (188)
Q Consensus 59 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~---d~~v~~~d~~~~~~--~~~~~~~~~~~v~~~~~~ 132 (188)
..|+++|+.........+.. +.......++++|..|+..+ . .+.|..+++.++.. ...+..+.. .+. .|+
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s 334 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG-DLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVH 334 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEE
T ss_pred cEEEEEECCCCCCceEEEeC-CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEE
Confidence 58999998764335666666 66655555777666655443 3 36799999987654 234545544 343 889
Q ss_pred CCCCEEEEEeCCC---cEEEEeCCCcc
Q 029743 133 HDRKFLGSISHDS---MLKLWDLDDIL 156 (188)
Q Consensus 133 ~~~~~l~~~~~d~---~i~iwd~~~~~ 156 (188)
+++++|+....++ .|++|++....
T Consensus 335 ~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 335 SGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred EECCEEEEEEEECCeeEEEEEECCCCe
Confidence 9998887666443 68999987543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-08 Score=75.87 Aligned_cols=148 Identities=9% Similarity=0.057 Sum_probs=99.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeee----ecccccce-E-EEEEEeC-CCEEEEecCCCeEEEEEeCCccccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR----SEFSEEEL-T-SVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~----~~~~~~~v-~-~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~ 73 (188)
++++|++..|+.+..++.|+.|+..++..... ..++...- . .++|+|+ +.++++-..++.|+.|+.+. . .
T Consensus 224 iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g--~-~ 300 (409)
T 3hrp_A 224 VALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG--E-C 300 (409)
T ss_dssp CEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC--C-E
T ss_pred EEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC--C-E
Confidence 46888555566677788999999887654322 12222222 3 9999995 56666666778899998753 2 3
Q ss_pred ceeeeccC---------------CceeEE-eecCCCEEEEec-CCCeEEEEecccCeeeeecccCC--------------
Q 029743 74 DRFVGLSP---------------NSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHS-------------- 122 (188)
Q Consensus 74 ~~~~~~~~---------------~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~-------------- 122 (188)
..+.+ +. .....+ ++|+|+++++-. .++.|+.|++.++... ++.++.
T Consensus 301 ~~~~g-~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~ 378 (409)
T 3hrp_A 301 EWFCG-SATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEAT 378 (409)
T ss_dssp EEEEE-CTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCC
T ss_pred EEEEe-CCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceE
Confidence 33333 22 235667 799999888877 8899999997777643 332220
Q ss_pred CcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 123 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
-.....+++++++.++++-..++.|+.++++
T Consensus 379 ~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 379 FNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp BSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred eCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 0147899999998777777788888887753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-08 Score=71.07 Aligned_cols=146 Identities=7% Similarity=-0.008 Sum_probs=100.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceee-eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce-eeec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~ 79 (188)
+++++++++++...++.|..+|.. ++... .+......+.++++.++++..++...++.|..++.. +..... +..
T Consensus 68 ~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~- 143 (300)
T 2qc5_A 68 IVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIYEYDLPN- 143 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEEEEECSS-
T ss_pred EECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEEEccCCC-
Confidence 567788877766667889999987 54432 222234678999999999888887778889888875 232211 222
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeee-ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
....+..+ +.++|+++++...++.|..++. +++... .+..... .+..+++.+++..+++....+.|.+|+..
T Consensus 144 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 144 KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAA-APVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCC-CcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 23456777 6889997777777888999998 554432 2222222 58899999999877766667789999983
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=7.1e-10 Score=80.86 Aligned_cols=160 Identities=9% Similarity=-0.076 Sum_probs=109.7
Q ss_pred CeeecccCeEEEEe----------CCCcEEEEEcCCCceeeeeccc-------ccceEEEEEEeCCCEEEEecC--CCeE
Q 029743 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS-------EEELTSVVLMKNGRKVVCGSQ--SGTV 61 (188)
Q Consensus 1 l~~s~~~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i 61 (188)
+.++||+++++++. .++.|.+||..+++.+..+... ......++++|||++++++.. ...+
T Consensus 70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v 149 (368)
T 1mda_H 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeE
Confidence 47899999999886 3688999999999988887633 134678999999999988764 3567
Q ss_pred EE--EEeCC------c----------------------------------cccc--------------------------
Q 029743 62 LL--YSWGY------F----------------------------------KDCS-------------------------- 73 (188)
Q Consensus 62 ~~--~d~~~------~----------------------------------~~~~-------------------------- 73 (188)
.+ +|..+ . +...
T Consensus 150 ~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs 229 (368)
T 1mda_H 150 GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229 (368)
T ss_dssp EEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred EEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc
Confidence 77 66521 0 0000
Q ss_pred ----ceeeec-cC---------------------CceeEE-eecCCCEEEEecC---------CCeEEEEecccCeeeee
Q 029743 74 ----DRFVGL-SP---------------------NSVDAL-LKLDEDRVITGSE---------NGLISLVGILPNRIIQP 117 (188)
Q Consensus 74 ----~~~~~~-~~---------------------~~v~~~-~~~~~~~l~~~~~---------d~~v~~~d~~~~~~~~~ 117 (188)
..+... .. .....+ ++|++++++++.. .+.+.++|+.+.+.+..
T Consensus 230 ~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~ 309 (368)
T 1mda_H 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309 (368)
T ss_dssp SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred CCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE
Confidence 000000 00 000114 6888888876533 23566999999999888
Q ss_pred cccCCCcceeEEEeeCCCCE-EEEEe-CCCcEEEEeCCCccCCCCCC
Q 029743 118 IAEHSEYPIESLALSHDRKF-LGSIS-HDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 118 ~~~~~~~~v~~~~~~~~~~~-l~~~~-~d~~i~iwd~~~~~~~~~~~ 162 (188)
+... . ....++|+||+++ +++.. .++.|.++|+.+.+....++
T Consensus 310 i~vg-~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 310 ISNG-H-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EECC-C-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 8765 3 5889999999985 45555 58999999999987654443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-08 Score=70.79 Aligned_cols=150 Identities=10% Similarity=0.078 Sum_probs=96.4
Q ss_pred Ceeecc-cCeEEEEeCCCcEEEEEcCCCceeee-ecc----cccceEEEEEEeCCCEEEEecCC---------------C
Q 029743 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTR-SEF----SEEELTSVVLMKNGRKVVCGSQS---------------G 59 (188)
Q Consensus 1 l~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------~ 59 (188)
++++++ ++++++ +..+.|.+|+.. ++.... ... ....+.++++.++|+..++...+ +
T Consensus 76 i~~~~~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC
Confidence 357788 655544 444579999988 665433 221 12357899999999887776654 4
Q ss_pred eEEEEEeCCcccccceeeeccCCceeEE-ee----cCCCEEEEe-cCCCeEEEEecc-cCe-----eeeecccCCCccee
Q 029743 60 TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LK----LDEDRVITG-SENGLISLVGIL-PNR-----IIQPIAEHSEYPIE 127 (188)
Q Consensus 60 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~----~~~~~l~~~-~~d~~v~~~d~~-~~~-----~~~~~~~~~~~~v~ 127 (188)
.|..++.. +... .+.. +......+ ++ |+++.++.+ ..++.|.+|++. ++. ....+..+....+.
T Consensus 154 ~l~~~~~~--g~~~-~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD--GQMI-QVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 229 (314)
T ss_dssp EEEEECTT--SCEE-EEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred eEEEECCC--CCEE-Eecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCC
Confidence 55555543 3322 2222 33345666 78 998765544 567899999986 343 22333333202578
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 128 SLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 128 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
.++++++|+++++...++.|.+||.++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence 89999999888877778899999988544
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-08 Score=75.38 Aligned_cols=158 Identities=13% Similarity=0.133 Sum_probs=100.3
Q ss_pred CeeecccCeEEEEeC--CCcEEEEEcCCCceeeeeccccc-------ceEEEEEEeCCCEEEEe----------------
Q 029743 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEE-------ELTSVVLMKNGRKVVCG---------------- 55 (188)
Q Consensus 1 l~~s~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~---------------- 55 (188)
++|+|||++|+++.. ++.|.++|+.+++.+..++-... ....+.++++|++++..
T Consensus 182 ~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 182 NALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT 261 (426)
T ss_dssp SEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred EEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence 579999999999874 57899999999887776653110 01123344444443332
Q ss_pred ---------------------cCCCeEEEEEeCCccc-ccceeee---------ccCCceeEE-eecCCCEEEEecC---
Q 029743 56 ---------------------SQSGTVLLYSWGYFKD-CSDRFVG---------LSPNSVDAL-LKLDEDRVITGSE--- 100 (188)
Q Consensus 56 ---------------------~~d~~i~~~d~~~~~~-~~~~~~~---------~~~~~v~~~-~~~~~~~l~~~~~--- 100 (188)
...+.+.+.|+..... ....+.- ........+ ++|+++++++...
T Consensus 262 ~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~ 341 (426)
T 3c75_H 262 EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRD 341 (426)
T ss_dssp TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECC
T ss_pred CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccc
Confidence 2334445555432110 0000000 000111124 6889887776642
Q ss_pred -------CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEEEe-CCCcEEEEeCCCccCCCC
Q 029743 101 -------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 101 -------d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~~ 160 (188)
.+.|.++|+.+.+.+..+... . ....++|+||++ ++++.. .++.|.++|+.+.+....
T Consensus 342 ~gthk~~s~~VsVID~~T~kvv~~I~vg-~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGERINKIELG-H-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred cccccCCCCEEEEEECCCCeEEEEEECC-C-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 357999999999999888755 2 478999999999 888777 589999999998876543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=9.2e-09 Score=75.20 Aligned_cols=151 Identities=11% Similarity=-0.019 Sum_probs=100.2
Q ss_pred CeeecccCeEEEEe----------CCCcEEEEEcCCCceeeeeccc-------ccceEEEEEEeCCCEEEEecC--CCeE
Q 029743 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS-------EEELTSVVLMKNGRKVVCGSQ--SGTV 61 (188)
Q Consensus 1 l~~s~~~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i 61 (188)
+++||||++++++. .++.|.+||..+++.+..+.-. ......++++|||++++++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 47899999998876 3578999999999888776522 124668999999999988864 6899
Q ss_pred EEEEeCCcccccceeeeccCCceeEEeecCCCEEEEecCCCeEEEEeccc-CeeeeecccCC---Cccee-EEEee-CCC
Q 029743 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHS---EYPIE-SLALS-HDR 135 (188)
Q Consensus 62 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~---~~~v~-~~~~~-~~~ 135 (188)
.++|+.+ .+.+..+.- .. ...++....+.+++.+.||.+.+.++.+ ++......... ..++. ...|. ++|
T Consensus 163 sVID~~t-~~vv~tI~v-~g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 163 GVVDLEG-KAFKRMLDV-PD--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEETTT-TEEEEEEEC-CS--EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEECCC-CcEEEEEEC-CC--cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 9999986 455555543 21 1122333445677778888888888865 44322111110 11222 24664 577
Q ss_pred CEEEEEeCCCcEEEEeCCCcc
Q 029743 136 KFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+++. .+.++.|++.|+.+..
T Consensus 239 ~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 239 RLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp EEEE-EBTTSEEEEEECTTSS
T ss_pred cEEE-EeCCCEEEEEECCCCc
Confidence 5554 5568999999997653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=8.1e-08 Score=68.93 Aligned_cols=148 Identities=7% Similarity=0.069 Sum_probs=93.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecc----cccceEEEEEEeCCCEEEEecCC----CeEEEEEeCCcccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF----SEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFKDC 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~ 72 (188)
++++|+|+++++. . ..|.+||..+++....... ....+..++++|+|+++++...+ ....+|.++. +..
T Consensus 95 i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~-g~~ 171 (326)
T 2ghs_A 95 LAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKV 171 (326)
T ss_dssp EEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEE
T ss_pred EEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC-CcE
Confidence 3578888877764 3 4599999888765432221 12358899999999876654321 2234444432 332
Q ss_pred cceeeeccCCceeEE-eecCCCEEEEe-cCCCeEEEEecc--cC-ee-----eeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 73 SDRFVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGIL--PN-RI-----IQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~v~~~d~~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
..+.. .......+ ++|+++.++.+ +.++.|.+|++. ++ .. ...+..... .+..+++.++|.+.++..
T Consensus 172 -~~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi~~d~~G~lwva~~ 248 (326)
T 2ghs_A 172 -TKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCDAEGHIWNARW 248 (326)
T ss_dssp -EEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEECTTSCEEEEEE
T ss_pred -EEeeC-CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCC-CCCeeEECCCCCEEEEEe
Confidence 22323 33345566 79999876554 567899999986 55 31 222322223 567899999998777666
Q ss_pred CCCcEEEEeCCC
Q 029743 143 HDSMLKLWDLDD 154 (188)
Q Consensus 143 ~d~~i~iwd~~~ 154 (188)
.++.|.+|+...
T Consensus 249 ~~~~v~~~d~~g 260 (326)
T 2ghs_A 249 GEGAVDRYDTDG 260 (326)
T ss_dssp TTTEEEEECTTC
T ss_pred CCCEEEEECCCC
Confidence 678899999843
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-08 Score=72.07 Aligned_cols=143 Identities=7% Similarity=0.054 Sum_probs=91.5
Q ss_pred CeeecccCeEEE----EeC-------------CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-----
Q 029743 1 MTFAADAMKLLG----TSG-------------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----- 58 (188)
Q Consensus 1 l~~s~~~~~l~~----~~~-------------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 58 (188)
++++|+|++.++ |.. .+.|+.++..+++..... .......++|+|+++.|+.+...
T Consensus 136 i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~ 213 (305)
T 3dr2_A 136 LIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHG 213 (305)
T ss_dssp EEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---C
T ss_pred EEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCC
Confidence 357888887775 331 246777777666554333 34456889999999988777665
Q ss_pred -CeEEEEEeCCcc-cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC
Q 029743 59 -GTVLLYSWGYFK-DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 59 -~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 135 (188)
+.|.+|++...+ .....+..........+ +.++|++. ++..+ .|.+|+. .++.+..+..+ . .+.+++|.+++
T Consensus 214 ~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~-~g~~~~~~~~~-~-~~~~~~f~~d~ 288 (305)
T 3dr2_A 214 SVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS-DGQLLGHIPTP-G-TASNCTFDQAQ 288 (305)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEECT-TSCEEEEEECS-S-CCCEEEECTTS
T ss_pred CCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEECC-CCCEEEEEECC-C-ceeEEEEeCCC
Confidence 689999986432 00011111012234455 68889844 44444 4999997 56666677655 3 58899999999
Q ss_pred CEEEEEeCCCcEEEEe
Q 029743 136 KFLGSISHDSMLKLWD 151 (188)
Q Consensus 136 ~~l~~~~~d~~i~iwd 151 (188)
+.|..++.++ +..++
T Consensus 289 ~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 289 QRLFITGGPC-LWMLP 303 (305)
T ss_dssp CEEEEEETTE-EEEEE
T ss_pred CEEEEEcCCe-EEEEE
Confidence 8888777654 44333
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-07 Score=66.21 Aligned_cols=156 Identities=9% Similarity=0.007 Sum_probs=103.9
Q ss_pred CeeecccCeEEEEeC--CCcEEEEEcCCCceeeeecc-cccceEEEEEEeCCCEEEE-ecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
|+|+|++.+.++.+. ++.|+++|+.+++.+..+.- .......+++. ++.|+. .-.++.+.++|..+ .+.+..+
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t-~~v~~~i 102 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRT-LSNIKNF 102 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTT-TEEEEEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCC-CcEEEEE
Confidence 468888655454443 58999999999998887652 11223345554 555554 44578999999876 4566666
Q ss_pred eeccCCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCC-Cc---ceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EY---PIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~---~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.. . .+...-.+++|+.++++..++.|.++|..+.+.+..+.... +. .++.+.|. ++...+....++.|.+.|.
T Consensus 103 ~~-g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~ 179 (266)
T 2iwa_A 103 TH-Q-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISA 179 (266)
T ss_dssp EC-C-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred EC-C-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEEC
Confidence 53 3 11111156788888877788999999999988777665321 11 35678888 6755555556789999999
Q ss_pred CCccCCCCCC
Q 029743 153 DDILKGSGNN 162 (188)
Q Consensus 153 ~~~~~~~~~~ 162 (188)
.+++....+.
T Consensus 180 ~tg~V~~~I~ 189 (266)
T 2iwa_A 180 KDGTLLGWIL 189 (266)
T ss_dssp TTCCEEEEEE
T ss_pred CCCcEEEEEE
Confidence 9887554443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=7.1e-08 Score=69.22 Aligned_cols=136 Identities=12% Similarity=0.056 Sum_probs=87.7
Q ss_pred eeecccCeEEEEeC------CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeC-Ccc-cc
Q 029743 2 TFAADAMKLLGTSG------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWG-YFK-DC 72 (188)
Q Consensus 2 ~~s~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~-~~~-~~ 72 (188)
+++|+|+++++... .+.|+.++ +++... +.........++|+|+++.++.+ ..++.|.+|+++ ..+ ..
T Consensus 140 ~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~ 216 (326)
T 2ghs_A 140 RMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT 216 (326)
T ss_dssp EECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred EECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcc
Confidence 57889987665432 24566666 454432 32233456799999999876554 556899999985 112 21
Q ss_pred --cceeeec--cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEee-CCCCEEEEEe
Q 029743 73 --SDRFVGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSIS 142 (188)
Q Consensus 73 --~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 142 (188)
.+.+... ....+..+ +.++|.++++...++.|.+|+. +++.+..+..+.. .+.+++|. ++++.|+.++
T Consensus 217 ~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 217 GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred cCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEe
Confidence 1122110 22345566 6889987777666788999998 5666666665544 68999998 8887775544
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.1e-11 Score=88.29 Aligned_cols=144 Identities=11% Similarity=0.003 Sum_probs=77.8
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeeccccc-ceE-EEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
..+++.+++++.|+.|+.||.++++.+.....+.. .+. +.... .+..+++++.++.++.||..+ ++.+..+.. +.
T Consensus 46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~-~~ 122 (369)
T 2hz6_A 46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSS-AF 122 (369)
T ss_dssp ----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------
T ss_pred EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCC-CcEEEEecC-CC
Confidence 34666777778999999999988877655543211 111 11111 345677888899999999986 455555544 32
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC---CEEEEEeCCCcEEEEeCCCccC
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR---KFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.. ++|++..+++++.++.|+.||.++++.+..+... .....++..+. ..+++++.++.|+.||.+++..
T Consensus 123 ----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 123 ----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp --------------EEEEEEEEEEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred ----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 12 4678889999999999999999999877665432 12333444432 4577788899999999987654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-08 Score=73.47 Aligned_cols=113 Identities=9% Similarity=-0.092 Sum_probs=84.7
Q ss_pred cccCeEEEEeCC-----CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec----------CCCeEEEEEeCCc
Q 029743 5 ADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGYF 69 (188)
Q Consensus 5 ~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~ 69 (188)
|+++.+++.... +.|.++|..+++.+..++.-..+ .++++|++++++++. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t- 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT- 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence 467777766553 69999999999999888844444 899999999988876 366899999876
Q ss_pred ccccceeeecc-------CCceeEE-eecCCCEEEEecC--CCeEEEEecccCeeeeecccC
Q 029743 70 KDCSDRFVGLS-------PNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEH 121 (188)
Q Consensus 70 ~~~~~~~~~~~-------~~~v~~~-~~~~~~~l~~~~~--d~~v~~~d~~~~~~~~~~~~~ 121 (188)
.+.+..+.- . ......+ ++|+|++++++.. ++.|.+.|+.+++.+..+...
T Consensus 159 ~~vv~~I~v-~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~ 219 (426)
T 3c75_H 159 FLPIADIEL-PDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP 219 (426)
T ss_dssp CCEEEEEEE-TTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred CcEEEEEEC-CCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC
Confidence 355554432 1 1223344 7999999998763 678999999999988877653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-07 Score=68.34 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=93.4
Q ss_pred CeeecccCeEEEEeC--CCcEEEEEcCCCceeeeec-------ccccceEEEEEEeCCCEEEEecC-----CCeEEEEEe
Q 029743 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSE-------FSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSW 66 (188)
Q Consensus 1 l~~s~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~ 66 (188)
++++|+|+.+++... ++.++||.+.+++.. .++ .+-..+..++++++++++++-.. +..|.+||+
T Consensus 22 va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 22 ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp EEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred EEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence 468899998888642 342444544455432 221 24467899999999876665433 578999998
Q ss_pred CCcccccceeee-----ccCCceeEE-eecCCCEE-EEec---CCCeEEEEecccCeeeeecccCC--------------
Q 029743 67 GYFKDCSDRFVG-----LSPNSVDAL-LKLDEDRV-ITGS---ENGLISLVGILPNRIIQPIAEHS-------------- 122 (188)
Q Consensus 67 ~~~~~~~~~~~~-----~~~~~v~~~-~~~~~~~l-~~~~---~d~~v~~~d~~~~~~~~~~~~~~-------------- 122 (188)
.+ ++.+..+.. .+...+..+ +++++..+ ++.. .++.|.+||+.+++..+.+.+|.
T Consensus 101 ~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~ 179 (343)
T 2qe8_A 101 LN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV 179 (343)
T ss_dssp TT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE
T ss_pred CC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCE
Confidence 75 344444432 012234666 68765444 4544 57889999998777655443310
Q ss_pred --------------CcceeEEEeeCCCCEEEEEeCCC-cEEEEe
Q 029743 123 --------------EYPIESLALSHDRKFLGSISHDS-MLKLWD 151 (188)
Q Consensus 123 --------------~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd 151 (188)
...+..++|+|+++.|+.+...+ .|..++
T Consensus 180 ~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 180 PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred EEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 01257899999999888777655 555544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-08 Score=72.20 Aligned_cols=146 Identities=6% Similarity=-0.024 Sum_probs=91.1
Q ss_pred CeeecccCeEEEE-e---CCCcEEEEEcCCCceeeeecccc-----------------------------cceEEEEEEe
Q 029743 1 MTFAADAMKLLGT-S---GDGTLSVCNLRKNTVQTRSEFSE-----------------------------EELTSVVLMK 47 (188)
Q Consensus 1 l~~s~~~~~l~~~-~---~d~~i~i~~~~~~~~~~~~~~~~-----------------------------~~v~~~~~~~ 47 (188)
++++|++..++.+ . .++.|.+||+.+++..+.+.+|. ..+..++|+|
T Consensus 125 v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~ 204 (343)
T 2qe8_A 125 LAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA 204 (343)
T ss_dssp EEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT
T ss_pred EEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc
Confidence 3567755455444 3 56899999998776655443321 2358899999
Q ss_pred CCCEEEEecCCC-eEEEEEeCC--c-----ccccc--eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeee
Q 029743 48 NGRKVVCGSQSG-TVLLYSWGY--F-----KDCSD--RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ 116 (188)
Q Consensus 48 ~~~~l~~~~~d~-~i~~~d~~~--~-----~~~~~--~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~ 116 (188)
+++.|+.+...+ .+..++... . .+... ...+ +......+ ++++|.++++...++.|.+||..+++...
T Consensus 205 dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~ 283 (343)
T 2qe8_A 205 ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS-EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKL 283 (343)
T ss_dssp TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE-ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc-cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEE
Confidence 999888877665 444444321 0 00011 1123 33344556 68999999998899999999985565433
Q ss_pred ecccCCCcceeEEEeeCCCCEEEEEeCCCcE
Q 029743 117 PIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (188)
Q Consensus 117 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 147 (188)
.........+.+++|.+++.++++.+..+.+
T Consensus 284 ~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 284 LVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred EEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 3222111257899999998877776644444
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-07 Score=69.61 Aligned_cols=150 Identities=11% Similarity=0.015 Sum_probs=100.7
Q ss_pred eeecccCeEEEEeCC------CcEEEEEcCCCceeeeecccc---cceEEEEEEeCCCEEEEec----------------
Q 029743 2 TFAADAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSE---EELTSVVLMKNGRKVVCGS---------------- 56 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~---------------- 56 (188)
..+|+| .++++..+ +.|.++|.++.+.+..+.... ..-..+.|+|+++.++++.
T Consensus 144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 457888 66665544 689999999998888876221 2234688899999888885
Q ss_pred ---CCCeEEEEEeCCcccccceeeeccC--CceeEE-e--ecCCCEEEEec------CCCeEEEEecccCee--eeec--
Q 029743 57 ---QSGTVLLYSWGYFKDCSDRFVGLSP--NSVDAL-L--KLDEDRVITGS------ENGLISLVGILPNRI--IQPI-- 118 (188)
Q Consensus 57 ---~d~~i~~~d~~~~~~~~~~~~~~~~--~~v~~~-~--~~~~~~l~~~~------~d~~v~~~d~~~~~~--~~~~-- 118 (188)
...+|.+||+.. ++.++.+.- .. .....+ | +|+++++++++ .+++|.+|....+.. ...+
T Consensus 223 ~~~~~d~V~v~D~~~-~k~~~tI~v-g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi 300 (462)
T 2ece_A 223 KDRYGNRIHFWDLRK-RKRIHSLTL-GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI 300 (462)
T ss_dssp HHHSCCEEEEEETTT-TEEEEEEES-CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred hhccCCEEEEEECCC-CcEeeEEec-CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence 367999999986 455555543 21 223333 4 99999888777 456787765543321 1110
Q ss_pred ccC---------------CCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCC
Q 029743 119 AEH---------------SEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (188)
Q Consensus 119 ~~~---------------~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (188)
... .+.....+.+++|+++|.++. ..+.|.+||+..
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 000 012468899999999997666 468999999863
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-07 Score=64.10 Aligned_cols=153 Identities=8% Similarity=0.061 Sum_probs=102.8
Q ss_pred eeecccCeEEEEeCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec-CCCeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
.|+ ++.++.+.+.+| .|+++|+++++.+..+.- ..........++++.|+... .++.+.+||..+ .+.+..+..
T Consensus 49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t-~~~~~ti~~ 125 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN-LRQVRSFNY 125 (262)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETTT-CCEEEEEEC
T ss_pred EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-CCccceeEEEEeCCEEEEEEeeCCEEEEEECcc-CcEEEEEEC
Confidence 466 566666666655 899999999998887763 23444433444565665554 578999999976 466666654
Q ss_pred ccCCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCC-Cc---ceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EY---PIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~---~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.... .. +.++++.|+....++.|+++|..+.+.+..+.... +. .++.+.|. +|+..+..-.++.|.+.|.++
T Consensus 126 -~~eG-~g-lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t 201 (262)
T 3nol_A 126 -DGEG-WG-LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPET 201 (262)
T ss_dssp -SSCC-CC-EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT
T ss_pred -CCCc-eE-EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCC
Confidence 2211 22 35677878777778899999999988777765421 11 34567776 676555554678999999998
Q ss_pred ccCCCCC
Q 029743 155 ILKGSGN 161 (188)
Q Consensus 155 ~~~~~~~ 161 (188)
+.....+
T Consensus 202 G~V~~~I 208 (262)
T 3nol_A 202 GKVTGII 208 (262)
T ss_dssp CBEEEEE
T ss_pred CcEEEEE
Confidence 8754443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-07 Score=69.04 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=97.9
Q ss_pred cccCeEEEE-eCCCcEEEEEcCCC----ceeeeec------c-cccceEEEEEEeCCCEEEEecCC------CeEEEEEe
Q 029743 5 ADAMKLLGT-SGDGTLSVCNLRKN----TVQTRSE------F-SEEELTSVVLMKNGRKVVCGSQS------GTVLLYSW 66 (188)
Q Consensus 5 ~~~~~l~~~-~~d~~i~i~~~~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~ 66 (188)
+++++|+.. -.++.|+|+|+.+. +..+++. . -......+...|+| .++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 778887665 45789999998754 5555552 1 11245677888999 66665544 68999998
Q ss_pred CCcccccceeeeccCC---ceeEE-eecCCCEEEEec-------------------CCCeEEEEecccCeeeeecccC-C
Q 029743 67 GYFKDCSDRFVGLSPN---SVDAL-LKLDEDRVITGS-------------------ENGLISLVGILPNRIIQPIAEH-S 122 (188)
Q Consensus 67 ~~~~~~~~~~~~~~~~---~v~~~-~~~~~~~l~~~~-------------------~d~~v~~~d~~~~~~~~~~~~~-~ 122 (188)
.+ .+.+..+.. ... ....+ ++|+++.+++.. ..++|.+||+.+++.+.++... .
T Consensus 172 ~T-~~v~~~~~~-~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 172 YS-FEPLGKWEI-DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp TT-CCEEEECCS-BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred CC-CeEEEEEcc-CCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 76 455666542 212 23345 699999888874 3688999999998877777653 2
Q ss_pred CcceeEEEe--eCCCCEEEEEe------CCCcEEEEeC
Q 029743 123 EYPIESLAL--SHDRKFLGSIS------HDSMLKLWDL 152 (188)
Q Consensus 123 ~~~v~~~~~--~~~~~~l~~~~------~d~~i~iwd~ 152 (188)
+.....+.| +|+++++.+++ .+++|.+|..
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 223455655 99999887666 4567766544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-07 Score=72.32 Aligned_cols=145 Identities=10% Similarity=0.034 Sum_probs=101.1
Q ss_pred cccCeEEEEeC------------------CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCC-------
Q 029743 5 ADAMKLLGTSG------------------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG------- 59 (188)
Q Consensus 5 ~~~~~l~~~~~------------------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------- 59 (188)
|+++++++++. ++.+.+.|.++.+...++.--. ....++++|+|+++++.+.+.
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~ 223 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLP 223 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchh
Confidence 89999988852 3578899999988888776322 457788999999998877543
Q ss_pred -------------------------------eEEEEEeCCc-ccc-cceeeeccCCceeEE-eecCCCEEEEec-CCCeE
Q 029743 60 -------------------------------TVLLYSWGYF-KDC-SDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLI 104 (188)
Q Consensus 60 -------------------------------~i~~~d~~~~-~~~-~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v 104 (188)
.|.+.|.... +.. +..+.. .. ...++ ++|||+++++++ .+.+|
T Consensus 224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~-~PhGv~~sPDGk~v~V~~~~s~~V 301 (595)
T 1fwx_A 224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-AN-NPHGCNMAPDKKHLCVAGKLSPTV 301 (595)
T ss_dssp HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ES-SCCCEEECTTSSEEEEECTTSSBE
T ss_pred hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CC-CceEEEEcCCCCEEEEeCCCCCeE
Confidence 3556665531 112 233332 23 34445 899999877665 68899
Q ss_pred EEEecccCe------------eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 105 SLVGILPNR------------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 105 ~~~d~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.++|+.+.+ ...++.... ....++|+++|...++.-.|++|.+||+.+
T Consensus 302 sVid~~~~~~~~~~~l~~~~~v~~~v~vG~--gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 302 TVLDVTRFDAVFYENADPRSAVVAEPELGL--GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEGGGHHHHHHSCCCGGGGEEECCBCCS--CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEEECcccccccccccCcccceEEEcCCCC--CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 999998653 233443332 478899999994445566899999999987
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-07 Score=74.02 Aligned_cols=154 Identities=10% Similarity=0.054 Sum_probs=104.1
Q ss_pred eeecccCeEEEEeCCC-------------------cEEEEEcCCCceeeeecc--cc-------cceEEEEEEeCCC---
Q 029743 2 TFAADAMKLLGTSGDG-------------------TLSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNGR--- 50 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~-------------------~i~i~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~--- 50 (188)
+++|+.++++.+..++ .|..+|..+|+.+..++. |. .++.......+|+
T Consensus 241 ~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~ 320 (689)
T 1yiq_A 241 AYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRK 320 (689)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred eEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEE
Confidence 4677788888887765 399999999999887763 21 1222223334665
Q ss_pred EEEEecCCCeEEEEEeCCcccccceeeecc---------------------------C----------C-ceeEE-eecC
Q 029743 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLS---------------------------P----------N-SVDAL-LKLD 91 (188)
Q Consensus 51 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---------------------------~----------~-~v~~~-~~~~ 91 (188)
.++.++.+|.++++|..+ ++.+....... . . .-..+ ++|+
T Consensus 321 ~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~ 399 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD 399 (689)
T ss_dssp EEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred EEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC
Confidence 788999999999999876 34432111000 0 0 00113 5777
Q ss_pred CCEEEEecC---------------------------------------------CCeEEEEecccCeeeeecccCCCcce
Q 029743 92 EDRVITGSE---------------------------------------------NGLISLVGILPNRIIQPIAEHSEYPI 126 (188)
Q Consensus 92 ~~~l~~~~~---------------------------------------------d~~v~~~d~~~~~~~~~~~~~~~~~v 126 (188)
..++++... +|.|+.||+.+++.+.++..+. ++
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~ 477 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT--IF 477 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS--SC
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC--Cc
Confidence 676665421 3779999999999888876553 34
Q ss_pred eEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 127 ESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 127 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
....+...+..++.++.|+.|+.||.++++..
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 44466667888999999999999999988754
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-07 Score=74.29 Aligned_cols=154 Identities=10% Similarity=0.088 Sum_probs=106.9
Q ss_pred eeecccCeEEEEeCCC-------------------cEEEEEcCCCceeeeecc--cc-------cceEEEEEEeCC---C
Q 029743 2 TFAADAMKLLGTSGDG-------------------TLSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNG---R 50 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~-------------------~i~i~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~ 50 (188)
+++|++++++.+..++ .|..+|..+|+.+..++. |. .....+....+| .
T Consensus 249 ~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~ 328 (677)
T 1kb0_A 249 TFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRK 328 (677)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEE
T ss_pred eEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEee
Confidence 4677888888877653 499999999998877653 21 122333344577 6
Q ss_pred EEEEecCCCeEEEEEeCCcccccceeeeccC-----------Cce------------------------eEE-eecCCCE
Q 029743 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-----------NSV------------------------DAL-LKLDEDR 94 (188)
Q Consensus 51 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------~~v------------------------~~~-~~~~~~~ 94 (188)
.++.++.+|.++++|..+ ++.+..+.. .. .++ ..+ ++|++.+
T Consensus 329 ~l~~~~~~G~l~~lD~~t-G~~l~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~ 406 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTN-GKFISAKNF-VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (677)
T ss_dssp EEEECCTTSEEEEEETTT-CCEEEEEES-SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred EEEEECCCCEEEEEECCC-CCEeccccc-cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence 889999999999999876 444433321 10 000 123 5788787
Q ss_pred EEEecC-------------------------------------------CCeEEEEecccCeeeeecccCCCcceeEEEe
Q 029743 95 VITGSE-------------------------------------------NGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (188)
Q Consensus 95 l~~~~~-------------------------------------------d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 131 (188)
+++... .+.|..||+.+++.+.++... . ++....+
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~-~~~~g~~ 484 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-S-PWNGGTL 484 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-S-SCCCCEE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-C-CCcCcce
Confidence 776532 277999999999988877643 2 4555667
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 132 SHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
..++..++.++.|+.+++||+++++...
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceee
Confidence 7778888889999999999999887543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.3e-07 Score=73.00 Aligned_cols=144 Identities=10% Similarity=0.052 Sum_probs=100.3
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeecccc-----------cce------------------------EEEEEEeCCCEE
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-----------EEL------------------------TSVVLMKNGRKV 52 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-----------~~v------------------------~~~~~~~~~~~l 52 (188)
+.++.++.+|.++++|..+|+.+...+... .++ ..++++|+..++
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 678888999999999999998876554211 001 156788888887
Q ss_pred EEecC-------------------------------------------CCeEEEEEeCCcccccceeeeccCCceeEE-e
Q 029743 53 VCGSQ-------------------------------------------SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-L 88 (188)
Q Consensus 53 ~~~~~-------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~ 88 (188)
++... .+.|..||+.+ ++.+..+.. ..+.... +
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~--~~~~~~g~~ 484 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEH--VSPWNGGTL 484 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEE--SSSCCCCEE
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCC--CCCCcCcce
Confidence 76533 16799999976 455444442 2333333 5
Q ss_pred ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEE-eC----------------CCcEEEEe
Q 029743 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SH----------------DSMLKLWD 151 (188)
Q Consensus 89 ~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~----------------d~~i~iwd 151 (188)
...+.+++.++.++.+++||.++++.+..+....+....-+.|..+|+.++.. +. .+.+.+|.
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~ 564 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFV 564 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEe
Confidence 67788889999999999999999999988875543234456777888755433 22 36788888
Q ss_pred CCC
Q 029743 152 LDD 154 (188)
Q Consensus 152 ~~~ 154 (188)
+..
T Consensus 565 l~~ 567 (677)
T 1kb0_A 565 VGG 567 (677)
T ss_dssp ETC
T ss_pred ccc
Confidence 874
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.1e-07 Score=62.02 Aligned_cols=153 Identities=12% Similarity=0.009 Sum_probs=102.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEE-ecCCCeEEEEEeCCcccccceeeecc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
.|+ ++.+..+.+.++.|+++|+++++.+..+ -.......-..++++.|+. .-.++.+.+||..+ .+.+..+.. .
T Consensus 61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T-l~~~~ti~~-~ 135 (268)
T 3nok_A 61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMP-PQRERTTRY-S 135 (268)
T ss_dssp EEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTT-TEEEEEEEC-S
T ss_pred EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCc-CcEEEEEeC-C
Confidence 344 3455667777889999999999887776 2333433333445555544 44578999999976 466666664 3
Q ss_pred CCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCC-Cc---ceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EY---PIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~---~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
... .. ..++++.|+.+..++.|+++|..+.+.+..+.... +. .++.+.|. +|+..+..-.+..|.+.|.++++
T Consensus 136 ~eG-wG-Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 136 GEG-WG-LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp SCC-CC-EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred Cce-eE-EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence 221 22 34678888887788999999999988777664321 11 34667777 77655555467899999999887
Q ss_pred CCCCCC
Q 029743 157 KGSGNN 162 (188)
Q Consensus 157 ~~~~~~ 162 (188)
....+.
T Consensus 213 V~~~Id 218 (268)
T 3nok_A 213 VVGVID 218 (268)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 554433
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.5e-07 Score=62.27 Aligned_cols=148 Identities=9% Similarity=-0.048 Sum_probs=100.3
Q ss_pred cccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-ccCC
Q 029743 5 ADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPN 82 (188)
Q Consensus 5 ~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~ 82 (188)
++++.|+.+. .++.+.++|..+.+.+..++.... ....++++++.++++..++.|.++|..+. +....+.- ....
T Consensus 73 ~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~ 149 (266)
T 2iwa_A 73 LLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGH 149 (266)
T ss_dssp EETTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTE
T ss_pred EeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCc
Confidence 3455665554 478999999999988888763211 23446678888888777889999998763 44444432 0112
Q ss_pred c---eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccC------------CCcceeEEEeeCCCCEE-EEEeCCC
Q 029743 83 S---VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------SEYPIESLALSHDRKFL-GSISHDS 145 (188)
Q Consensus 83 ~---v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l-~~~~~d~ 145 (188)
+ +..+ +. +|...+....++.|.+.|..+++.+..+... .....+.++|+|+++.+ +++...+
T Consensus 150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 2 3445 45 6755555556889999999999987777532 01145899999998765 5555778
Q ss_pred cEEEEeCCCcc
Q 029743 146 MLKLWDLDDIL 156 (188)
Q Consensus 146 ~i~iwd~~~~~ 156 (188)
.|++.++....
T Consensus 229 ~v~~i~l~~~~ 239 (266)
T 2iwa_A 229 KLFEIKLHLVR 239 (266)
T ss_dssp EEEEEEEEECC
T ss_pred eEEEEEEeccc
Confidence 99998887653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.9e-06 Score=57.77 Aligned_cols=151 Identities=9% Similarity=-0.019 Sum_probs=94.2
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++++|+++.|+.+. ..+.|.+++...+.....+.........+++++++..|+ +-...+.|.+++++. .....+..
T Consensus 41 i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--~~~~~~~~ 118 (267)
T 1npe_A 41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRVLFD 118 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC--CCEEEEEE
Confidence 35777666666554 467899999876544333332234678999999765555 445567899999863 22333322
Q ss_pred ccCCceeEE-eecCCCEEEEecC---CCeEEEEecccCeeeeecc-cCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~---d~~v~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~ 152 (188)
........+ ++|++..|+.+.. .+.|..+++.... ...+. .... ....+++++++..|+.+. ..+.|.++++
T Consensus 119 ~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~-~P~gia~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLG-LPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCS-CEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCC-CCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence 022345666 7886665554443 4688888876432 22221 2212 578999999877665554 5688999998
Q ss_pred CCc
Q 029743 153 DDI 155 (188)
Q Consensus 153 ~~~ 155 (188)
...
T Consensus 197 ~g~ 199 (267)
T 1npe_A 197 AQP 199 (267)
T ss_dssp TEE
T ss_pred CCC
Confidence 754
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.78 E-value=6.3e-07 Score=68.62 Aligned_cols=146 Identities=11% Similarity=0.069 Sum_probs=102.1
Q ss_pred cccCeEEEEeC-CCcEEEEEcCCCceeeeecc-cccceEEEEE-E-eCCCEEEEec------------------CCCeEE
Q 029743 5 ADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEF-SEEELTSVVL-M-KNGRKVVCGS------------------QSGTVL 62 (188)
Q Consensus 5 ~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~------------------~d~~i~ 62 (188)
+||++++.... ++.|.+.|+.+.++.+.+.- .......+++ + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 38999888766 45799999999988774431 2345788887 5 8999998884 245788
Q ss_pred EEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCC--------------------------------------e
Q 029743 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG--------------------------------------L 103 (188)
Q Consensus 63 ~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~--------------------------------------~ 103 (188)
+.|..+ .+...++.- ... ...+ ++|+|+++++.+.+. .
T Consensus 179 vID~~t-~~v~~qI~V-gg~-pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 179 AVDADK-WEVAWQVLV-SGN-LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEETTT-TEEEEEEEE-SSC-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEECCC-CeEEEEEEe-CCC-ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 899876 344444442 233 3334 789999888877442 3
Q ss_pred EEEEeccc--Cee-eeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCCc
Q 029743 104 ISLVGILP--NRI-IQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (188)
Q Consensus 104 v~~~d~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (188)
|.+.|.++ ++. +..+.... ...++.++|||+++++++ .+.+|.++|+.+.
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred EEEEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 66777766 444 44454432 467899999999887665 6789999999975
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-06 Score=64.29 Aligned_cols=149 Identities=5% Similarity=0.044 Sum_probs=93.3
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-C----eEEEEEeCCccccc-
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-G----TVLLYSWGYFKDCS- 73 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~----~i~~~d~~~~~~~~- 73 (188)
|+++| ++..|+.+...+.|+.+|+..+....... .......++++++++.|+++... + .+..++.. +...
T Consensus 142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~--g~~~~ 218 (430)
T 3tc9_A 142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE--SGFKV 218 (430)
T ss_dssp EEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG--GTSCS
T ss_pred EEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC--Cceee
Confidence 46787 45667766665888899988766544333 44568899999999966666542 1 23334432 2222
Q ss_pred -ceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEE-eCCCcEEE
Q 029743 74 -DRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSMLKL 149 (188)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i 149 (188)
..+.. .. ....+ ++| +|.++++-..++.|+.++...+................++|+|++++|+.+ ...+.|..
T Consensus 219 ~~~l~~-~~-~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 219 ITELTK-GQ-NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp EEEEEE-CS-SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeecc-CC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 22322 22 23445 688 677666766788999999876654222221111246789999999965544 46788999
Q ss_pred EeCCC
Q 029743 150 WDLDD 154 (188)
Q Consensus 150 wd~~~ 154 (188)
++...
T Consensus 297 ~~~d~ 301 (430)
T 3tc9_A 297 SDYDW 301 (430)
T ss_dssp EEEET
T ss_pred EeCCc
Confidence 87653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.5e-07 Score=70.92 Aligned_cols=150 Identities=9% Similarity=0.029 Sum_probs=88.4
Q ss_pred eee-cccCeEEEEeC-CC----cEEEEEcCCC-ceee-eecccccceEEEEEEeCCCEEEEecCC-----CeEEEEEeCC
Q 029743 2 TFA-ADAMKLLGTSG-DG----TLSVCNLRKN-TVQT-RSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGY 68 (188)
Q Consensus 2 ~~s-~~~~~l~~~~~-d~----~i~i~~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~ 68 (188)
+|| |||++|+.+.. +| .|+++|+.++ +.+. .+. .....++|+||++.|+....+ ..|.++++.+
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC
Confidence 689 99999886643 22 4999999988 6321 121 124578899999888776654 2577777765
Q ss_pred cccc-cceeeeccCCceeEE-eecCCCEEEEec---CCCeEEEEecccCe-ee--eecccCCCcceeEEEeeCCCCEEEE
Q 029743 69 FKDC-SDRFVGLSPNSVDAL-LKLDEDRVITGS---ENGLISLVGILPNR-II--QPIAEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 69 ~~~~-~~~~~~~~~~~v~~~-~~~~~~~l~~~~---~d~~v~~~d~~~~~-~~--~~~~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
.... ...+..........+ ++|||++|+... ....|+++|+.++. .. ..+.........++.|+..+.+++.
T Consensus 257 ~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~ 336 (751)
T 2xe4_A 257 LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVIL 336 (751)
T ss_dssp CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEE
T ss_pred CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEE
Confidence 3211 122222022334455 799999887655 23468889987652 12 3333222225566666544444444
Q ss_pred EeCC----CcEEEEeCCC
Q 029743 141 ISHD----SMLKLWDLDD 154 (188)
Q Consensus 141 ~~~d----~~i~iwd~~~ 154 (188)
...+ ..|..+++.+
T Consensus 337 t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 337 TNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ECTTTCTTCEEEEEETTS
T ss_pred eCCCCCCCcEEEEEcCCC
Confidence 4433 3566677664
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.2e-07 Score=70.35 Aligned_cols=129 Identities=11% Similarity=0.041 Sum_probs=89.4
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccc-c--------------------------------------ceEEEEEEeCC
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE-E--------------------------------------ELTSVVLMKNG 49 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~--------------------------------------~v~~~~~~~~~ 49 (188)
.++.++.+|.++++|..+|+.+...+... . .-..++++|+.
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~ 400 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT 400 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence 67888899999999999998864322100 0 01126788887
Q ss_pred CEEEEecC---------------------------------------------CCeEEEEEeCCcccccceeeeccCCce
Q 029743 50 RKVVCGSQ---------------------------------------------SGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (188)
Q Consensus 50 ~~l~~~~~---------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~v 84 (188)
.++++... ++.|..||+.+ ++.+..+.. +....
T Consensus 401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~-~~~~~ 478 (689)
T 1yiq_A 401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPY-VTIFN 478 (689)
T ss_dssp TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEE-SSSCC
T ss_pred CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccC-CCCcc
Confidence 77776522 36799999987 455555543 33222
Q ss_pred eEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEE
Q 029743 85 DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 85 ~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
...+...+.+++.++.|+.|+.||.++|+.+.++....+....-+.|..+|+.++
T Consensus 479 ~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 479 GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 3346667889999999999999999999999888765442334577778887554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-05 Score=54.83 Aligned_cols=152 Identities=11% Similarity=0.051 Sum_probs=98.8
Q ss_pred eeecccCeEEEEeCC--CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEE-ecCCCeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
.|++ +.++.+.+.. +.|+++|+++++.+..+.-. .........+.++.|+. .-.++.+.+||..+ .+.+..+..
T Consensus 27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t-l~~~~ti~~ 103 (243)
T 3mbr_X 27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT-LTPRARFRY 103 (243)
T ss_dssp EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTT-TEEEEEEEC
T ss_pred EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC-CCcceeEEEEeCCEEEEEEeeCCEEEEEECCc-CcEEEEEeC
Confidence 4554 4455555554 48999999999988877632 23333333334555544 45678999999976 466666664
Q ss_pred ccCCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCC-C---cceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-E---YPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
... -..+ .++++.|+.+..++.|.++|..+.+.+..+.... + ..++.+.+. +|+..+..-.+..|.+.|.++
T Consensus 104 -~~~-Gwgl-t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t 179 (243)
T 3mbr_X 104 -PGE-GWAL-TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS 179 (243)
T ss_dssp -SSC-CCEE-EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT
T ss_pred -CCC-ceEE-eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC
Confidence 322 2333 4567777777778899999999988777664421 1 135566765 666555444678999999998
Q ss_pred ccCCCC
Q 029743 155 ILKGSG 160 (188)
Q Consensus 155 ~~~~~~ 160 (188)
+.....
T Consensus 180 G~V~~~ 185 (243)
T 3mbr_X 180 GKVVAW 185 (243)
T ss_dssp CBEEEE
T ss_pred CCEEEE
Confidence 875443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.2e-06 Score=59.74 Aligned_cols=149 Identities=9% Similarity=-0.049 Sum_probs=93.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-------------------ccccceEEEEEEe-CCCEEEEecCCCe
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-------------------FSEEELTSVVLMK-NGRKVVCGSQSGT 60 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-------------------~~~~~v~~~~~~~-~~~~l~~~~~d~~ 60 (188)
+++++++++++++..++.|..|+...+....... .....+..+++.+ +++ |+++...+.
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~ 102 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYH 102 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTE
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCC
Confidence 3677888878888888999999887654321110 0123578999997 554 555544455
Q ss_pred EEEEEeCCcccccceeeec----cCCceeEE-eec-CCCEEEEecC-----------------CCeEEEEecccCeeeee
Q 029743 61 VLLYSWGYFKDCSDRFVGL----SPNSVDAL-LKL-DEDRVITGSE-----------------NGLISLVGILPNRIIQP 117 (188)
Q Consensus 61 i~~~d~~~~~~~~~~~~~~----~~~~v~~~-~~~-~~~~l~~~~~-----------------d~~v~~~d~~~~~~~~~ 117 (188)
+..+|... ..+..+... .......+ +.+ +|++.++-.. .+.|..+|..+++....
T Consensus 103 i~~~d~~~--g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 103 LSVVGSEG--GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp EEEECTTC--EECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred EEEEeCCC--CEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 77777653 222222210 11234556 688 8887666432 36788888776654332
Q ss_pred cccCCCcceeEEEeeCCCCEEEEE-eCCCcEEEEeCCC
Q 029743 118 IAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWDLDD 154 (188)
Q Consensus 118 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 154 (188)
.... . ....++++++++.|+.+ ...+.|.+|++..
T Consensus 181 ~~~~-~-~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 181 LKEL-H-VPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEE-S-CCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred ccCC-c-cCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 2222 2 35679999999866555 4568999999875
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.62 E-value=6.7e-06 Score=59.87 Aligned_cols=145 Identities=8% Similarity=-0.018 Sum_probs=94.4
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeeccc---------ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS---------EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
.+..+++++.++.|+.+|.++++.+...... ...+.+ ....++..+++++.++.|..+|..+ ++.+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~t-G~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSD-GTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTT-CCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCC-CCEEEEE
Confidence 4667888888899999999999887665532 122222 2223466788888899999999876 4444444
Q ss_pred eeccCCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcce-----eEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.. .. .+.+.....+..+++++.++.|..+|.++++.+..+..... .. ...... +..++.+..++.|..+|
T Consensus 130 ~~-~~-~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KV-AG-EALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMP-SLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp EC-SS-CCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC------CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eC-CC-ceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC-ceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 33 22 22211111245788888899999999999988776654321 11 222232 34677788889999999
Q ss_pred CCCccC
Q 029743 152 LDDILK 157 (188)
Q Consensus 152 ~~~~~~ 157 (188)
..++..
T Consensus 205 ~~tG~~ 210 (376)
T 3q7m_A 205 MEQGQM 210 (376)
T ss_dssp TTTCCE
T ss_pred CCCCcE
Confidence 987654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=3.6e-05 Score=53.36 Aligned_cols=151 Identities=5% Similarity=-0.112 Sum_probs=91.2
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC---CCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~ 76 (188)
++++|+++.|+.+. ..+.|.++++..................++++|++..|+.+.. .+.|..++++. .....+
T Consensus 84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg--~~~~~~ 161 (267)
T 1npe_A 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TNRRIL 161 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CCCEEE
T ss_pred EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC--CCcEEE
Confidence 45777666665554 4578888887654322222222245789999997666655543 36788888753 333333
Q ss_pred eeccCCceeEE-eecCCCEEEE-ecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCC
Q 029743 77 VGLSPNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~-~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (188)
..........+ +++++..|+. -...+.|.++++........+... . ....++.. +..|+.+. ..+.|.++|..
T Consensus 162 ~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence 21023345666 6887766554 456789999998755433333322 2 34567664 44555444 56899999998
Q ss_pred CccC
Q 029743 154 DILK 157 (188)
Q Consensus 154 ~~~~ 157 (188)
++..
T Consensus 238 ~g~~ 241 (267)
T 1npe_A 238 ISKE 241 (267)
T ss_dssp TTEE
T ss_pred CCCc
Confidence 7653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.53 E-value=9.2e-06 Score=56.11 Aligned_cols=136 Identities=10% Similarity=0.041 Sum_probs=90.0
Q ss_pred ecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-ccC
Q 029743 4 AADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSP 81 (188)
Q Consensus 4 s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~ 81 (188)
.++++.|.... .++.+.++|.++.+.+.+++... ....++++++.|+.+..++.|.++|..+. +.+..+.- ...
T Consensus 93 t~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g 168 (262)
T 3nol_A 93 SDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHG 168 (262)
T ss_dssp EEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTC-SEEEEEECEETT
T ss_pred EEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCC
Confidence 34555665554 47899999999999988887422 22344467888888777788999998763 44444432 012
Q ss_pred Cce---eEEeecCCCEEEEecCCCeEEEEecccCeeeeecccC-----------CCcceeEEEeeCCCCEEEEEeC
Q 029743 82 NSV---DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH-----------SEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 82 ~~v---~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
.++ ..+-..+|+..+..-.++.|.+.|.++++.+..+... ...-.+.|+|+|+++.|...+.
T Consensus 169 ~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 169 EELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 232 2341236765555557889999999999987666432 1124589999998887766663
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1e-05 Score=58.93 Aligned_cols=136 Identities=12% Similarity=0.127 Sum_probs=90.4
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
+..++.++.++.+..+|..+++.+..... .....+.. ++..++.++.++.+..+|..++ +.+.............
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~ 313 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLTS 313 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCCC
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCcccC
Confidence 45677778889999999999988766542 22334333 4677888888999999998763 4433332101111111
Q ss_pred EeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCccee-EEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-SLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 87 ~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
. ...+..+++++.+|.|..+|.++++.+..+..... .+. .... .+..|+.++.+|.|+.|+
T Consensus 314 ~-~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~-~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 314 P-VLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS-GFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp C-EEETTEEEEECTTSEEEEEETTTCCEEEEEECCTT-CBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred C-EEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-cceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 1 12356888899999999999999998877655322 232 2222 245677888899999987
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=8.1e-06 Score=64.21 Aligned_cols=153 Identities=8% Similarity=0.056 Sum_probs=100.1
Q ss_pred eeecccCeEEEEeCCC-------------------cEEEEEcCCCceeeeecc--cc-------cceEEEEEEeCCC---
Q 029743 2 TFAADAMKLLGTSGDG-------------------TLSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNGR--- 50 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~-------------------~i~i~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~--- 50 (188)
+++|+..+++.+..++ .|..+|..+|+.+..++. |. .+.....+..+|+
T Consensus 236 a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~ 315 (668)
T 1kv9_A 236 AYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRK 315 (668)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEE
Confidence 4567777888887665 389999999998877763 21 2333333444675
Q ss_pred EEEEecCCCeEEEEEeCCcccccceeeeccC------------Cce------------------------eEE-eecCCC
Q 029743 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP------------NSV------------------------DAL-LKLDED 93 (188)
Q Consensus 51 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~------------~~v------------------------~~~-~~~~~~ 93 (188)
.++.++.+|.++++|..+ ++.+..... .. .++ ..+ ++|+..
T Consensus 316 ~v~~~~~~G~l~~lD~~t-G~~l~~~~~-~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTN-GKLISAEKF-GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEECCTTSEEEEEETTT-CCEEEEEES-SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEECCCCEEEEEECCC-CCEeccccc-cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 688999999999999876 344321110 00 000 012 456555
Q ss_pred EEEEe------------------------------------cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE
Q 029743 94 RVITG------------------------------------SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 94 ~l~~~------------------------------------~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 137 (188)
+++.. ..+|.|..||+.+++.+....... +.....+...+..
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~ 471 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNL 471 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTE
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCE
Confidence 54431 123789999999999887765542 3444455557788
Q ss_pred EEEEeCCCcEEEEeCCCccCC
Q 029743 138 LGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~ 158 (188)
++.++.|+.|++||.++++..
T Consensus 472 vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 472 VFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEE
T ss_pred EEEECCcccchhhhhhcChhh
Confidence 888999999999999987643
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-06 Score=63.43 Aligned_cols=125 Identities=11% Similarity=-0.146 Sum_probs=86.4
Q ss_pred cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec----------CCCeEEEEEeCCcccccceeeecc-------
Q 029743 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGYFKDCSDRFVGLS------- 80 (188)
Q Consensus 18 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~~~------- 80 (188)
.|.++|..+++.+..++....+ .+.++|+++.++++. .++.|.+||+.+ .+.+..+.- .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v-~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIEL-PDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEE-TTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEEC-CCcccccc
Confidence 7889999999999988854455 799999999998886 367899999987 455666643 3
Q ss_pred CCceeEE-eecCCCEEEEecC--CCeEEE--EecccCeeeeecccCCCcceeEEEeeCCCC-EEEEEeCCCcEEEEeCCC
Q 029743 81 PNSVDAL-LKLDEDRVITGSE--NGLISL--VGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~--d~~v~~--~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 154 (188)
......+ ++|||++++++.. ...|.+ +|+.+ +..+... + . +.+.|+++ .+++.+.|+.+.+.++.+
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~--~--~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S--C--FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S--C--CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C--c--eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 1223455 8999999998864 467888 99877 3444322 1 1 12334443 334455677777777765
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-05 Score=53.60 Aligned_cols=133 Identities=9% Similarity=0.018 Sum_probs=87.1
Q ss_pred ccCeEEEE-eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-ccCCc
Q 029743 6 DAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNS 83 (188)
Q Consensus 6 ~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~ 83 (188)
.++.|+.. ..++.+.++|.++.+.+.+++... .=..+ .++++.|+.+..++.|.++|..+. +.+..+.- .+..+
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRP 148 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEE
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcc
Confidence 34455444 457899999999999988887432 22344 467888887777889999998763 44444432 02222
Q ss_pred ee---EEeecCCCEEEEecCCCeEEEEecccCeeeeecccC------------CCcceeEEEeeCCCCEEEEEe
Q 029743 84 VD---ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------SEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 84 v~---~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+. .+-..+|+.++..-.+..|.+.|.++++.+..+... ...-.+.|+++|+++.|...+
T Consensus 149 ~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 149 LDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 22 331236665555556789999999999877665311 122468999999877776555
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.4e-06 Score=59.46 Aligned_cols=136 Identities=18% Similarity=0.090 Sum_probs=90.6
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeE
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 86 (188)
+..+..++.++.|..+|.. ++...........+.++...+++. ++.++.++.+..+|.. +.....+.. ....+.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~-~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFKT-NDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT--SCEEEEEEC-SSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEec-CCCceee
Confidence 4467777888999999988 776666554455566666666666 5567777889999876 344444443 4444555
Q ss_pred E-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
+ ..+++.+++ ++ +.|..+| .+++.+..+..... .+.++...+++.. ..++.++.|..++..
T Consensus 182 ~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~-~~~~~~~~~~g~l-~v~t~~~gl~~~~~~ 243 (330)
T 3hxj_A 182 ASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYW-TVTRPAISEDGTI-YVTSLDGHLYAINPD 243 (330)
T ss_dssp CEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSC-CCSCCEECTTSCE-EEEETTTEEEEECTT
T ss_pred eEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCc-ceeceEECCCCeE-EEEcCCCeEEEECCC
Confidence 5 356776554 44 7788999 67776666554433 5788888887754 456667778888753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.3e-05 Score=54.25 Aligned_cols=135 Identities=12% Similarity=0.003 Sum_probs=88.5
Q ss_pred ecccCeEEEE-eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-ccC
Q 029743 4 AADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSP 81 (188)
Q Consensus 4 s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~ 81 (188)
.++++.|+.. ..++.+.+||.++.+.+.+++.. ..-..++ ++++.|+.+..++.|.++|..+. +.+..+.- .+.
T Consensus 102 t~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g 177 (268)
T 3nok_A 102 ASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRG 177 (268)
T ss_dssp EECSSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTC-CEEEEEECEETT
T ss_pred EEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCC
Confidence 3445555554 45789999999999999888743 2223444 57888888877889999998763 44444432 022
Q ss_pred Cce---eEEeecCCCEEEEecCCCeEEEEecccCeeeeecccC------------CCcceeEEEeeCCCCEEEEEe
Q 029743 82 NSV---DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------SEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 82 ~~v---~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~ 142 (188)
.++ ..+-..+|+.++.....+.|.+.|.++++.+..+... ...-.+.|+++|+++.|...+
T Consensus 178 ~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 178 QPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 222 3332237765555557889999999999877665321 112468999999876665554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=9e-05 Score=51.22 Aligned_cols=153 Identities=8% Similarity=0.054 Sum_probs=96.2
Q ss_pred CeeecccCeEE-EEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc--cccee
Q 029743 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~ 76 (188)
|+|+|+++.|+ +...++.|...|.. ++.++.++ .-......+++.+++.++++.-.++.+.++++...+. .+...
T Consensus 32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~ 110 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKI 110 (255)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeee
Confidence 47888766655 46677889999988 77777664 2225678999998888777766778899999865432 11111
Q ss_pred e------eccCCceeEE-eecCCCEEEEecCCCeEEEEeccc---Ceeeeec-----c-cCCCcceeEEEeeCCCCEE-E
Q 029743 77 V------GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQPI-----A-EHSEYPIESLALSHDRKFL-G 139 (188)
Q Consensus 77 ~------~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~---~~~~~~~-----~-~~~~~~v~~~~~~~~~~~l-~ 139 (188)
. . .......+ ++|.++.|+++.......+|.++. ...+..+ . ...-..+.+++++|....| +
T Consensus 111 ~~~~~~~~-~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lli 189 (255)
T 3qqz_A 111 KIPLQESP-TNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLV 189 (255)
T ss_dssp ECCCSSCC-CSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEE
T ss_pred cccccccc-ccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEE
Confidence 1 1 22335677 799888888777665555665541 1111111 0 0011257899999965544 5
Q ss_pred EEeCCCcEEEEeCCCc
Q 029743 140 SISHDSMLKLWDLDDI 155 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (188)
.......|.++|....
T Consensus 190 LS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 190 LSHESRALQEVTLVGE 205 (255)
T ss_dssp EETTTTEEEEECTTCC
T ss_pred EECCCCeEEEEcCCCC
Confidence 5556677888887654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.1e-06 Score=58.05 Aligned_cols=141 Identities=11% Similarity=-0.014 Sum_probs=87.8
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
.++++ +..++ +.|..+| .+++...........+.++...+++. |..++.++.+..++.. +..+..+.. ....
T Consensus 185 d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~--g~~~~~~~~-~~~~ 256 (330)
T 3hxj_A 185 GKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD--GTEKWRFKT-GKRI 256 (330)
T ss_dssp CTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT--SCEEEEEEC-SSCC
T ss_pred cCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC--CCEeEEeeC-CCCc
Confidence 34554 44444 7888999 67766666554556677888877765 4556667778777642 344444443 3333
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+..+ ..+++ .+..++.++.|..+|. +++.+..+..... .+.++...+++. |..++.+|.+++...+...
T Consensus 257 ~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~-~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 257 ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSW-IIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSC-CCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCc-cccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 3333 33344 5677788888999996 6776665554433 577777777775 5567889999988776543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.2e-05 Score=55.15 Aligned_cols=135 Identities=13% Similarity=0.031 Sum_probs=80.7
Q ss_pred CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeCCcc-cccceeeeccCCceeEE-eecCCC
Q 029743 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFK-DCSDRFVGLSPNSVDAL-LKLDED 93 (188)
Q Consensus 17 ~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~ 93 (188)
+.|..++..+++...... .......++++|+++.|+.+ ...+.|..|++.... .....+.. ... ...+ +.++|+
T Consensus 165 g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGH 241 (322)
T ss_dssp EEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSC
T ss_pred ceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCC
Confidence 567778876665432222 12345689999999866655 556899999986321 11122222 223 5566 688998
Q ss_pred EEEEecC----------CCeEEEEecccCeeeeecccCCC---cceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 94 RVITGSE----------NGLISLVGILPNRIIQPIAEHSE---YPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 94 ~l~~~~~----------d~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
++++... .+.|..+|.. ++.+..+....+ ..+..+++. +++.+++....+.|.++++....
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC----
T ss_pred EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccccc
Confidence 7666544 4668888864 666665543321 146667663 56555665578899999987543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=6.8e-05 Score=55.95 Aligned_cols=147 Identities=10% Similarity=0.088 Sum_probs=86.9
Q ss_pred Ceeecc--cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCC-----eEEEEEeCCccccc
Q 029743 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (188)
Q Consensus 1 l~~s~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~ 73 (188)
|+++|+ ...|+.+...+.|+.++..++....... .......++++++++ |+.+...+ .+...+.. ....
T Consensus 144 vavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~--~~~~ 219 (433)
T 4hw6_A 144 MMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA--SGFT 219 (433)
T ss_dssp EEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG--GTTC
T ss_pred EEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC--CCee
Confidence 467774 4455555544889999988776654433 445689999999999 44444321 13233221 1111
Q ss_pred --ceeeeccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeec-ccCCCcceeEEEeeCCCCEEEEE-eCCCcE
Q 029743 74 --DRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSI-SHDSML 147 (188)
Q Consensus 74 --~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i 147 (188)
..+.. . .....+ ++| +|.++++-..++.|+.++..++.....+ ..........++|+|++++|+.+ ...+.|
T Consensus 220 ~~~~~~~-~-~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 220 ERLSLCN-A-RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CEEEEEE-C-SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ccccccc-c-CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 11221 2 223334 678 6666666667888999998866652222 11111123569999999966544 456889
Q ss_pred EEEeCC
Q 029743 148 KLWDLD 153 (188)
Q Consensus 148 ~iwd~~ 153 (188)
+.++..
T Consensus 298 ~~~~~d 303 (433)
T 4hw6_A 298 YRVDYN 303 (433)
T ss_dssp EEEEBC
T ss_pred EEEeCC
Confidence 998865
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00028 Score=51.12 Aligned_cols=152 Identities=12% Similarity=-0.008 Sum_probs=91.2
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCE-EEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|++..+.|+... ..+.|+.+++........+.........+++.+.+.. .++-...+.|.+.+++. .....+..
T Consensus 78 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~ 155 (349)
T 3v64_C 78 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW 155 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC--CceEEEEe
Confidence 35666555555544 4577888887765433333322345678999875544 45555667899999863 33333322
Q ss_pred ccCCceeEE-eecCCCEEE-EecCC-CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCC
Q 029743 79 LSPNSVDAL-LKLDEDRVI-TGSEN-GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~-~~~~d-~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (188)
..-.....+ +.|.+..|+ +-... +.|..+++........+...-. ....|+++|++..|..+. ..+.|..+++..
T Consensus 156 ~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~-~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 156 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF-WPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCC-CcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 033456677 688655554 44444 7888888764332222222222 578999998777666554 567899999875
Q ss_pred c
Q 029743 155 I 155 (188)
Q Consensus 155 ~ 155 (188)
.
T Consensus 235 ~ 235 (349)
T 3v64_C 235 S 235 (349)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00013 Score=55.14 Aligned_cols=152 Identities=7% Similarity=0.063 Sum_probs=90.4
Q ss_pred Ceeec-ccCeEEEEeC-CCcEEEEEcCCCceeeeecc---cccceEEEEE-------EeCCCEEEEecCCC-------eE
Q 029743 1 MTFAA-DAMKLLGTSG-DGTLSVCNLRKNTVQTRSEF---SEEELTSVVL-------MKNGRKVVCGSQSG-------TV 61 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~~~~~d~-------~i 61 (188)
|+|+| +...|+.+.. .+.|++.|++.+........ .......++| +++++.|+++...+ .|
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V 223 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSV 223 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEE
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceE
Confidence 46888 4555555544 46788899888766544432 1235899999 99999777665553 25
Q ss_pred EEEEeCCccccc-----ceeeeccCCceeEEeecC-CCEEEEecCCCeEEEEecc-------cCee-----------eee
Q 029743 62 LLYSWGYFKDCS-----DRFVGLSPNSVDALLKLD-EDRVITGSENGLISLVGIL-------PNRI-----------IQP 117 (188)
Q Consensus 62 ~~~d~~~~~~~~-----~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~v~~~d~~-------~~~~-----------~~~ 117 (188)
.+++....+... +.+.. ...+.....+|+ +.++++-..++.|..+|+. ++.. ...
T Consensus 224 ~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~ 302 (496)
T 3kya_A 224 YIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQ 302 (496)
T ss_dssp EEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEE
T ss_pred EEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccce
Confidence 555533212221 22322 233332236884 5555566678889999997 4443 111
Q ss_pred -cccCCCcceeEEEeeCCCCEEEEE-eCCCcEEEEeCC
Q 029743 118 -IAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWDLD 153 (188)
Q Consensus 118 -~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~ 153 (188)
+........+.++|+|++++|+.+ .....|+.++..
T Consensus 303 l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 303 LFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred eEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 111112246789999999965544 456788886643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-05 Score=61.16 Aligned_cols=129 Identities=10% Similarity=-0.017 Sum_probs=82.8
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccc-------------cce--------------------------EEEEEEeCC
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE-------------EEL--------------------------TSVVLMKNG 49 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~~ 49 (188)
.++.++.+|.++++|..+|+.+...+... .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 56778889999999999998876554211 111 235778877
Q ss_pred CEEEEec-------------------------------------CCCeEEEEEeCCcccccceeeeccCCceeEE-eecC
Q 029743 50 RKVVCGS-------------------------------------QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLD 91 (188)
Q Consensus 50 ~~l~~~~-------------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~ 91 (188)
..+++.. .++.+..||+.+ ++.+..+.. ...+... ....
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t-G~~~W~~~~--~~~~~~~~~~t~ 474 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT-GKAKWTKWE--KFAAWGGTLYTK 474 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT-CCEEEEEEE--SSCCCSBCEEET
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC-CCEEEEecC--CCCccceeEEEC
Confidence 7766643 246788888875 344444432 2222222 3445
Q ss_pred CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEE
Q 029743 92 EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (188)
Q Consensus 92 ~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 140 (188)
+.++++++.++.|+.+|.++++.+..+..........+.+..+++.++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 6778889999999999999999988876543211223445567765543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00029 Score=50.76 Aligned_cols=144 Identities=13% Similarity=0.157 Sum_probs=94.4
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeC----CC---EEEEecC---CCeEEEEEeCCcccccc
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN----GR---KVVCGSQ---SGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---d~~i~~~d~~~~~~~~~ 74 (188)
|...+++.....+-+.+||+ .|+.++.+.. +.++.+...|. |+ ++++... +++|.+|+++.....+.
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 34455666677789999999 7888777753 56777777663 22 2333333 47899998853223333
Q ss_pred eeee------ccCCceeEE--e-ecC-CC-EEEEecCCCeEEEEecc-------cCeeeeecccCCCcceeEEEeeCCCC
Q 029743 75 RFVG------LSPNSVDAL--L-KLD-ED-RVITGSENGLISLVGIL-------PNRIIQPIAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 75 ~~~~------~~~~~v~~~--~-~~~-~~-~l~~~~~d~~v~~~d~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~ 136 (188)
.+.. ..-..+..+ + +|. ++ ++++...+|.+..|++. +.+.++++... . .+..+...+...
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-s-q~EgcvvDd~~g 192 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-S-QTEGMAADDEYG 192 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-S-CEEEEEEETTTT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-C-CcceEEEcCCCC
Confidence 3311 010233333 3 564 44 67788888999999983 34567777665 3 688999999888
Q ss_pred EEEEEeCCCcEEEEeCC
Q 029743 137 FLGSISHDSMLKLWDLD 153 (188)
Q Consensus 137 ~l~~~~~d~~i~iwd~~ 153 (188)
+|+.+-++..|..++.+
T Consensus 193 ~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEEETTTEEEEEECS
T ss_pred eEEEecccceEEEEeCC
Confidence 99999888777667754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=8e-05 Score=57.54 Aligned_cols=137 Identities=13% Similarity=0.018 Sum_probs=86.0
Q ss_pred cEEEEEcCCCceeeeecc--cc-------cceEEEEEEeCCC---EEEEecCCCeEEEEEeCCcccccceeeeccC----
Q 029743 18 TLSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNGR---KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP---- 81 (188)
Q Consensus 18 ~i~i~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---- 81 (188)
.|..+|..+|+.+..++. |. ....-+...++|+ .++.++.+|.+.++|..+ ++.+....- ..
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~w~~~~-~~~~~w 350 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNREN-GNLIVAEKV-DPAVNV 350 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTT-CCEEEEEES-STTCCS
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCC-CCEEeeecc-cCCccc
Confidence 589999999998877652 11 1111122234674 577888899999999876 344333221 10
Q ss_pred ---------Cce--------------------------eEE-eecCCCEEEEec--------------------------
Q 029743 82 ---------NSV--------------------------DAL-LKLDEDRVITGS-------------------------- 99 (188)
Q Consensus 82 ---------~~v--------------------------~~~-~~~~~~~l~~~~-------------------------- 99 (188)
.++ ..+ ++|+..++++..
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 011 112 466666665542
Q ss_pred -----------CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 100 -----------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 100 -----------~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.++.|..||+.+++.+.++.... .+....+...+..++.++.|+.|+.+|.++++..
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 34789999999999877765432 3333333434667777889999999999987654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00038 Score=49.63 Aligned_cols=149 Identities=9% Similarity=-0.020 Sum_probs=88.9
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCC----CceeeeecccccceEEEEEEeCCCEE-EEecCCCeEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~ 74 (188)
++|++.++.|+.+. ..+.|+.+++.. ......+...-.....+++.+.+..| ++-...+.|.+++++. ....
T Consensus 35 ~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g--~~~~ 112 (316)
T 1ijq_A 35 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 112 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEE
T ss_pred EEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC--CceE
Confidence 35777666665554 457888888775 22222222222456789998755544 4556678999999863 3333
Q ss_pred ee-eeccCCceeEE-eecCCCEEEEec-CC-CeEEEEecccCeeeeec-ccCCCcceeEEEeeCCCCEEEEEe-CCCcEE
Q 029743 75 RF-VGLSPNSVDAL-LKLDEDRVITGS-EN-GLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSIS-HDSMLK 148 (188)
Q Consensus 75 ~~-~~~~~~~v~~~-~~~~~~~l~~~~-~d-~~v~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~ 148 (188)
.+ .. .......+ +.|.+..++... .. +.|..+++.. .....+ ...-. ....+++++++..|+.+. ..+.|.
T Consensus 113 ~~~~~-~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~-~P~gla~d~~~~~lY~~D~~~~~I~ 189 (316)
T 1ijq_A 113 TLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSIS 189 (316)
T ss_dssp EEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEC-CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCC-CceEEEEeccCCEEEEEECCCCeEE
Confidence 33 22 33456677 688666554444 33 6888888753 333332 22212 578999999877776554 557899
Q ss_pred EEeCCC
Q 029743 149 LWDLDD 154 (188)
Q Consensus 149 iwd~~~ 154 (188)
.+|+..
T Consensus 190 ~~d~dg 195 (316)
T 1ijq_A 190 SIDVNG 195 (316)
T ss_dssp EEETTS
T ss_pred EEecCC
Confidence 999875
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.28 E-value=9.5e-05 Score=58.98 Aligned_cols=149 Identities=10% Similarity=0.020 Sum_probs=81.1
Q ss_pred CeeecccCeEEEEeCC-----CcEEEEEcCCCce--eeeec-ccccceEEEEEEeCCCEEEEecC---CCeEEEEEeCCc
Q 029743 1 MTFAADAMKLLGTSGD-----GTLSVCNLRKNTV--QTRSE-FSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYF 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d-----~~i~i~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~ 69 (188)
++|+|||+.|+....+ ..|+++++.++.. ...+. ........+.|+|||++|+.... ...|.++|+...
T Consensus 226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 4799999988877664 2577888876542 12222 22234678899999998876553 346888888653
Q ss_pred cccc--ceeeeccCCceeEE-eecCCCEEEEec-CC----CeEEEEecccCeeeee--cccCCCcceeEEEeeCCCCEE-
Q 029743 70 KDCS--DRFVGLSPNSVDAL-LKLDEDRVITGS-EN----GLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFL- 138 (188)
Q Consensus 70 ~~~~--~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d----~~v~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l- 138 (188)
.... ..+..........+ ++ .|..|+..+ .+ ..|..+++.++..... +....+..+..+.+. +..|
T Consensus 306 ~~~~~~~~l~~~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv 382 (751)
T 2xe4_A 306 NAHNTLEIVRPREKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLV 382 (751)
T ss_dssp TTCCCEEESSCCCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEE
T ss_pred CCCceeEEeecCCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEE
Confidence 2122 33332023333433 23 366554443 32 3577777764222222 222222234555554 4444
Q ss_pred EEEeCCCc--EEEEeC
Q 029743 139 GSISHDSM--LKLWDL 152 (188)
Q Consensus 139 ~~~~~d~~--i~iwd~ 152 (188)
++...++. |.++++
T Consensus 383 ~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 383 VAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EEEEeCCEEEEEEEec
Confidence 55556664 555665
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=4.5e-05 Score=59.05 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=51.0
Q ss_pred CCeEEEEEeCCcccccceeeeccCCceeE-EeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC
Q 029743 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVDA-LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 58 d~~i~~~d~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 136 (188)
++.|..||+.+ ++.+-.... . .+... .....+.+++.++.|+.++.||.++|+.+.++....+....-+.+..+|+
T Consensus 465 ~G~l~A~D~~t-G~~~W~~~~-~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 465 VGSLRAMDPVS-GKVVWEHKE-H-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTT-CCEEEEEEE-S-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cceEEEEECCC-CCEEEEecC-C-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 46788888876 344433332 2 12221 12335678888999999999999999999888765432223366767887
Q ss_pred EEE
Q 029743 137 FLG 139 (188)
Q Consensus 137 ~l~ 139 (188)
..+
T Consensus 542 qYv 544 (582)
T 1flg_A 542 QYL 544 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00023 Score=50.85 Aligned_cols=151 Identities=9% Similarity=0.041 Sum_probs=95.6
Q ss_pred eeecccCeEEEEe-CCCcEEEEEcCCCceee-eeccc------ccceEEEEE---EeCCCEEEEec-------------C
Q 029743 2 TFAADAMKLLGTS-GDGTLSVCNLRKNTVQT-RSEFS------EEELTSVVL---MKNGRKVVCGS-------------Q 57 (188)
Q Consensus 2 ~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~-~~~~~------~~~v~~~~~---~~~~~~l~~~~-------------~ 57 (188)
+|.+....+..++ ..++|..|+...+.... .+..- ...+..+.| .|+++++++.. .
T Consensus 19 ~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g 98 (334)
T 2p9w_A 19 IYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG 98 (334)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred cCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence 5666445555555 68999999987654332 23221 114689999 58877777543 2
Q ss_pred CCeEEEEEeC---Ccccccceee--ecc---------C-CceeEE-eecCCCEEEEecCC-CeEEEEecccCeeeeecc-
Q 029743 58 SGTVLLYSWG---YFKDCSDRFV--GLS---------P-NSVDAL-LKLDEDRVITGSEN-GLISLVGILPNRIIQPIA- 119 (188)
Q Consensus 58 d~~i~~~d~~---~~~~~~~~~~--~~~---------~-~~v~~~-~~~~~~~l~~~~~d-~~v~~~d~~~~~~~~~~~- 119 (188)
+..+..||+. +. +.+.... ... . .....+ ..++|+..++++.. +.|...+.... .+..+.
T Consensus 99 ~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~ 176 (334)
T 2p9w_A 99 ASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAW 176 (334)
T ss_dssp CCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEE
T ss_pred CCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeee
Confidence 5779999987 43 3332222 100 1 124445 58899988888877 88877776533 222211
Q ss_pred ----cCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 120 ----EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 120 ----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.......+.|+++|++..|++....+.|..+|+.+
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 11111367899999999988887799999999884
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00037 Score=49.35 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=84.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCC--eEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+|+++++++-...+.|+.++.... ....+. ....+..+++.++++++++..... .|..++... +.. ..+..
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~-~~~~~ 112 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTV-ETLLT 112 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCE-EEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeE-EEEEe
Confidence 467888886666557789999987654 333332 235688999999998665543322 466666543 232 22222
Q ss_pred c-cCCceeEE-eecCCCEEEEecCCCeEEEEecccCee-ee---------ecccCCCcceeEEEeeCCCCEEEEE-eCCC
Q 029743 79 L-SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI-IQ---------PIAEHSEYPIESLALSHDRKFLGSI-SHDS 145 (188)
Q Consensus 79 ~-~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~-~~---------~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~ 145 (188)
. .......+ ..+.+..+++-..++.|+.+|..++.. +. .....-. ....+ +++++.|+.+ ...+
T Consensus 113 ~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~-~pngi--s~dg~~lyv~d~~~~ 189 (306)
T 2p4o_A 113 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP-AANGL--KRFGNFLYVSNTEKM 189 (306)
T ss_dssp CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC-SEEEE--EEETTEEEEEETTTT
T ss_pred CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC-cCCCc--CcCCCEEEEEeCCCC
Confidence 0 11122233 234444455555688899999765421 11 0001111 34555 7888766554 4568
Q ss_pred cEEEEeCCC
Q 029743 146 MLKLWDLDD 154 (188)
Q Consensus 146 ~i~iwd~~~ 154 (188)
.|..|++..
T Consensus 190 ~I~~~~~~~ 198 (306)
T 2p4o_A 190 LLLRIPVDS 198 (306)
T ss_dssp EEEEEEBCT
T ss_pred EEEEEEeCC
Confidence 999999874
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00044 Score=47.80 Aligned_cols=149 Identities=9% Similarity=0.100 Sum_probs=89.6
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCce---eeeec------ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC--cc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRSE------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FK 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~~ 70 (188)
++.+++.++++.-.++.+.++++..... +.... ........++|+|.++.|+++.......+|.++. ..
T Consensus 76 a~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~ 155 (255)
T 3qqz_A 76 EYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS 155 (255)
T ss_dssp EECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS
T ss_pred EEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC
Confidence 5566777666655667888888765332 12221 1234568999999998888777766666666641 11
Q ss_pred cccceeee------ccCCceeEE-eec-CCCEEEEecCCCeEEEEecccCeeeeecccCCC--------cceeEEEeeCC
Q 029743 71 DCSDRFVG------LSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSE--------YPIESLALSHD 134 (188)
Q Consensus 71 ~~~~~~~~------~~~~~v~~~-~~~-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~--------~~v~~~~~~~~ 134 (188)
..+..+.. .....+..+ ++| .+.+++.....+.|..+|.+ ++.+..+.-..+ .+...|+|.++
T Consensus 156 ~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~ 234 (255)
T 3qqz_A 156 NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS 234 (255)
T ss_dssp SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC
Confidence 11222210 012245667 677 45566677778889999975 444433321111 15689999999
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 029743 135 RKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~ 152 (188)
|+..+ .++-+.++.|.-
T Consensus 235 G~lyI-vsE~n~~y~f~~ 251 (255)
T 3qqz_A 235 GNIYI-VSEPNRFYRFTP 251 (255)
T ss_dssp CCEEE-EETTTEEEEEEC
T ss_pred CCEEE-EcCCceEEEEEe
Confidence 97554 466777777653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00016 Score=56.12 Aligned_cols=78 Identities=13% Similarity=0.018 Sum_probs=48.4
Q ss_pred CCeEEEEEeCCcccccceeeeccCCcee-EEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC
Q 029743 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVD-ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 58 d~~i~~~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 136 (188)
.+.+.-||+.+ ++.+-.... ..+.. ......+.+++.++.|+.++.||.++|+.+.+++........-+.+..+|+
T Consensus 452 ~G~l~A~D~~t-G~~~W~~~~--~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 452 LGQIKAYNAIT-GDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp CEEEEEECTTT-CCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cCeEEEEECCC-CCEEeEecC--CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCE
Confidence 35677777765 343333321 11111 113345778888999999999999999998887655432333456666776
Q ss_pred EE
Q 029743 137 FL 138 (188)
Q Consensus 137 ~l 138 (188)
.+
T Consensus 529 qy 530 (599)
T 1w6s_A 529 QY 530 (599)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00027 Score=50.02 Aligned_cols=150 Identities=11% Similarity=0.047 Sum_probs=84.7
Q ss_pred CeeecccCeEEEEeCCC--cEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce--
Q 029743 1 MTFAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-- 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-- 75 (188)
++++++|+++++....+ .|..++..+++...... ........++..+++..+++-..++.|..+|.......+..
T Consensus 77 ia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~ 156 (306)
T 2p4o_A 77 LAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH 156 (306)
T ss_dssp EEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEEC
Confidence 46788888655543322 46667777776533222 11223345554454444555445788888886531111110
Q ss_pred -------eeeccCCceeEEeecCCCEEEEe-cCCCeEEEEeccc-Cee--eeecccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 76 -------FVGLSPNSVDALLKLDEDRVITG-SENGLISLVGILP-NRI--IQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 76 -------~~~~~~~~v~~~~~~~~~~l~~~-~~d~~v~~~d~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
... .-.....+ +|+++.|+.+ ...+.|..+++.. +.. ...+... . ....+++.++|+++++....
T Consensus 157 ~~~~~~~~~~-~~~~pngi-s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~-~P~gi~vd~dG~l~va~~~~ 232 (306)
T 2p4o_A 157 PMLARSNSES-VFPAANGL-KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-T-NIDDFAFDVEGNLYGATHIY 232 (306)
T ss_dssp GGGSCSSTTC-CSCSEEEE-EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-C-CCSSEEEBTTCCEEEECBTT
T ss_pred CccccccccC-CCCcCCCc-CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-C-CCCCeEECCCCCEEEEeCCC
Confidence 001 11123344 8888766554 5678899999864 321 1111111 2 35678999999877766677
Q ss_pred CcEEEEeCCC
Q 029743 145 SMLKLWDLDD 154 (188)
Q Consensus 145 ~~i~iwd~~~ 154 (188)
+.|.+++...
T Consensus 233 ~~V~~~~~~G 242 (306)
T 2p4o_A 233 NSVVRIAPDR 242 (306)
T ss_dssp CCEEEECTTC
T ss_pred CeEEEECCCC
Confidence 8999998763
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00046 Score=50.68 Aligned_cols=152 Identities=11% Similarity=-0.009 Sum_probs=90.2
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEE-EEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|++.++.|+... ..+.|+.+++........+.........+++.+.+..| ++-...+.|.+.+++. .....+..
T Consensus 121 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~~~l~~ 198 (386)
T 3v65_B 121 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW 198 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS--CSCEEEEC
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC--CceEEeec
Confidence 35666555555443 45778888877654433333223355788888755544 4555567888888753 33333322
Q ss_pred ccCCceeEE-eecCCCEEEEec-CC-CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGS-EN-GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~d-~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (188)
..-.....+ +.|.+..|+... .. +.|..+++........+...-. ....|+++|++..|+.+. ..+.|..+++..
T Consensus 199 ~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~-~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 199 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF-WPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS-CEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCC-CeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 033456677 688666555443 44 6788888764332222222222 578999998777665554 567899999875
Q ss_pred c
Q 029743 155 I 155 (188)
Q Consensus 155 ~ 155 (188)
.
T Consensus 278 ~ 278 (386)
T 3v65_B 278 S 278 (386)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00016 Score=55.95 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=40.1
Q ss_pred CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 101 NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 101 d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
+|.|..||+.+++.+.+..... ++..-.....+..++.++.|+.|+.||.++++..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 5789999999998877665432 2332222334667888999999999999988754
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0013 Score=48.61 Aligned_cols=153 Identities=9% Similarity=-0.053 Sum_probs=89.9
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCCC----ceeeeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~ 74 (188)
|+|++..+.|+.+. ..+.|+.+++... .....+.........+++.+.+ ++.++-...+.|.+.+++. ....
T Consensus 117 l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g--~~~~ 194 (400)
T 3p5b_L 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 194 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT--CSEE
T ss_pred EeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC--CceE
Confidence 35666555555554 3567777776542 1222222233467889998844 4445555677888888763 3333
Q ss_pred eeeeccCCceeEE-eecCCCEEEEec-C-CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGS-E-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLW 150 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~-~-d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw 150 (188)
.+....-.....+ +.|.+.+|+... . .+.|...++........+...-. ....|++++++..|+.+. ..+.|..+
T Consensus 195 ~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~-~P~glavd~~~~~lY~aD~~~~~I~~~ 273 (400)
T 3p5b_L 195 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSI 273 (400)
T ss_dssp EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC-ceEEEEEEeCCCEEEEEECCCCEEEEE
Confidence 3322033446777 688666555443 2 46788888864333222222223 578999998877776664 45789999
Q ss_pred eCCCcc
Q 029743 151 DLDDIL 156 (188)
Q Consensus 151 d~~~~~ 156 (188)
|+....
T Consensus 274 d~dG~~ 279 (400)
T 3p5b_L 274 DVNGGN 279 (400)
T ss_dssp ETTSCC
T ss_pred eCCCCc
Confidence 987543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0011 Score=48.65 Aligned_cols=150 Identities=11% Similarity=-0.029 Sum_probs=85.1
Q ss_pred eeecccCeEEEE-eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC-C-CeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-S-GTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~~~~ 78 (188)
++.+.+..|+.+ ...+.|.+.++........+...-.....+++.|.+..|+.+.. . +.|..++++ +.....+..
T Consensus 165 avd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 242 (386)
T 3v65_B 165 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIAD 242 (386)
T ss_dssp EEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEE
Confidence 455544444443 33456777666544332233333356789999987666655443 3 577777775 333333332
Q ss_pred ccCCceeEE-eecCCCEEEE-ecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 79 LSPNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~-~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
..-.....+ ++|++..|+. -...+.|..+++........+..... ....|++. .+..+.+-...+.|..++..++
T Consensus 243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCC
Confidence 023345677 7876665554 45677899999864333222322223 46778884 4444555556778888885443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00047 Score=53.56 Aligned_cols=57 Identities=14% Similarity=-0.055 Sum_probs=39.1
Q ss_pred CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 100 ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 100 ~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
..|.|..||+.+++.+.+..... ++..-.+...+..++.++.|+.|+.||.++++..
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 34789999999998877664321 2222122335667777899999999999987643
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00022 Score=56.14 Aligned_cols=149 Identities=17% Similarity=0.137 Sum_probs=93.8
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccc----cceEE-EEEEeCCCEEEEecC------CCeEEEEEeCCcccccc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE----EELTS-VVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~ 74 (188)
.+..+++++.++.|+.+|..+|+.+....... ..+.+ ... .+..++++.. ++.|..+|..+ ++.+.
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W 192 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADT-GKLAW 192 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTT-CCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCC-CcEEE
Confidence 35678888889999999999999887765321 11111 111 1334555443 57899999876 34444
Q ss_pred eeeeccC-------------------------------CceeEE-eecCCCEEEEecCCC-------------------e
Q 029743 75 RFVGLSP-------------------------------NSVDAL-LKLDEDRVITGSENG-------------------L 103 (188)
Q Consensus 75 ~~~~~~~-------------------------------~~v~~~-~~~~~~~l~~~~~d~-------------------~ 103 (188)
.+.. .. .....+ +.|+..+++.+..++ .
T Consensus 193 ~~~~-~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 193 RFYT-VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp EEES-SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred Eecc-cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 3321 00 001123 577778888887665 3
Q ss_pred EEEEecccCeeeeecccCC-C-------cceeEEEeeCCCC---EEEEEeCCCcEEEEeCCCccCC
Q 029743 104 ISLVGILPNRIIQPIAEHS-E-------YPIESLALSHDRK---FLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 104 v~~~d~~~~~~~~~~~~~~-~-------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
|..+|.++|+.+..++... . .+.....+..+++ .++.++.+|.++++|..+++..
T Consensus 272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 9999999999887765421 1 1222223334665 6888889999999999887643
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0011 Score=49.50 Aligned_cols=150 Identities=7% Similarity=-0.005 Sum_probs=86.8
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeee-c-ccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeCCccccc---
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-E-FSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCS--- 73 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~--- 73 (188)
++++| ++++.++-..++.|+.++..++.....+ . +.......++++|+++.|+.+ ...+.|+.++++.....+
T Consensus 233 iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~ 312 (433)
T 4hw6_A 233 CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVP 312 (433)
T ss_dssp CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCC
T ss_pred EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcE
Confidence 46778 5554445445678999998766552222 2 112233579999999855544 456789998875311111
Q ss_pred ceeeecc---------------CCceeEE-e---------ecCCCEEEEecCCCeEEEEecccCeeeeecccCC------
Q 029743 74 DRFVGLS---------------PNSVDAL-L---------KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------ 122 (188)
Q Consensus 74 ~~~~~~~---------------~~~v~~~-~---------~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~------ 122 (188)
..+.+ . -.....+ + .++|.++++-...+.|+.++. .+... ++.+..
T Consensus 313 ~~~ag-~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G 389 (433)
T 4hw6_A 313 YIVCG-QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWG 389 (433)
T ss_dssp EEEEE-CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSC
T ss_pred EEEEe-cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccc
Confidence 12222 1 0123445 5 456666666667788999885 45432 221110
Q ss_pred --C---------cceeEEEee-CCCCEEEEEeCCCcEEEEeCC
Q 029743 123 --E---------YPIESLALS-HDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 123 --~---------~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~ 153 (188)
. .....|++. +++.++++-...+.|+.++++
T Consensus 390 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 390 YVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 0 136789999 566655555566788887764
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0013 Score=49.87 Aligned_cols=155 Identities=12% Similarity=0.056 Sum_probs=89.0
Q ss_pred CeeecccCeEE-EEeCCCcEEEEEcC-------CCce-----------eee-ec-ccccceEEEEEEeCCCEEEEe-cCC
Q 029743 1 MTFAADAMKLL-GTSGDGTLSVCNLR-------KNTV-----------QTR-SE-FSEEELTSVVLMKNGRKVVCG-SQS 58 (188)
Q Consensus 1 l~~s~~~~~l~-~~~~d~~i~i~~~~-------~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~l~~~-~~d 58 (188)
++++|++..|+ +-..++.|+.+|+. ++.. ... +. +.......++|+|+++.|+.+ ...
T Consensus 252 iavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~ 331 (496)
T 3kya_A 252 ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINN 331 (496)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred EEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCC
Confidence 35678555555 44566789999987 4443 111 11 223446799999999965554 556
Q ss_pred CeEEEEEeCCccccc---ceeeecc---C------------Ccee-EEe-e-------cCCCEEEEecCCCeEEEEeccc
Q 029743 59 GTVLLYSWGYFKDCS---DRFVGLS---P------------NSVD-ALL-K-------LDEDRVITGSENGLISLVGILP 111 (188)
Q Consensus 59 ~~i~~~d~~~~~~~~---~~~~~~~---~------------~~v~-~~~-~-------~~~~~l~~~~~d~~v~~~d~~~ 111 (188)
+.|+.++.+.....+ ..+.+ . . .... .++ . ++|.++++=..++.|+.++. +
T Consensus 332 h~I~kid~dg~~~~~~~~~~~aG-~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~ 409 (496)
T 3kya_A 332 HYFMRSDYDEIKKEFITPYNFVG-GYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-E 409 (496)
T ss_dssp TEEEEEEEETTTTEECCCEEEEE-BTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-T
T ss_pred CEEEEEecCCCcceecccEEecC-CCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-C
Confidence 788887764311111 22222 1 0 1122 333 3 45566666667888999984 4
Q ss_pred CeeeeecccC--------------CC---------cceeEEEeeCC-CCEEEEEeCCCcEEEEeCCCccCC
Q 029743 112 NRIIQPIAEH--------------SE---------YPIESLALSHD-RKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 112 ~~~~~~~~~~--------------~~---------~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
+. +.++.+. .+ .....|++.++ +.++++=.....|+.++++.....
T Consensus 410 G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 410 GI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp CB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 53 3333221 01 13678999986 665555556788999988765544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0025 Score=46.05 Aligned_cols=150 Identities=11% Similarity=-0.033 Sum_probs=85.5
Q ss_pred eeecccCeEEEE-eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec-CC-CeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QS-GTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~~~d~~~~~~~~~~~~~ 78 (188)
++.+.+..|+.+ ...+.|.+.++........+...-.....+++.|.+..|+.+. .. +.|..++++ +.....+..
T Consensus 122 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 199 (349)
T 3v64_C 122 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIAD 199 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCC
T ss_pred EEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEE
Confidence 455544444444 3456788888765433323333335678999999665555443 34 678888875 333333322
Q ss_pred ccCCceeEE-eecCCCEEEEe-cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 79 LSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
..-.....+ ++|++..|+.+ ...+.|..+++........+..... ....+++. .+..+.+-...+.|..++..++
T Consensus 200 ~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 200 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCC
Confidence 023345677 78766655544 4677899999864332222322223 46778884 4444445556678888874443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0024 Score=45.55 Aligned_cols=150 Identities=10% Similarity=-0.022 Sum_probs=88.3
Q ss_pred eeecccCeEEEEe-CCCcEEEEEcCCCcee-eeecccccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCcccccceee-
Q 029743 2 TFAADAMKLLGTS-GDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (188)
Q Consensus 2 ~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~- 77 (188)
+|++.++.|+.+. ..+.|+.+++..+... ..+...-.....+++.+.+. +.++-...+.|.+++++. .....+.
T Consensus 41 d~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~ 118 (318)
T 3sov_A 41 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFW 118 (318)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC--CcEEEEEe
Confidence 4666545554443 4567777777654321 12222223567888987554 445555677899999863 3333332
Q ss_pred eccCCceeEE-eecCCCEEEEec--CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCC
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (188)
. .......+ +.|.+..|+... ..+.|...++........+...-. ....|++++++..|+.+. ..+.|..+++.
T Consensus 119 ~-~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~-~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 119 Q-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY-WPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp S-SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCC-CccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 3 33456677 688666555544 357888888763322222222212 568999999777766554 56789999987
Q ss_pred Cc
Q 029743 154 DI 155 (188)
Q Consensus 154 ~~ 155 (188)
..
T Consensus 197 G~ 198 (318)
T 3sov_A 197 GT 198 (318)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0057 Score=49.15 Aligned_cols=152 Identities=9% Similarity=-0.042 Sum_probs=88.1
Q ss_pred eeecccCeEEEEe-CCCcEEEEEcCCC----ceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTS-GDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~-~d~~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
+|++..+.|+.+. ..+.|+.+++... .....+.........|++.+.++.|+ +-...+.|.+.+++. .....
T Consensus 430 ~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG--~~~~~ 507 (791)
T 3m0c_C 430 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKT 507 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEE
T ss_pred eecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC--CeEEE
Confidence 4555444444443 3456776776542 22222322334567899988775555 555567899999863 33333
Q ss_pred eeeccCCceeEE-eecCCCEEEEec-C-CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEe
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGS-E-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWD 151 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~-~-d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd 151 (188)
+....-.....| +.|.+.+|+... . .+.|...++........+...-. ....|++.+.+..|+.+. ....|..++
T Consensus 508 l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~-~P~GLavD~~~~~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 508 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSID 586 (791)
T ss_dssp EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC-CceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 432033456777 688755555443 3 36788888864433333332223 678999998777776654 456788888
Q ss_pred CCCcc
Q 029743 152 LDDIL 156 (188)
Q Consensus 152 ~~~~~ 156 (188)
+....
T Consensus 587 ~dG~~ 591 (791)
T 3m0c_C 587 VNGGN 591 (791)
T ss_dssp TTSCS
T ss_pred cCCCc
Confidence 86543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0024 Score=47.62 Aligned_cols=151 Identities=9% Similarity=0.054 Sum_probs=85.0
Q ss_pred Ceeec-ccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCc-ccc--cc
Q 029743 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYF-KDC--SD 74 (188)
Q Consensus 1 l~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~-~~~--~~ 74 (188)
++++| ++.++++-...+.|+.++...+....... ........++|+|++++|+ +-...+.|..++.+.. +.. ..
T Consensus 231 iavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~ 310 (430)
T 3tc9_A 231 AETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPY 310 (430)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred EEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceE
Confidence 35778 55555555567889999987665422222 1223567999999999554 4456778999887531 111 12
Q ss_pred eeeecc---------------CCcee-EEe-e--------cCCCEEEEecCCCeEEEEecccCeeeeeccc----CC---
Q 029743 75 RFVGLS---------------PNSVD-ALL-K--------LDEDRVITGSENGLISLVGILPNRIIQPIAE----HS--- 122 (188)
Q Consensus 75 ~~~~~~---------------~~~v~-~~~-~--------~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~----~~--- 122 (188)
.+.+ . -.... .++ . ++|.++++-...+.|+.++. .+........ ..
T Consensus 311 ~~ag-~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~ 388 (430)
T 3tc9_A 311 IVCG-QQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYN 388 (430)
T ss_dssp EEEE-CTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCB
T ss_pred EEec-cCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCccc
Confidence 2222 1 00112 232 2 23555555556778888883 4543222110 00
Q ss_pred C---------cceeEEEeeCC-CCEEEEEeCCCcEEEEeCC
Q 029743 123 E---------YPIESLALSHD-RKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 123 ~---------~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~ 153 (188)
+ .....+++.++ +.++++-.....|+.++++
T Consensus 389 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 389 DGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 0 14688999995 5555555566788887764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00018 Score=56.97 Aligned_cols=152 Identities=10% Similarity=-0.043 Sum_probs=85.7
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCC----CceeeeecccccceEEEEEEeCCC-EEEEecCCCeEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~ 74 (188)
|+|++.++.|+.+. ..+.|+.+++.. ......+.........|++.+.+. ++++-...+.|.++++.. ....
T Consensus 411 la~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg--~~~~ 488 (699)
T 1n7d_A 411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 488 (699)
T ss_dssp CEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS--CCEE
T ss_pred EccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC--CceE
Confidence 46777666666654 357888888765 222222221223456788876444 444445567898888763 3333
Q ss_pred eeeeccCCceeEE-eecCCCEEEEec-C-CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEE-eCCCcEEEE
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGS-E-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLW 150 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~-~-d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iw 150 (188)
.+..........+ +.|.+.+|+... . .+.|..+++........+...-. ....|+|+|++..|+.+ ...+.|.++
T Consensus 489 ~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~-~PnGlavd~~~~~LY~aD~~~~~I~~~ 567 (699)
T 1n7d_A 489 TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSI 567 (699)
T ss_dssp EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS-SCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC-CccEEEEeccCCEEEEEecCCCeEEEE
Confidence 3322022344556 577655555443 2 36788877753322212222212 46789999976666544 456789999
Q ss_pred eCCCc
Q 029743 151 DLDDI 155 (188)
Q Consensus 151 d~~~~ 155 (188)
++...
T Consensus 568 d~dG~ 572 (699)
T 1n7d_A 568 DVNGG 572 (699)
T ss_dssp CSSSS
T ss_pred ccCCC
Confidence 98653
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00033 Score=54.97 Aligned_cols=112 Identities=13% Similarity=-0.014 Sum_probs=69.2
Q ss_pred eeec-ccCeEEEEeCCC-----------cEEEEEcCCCcee--eeec-ccccceEEEEEEeCCCEEEEecC-CCeEEEEE
Q 029743 2 TFAA-DAMKLLGTSGDG-----------TLSVCNLRKNTVQ--TRSE-FSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYS 65 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~-----------~i~i~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d 65 (188)
++.| +++.++.|+.+. .+.+||+.+++-. ..+. .+.....++++..+++.+++|+. +..+.+||
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd 271 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 271 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEec
Confidence 4556 788888887542 5788998876432 2222 12233445777789999999884 45799999
Q ss_pred eCCcc-cccceeeeccCCceeEEeecCCCEEEEec-CC-----CeEEEEecccCee
Q 029743 66 WGYFK-DCSDRFVGLSPNSVDALLKLDEDRVITGS-EN-----GLISLVGILPNRI 114 (188)
Q Consensus 66 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d-----~~v~~~d~~~~~~ 114 (188)
..+.. ..+..+.. ......++..++|++++.|+ .+ ..+.+||..+.+-
T Consensus 272 ~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 272 SSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp GGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred CcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 86421 11111111 12222233567899999988 34 4689999987653
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0051 Score=45.57 Aligned_cols=142 Identities=13% Similarity=0.177 Sum_probs=87.1
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeeccc----ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc---------cc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------DC 72 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~ 72 (188)
+|..++.+ .++.||..++..+...+.+... -..+..+..+|+|++|+..+.. .|.+-.+..+. ..
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccc
Confidence 33344443 2366776676644333444322 2257889999999999988654 78888886211 01
Q ss_pred cc--eeee-----ccCCceeEE-eec---CCCEEEEecCCCeEEEEecccC--eeeeecccCC--------CcceeEEEe
Q 029743 73 SD--RFVG-----LSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPN--RIIQPIAEHS--------EYPIESLAL 131 (188)
Q Consensus 73 ~~--~~~~-----~~~~~v~~~-~~~---~~~~l~~~~~d~~v~~~d~~~~--~~~~~~~~~~--------~~~v~~~~~ 131 (188)
++ .+.- ....+|..+ |+| .+..|++-..|+.|++||+... ++. .+.... ...|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 11 1211 013457777 887 4668999999999999999752 222 221110 025889999
Q ss_pred eCCCCEEEEEe--CCCcEEEE
Q 029743 132 SHDRKFLGSIS--HDSMLKLW 150 (188)
Q Consensus 132 ~~~~~~l~~~~--~d~~i~iw 150 (188)
..++-.|...+ ..|.|+-.
T Consensus 188 g~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCcEEEEEecCCCCCEEEE
Confidence 99887776644 67776654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0051 Score=44.43 Aligned_cols=136 Identities=16% Similarity=0.183 Sum_probs=86.8
Q ss_pred CCcEEEEEcC--CCceeeeecc------cc-cceEEEEE--EeC-CC-EEEEecCCCeEEEEEeCC------ccccccee
Q 029743 16 DGTLSVCNLR--KNTVQTRSEF------SE-EELTSVVL--MKN-GR-KVVCGSQSGTVLLYSWGY------FKDCSDRF 76 (188)
Q Consensus 16 d~~i~i~~~~--~~~~~~~~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~d~~i~~~d~~~------~~~~~~~~ 76 (188)
+++|.+|++. ++. +..+.. .. ..+..+++ +|. ++ ++++...++.+..|++.. ..+.++.+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 4789999773 333 333311 11 45677777 664 43 688888899999999832 12445666
Q ss_pred eeccCCceeEEeecCCCEEEEecCCCeEEEEecc-----cCeeeeecc-cCCCcceeEEEee--CCCC-EEEEEe-CCCc
Q 029743 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGIL-----PNRIIQPIA-EHSEYPIESLALS--HDRK-FLGSIS-HDSM 146 (188)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~-----~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~~-~d~~ 146 (188)
.- ...+-.|+..+...+|+.+-.+.-|..++.+ +++.+..+. ++-...+..|++. ++++ +|++++ .++.
T Consensus 177 ~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 177 KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 54 4333344478888899999988778888855 234444442 2212257888884 4555 666555 6779
Q ss_pred EEEEeCC
Q 029743 147 LKLWDLD 153 (188)
Q Consensus 147 i~iwd~~ 153 (188)
+.+||.+
T Consensus 256 ~~Vydr~ 262 (355)
T 3amr_A 256 YAIYDRQ 262 (355)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 9999996
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0052 Score=43.85 Aligned_cols=151 Identities=9% Similarity=-0.079 Sum_probs=86.5
Q ss_pred eeecccCeEEEE-eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC--CCeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++.+.+..|+.+ ...+.|.++++........+.........+++.|.+..|+.+.. .+.|...+++ +.....+..
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 162 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIIN 162 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEE
Confidence 445434444433 34567777777644332222233456789999997666665542 5678777775 333333322
Q ss_pred ccCCceeEE-eecCCCEEEEe-cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 79 LSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
..-.....+ ++|++..|+.+ ...+.|..+++........+..... ....+++.. +..+.+-...+.|..++..++.
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 023345677 78866655554 5678899999864332222222223 467788753 3344455566889989886554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0096 Score=43.90 Aligned_cols=151 Identities=13% Similarity=-0.079 Sum_probs=86.1
Q ss_pred eeecccCeEEEE-eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC--CCeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++.+.++.|+.+ ...+.|.+.++........+.........|++.|.+..|+.+.. .+.|...+++ +.....+..
T Consensus 165 avD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--G~~~~~~~~ 242 (400)
T 3p5b_L 165 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 242 (400)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--SCSCEEEEC
T ss_pred EEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--CCccEEEEE
Confidence 445533444433 34567777776654443333333445789999997666665542 3678888775 344333332
Q ss_pred ccCCceeEE-eecCCCEEEEe-cCCCeEEEEecccCeeeeeccc--CCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 79 LSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAE--HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
..-.....+ +++++..|+.+ ...+.|..+|+........+.. ... ....+++. .+..+.+-...+.|..++..+
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~-~P~gl~v~-~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA-HPFSLAVF-EDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTS-SEEEEEEE-TTEEEEEESSSCSEEEEESSS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCC-CCEEEEEe-CCEEEEecCCCCeEEEEEcCC
Confidence 033456777 78777666655 4567899999865433222222 112 35567774 333444555667888888655
Q ss_pred cc
Q 029743 155 IL 156 (188)
Q Consensus 155 ~~ 156 (188)
+.
T Consensus 321 G~ 322 (400)
T 3p5b_L 321 GS 322 (400)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0077 Score=42.82 Aligned_cols=150 Identities=13% Similarity=-0.063 Sum_probs=87.1
Q ss_pred eeecccCeEEEE-eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC--CeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~ 78 (188)
++.+.++.|+.+ ...+.|.++++........+.........+++.|.+..|+.+... +.|...+++ +.....+..
T Consensus 83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~~~ 160 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 160 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEEC
T ss_pred EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--CCCeEEEEE
Confidence 455544444444 456778888876543332333233567899999966666555443 678888775 333333322
Q ss_pred ccCCceeEE-eecCCCEEEEe-cCCCeEEEEecccCeeeeec-cc--CCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 79 LSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPI-AE--HSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
..-.....+ +++++..|+.+ ...+.|..+|+.... ...+ .. ... ....+++. .+..+++-...+.|..++..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~-~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLA-HPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTS-SEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccC-CcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 023445667 68876666554 466789999987432 2222 11 112 45678885 34445555567888888875
Q ss_pred Ccc
Q 029743 154 DIL 156 (188)
Q Consensus 154 ~~~ 156 (188)
++.
T Consensus 238 ~g~ 240 (316)
T 1ijq_A 238 TGS 240 (316)
T ss_dssp TCC
T ss_pred CCc
Confidence 443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.014 Score=46.81 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=86.6
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeecc--------cccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee---
Q 029743 10 LLGTSGDGTLSVCNLRKNTVQTRSEF--------SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG--- 78 (188)
Q Consensus 10 l~~~~~d~~i~i~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--- 78 (188)
|-.|+.++-|..|+..++........ ....|.+++..++++.|..|+.++-+.++|.... . ...+..
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~-~-~~~~~~~~~ 447 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG-Q-VENFNQRNS 447 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC-C-EEEECTTTS
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC-c-EEEeecCCC
Confidence 44566666788888776654332211 1356889988888885677777777999997642 2 222221
Q ss_pred -ccCCceeEEe-ecCCCEEEEecCCCeEEEEecccCeeeeeccc-----CCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 79 -LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE-----HSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 79 -~~~~~v~~~~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.....+.+++ .++|.+.+.. .. -|.+|+..+++....... .....|.++...+++...+.. . +.|..|+
T Consensus 448 ~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~ 523 (795)
T 4a2l_A 448 QLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFK 523 (795)
T ss_dssp CCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEE
T ss_pred CcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEe
Confidence 0234677774 6677755544 44 488899877654332211 111268899888888766544 3 5688888
Q ss_pred CCCcc
Q 029743 152 LDDIL 156 (188)
Q Consensus 152 ~~~~~ 156 (188)
..+..
T Consensus 524 ~~~~~ 528 (795)
T 4a2l_A 524 QEGLD 528 (795)
T ss_dssp EETTE
T ss_pred CCCCe
Confidence 76543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0019 Score=43.50 Aligned_cols=141 Identities=7% Similarity=-0.075 Sum_probs=75.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee------eeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ------TRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~------~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
|+|+|+|.+.++ .++.++-.+..+.... ..+- +-. ...++.|.|+|.+.++ .||.|.-++-.+.+..
T Consensus 46 laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~ 120 (236)
T 1tl2_A 46 LFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTD 120 (236)
T ss_dssp EEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC
T ss_pred EEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCC
Confidence 579998876666 6688877776542211 1110 111 1478899999988777 5688877765321111
Q ss_pred c----ceeeec-cCCceeEE-eecCCCEEEEecCCCeEEEEecccCee-----eeecccCCCc-ceeEEEeeCCCCEEEE
Q 029743 73 S----DRFVGL-SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI-----IQPIAEHSEY-PIESLALSHDRKFLGS 140 (188)
Q Consensus 73 ~----~~~~~~-~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~-----~~~~~~~~~~-~v~~~~~~~~~~~l~~ 140 (188)
- ....+. .-..+..+ +.|+|.+.++. ++.++-....++.. ..+.-++.+. .-..+.|.+++...++
T Consensus 121 ~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v 198 (236)
T 1tl2_A 121 NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGV 198 (236)
T ss_dssp CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEE
T ss_pred ceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEE
Confidence 0 011110 12456777 58999887777 67654332221110 0111111111 3345668888877665
Q ss_pred EeCCCcEEEEeC
Q 029743 141 ISHDSMLKLWDL 152 (188)
Q Consensus 141 ~~~d~~i~iwd~ 152 (188)
. ++ ++|..
T Consensus 199 ~--~g--~~Y~~ 206 (236)
T 1tl2_A 199 Q--GG--KFYED 206 (236)
T ss_dssp E--TT--EEEEE
T ss_pred e--CC--eEEec
Confidence 5 66 44444
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.01 Score=43.03 Aligned_cols=149 Identities=10% Similarity=0.082 Sum_probs=86.1
Q ss_pred eeecccCeEEEEe------------CCCcEEEEEcCC--Ccee-eeecc-----cccceEEEEEEe--CCC-EEEEe-cC
Q 029743 2 TFAADAMKLLGTS------------GDGTLSVCNLRK--NTVQ-TRSEF-----SEEELTSVVLMK--NGR-KVVCG-SQ 57 (188)
Q Consensus 2 ~~s~~~~~l~~~~------------~d~~i~i~~~~~--~~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l~~~-~~ 57 (188)
++.|+|..+++++ .+|.|.++|..+ ++.. ..+.+ .......+.+.+ +++ +|+++ ..
T Consensus 56 ~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~ 135 (355)
T 3sre_A 56 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP 135 (355)
T ss_dssp EECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred EEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC
Confidence 4567765544441 689999999874 2221 12222 234678888877 353 34433 33
Q ss_pred --CCeEEEEEeCCcccccc---eeeeccCCceeEE-eecCCCEEEEec-----------------CCCeEEEEecccCee
Q 029743 58 --SGTVLLYSWGYFKDCSD---RFVGLSPNSVDAL-LKLDEDRVITGS-----------------ENGLISLVGILPNRI 114 (188)
Q Consensus 58 --d~~i~~~d~~~~~~~~~---~~~~~~~~~v~~~-~~~~~~~l~~~~-----------------~d~~v~~~d~~~~~~ 114 (188)
+.+|.+|+++..+.... .+.+..-.....+ +.++|.+.++.. ..|.|+-++. ++.
T Consensus 136 ~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~ 213 (355)
T 3sre_A 136 GSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV 213 (355)
T ss_dssp TTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC
T ss_pred CCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE
Confidence 56888998865333222 2222012235566 688888777654 1244555554 333
Q ss_pred eeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCC
Q 029743 115 IQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (188)
Q Consensus 115 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (188)
.....+- . ..+.++|+||++.|+.+. ..+.|..|++..
T Consensus 214 ~~~~~~l-~-~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 214 RVVAEGF-D-FANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEEE-S-SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EEeecCC-c-ccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 2222222 2 468999999998877655 568999999863
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0029 Score=45.83 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=53.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee--eeec---ccccceEEEEEEeC---CCEEEEecC-C-----CeEEEEEe
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSE---FSEEELTSVVLMKN---GRKVVCGSQ-S-----GTVLLYSW 66 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----~~i~~~d~ 66 (188)
|+|.|+|++++ +...+.|++++ .++.. ..+. ........++++|+ +..|+++.. . ..|..++.
T Consensus 36 ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~ 112 (352)
T 2ism_A 36 LAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH 112 (352)
T ss_dssp EEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred EEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence 47899998554 46669999988 44321 1111 12346889999998 555554433 2 56778887
Q ss_pred CCcc----c-ccceee--eccCCceeEE-eecCCCEEEEe
Q 029743 67 GYFK----D-CSDRFV--GLSPNSVDAL-LKLDEDRVITG 98 (188)
Q Consensus 67 ~~~~----~-~~~~~~--~~~~~~v~~~-~~~~~~~l~~~ 98 (188)
.... + .+..+. .........+ +.|+|.+.++.
T Consensus 113 ~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 113 LGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp CSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred CCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 5310 1 111111 0011123456 78999766654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.022 Score=45.86 Aligned_cols=151 Identities=11% Similarity=-0.103 Sum_probs=86.0
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC--CCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~ 77 (188)
|++.+.++.|+.+. ..+.|.+.++........+...-.....|++.|....|+.+.. .+.|...+++ +.....+.
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--G~~~~~lv 553 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLV 553 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEE
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC--CCceEEEE
Confidence 35566565555543 4577888887654433333333456789999997666665543 2678888775 34444443
Q ss_pred eccCCceeEE-eecCCCEEEEe-cCCCeEEEEecccCeeeeecccCC-CcceeEEEeeCCCCEEEEE-eCCCcEEEEeCC
Q 029743 78 GLSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSI-SHDSMLKLWDLD 153 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~ 153 (188)
...-.....| +.+.+..|+.+ ...+.|..+++........+.... -.....|++. +..|+.+ ...+.|...+..
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCC
Confidence 2033456777 67666655554 456789999986443333322211 0134566664 3345444 455777777755
Q ss_pred Cc
Q 029743 154 DI 155 (188)
Q Consensus 154 ~~ 155 (188)
++
T Consensus 632 tG 633 (791)
T 3m0c_C 632 TG 633 (791)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.011 Score=46.13 Aligned_cols=152 Identities=9% Similarity=-0.065 Sum_probs=85.5
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC--CCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~ 77 (188)
|++.+.++.|+.+. ..+.|.+.++........+...-.....|++.|.+..|+.+.. .+.|...+++ +.....+.
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d--G~~~~~l~ 166 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIII 166 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEE
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC--CCceEEEE
Confidence 35666555555554 4578888887754432233233445789999997666655543 3566666664 44444443
Q ss_pred eccCCceeEE-eecCCCEEEEe-cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 78 GLSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
...-.....+ ++++++.|+.+ ...+.|..+++........+.+... ...+|++..+ ..+.+-...+.|...|..++
T Consensus 167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 2033446677 68766655544 4667899999865443322221212 3457777655 33334445678888887665
Q ss_pred c
Q 029743 156 L 156 (188)
Q Consensus 156 ~ 156 (188)
.
T Consensus 245 ~ 245 (619)
T 3s94_A 245 E 245 (619)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.012 Score=42.15 Aligned_cols=148 Identities=6% Similarity=-0.005 Sum_probs=88.2
Q ss_pred ecccCeEEEEeC-------------CCcEEEEEcC---CCceeeeec--cc-----------ccceEEEEEEeCCCEEEE
Q 029743 4 AADAMKLLGTSG-------------DGTLSVCNLR---KNTVQTRSE--FS-----------EEELTSVVLMKNGRKVVC 54 (188)
Q Consensus 4 s~~~~~l~~~~~-------------d~~i~i~~~~---~~~~~~~~~--~~-----------~~~v~~~~~~~~~~~l~~ 54 (188)
.|+++++++... ++.|..+|+. +++.+.... .. ......++..++|+..++
T Consensus 74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt 153 (334)
T 2p9w_A 74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA 153 (334)
T ss_dssp SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence 577777775442 5779999998 676654432 11 124789999999999998
Q ss_pred ecCC-CeEEEEEeCCcccccceeeec-----cCCceeEE-eecCCCEEEEecCCCeEEEEecccCee--eeecc--cC--
Q 029743 55 GSQS-GTVLLYSWGYFKDCSDRFVGL-----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPIA--EH-- 121 (188)
Q Consensus 55 ~~~d-~~i~~~d~~~~~~~~~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~--~~~~~--~~-- 121 (188)
++.. +.|...+.+ +..+..+.-. .......+ ++|+|..|++....+.|..+|+..... +. +. +.
T Consensus 154 ~s~~~~~I~rV~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~ 230 (334)
T 2p9w_A 154 FALGMPAIARVSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFG 230 (334)
T ss_dssp EEESSCEEEEECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCC
T ss_pred CCCCCCeEEEEeCC--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcc
Confidence 8887 776555543 3333332210 11124566 799999888887799999999874322 11 11 11
Q ss_pred CCcceeEE-EeeCCCCEE-EEEeCCCcEEEEeCCC
Q 029743 122 SEYPIESL-ALSHDRKFL-GSISHDSMLKLWDLDD 154 (188)
Q Consensus 122 ~~~~v~~~-~~~~~~~~l-~~~~~d~~i~iwd~~~ 154 (188)
.......| ....+|+.| ++....+.+.+.+...
T Consensus 231 ~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 231 TLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp CCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred cccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 00012333 333477774 4444556555555443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.012 Score=41.63 Aligned_cols=139 Identities=6% Similarity=-0.059 Sum_probs=83.3
Q ss_pred eecccCeEEEEeCC--------------CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec--CCCeEEEEEe
Q 029743 3 FAADAMKLLGTSGD--------------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSW 66 (188)
Q Consensus 3 ~s~~~~~l~~~~~d--------------~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~ 66 (188)
+++++++|+.+... ..|+..++..++....... . +..|+++++.|+-.. .++.-.||.+
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 57888888877543 3577777766543322221 1 236788898888765 3445555555
Q ss_pred CCcccccceeeeccCCceeEE-eecCCCEEEEecC-CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
...+...+.+.. +.. . ++++++.|+-.+. ...|.+.++..+.....+.+ ... ..++|++.+|+-....
T Consensus 135 ~~dGs~~~~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~-~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 135 RIDGEEKKKIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCY-KPVVLDDTNVYYMDVN 204 (302)
T ss_dssp ETTSCCCEEEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEE-EEEEEETTEEEEEEGG
T ss_pred ECCCCCeEEEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC----Ccc-ceeeecCCEEEEEEcC
Confidence 444555555654 432 3 5888888775554 67788888876654433332 222 3466888888766533
Q ss_pred --CcEEEEeCCCcc
Q 029743 145 --SMLKLWDLDDIL 156 (188)
Q Consensus 145 --~~i~iwd~~~~~ 156 (188)
..|..-++....
T Consensus 205 ~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 205 RDNAIVHVNINNPN 218 (302)
T ss_dssp GTTEEEEECSSSCC
T ss_pred CCcEEEEEECCCCC
Confidence 356666665544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.012 Score=42.56 Aligned_cols=138 Identities=12% Similarity=0.116 Sum_probs=74.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee--eeec----ccccceEEEEEEeC---CCEEEEe---cCCCeEEEEEeCC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSE----FSEEELTSVVLMKN---GRKVVCG---SQSGTVLLYSWGY 68 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~----~~~~~v~~~~~~~~---~~~l~~~---~~d~~i~~~d~~~ 68 (188)
|+|.|+|+++++--..|.|++++...+... ..+. ........|+++|+ +..|+.. ..++.|.-|.+..
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDE 116 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCC
Confidence 578999987766544899999986655432 1121 22456899999985 3444432 2345566666543
Q ss_pred cc-------cccceeeec---cCCceeEE-eecCCCEEEEecC-------------CCeEEEEecccC---------eee
Q 029743 69 FK-------DCSDRFVGL---SPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPN---------RII 115 (188)
Q Consensus 69 ~~-------~~~~~~~~~---~~~~v~~~-~~~~~~~l~~~~~-------------d~~v~~~d~~~~---------~~~ 115 (188)
.. .....+... .......+ |.|+|.+.++.+. .|.|.-.+.... ..+
T Consensus 117 ~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i 196 (347)
T 3das_A 117 KKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPV 196 (347)
T ss_dssp TSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCE
T ss_pred CCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeE
Confidence 10 111111110 11223446 7899987666432 345555554422 011
Q ss_pred eecccCCCcceeEEEeeCCCCEEEEE
Q 029743 116 QPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 116 ~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
.. .++. ....++|+|++.+.++-
T Consensus 197 ~a-~G~R--Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 197 YS-YGHR--NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp EE-BCCS--BCCEEEECTTCCEEEEE
T ss_pred Ee-eCCC--CcceEEECCCCCEEEEe
Confidence 11 2342 46789999987665433
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0081 Score=43.53 Aligned_cols=135 Identities=14% Similarity=0.065 Sum_probs=72.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc-eeeeec---ccccceEEEEEEeC---CCEEEEecC----C----CeEEEEE
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSE---FSEEELTSVVLMKN---GRKVVCGSQ----S----GTVLLYS 65 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----~~i~~~d 65 (188)
|+|.|+|++++ +..++.|++++ .+++ .+..+. ........|+++|+ +..|+++.. + ..|..|+
T Consensus 34 ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~ 111 (354)
T 3a9g_A 34 IAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGR 111 (354)
T ss_dssp EEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEE
T ss_pred EEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEE
Confidence 57889997544 46669999887 4454 222211 12346889999997 455554432 2 5677777
Q ss_pred eCCcc------cc-cceeeeccCCceeEE-eecCCCEEEEecC-------------CCeEEEEecccC---------eee
Q 029743 66 WGYFK------DC-SDRFVGLSPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPN---------RII 115 (188)
Q Consensus 66 ~~~~~------~~-~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-------------d~~v~~~d~~~~---------~~~ 115 (188)
..... +. +..+..........+ |.|+|.+.++.+. .|.|.-++.... ..+
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i 191 (354)
T 3a9g_A 112 LDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPI 191 (354)
T ss_dssp ECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCE
T ss_pred ECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcE
Confidence 65321 11 111111011123456 7899987666432 245665655421 011
Q ss_pred eecccCCCcceeEEEeeC-CCCEEEE
Q 029743 116 QPIAEHSEYPIESLALSH-DRKFLGS 140 (188)
Q Consensus 116 ~~~~~~~~~~v~~~~~~~-~~~~l~~ 140 (188)
.. .++. ....++|+| ++..+++
T Consensus 192 ~a-~G~r--np~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 192 WS-YGHR--NPQGIDWHRASGVMVAT 214 (354)
T ss_dssp EE-ECCS--CCCEEEECTTTCCEEEE
T ss_pred EE-EccC--CcceEEEeCCCCCEEEE
Confidence 11 2332 357899999 5655443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.031 Score=44.88 Aligned_cols=141 Identities=10% Similarity=0.038 Sum_probs=85.6
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeec----ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee--
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-- 78 (188)
+++++|..|+.++-|.+++..+++...... .....|.++...++++..+.. .+ -+.+|+.... ....+..
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~--~~~~~~~~~ 490 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQR--SFTTIEKEK 490 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTT--EEEECCBCT
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCC--eEEEccccc
Confidence 455536667776779999988775433221 124578899888877755544 34 4888887542 2222211
Q ss_pred ----ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc------cCCCcceeEEEeeCCCCEEEEEeCCCcE
Q 029743 79 ----LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA------EHSEYPIESLALSHDRKFLGSISHDSML 147 (188)
Q Consensus 79 ----~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i 147 (188)
.....+.++ ..++|++.+... +-|..|+..++.. .+. +.....|.++...++|...++.. . .|
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl 564 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GF 564 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CE
T ss_pred cccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-Cc
Confidence 012457777 467777665544 4588899877654 221 11112688898888887665443 3 57
Q ss_pred EEEeCCCc
Q 029743 148 KLWDLDDI 155 (188)
Q Consensus 148 ~iwd~~~~ 155 (188)
..||..+.
T Consensus 565 ~~~d~~~~ 572 (795)
T 4a2l_A 565 YCFNEKDK 572 (795)
T ss_dssp EEEETTTT
T ss_pred eeECCCCC
Confidence 88887654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.002 Score=51.08 Aligned_cols=151 Identities=13% Similarity=-0.061 Sum_probs=83.3
Q ss_pred eeecccCeEEEE-eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC--CCeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++.+.++.|+.+ ...+.|.++++........+.........+++.|.+..|+.+.. .+.|..++++ +.....+..
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--G~~~~~l~~ 536 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 536 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--SCCCCEESC
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--CCCeeEEEe
Confidence 444444444443 34577888887655433333322345678899986665555443 2677777765 333333321
Q ss_pred ccCCceeEE-eecCCCEE-EEecCCCeEEEEecccCeeeeeccc--CCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 79 LSPNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l-~~~~~d~~v~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
..-.....| ++|++..| ++-...+.|..+++........+.. ... ....|++..+ ..+++....+.|..++..+
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~-~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA-HPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCS-SCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCC-CceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 022334556 78765544 4555678899999864332222221 112 3456666544 3444555668899998765
Q ss_pred cc
Q 029743 155 IL 156 (188)
Q Consensus 155 ~~ 156 (188)
+.
T Consensus 615 G~ 616 (699)
T 1n7d_A 615 GS 616 (699)
T ss_dssp EE
T ss_pred CC
Confidence 43
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.016 Score=40.58 Aligned_cols=143 Identities=10% Similarity=0.029 Sum_probs=74.1
Q ss_pred ccCeEEEEeCC-----CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC-----CeEEEEEeCCccccc
Q 029743 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCS 73 (188)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~ 73 (188)
+++.++.|+.+ ..+.+||+.+.+-.. .++........+ .-+++.++.|+.+ ..+.+||+.+. ..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W 187 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV--VASGVIYCLGGYDGLNILNSVEKYDPHTG--HW 187 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTTT--EE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE--EECCEEEEECCCCCCcccceEEEEeCCCC--cE
Confidence 45666666543 357888887754322 222111111222 2367777777654 45888887642 22
Q ss_pred ceeeeccCC--ceeEEeecCCCEEEEecCC-----CeEEEEecccCeeee--ecccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 74 DRFVGLSPN--SVDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 74 ~~~~~~~~~--~v~~~~~~~~~~l~~~~~d-----~~v~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
..+.. ... .-.++...++++++.|+.+ ..+.+||+.+.+-.. .+..... .. .++. -+++.++.|+.+
T Consensus 188 ~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~-~~~~-~~~~i~v~GG~~ 263 (301)
T 2vpj_A 188 TNVTP-MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC-YV-GATV-LRGRLYAIAGYD 263 (301)
T ss_dssp EEECC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB-SC-EEEE-ETTEEEEECCBC
T ss_pred EeCCC-CCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc-ce-eEEE-ECCEEEEEcCcC
Confidence 22211 111 1122233466777777653 468999998765322 2222211 11 2222 266777777755
Q ss_pred -----CcEEEEeCCCcc
Q 029743 145 -----SMLKLWDLDDIL 156 (188)
Q Consensus 145 -----~~i~iwd~~~~~ 156 (188)
..+.+||+++..
T Consensus 264 ~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 264 GNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SSSBEEEEEEEETTTTE
T ss_pred CCcccccEEEEcCCCCe
Confidence 357888887643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.006 Score=47.92 Aligned_cols=115 Identities=11% Similarity=-0.003 Sum_probs=69.1
Q ss_pred EEEEEe-CCCEEEEecCCC-----------eEEEEEeCCcc-cccceeeeccCCceeEE-eecCCCEEEEec-CCCeEEE
Q 029743 42 SVVLMK-NGRKVVCGSQSG-----------TVLLYSWGYFK-DCSDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISL 106 (188)
Q Consensus 42 ~~~~~~-~~~~l~~~~~d~-----------~i~~~d~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~ 106 (188)
.+++.+ +++.++.|+.+. .+.+||..+.. ..+..+...+.....++ +.+++++++.|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 788888876542 57888886532 11111211011122233 568899999988 4568999
Q ss_pred EecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe-CC-----CcEEEEeCCCcc
Q 029743 107 VGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HD-----SMLKLWDLDDIL 156 (188)
Q Consensus 107 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~ 156 (188)
||..+.+-...-..+....-.+++..++++.++.|+ .+ ..+.+||..+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 999876543221112111123456667899888888 34 569999987643
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.031 Score=43.72 Aligned_cols=152 Identities=12% Similarity=0.016 Sum_probs=88.6
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCce-eeeecccccceEEEEEEeCCCEE-EEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
|+|++.++.|+.+.. .+.|..+++..... ...+...-.....+++.+.++.| ++-...+.|.+.+++. .....+.
T Consensus 45 ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG--~~~~~l~ 122 (619)
T 3s94_A 45 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLF 122 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEE
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC--CCEEEEE
Confidence 356776666665544 46677777665422 22233222467899999865555 4555678999999863 3333443
Q ss_pred -eccCCceeEE-eecCCCEEEEec--CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeC
Q 029743 78 -GLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (188)
Q Consensus 78 -~~~~~~v~~~-~~~~~~~l~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~ 152 (188)
. .-.....+ +.|.+.+|+... ..+.|...++........+... ......|++++++..|+.+. ..+.|..+++
T Consensus 123 ~~-~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~-~~~P~Glald~~~~~LY~aD~~~~~I~~~~~ 200 (619)
T 3s94_A 123 WQ-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE-IYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 200 (619)
T ss_dssp CS-SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CSSEEEEEEETTTTEEEEEETTTCCEEEESS
T ss_pred eC-CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC-CCCCcEEEEEccCCEEEEEeCCCCeEEEecC
Confidence 3 33445667 678655554443 2467777776533222222222 22578999999777666554 5678999988
Q ss_pred CCcc
Q 029743 153 DDIL 156 (188)
Q Consensus 153 ~~~~ 156 (188)
....
T Consensus 201 dG~~ 204 (619)
T 3s94_A 201 DGTN 204 (619)
T ss_dssp SCCE
T ss_pred CCCc
Confidence 7643
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0041 Score=46.06 Aligned_cols=105 Identities=10% Similarity=-0.001 Sum_probs=69.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCce------------eeeec-c-----cccceEEEEEEeC---CCEEEEecCCCe
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV------------QTRSE-F-----SEEELTSVVLMKN---GRKVVCGSQSGT 60 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~------------~~~~~-~-----~~~~v~~~~~~~~---~~~l~~~~~d~~ 60 (188)
..||+|++||..+. ..|.|..+..+.. .+.+. + ...+|..+.|+|- +..|++-..|+.
T Consensus 72 vlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~ 150 (452)
T 3pbp_A 72 ISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT 150 (452)
T ss_dssp EECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC
T ss_pred EECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE
Confidence 57899999999866 6899988873310 11121 1 2467999999994 468999999999
Q ss_pred EEEEEeCCcc-cccceeeec--------cCCceeEE-eecCCCEEEE--ecCCCeEEEEe
Q 029743 61 VLLYSWGYFK-DCSDRFVGL--------SPNSVDAL-LKLDEDRVIT--GSENGLISLVG 108 (188)
Q Consensus 61 i~~~d~~~~~-~~~~~~~~~--------~~~~v~~~-~~~~~~~l~~--~~~d~~v~~~d 108 (188)
|++||+.... .+. .+... ....+.++ |..++-.|+. .+..|.|+-..
T Consensus 151 Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 151 ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 9999997421 122 22110 11446666 7677666666 44788887554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.02 Score=42.98 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=53.7
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee--eeecc------cccceEEEEEEeC---CCEEEEecC------------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEF------SEEELTSVVLMKN---GRKVVCGSQ------------ 57 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~~~------------ 57 (188)
|+|.|+|+++++--..+.|++++..++... ..+.. ....+..|+|+|+ +..|+.+..
T Consensus 32 ~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~ 111 (454)
T 1cru_A 32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELP 111 (454)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSC
T ss_pred EEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccc
Confidence 578899987776544357888876555432 22221 2356779999995 555544332
Q ss_pred -CCeEEEEEeCCcc----cccceee---eccCCceeEE-eecCCCEEEEec
Q 029743 58 -SGTVLLYSWGYFK----DCSDRFV---GLSPNSVDAL-LKLDEDRVITGS 99 (188)
Q Consensus 58 -d~~i~~~d~~~~~----~~~~~~~---~~~~~~v~~~-~~~~~~~l~~~~ 99 (188)
...|..+++.... .....+. .........+ |.|+|.+.++.+
T Consensus 112 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 112 NQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2356566653211 1111121 1012235666 799998766543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.042 Score=43.07 Aligned_cols=150 Identities=11% Similarity=0.078 Sum_probs=91.5
Q ss_pred CeeecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEE-EEecCCCeEEEEEeCCcccccceee-
Q 029743 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFV- 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~- 77 (188)
|+|++.++.|+.+. .++.|+.+++........+.........+++.+.+..| ++-...+.|.+.+++. .....+.
T Consensus 42 l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG--~~~~~l~~ 119 (628)
T 4a0p_A 42 LDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG--QHRQVLVW 119 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--TTCEEEEC
T ss_pred EEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC--CcEEEEEe
Confidence 35677656665544 45778878776544333333222457789998765555 4545567899999863 3333333
Q ss_pred eccCCceeEE-eecCCCEEEEec--CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCC
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (188)
. .-.....+ +.|...+|+... ..+.|...++........+... . ....|+++++++.|+.+. ..+.|..+++.
T Consensus 120 ~-~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~-~-~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 120 K-DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNV-G-RANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp S-SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSC-S-SEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCC-C-CcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 3 33456677 688555555443 3567888887644332223322 3 578999999877776554 55788888886
Q ss_pred Cc
Q 029743 154 DI 155 (188)
Q Consensus 154 ~~ 155 (188)
..
T Consensus 197 G~ 198 (628)
T 4a0p_A 197 GL 198 (628)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.045 Score=42.88 Aligned_cols=149 Identities=10% Similarity=-0.030 Sum_probs=87.6
Q ss_pred eeecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC--CCeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++.+.++.|+.+. ..+.|.+.++........+...-.....+++.|....|+.+.. .+.|...+++ +.....+..
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~l~~ 163 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTTLVP 163 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEEEEC
Confidence 4555445554443 3567888887654332222233345789999986555555542 4577777765 344444444
Q ss_pred ccCCceeEE-eecCCCEEEEe-cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 79 LSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
.-.....+ ++++++.|+.+ ...+.|..+++..... ..+..... ...++++.. +..+.+-...+.|...|..++.
T Consensus 164 -~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 164 -NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred -CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 44556677 68876666555 4677899999865433 23332223 456788865 3344444457888888866554
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.026 Score=39.57 Aligned_cols=144 Identities=10% Similarity=0.024 Sum_probs=73.3
Q ss_pred ccCeEEEEeCCC-----cEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC-------CeEEEEEeCCccc
Q 029743 6 DAMKLLGTSGDG-----TLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-------GTVLLYSWGYFKD 71 (188)
Q Consensus 6 ~~~~l~~~~~d~-----~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~ 71 (188)
+++.++.|+.++ .+.+||+.+.+-.. .++........+. -+++.++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-- 183 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTN-- 183 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTT--
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCC--
Confidence 456666776543 56788887654322 2221111112222 266677776542 35888887642
Q ss_pred ccceeeec-cCCceeEEeecCCCEEEEecCC-----CeEEEEecccCeee--eecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 72 CSDRFVGL-SPNSVDALLKLDEDRVITGSEN-----GLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 72 ~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d-----~~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
....+... ....-.++...++++++.|+.+ ..+.+||+.+.+-. ..+..... . ..++. .+++.++.|+.
T Consensus 184 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~-~~~~~-~~~~i~v~GG~ 260 (302)
T 2xn4_A 184 EWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR-N-AGVCA-VNGLLYVVGGD 260 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB-S-CEEEE-ETTEEEEECCB
T ss_pred cEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc-c-CeEEE-ECCEEEEECCc
Confidence 11211110 1111122233467777777654 46889998876532 22221111 1 12222 26677777775
Q ss_pred C-----CcEEEEeCCCcc
Q 029743 144 D-----SMLKLWDLDDIL 156 (188)
Q Consensus 144 d-----~~i~iwd~~~~~ 156 (188)
+ ..+.+||+.+..
T Consensus 261 ~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 261 DGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CSSSBCCCEEEEETTTTE
T ss_pred CCCcccccEEEEcCCCCe
Confidence 4 348899987654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.025 Score=39.73 Aligned_cols=144 Identities=9% Similarity=0.090 Sum_probs=74.4
Q ss_pred ccCeEEEEeCC----CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC------CeEEEEEeCCccccc
Q 029743 6 DAMKLLGTSGD----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCS 73 (188)
Q Consensus 6 ~~~~l~~~~~d----~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~ 73 (188)
+++.++.|+.+ ..+.+||+.+++-.. .++........+ .-+++.++.|+.+ ..+.+||..+. ..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~--~W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRTE--SW 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTTT--EE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCCC--ce
Confidence 45666777654 567888988764322 222111112222 2367777777765 45888887642 12
Q ss_pred ceeeec-cCCceeEEeecCCCEEEEecC---------CCeEEEEecccCeee--eecccCCCcceeEEEeeCCCCEEEEE
Q 029743 74 DRFVGL-SPNSVDALLKLDEDRVITGSE---------NGLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 74 ~~~~~~-~~~~v~~~~~~~~~~l~~~~~---------d~~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
..+... ....-.++...++++++.|+. ...+.+||+.+.+-. ..+..... -.+++.. +++.++.|
T Consensus 131 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~G 207 (306)
T 3ii7_A 131 HTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK--NHGLVFV-KDKIFAVG 207 (306)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB--SCEEEEE-TTEEEEEC
T ss_pred EeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh--cceEEEE-CCEEEEEe
Confidence 222110 011111222346666666653 345889998876532 22221111 1122222 56677776
Q ss_pred eCC-----CcEEEEeCCCcc
Q 029743 142 SHD-----SMLKLWDLDDIL 156 (188)
Q Consensus 142 ~~d-----~~i~iwd~~~~~ 156 (188)
+.+ ..+.+||+.+..
T Consensus 208 G~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 208 GQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp CEETTEEBCCEEEEETTTTE
T ss_pred CCCCCCCCceEEEeeCCCCc
Confidence 643 468899987753
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.02 Score=41.49 Aligned_cols=136 Identities=13% Similarity=0.034 Sum_probs=70.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeee---e----cccccceEEEEEEeC---CCEEEEec-C-------CCeEE
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR---S----EFSEEELTSVVLMKN---GRKVVCGS-Q-------SGTVL 62 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~~~~-~-------d~~i~ 62 (188)
|+|.|+|+.|+++...+.|++++.. +..... + .........++++|+ +..|+.+. . ...|.
T Consensus 23 i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~ 101 (353)
T 2g8s_A 23 LAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVG 101 (353)
T ss_dssp EEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEE
T ss_pred EEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEE
Confidence 5789999845555677999999853 332111 1 112345689999995 44444432 2 23566
Q ss_pred EEEeCCccc---ccce-eeec-----cCCceeEE-eecCCCEEEEecC-------------CCeEEEEecccCe------
Q 029743 63 LYSWGYFKD---CSDR-FVGL-----SPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPNR------ 113 (188)
Q Consensus 63 ~~d~~~~~~---~~~~-~~~~-----~~~~v~~~-~~~~~~~l~~~~~-------------d~~v~~~d~~~~~------ 113 (188)
.+++..... ..+. +... .......+ |.|+|.+.++.+. .|.|.-++....-
T Consensus 102 r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf 181 (353)
T 2g8s_A 102 YGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPF 181 (353)
T ss_dssp EEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTT
T ss_pred EEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCC
Confidence 666643211 1111 1110 01113456 7999965555432 2466666654320
Q ss_pred ------eeeec-ccCCCcceeEEEeeC-CCCEEE
Q 029743 114 ------IIQPI-AEHSEYPIESLALSH-DRKFLG 139 (188)
Q Consensus 114 ------~~~~~-~~~~~~~v~~~~~~~-~~~~l~ 139 (188)
....+ .++ . ....++|+| ++++++
T Consensus 182 ~~~~~~~~~i~a~G~-r-np~gl~~d~~~g~l~~ 213 (353)
T 2g8s_A 182 IKESGVRAEIWSYGI-R-NPQGMAMNPWSNALWL 213 (353)
T ss_dssp TTSTTSCTTEEEECC-S-EEEEEEEETTTTEEEE
T ss_pred cCCCCCCccEEEEcC-c-CccceEEECCCCCEEE
Confidence 11111 233 2 478899999 555444
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.036 Score=38.90 Aligned_cols=143 Identities=11% Similarity=0.090 Sum_probs=74.3
Q ss_pred ccCeEEEEeCC------CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecC---------CCeEEEEEeCC
Q 029743 6 DAMKLLGTSGD------GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGY 68 (188)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~ 68 (188)
+++.++.|+.+ ..+.+||+.+.+-.. .++........+ .-+++.++.|+. -..+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV--EANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE--EECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 55666777654 468889988764322 222111111222 236667777654 34588888864
Q ss_pred cccccceeeeccCC--ceeEEeecCCCEEEEecCC-----CeEEEEecccCee--eeecccCCCcceeEEEeeCCCCEEE
Q 029743 69 FKDCSDRFVGLSPN--SVDALLKLDEDRVITGSEN-----GLISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 69 ~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d-----~~v~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
. ....+.. ... .-.++..-++++++.|+.+ ..+.+||+.+.+- +..+..... ....+.+ +++.++
T Consensus 179 ~--~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~--~~~i~v 252 (306)
T 3ii7_A 179 E--TWTELCP-MIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV-TVKCAAV--GSIVYV 252 (306)
T ss_dssp T--EEEEECC-CSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS-CCEEEEE--TTEEEE
T ss_pred C--eEEECCC-ccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc-ceeEEEE--CCEEEE
Confidence 2 2222221 111 1112223366677777643 4588999887653 222222111 1222222 667777
Q ss_pred EEeCC-----CcEEEEeCCCcc
Q 029743 140 SISHD-----SMLKLWDLDDIL 156 (188)
Q Consensus 140 ~~~~d-----~~i~iwd~~~~~ 156 (188)
.|+.+ ..+.+||+.+..
T Consensus 253 ~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 253 LAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EECBCSSSBCCEEEEEETTTTE
T ss_pred EeCcCCCeeeeeEEEEcCCCCe
Confidence 77743 568889987753
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.04 Score=39.30 Aligned_cols=144 Identities=9% Similarity=0.032 Sum_probs=76.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeee-cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee--
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-- 78 (188)
++.|++++++.+. .+.++.-.-..+..-..+ ......+..+.+.++++.++ ++.+|.+++.+.+ .+.....+..
T Consensus 169 ~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D-~G~tW~~~~~~~ 245 (327)
T 2xbg_A 169 NRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPD-NSENWGELLSPL 245 (327)
T ss_dssp EECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETT-EEEEECCCBCTT
T ss_pred EEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCC-CCCeeEeccCCc
Confidence 4567776666554 455444321112211111 23456788899988887654 4456777766422 1222222221
Q ss_pred -ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc---cCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 79 -LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA---EHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 79 -~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
.....+..+ +.+++..++++. ++.| ++..+.++.-..+. .... .++.+.|.+++. ++.++.+|.|.-++-
T Consensus 246 ~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~-~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 246 RRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPS-NFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSS-CCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred ccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCC-CeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 012246667 667777666655 5656 34444444333332 1122 578888875554 556677888777664
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.082 Score=42.34 Aligned_cols=140 Identities=13% Similarity=0.031 Sum_probs=81.2
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeec--ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc-----CC
Q 029743 10 LLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS-----PN 82 (188)
Q Consensus 10 l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----~~ 82 (188)
|-.|+.++-|..++..+++...... .....|.++...+++++.+ ++. +-+..++... +. ...+.... ..
T Consensus 420 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~-~~-~~~~~~~~~~~~~~~ 495 (781)
T 3v9f_A 420 LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLAS-KK-VIHHYDTSNSQLLEN 495 (781)
T ss_dssp EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSS-SS-CCEEECTTTSSCSCS
T ss_pred EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCC-Ce-EEecccCcccccccc
Confidence 4445655668888877665433221 1345688888877776444 444 4688888764 22 22222101 34
Q ss_pred ceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc---cCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA---EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
.+.++ ..++|.+.+.....| |..++..+++.. .+. +.....|.++...++|...++. ..|.|..||..+..
T Consensus 496 ~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 496 FVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD 570 (781)
T ss_dssp CEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred eeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence 57777 467776555443344 777887665433 222 1112268889888888766544 45654888876543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.041 Score=38.48 Aligned_cols=143 Identities=8% Similarity=-0.015 Sum_probs=75.1
Q ss_pred ccCeEEEEeCC-----CcEEEEEcCCCc---e--eeeecccccceEEEEEEeCCCEEEEecCC-----CeEEEEEeCCcc
Q 029743 6 DAMKLLGTSGD-----GTLSVCNLRKNT---V--QTRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFK 70 (188)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~~~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~ 70 (188)
+++.++.|+.+ ..+.+||+.+.+ - +..++........+. .+++.++.|+.+ ..+.+||..+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~- 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNID- 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT-
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCC-
Confidence 45666777654 468899987765 2 222222112222222 267777777654 36888887642
Q ss_pred cccceeeeccCC--ceeEEeecCCCEEEEecCC-----CeEEEEecccCeeee--ecccCCCcceeEEEeeCCCCEEEEE
Q 029743 71 DCSDRFVGLSPN--SVDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 71 ~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d-----~~v~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
....+.. ... .-.++...+++.++.|+.+ ..+.+||+.+.+-.. .+..... . .+++. .+++.++.|
T Consensus 139 -~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~-~~~~~-~~~~i~v~G 213 (301)
T 2vpj_A 139 -QWSMLGD-MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-G-AGVAL-LNDHIYVVG 213 (301)
T ss_dssp -EEEEEEE-CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-S-CEEEE-ETTEEEEEC
T ss_pred -eEEECCC-CCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-c-ceEEE-ECCEEEEEe
Confidence 2222221 111 1122223467777777654 458899987765332 2222111 1 12222 256677777
Q ss_pred eCC-----CcEEEEeCCCcc
Q 029743 142 SHD-----SMLKLWDLDDIL 156 (188)
Q Consensus 142 ~~d-----~~i~iwd~~~~~ 156 (188)
+.+ ..+.+||+.+..
T Consensus 214 G~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCcccceEEEEeCCCCc
Confidence 653 468999987654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.037 Score=39.10 Aligned_cols=144 Identities=9% Similarity=0.012 Sum_probs=72.2
Q ss_pred ccCeEEEEeCC--------CcEEEEEcCCCcee--eeecccccceEEEEEEeCCCEEEEecC-C-----CeEEEEEeCCc
Q 029743 6 DAMKLLGTSGD--------GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQ-S-----GTVLLYSWGYF 69 (188)
Q Consensus 6 ~~~~l~~~~~d--------~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~~~d~~~~ 69 (188)
+++.++.|+.+ ..+.+||+.+.+-. ..++...... ++ ..-+++.++.|+. + ..+.+||..+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TV-LSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EE-EEETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eE-EEECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 45556666532 45888898775422 2222111111 22 2246677777776 2 46888887642
Q ss_pred ccccceeeec-cCCceeEEeecCCCEEEEecCCC-----eEEEEecccCeee--eecccCCCcceeEEEeeCCCCEEEEE
Q 029743 70 KDCSDRFVGL-SPNSVDALLKLDEDRVITGSENG-----LISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 70 ~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d~-----~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
....+... ....-.++..-++++++.|+.++ .+.+||+.+.+-. ..+..... . .+++.. +++.++.|
T Consensus 176 --~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~-~~~~~~-~~~l~v~G 250 (315)
T 4asc_A 176 --EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS-S-LSLVSL-VGTLYAIG 250 (315)
T ss_dssp --EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB-S-CEEEEE-TTEEEEEE
T ss_pred --eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc-c-eeEEEE-CCEEEEEC
Confidence 11111110 11111122233667777776543 5888998776532 22222211 1 122222 56677777
Q ss_pred eCC--------------CcEEEEeCCCcc
Q 029743 142 SHD--------------SMLKLWDLDDIL 156 (188)
Q Consensus 142 ~~d--------------~~i~iwd~~~~~ 156 (188)
+.+ ..+.+||+++..
T Consensus 251 G~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 251 GFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred CccccCcCCccccccccCcEEEecCCCCh
Confidence 653 247788887653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.052 Score=38.21 Aligned_cols=144 Identities=9% Similarity=0.002 Sum_probs=73.1
Q ss_pred ccCeEEEEeCC-----CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC-----CeEEEEEeCCccccc
Q 029743 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCS 73 (188)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~ 73 (188)
+++.++.|+.+ ..+.+||+.+.+-.. .++........+.+ +++.++.|+.+ ..+.+||+.+. ..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN--EW 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC--eE
Confidence 45566666532 467888887654322 22211112222222 66777777654 45888887642 11
Q ss_pred ceeeec-cCCceeEEeecCCCEEEEecCC-----CeEEEEecccCeeee--ecccCCCcceeEEEeeCCCCEEEEEeCC-
Q 029743 74 DRFVGL-SPNSVDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSISHD- 144 (188)
Q Consensus 74 ~~~~~~-~~~~v~~~~~~~~~~l~~~~~d-----~~v~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 144 (188)
..+... ....-.++..-++++++.|+.+ ..+.+||+.+.+-.. .+..... -.+++.. +++.++.|+.+
T Consensus 197 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~ 273 (308)
T 1zgk_A 197 RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS--ALGITVH-QGRIYVLGGYDG 273 (308)
T ss_dssp EECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB--SCEEEEE-TTEEEEECCBCS
T ss_pred eeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc--ceEEEEE-CCEEEEEcCcCC
Confidence 111110 1111112223366777777654 568999988765332 2222111 1122222 56777777643
Q ss_pred ----CcEEEEeCCCcc
Q 029743 145 ----SMLKLWDLDDIL 156 (188)
Q Consensus 145 ----~~i~iwd~~~~~ 156 (188)
..+.+||+.+..
T Consensus 274 ~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 274 HTFLDSVECYDPDTDT 289 (308)
T ss_dssp SCBCCEEEEEETTTTE
T ss_pred CcccceEEEEcCCCCE
Confidence 457888887643
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.066 Score=37.68 Aligned_cols=144 Identities=10% Similarity=0.016 Sum_probs=72.9
Q ss_pred ccCeEEEEeC----C-----CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC-----CeEEEEEeCCc
Q 029743 6 DAMKLLGTSG----D-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYF 69 (188)
Q Consensus 6 ~~~~l~~~~~----d-----~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~ 69 (188)
+++.++.|+. + ..+.+||+.+.+-.. .++........+. -+++.++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4555666654 2 467888887764322 2221112222222 267777777643 35788887642
Q ss_pred c-cccceeeeccCCceeEEeecCCCEEEEecCC-----CeEEEEecccCeee--eecccCCCcceeEEEeeCCCCEEEEE
Q 029743 70 K-DCSDRFVGLSPNSVDALLKLDEDRVITGSEN-----GLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 70 ~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
. ..+..+.. .... .++..-++++++.|+.+ ..+.+||+.+.+-. ..+..... . .+++.. +++.++.|
T Consensus 148 ~W~~~~~~p~-~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~-~~~~~~-~~~iyv~G 222 (308)
T 1zgk_A 148 EWHLVAPMLT-RRIG-VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-G-AGVCVL-HNCIYAAG 222 (308)
T ss_dssp EEEECCCCSS-CCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-S-CEEEEE-TTEEEEEC
T ss_pred eEeECCCCCc-cccc-eEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-c-ceEEEE-CCEEEEEe
Confidence 1 11111111 1111 12222366777777643 45889998766532 22222111 1 122222 66677777
Q ss_pred eCC-----CcEEEEeCCCcc
Q 029743 142 SHD-----SMLKLWDLDDIL 156 (188)
Q Consensus 142 ~~d-----~~i~iwd~~~~~ 156 (188)
+.+ ..+.+||+.+..
T Consensus 223 G~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 223 GYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp CBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCCccceEEEEeCCCCc
Confidence 654 568999987654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.065 Score=37.49 Aligned_cols=143 Identities=11% Similarity=0.032 Sum_probs=72.9
Q ss_pred ccCeEEEEeCC-----CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCCC-----eEEEEEeCCccccc
Q 029743 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (188)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~ 73 (188)
+++.++.|+.+ ..+.+||..+.+-.. .++........+. -+++.++.|+.++ .+.+||+.+. ..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSN--EW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTT--EE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCC--eE
Confidence 45566666643 357888887754322 2221111222222 2677777777553 5777777542 22
Q ss_pred ceeeeccCC--ceeEEeecCCCEEEEecC-------CCeEEEEecccCeee--eecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 74 DRFVGLSPN--SVDALLKLDEDRVITGSE-------NGLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 74 ~~~~~~~~~--~v~~~~~~~~~~l~~~~~-------d~~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
..+.. ... .-.++...+++.++.|+. ...+.+||+.+.+-. ..+..... . .+++.. +++.++.|+
T Consensus 137 ~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~-~~~~~~-~~~iyv~GG 212 (302)
T 2xn4_A 137 FHVAP-MNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-G-AGVGVL-NNLLYAVGG 212 (302)
T ss_dssp EEECC-CSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB-S-CEEEEE-TTEEEEECC
T ss_pred eecCC-CCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc-c-ccEEEE-CCEEEEECC
Confidence 22211 111 111222346667777654 245889998876532 22222211 1 122222 567777776
Q ss_pred CC-----CcEEEEeCCCcc
Q 029743 143 HD-----SMLKLWDLDDIL 156 (188)
Q Consensus 143 ~d-----~~i~iwd~~~~~ 156 (188)
.+ ..+.+||+.+..
T Consensus 213 ~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 213 HDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp BSSSSBCCCEEEEETTTTE
T ss_pred CCCCcccceEEEEeCCCCC
Confidence 54 468899987643
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.066 Score=37.84 Aligned_cols=143 Identities=11% Similarity=0.033 Sum_probs=70.5
Q ss_pred ccCeEEEEeCC-------CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecC------CCeEEEEEeCCcc
Q 029743 6 DAMKLLGTSGD-------GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFK 70 (188)
Q Consensus 6 ~~~~l~~~~~d-------~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~ 70 (188)
+++.++.|+.+ ..+.+||+.+.+-.. .++...... +++ ..+++.++.|+. -..+.+||+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~- 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKG- 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEE-EETTEEEEECCEESSSCBCCCEEEEETTTT-
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEE-EECCEEEEEcCCCCCCCccceEEEEcCCCC-
Confidence 45566666643 347788887654322 122111111 222 246777777764 235888888642
Q ss_pred cccceeeeccCC--ceeEEeecCCCEEEEecCC-----CeEEEEecccCeee--eecccCCCcceeEEEeeCCCCEEEEE
Q 029743 71 DCSDRFVGLSPN--SVDALLKLDEDRVITGSEN-----GLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 71 ~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d-----~~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
....+.. ... .-.++..-+++.++.|+.+ ..+.+||+.+.+-. ..+..... -.+++. .+++.++.|
T Consensus 186 -~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~-~~~~i~v~G 260 (318)
T 2woz_A 186 -DWKDLAP-MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERS--SISLVS-LAGSLYAIG 260 (318)
T ss_dssp -EEEEECC-CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCB--SCEEEE-ETTEEEEEC
T ss_pred -EEEECCC-CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCccc--ceEEEE-ECCEEEEEC
Confidence 2222211 111 1112223366777777643 35778998765432 22222211 112222 256666776
Q ss_pred eCC--------------CcEEEEeCCCcc
Q 029743 142 SHD--------------SMLKLWDLDDIL 156 (188)
Q Consensus 142 ~~d--------------~~i~iwd~~~~~ 156 (188)
+.+ ..+.+||+.+..
T Consensus 261 G~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 261 GFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp CBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred CeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 643 357788887643
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.04 Score=37.17 Aligned_cols=131 Identities=8% Similarity=-0.028 Sum_probs=72.1
Q ss_pred cCeEEEEeCCCcEEEEEcCCCce------eeeeccc--ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTV------QTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~------~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
...|+....| ++++=....+.. ...+ +. =..+..++|+|+|.+.++ .++.+.-.+..+ ..-..+.+
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t--~~~~~W~~ 77 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPT--HDNDNWMG 77 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCC--STTCCHHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCC--CCcccccc
Confidence 4456666676 666554444331 1111 22 246789999999886666 667655444322 11111111
Q ss_pred ccCCc--------eeEE-eecCCCEEEEecCCCeEEEEecccCee-e-----eecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 79 LSPNS--------VDAL-LKLDEDRVITGSENGLISLVGILPNRI-I-----QPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 79 ~~~~~--------v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~-~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
.... -.++ |.|+|.+.++ .||.|+-++..+... . ..+-...-..+..|.|.|+|.+.+..
T Consensus 78 -s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-- 152 (236)
T 1tl2_A 78 -RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-- 152 (236)
T ss_dssp -HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--
T ss_pred -cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--
Confidence 1111 3566 6899988777 558888777533111 0 11111111257899999999776655
Q ss_pred CCcEE
Q 029743 144 DSMLK 148 (188)
Q Consensus 144 d~~i~ 148 (188)
|+.++
T Consensus 153 dg~ly 157 (236)
T 1tl2_A 153 GQQFY 157 (236)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 77644
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.11 Score=36.54 Aligned_cols=144 Identities=8% Similarity=0.006 Sum_probs=72.0
Q ss_pred ccCeEEEEeC-----C------CcEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC--------CeEEEE
Q 029743 6 DAMKLLGTSG-----D------GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS--------GTVLLY 64 (188)
Q Consensus 6 ~~~~l~~~~~-----d------~~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~ 64 (188)
+++.++.|+. . ..+.+||..+++-.. .++...... +++. -+++.++.|+.+ ..+.+|
T Consensus 45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~ 122 (315)
T 4asc_A 45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGE-ALNSIYVVGGREIKDGERCLDSVMCY 122 (315)
T ss_dssp TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEE-ETTEEEEECCEESSTTCCBCCCEEEE
T ss_pred CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEE-ECCEEEEEeCCcCCCCCcccceEEEE
Confidence 5667777763 1 126778887764322 122111111 2222 266677777632 358888
Q ss_pred EeCCcccccceeeec-cCCceeEEeecCCCEEEEecC------CCeEEEEecccCeee--eecccCCCcceeEEEeeCCC
Q 029743 65 SWGYFKDCSDRFVGL-SPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRII--QPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 65 d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~------d~~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~ 135 (188)
|..+. ....+... ....-.++...+++.++.|+. -..+.+||+.+.+-. ..+..... -.+++. -++
T Consensus 123 d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~-~~~ 197 (315)
T 4asc_A 123 DRLSF--KWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS--LFGATV-HDG 197 (315)
T ss_dssp ETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB--SCEEEE-ETT
T ss_pred CCCCC--cEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh--ceEEEE-ECC
Confidence 87642 11111110 111112223456667777765 246889998876532 22222111 112222 266
Q ss_pred CEEEEEeCCC-----cEEEEeCCCcc
Q 029743 136 KFLGSISHDS-----MLKLWDLDDIL 156 (188)
Q Consensus 136 ~~l~~~~~d~-----~i~iwd~~~~~ 156 (188)
+.++.|+.++ .+.+||+.+..
T Consensus 198 ~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 198 RIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEEEeccCCCCccceEEEEECCCCe
Confidence 7777777543 58889987653
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.12 Score=36.77 Aligned_cols=109 Identities=8% Similarity=-0.024 Sum_probs=60.6
Q ss_pred ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee-eccCCceeEE-eecCCCEEEEecCCCeEEEEecccC
Q 029743 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (188)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~ 112 (188)
.+...+..+++.+++..++.+...+..+-.|- .+...+.+. . ....+..+ +.++++.++. +.+|.+++.....+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~~~-~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHNRT-TSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNS 235 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEECC-SSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECCCC-CCCccceeEECCCCCEEEE-eCCceEEEecCCCC
Confidence 34557889999998887776654433333332 122222222 2 33456666 5788776544 45677776643324
Q ss_pred eeeeecccC---CCcceeEEEeeCCCCEEEEEeCCCcEE
Q 029743 113 RIIQPIAEH---SEYPIESLALSHDRKFLGSISHDSMLK 148 (188)
Q Consensus 113 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~ 148 (188)
+.-..+... ....+..+++.+++..++++ .++.|.
T Consensus 236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~ 273 (327)
T 2xbg_A 236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL 273 (327)
T ss_dssp EEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE
T ss_pred CeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE
Confidence 432222211 11247889998877766655 466663
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.25 Score=39.56 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=79.6
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeee---cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee--ccCCc
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG--LSPNS 83 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~ 83 (188)
.|-.|+.++-|..++..++...... ......|.++...+++++. .|+.++-+..++..+. ....+.. .....
T Consensus 375 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~ 451 (781)
T 3v9f_A 375 KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLK--KFQIIELEKNELLD 451 (781)
T ss_dssp CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSC--EEEECCSTTTCCCC
T ss_pred CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCC--cEEEeccCCCCCCe
Confidence 3445555566888887654332211 1123568888887766654 4666566888876532 2222221 02346
Q ss_pred eeEEe-ecCCCEEEEecCCCeEEEEecccCeeeeecccC----CCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 84 VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEH----SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 84 v~~~~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
+.+++ .++|.+ ..|+. +-|..++..+++........ ....|.++...++|...+ ++.++-|..||..+.
T Consensus 452 v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 452 VRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ 525 (781)
T ss_dssp EEEEEECTTSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCC
T ss_pred EEEEEECCCCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC
Confidence 77774 556654 44455 45888998766543221111 012688998888887655 444444777887654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.097 Score=40.34 Aligned_cols=103 Identities=13% Similarity=0.042 Sum_probs=64.8
Q ss_pred ccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCccc--------c----cceeeeccCCceeEEeecCCCEEEEecCCCe
Q 029743 37 EEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD--------C----SDRFVGLSPNSVDALLKLDEDRVITGSENGL 103 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~--------~----~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~ 103 (188)
......+..+|||+++++++. +.++.++|+..... . ...... ..++....|.++|.-..+.-.|..
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecce
Confidence 345678899999999887654 67899999863111 0 111122 234555558899955556668999
Q ss_pred EEEEecccC----------eeeeecccCCCcceeEEEe------eCCCCEEEEEe
Q 029743 104 ISLVGILPN----------RIIQPIAEHSEYPIESLAL------SHDRKFLGSIS 142 (188)
Q Consensus 104 v~~~d~~~~----------~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~ 142 (188)
|.-|++... ..+..+..|. ++-.+.- .++|++|++..
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Y--qpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHY--QPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSS--CEEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEEeccHHHHHhcCccCCeeeecccccc--CCcccccCCCccCCCCccEEEEec
Confidence 999999753 3444455553 3333433 45777777664
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.15 Score=36.84 Aligned_cols=101 Identities=14% Similarity=0.074 Sum_probs=57.0
Q ss_pred cceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc-cccee---eeccCCceeEE-eecC---CCEEEEecC----C----
Q 029743 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRF---VGLSPNSVDAL-LKLD---EDRVITGSE----N---- 101 (188)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~---~~~~~~~v~~~-~~~~---~~~l~~~~~----d---- 101 (188)
.....++|.|+|+++++ ..++.|++++.. +. .+..+ .. .......+ ++|+ +..|+++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~--G~~~~~~~~v~~~-g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISPS--GKKLVASFDVANV-GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECSS--CEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeCC--CceEeeccceeec-CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 45789999999985555 555889888732 22 11111 11 12345666 7887 455554432 2
Q ss_pred CeEEEEecccC-------eee-eecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 102 GLISLVGILPN-------RII-QPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 102 ~~v~~~d~~~~-------~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+.|..++.... +.+ ..+..........|+|.|||.++++.+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 56777776543 111 112211111346799999998666643
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.19 Score=36.22 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=57.8
Q ss_pred cceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccce---eeeccCCceeEE-eecC---CCEEEEecC-C-----CeE
Q 029743 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR---FVGLSPNSVDAL-LKLD---EDRVITGSE-N-----GLI 104 (188)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~v~~~-~~~~---~~~l~~~~~-d-----~~v 104 (188)
.....++|.|+|+++++ ...+.|++++ ......+.. ... .......+ ++|+ +..|+++.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~-g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHR-GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeec-CCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 35689999999986555 4568999988 321111111 111 23345667 7887 555555443 2 567
Q ss_pred EEEecccCe-----ee-eeccc--CCCcceeEEEeeCCCCEEEEEe
Q 029743 105 SLVGILPNR-----II-QPIAE--HSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 105 ~~~d~~~~~-----~~-~~~~~--~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
..++...+. .+ ..+.. ........++|.|+|..+++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 778776431 11 11321 1111346899999997666543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.015 Score=41.95 Aligned_cols=113 Identities=13% Similarity=0.143 Sum_probs=69.4
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeeccc-ccceEEEEEE--e-CCCEEEEe-cCCCeEEEEEeCCcccccceeee---
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLM--K-NGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG--- 78 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~--- 78 (188)
+.+++.++.||.|+-+|..+|+.+..++.. ..++....-. + ++..++.. ..||.+..++...+ .....+.-
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G-~~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG-LQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE-EEEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC-cEEeeeccccc
Confidence 347889999999999999999998888743 1222221100 1 22333343 57899988887653 22222211
Q ss_pred ccCCceeEE----e-e----cCCCEEEEecCCCeEEEEecccCeeeeeccc
Q 029743 79 LSPNSVDAL----L-K----LDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (188)
Q Consensus 79 ~~~~~v~~~----~-~----~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~ 120 (188)
....++..- . . ..+..+++|+.++.+...|+++|+.+.++..
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 001111110 0 0 1466888999999999999999998887754
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.21 Score=35.36 Aligned_cols=137 Identities=9% Similarity=0.069 Sum_probs=78.3
Q ss_pred eecccCeEEEEeC--CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC--------------CeEEEEEe
Q 029743 3 FAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--------------GTVLLYSW 66 (188)
Q Consensus 3 ~s~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~~~d~ 66 (188)
|++++.+|+.... ++.|+..+....... .+... . +--+++++.+|+.+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCE-EEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCE-EccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 5667788877642 567777776544433 33321 2 33468899988876553 24555555
Q ss_pred CCcccccceeeeccCCceeEEeecCCCEEEEec----CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 67 GYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS----ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~----~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+ +.....+.. .. ...++++++.|+-.. ....|+..++.. .....+..+ . + .+++++++.|+-.+
T Consensus 96 d--g~~~~~l~~-~~---~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~-~--~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 96 N--GHGSTVLDP-DP---CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNH-Y--L--FTCNTSDRYFYYNN 163 (302)
T ss_dssp T--SCCCEEEEC-SC---EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESS-C--C--CCSEEETTEEEEEC
T ss_pred C--CCcceEeec-CC---ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCC-C--c--eEeeEECCEEEEEe
Confidence 4 333333433 21 123688888887665 344566666653 333444433 1 2 35677888887555
Q ss_pred C-CCcEEEEeCCCcc
Q 029743 143 H-DSMLKLWDLDDIL 156 (188)
Q Consensus 143 ~-d~~i~iwd~~~~~ 156 (188)
. ...|.+-++....
T Consensus 164 ~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 164 PKNGQLYRYDTASQS 178 (302)
T ss_dssp TTTCCEEEEETTTTE
T ss_pred CCCceEEEEECCCCC
Confidence 4 5677777776544
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.28 Score=36.79 Aligned_cols=152 Identities=13% Similarity=0.043 Sum_probs=92.2
Q ss_pred eecccCeEEEEeC-------CCcEEEEEcCCCceeeeecccccceEEEEEEeCC---CEEEEecC---CCeEEEEEeCCc
Q 029743 3 FAADAMKLLGTSG-------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG---RKVVCGSQ---SGTVLLYSWGYF 69 (188)
Q Consensus 3 ~s~~~~~l~~~~~-------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---d~~i~~~d~~~~ 69 (188)
.+++.++++..+- .|.+.+|..+.+. -+.+.+|......+....+. ..++.+.. .+.+++.++...
T Consensus 158 ~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~ 236 (494)
T 1bpo_A 158 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (494)
T ss_dssp ECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCC
T ss_pred ECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 4667788764432 3677888877554 35667776554444332111 23333433 278999998643
Q ss_pred --cc-ccc--e---eee--ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE
Q 029743 70 --KD-CSD--R---FVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 70 --~~-~~~--~---~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
+. ... . +.. ......-++ .++....++..+.-|.|++||+.++.++..-+-..+ +|..-+-+....-+
T Consensus 237 ~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi 315 (494)
T 1bpo_A 237 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGI 315 (494)
T ss_dssp CTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEE
T ss_pred ccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC-ceEEecccCCCCcE
Confidence 11 110 0 111 012223344 678788888999999999999999998876655444 67666666655556
Q ss_pred EEEeCCCcEEEEeCCCcc
Q 029743 139 GSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~ 156 (188)
+.....|.|.--.++...
T Consensus 316 ~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 316 IGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEETTCEEEEEEECTTT
T ss_pred EEEccCceEEEEEEcccc
Confidence 666678887777666543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.24 Score=34.91 Aligned_cols=143 Identities=8% Similarity=-0.039 Sum_probs=70.4
Q ss_pred ccCeEEEEeC----CC-------cEEEEEcCCCceee--eecccccceEEEEEEeCCCEEEEecCC-------CeEEEEE
Q 029743 6 DAMKLLGTSG----DG-------TLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-------GTVLLYS 65 (188)
Q Consensus 6 ~~~~l~~~~~----d~-------~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~~d 65 (188)
+++.++.|+. ++ .+.+||..+.+-.. .++........+. -+++.++.|+.+ ..+.+||
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd 133 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGE--VDDKIYVVAGKDLQTEASLDSVLCYD 133 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEE--ETTEEEEEEEEBTTTCCEEEEEEEEE
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEE--ECCEEEEEcCccCCCCcccceEEEEe
Confidence 5666777763 11 16778877654322 1221111112222 266777777653 2477777
Q ss_pred eCCcccccceeeeccCCc--eeEEeecCCCEEEEecC------CCeEEEEecccCeee--eecccCCCcceeEEEeeCCC
Q 029743 66 WGYFKDCSDRFVGLSPNS--VDALLKLDEDRVITGSE------NGLISLVGILPNRII--QPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~------d~~v~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~ 135 (188)
..+. ....+.. ...+ -.++...++++++.|+. ...+.+||+.+.+-. ..+..... -.+++.. ++
T Consensus 134 ~~~~--~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~~-~~ 207 (318)
T 2woz_A 134 PVAA--KWSEVKN-LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS--MFGVAIH-KG 207 (318)
T ss_dssp TTTT--EEEEECC-CSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB--SCEEEEE-TT
T ss_pred CCCC--CEeECCC-CCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc--cceEEEE-CC
Confidence 7542 2222211 1111 11222356677777763 245899998876532 22222111 1122222 56
Q ss_pred CEEEEEeCC-----CcEEEEeCCCcc
Q 029743 136 KFLGSISHD-----SMLKLWDLDDIL 156 (188)
Q Consensus 136 ~~l~~~~~d-----~~i~iwd~~~~~ 156 (188)
+.++.|+.+ ..+.+||+.+..
T Consensus 208 ~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 208 KIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEEEcCcCCCCccceEEEEECCCCe
Confidence 677777643 357789987654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.32 Score=34.83 Aligned_cols=137 Identities=8% Similarity=-0.023 Sum_probs=63.0
Q ss_pred CcEEEEEcCCCcee--eeecccccceEEEEEEeCCCEEEEecC------CCeEEEEEeCCcccccceeeec--cCCc-ee
Q 029743 17 GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDCSDRFVGL--SPNS-VD 85 (188)
Q Consensus 17 ~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~--~~~~-v~ 85 (188)
..+.+||+.+.+-. ..++.....-.+++. -++++++.|+. ...+..||++........+... .... -.
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 56888998775432 222211111022222 25666677654 2357778763211222222110 1111 11
Q ss_pred EEeecCCCEEEEecCC----------------------CeEEEEecccCe--eeeecccCCCcceeEEEeeCCCCEEEEE
Q 029743 86 ALLKLDEDRVITGSEN----------------------GLISLVGILPNR--IIQPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 86 ~~~~~~~~~l~~~~~d----------------------~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
++...++++++.|+.+ ..+.+||+.+.+ .+..+..... ...+...+++.++.|
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~---~~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA---YGVSLPWNNSLLIIG 323 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB---SSEEEEETTEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc---cceeEEeCCEEEEEe
Confidence 2334566777777632 247789987654 3333332211 122233467777888
Q ss_pred eCCC------cEEEEeCCCccC
Q 029743 142 SHDS------MLKLWDLDDILK 157 (188)
Q Consensus 142 ~~d~------~i~iwd~~~~~~ 157 (188)
+.++ .|.++++++.+.
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSC
T ss_pred eeCCCCCEeeeEEEEEEcCcEe
Confidence 7542 355567776553
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.33 Score=34.77 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=26.9
Q ss_pred ccCeEEEEeC----------CCcEEEEEcCCCceeeeeccc-ccceEEEEEEeCCCEEEEecCC
Q 029743 6 DAMKLLGTSG----------DGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQS 58 (188)
Q Consensus 6 ~~~~l~~~~~----------d~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 58 (188)
++++++.|+. ...+.+||+.+.+-...-... .......+...++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 4556666655 146888888775422211111 1111121222577777887754
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.48 E-value=1 Score=38.15 Aligned_cols=146 Identities=10% Similarity=0.092 Sum_probs=81.8
Q ss_pred eecccCeEEEEeCC---------CcEEEEEcCCCceeeeeccc-ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc
Q 029743 3 FAADAMKLLGTSGD---------GTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 3 ~s~~~~~l~~~~~d---------~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 72 (188)
|..+...|+++.-. ..|++.+...+..+..+... ...|...+.+ +.+++.++ ++.+.++.++. +..
T Consensus 469 f~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~-~~L 544 (1158)
T 3ei3_A 469 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHP-QEL 544 (1158)
T ss_dssp CCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEET-TEE
T ss_pred ccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeC-Cce
Confidence 34455666666431 23455554444444444422 2345555543 45666664 67888888764 221
Q ss_pred ccee-eeccCCceeEE-eec--C----CCEEEEecC-CCeEEEEecccCeeeeecccCCCcceeEEEeeC--CCCEEEEE
Q 029743 73 SDRF-VGLSPNSVDAL-LKL--D----EDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSI 141 (188)
Q Consensus 73 ~~~~-~~~~~~~v~~~-~~~--~----~~~l~~~~~-d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~ 141 (188)
.... .. -...+.|+ +.| . +++++.|.. |++|+++++...+.+....-.......++.+.. ...+|..+
T Consensus 545 ~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~ig 623 (1158)
T 3ei3_A 545 RQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCA 623 (1158)
T ss_dssp EEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEE
T ss_pred eeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEE
Confidence 1111 12 34578888 543 2 468999996 999999999876554332211111344554432 33567788
Q ss_pred eCCCcEEEEeCC
Q 029743 142 SHDSMLKLWDLD 153 (188)
Q Consensus 142 ~~d~~i~iwd~~ 153 (188)
-.||.+.-+.+.
T Consensus 624 l~dG~l~~~~~d 635 (1158)
T 3ei3_A 624 LGDGALFYFGLN 635 (1158)
T ss_dssp ETTSEEEEEEEC
T ss_pred eCCCeEEEEEEc
Confidence 889987766654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.65 Score=36.87 Aligned_cols=147 Identities=10% Similarity=0.028 Sum_probs=76.1
Q ss_pred ccCeEEEEeCC------CcEEEEEcCCCcee--eeecccccceEEEEEEeCCCEEEEecCCC--eEEEEEeCCcccccce
Q 029743 6 DAMKLLGTSGD------GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDR 75 (188)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~ 75 (188)
+++.++.|+.+ +.+.+||..+.+-. ..++.... -.+++...+++.++.|+.++ .+.+||..+.. ...
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~ 527 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKD 527 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEE
Confidence 56667777643 35788888775322 22221111 12223323788888887654 68888886421 111
Q ss_pred eee-----ccCCceeEE-eecC-CCEEEEecC--C-----CeEEEEecccCee-----eeeccc---CCCcceeEEEeeC
Q 029743 76 FVG-----LSPNSVDAL-LKLD-EDRVITGSE--N-----GLISLVGILPNRI-----IQPIAE---HSEYPIESLALSH 133 (188)
Q Consensus 76 ~~~-----~~~~~v~~~-~~~~-~~~l~~~~~--d-----~~v~~~d~~~~~~-----~~~~~~---~~~~~v~~~~~~~ 133 (188)
+.. .......++ +..+ ++.++.|+. + +.+.+||+.+... -..+.. ... .-.+++...
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-~~~~~~~~~ 606 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-YGSQIKYIT 606 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-BSCEEEEEE
T ss_pred ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc-ccceEEEeC
Confidence 110 011122223 4444 667777765 2 4588999887651 111111 111 111233333
Q ss_pred CCCEEEEEeC--------CCcEEEEeCCCcc
Q 029743 134 DRKFLGSISH--------DSMLKLWDLDDIL 156 (188)
Q Consensus 134 ~~~~l~~~~~--------d~~i~iwd~~~~~ 156 (188)
+++.++.|+. ...|.+||+.+..
T Consensus 607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp TTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred CCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 3677777774 3468999988654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.53 Score=40.59 Aligned_cols=142 Identities=11% Similarity=0.167 Sum_probs=83.5
Q ss_pred CcEEEEEcCC-Cceeeeeccc----ccceEEEEEEeCCCEEEEec-------CCCeEEEEEeCCcccccceeeeccCCce
Q 029743 17 GTLSVCNLRK-NTVQTRSEFS----EEELTSVVLMKNGRKVVCGS-------QSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (188)
Q Consensus 17 ~~i~i~~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~~v 84 (188)
..|+-|++.. ..+.+.+..| ...|..-..+++.++++..+ -.|.+.+|.++ +...+.+.| |...-
T Consensus 125 ~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e--r~~sQ~ieg-ha~~F 201 (1630)
T 1xi4_A 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEG-HAASF 201 (1630)
T ss_pred CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc--cccchhhhH-hHhhh
Confidence 5577777753 2333344333 34566666677777766432 34789999986 456666777 65544
Q ss_pred eEE-e--ecC-CCEEEEecC---CCeEEEEecccC---eeeee-----c--c--cCCCcceeEEEeeCCCCEEEEEeCCC
Q 029743 85 DAL-L--KLD-EDRVITGSE---NGLISLVGILPN---RIIQP-----I--A--EHSEYPIESLALSHDRKFLGSISHDS 145 (188)
Q Consensus 85 ~~~-~--~~~-~~~l~~~~~---d~~v~~~d~~~~---~~~~~-----~--~--~~~~~~v~~~~~~~~~~~l~~~~~d~ 145 (188)
..+ . .+. .+.++.+.. .++++|.++... .+... + . ...++|| ++..++....+...+.-|
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv-~~~vs~k~g~iy~itk~G 280 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYG 280 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce-EEEeccccCEEEEEecCc
Confidence 433 2 222 233333322 368888887532 11110 1 1 1123344 577788777888888999
Q ss_pred cEEEEeCCCccCCCCCC
Q 029743 146 MLKLWDLDDILKGSGNN 162 (188)
Q Consensus 146 ~i~iwd~~~~~~~~~~~ 162 (188)
.|++||+.++...-..+
T Consensus 281 ~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 281 YIHLYDLETGTCIYMNR 297 (1630)
T ss_pred eEEEEecccchhhhhcc
Confidence 99999999988654433
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.74 Score=33.27 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=58.6
Q ss_pred ccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc-ccce----eeeccCCceeEE-eecC---CCEEEEe---cCCCeE
Q 029743 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDR----FVGLSPNSVDAL-LKLD---EDRVITG---SENGLI 104 (188)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~----~~~~~~~~v~~~-~~~~---~~~l~~~---~~d~~v 104 (188)
-...+.|+|.|+|+++++.-..|.|++++...... .+.. +.. .......+ ++|+ +..|++. ..++.|
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~-g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPS-GEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCB-TTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeec-CCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 34678999999999887776688998887543111 1111 111 23445667 6874 3444432 234556
Q ss_pred EEEecccC----------eee-eecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 105 SLVGILPN----------RII-QPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 105 ~~~d~~~~----------~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
.-|.+..+ +.+ ..+..........|+|.|||.++++.+
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 55655431 111 122211111346799999998777654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.03 E-value=1.4 Score=33.04 Aligned_cols=105 Identities=9% Similarity=0.051 Sum_probs=56.8
Q ss_pred cceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc--cceeee-----ccCCceeEE-eecC---CCEEEEecC------
Q 029743 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--SDRFVG-----LSPNSVDAL-LKLD---EDRVITGSE------ 100 (188)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~-----~~~~~v~~~-~~~~---~~~l~~~~~------ 100 (188)
...++|+|.|+|+++++-...+.|++++... +.. +..+.. ........+ ++|+ +..|++...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3567999999999887765555787776532 221 111110 012334566 7885 555544432
Q ss_pred -------CCeEEEEecccC-------eeee-ecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 101 -------NGLISLVGILPN-------RIIQ-PIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 101 -------d~~v~~~d~~~~-------~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
...|.-++...+ +.+. .+..........|+|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555554321 1111 122111124688999999987776553
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.21 Score=36.00 Aligned_cols=107 Identities=8% Similarity=-0.026 Sum_probs=61.4
Q ss_pred CEEEEecCCCeEEEEEeCCcccccceeeecc-CCceeEEe---ec-CCCEEEEe-cCCCeEEEEecccCeeeeecccCCC
Q 029743 50 RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS-PNSVDALL---KL-DEDRVITG-SENGLISLVGILPNRIIQPIAEHSE 123 (188)
Q Consensus 50 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~v~~~~---~~-~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~~~~ 123 (188)
..++.++.||.|.-+|..+ ++.+-.+.. . ..++...- .+ ++..++.. ..||.|+.++..+|.....+....-
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~-~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHIIWSIEP-ENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEEEEECG-GGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEecC-CccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 4677888888888888765 455555543 2 12222221 12 22333343 6899999999887765443332210
Q ss_pred cceeEEEee-----------CCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 124 YPIESLALS-----------HDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 124 ~~v~~~~~~-----------~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
.....+... ..+..+++++.++.+...|+++++..
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence 000111211 03457788888999999998887643
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=2.2 Score=33.87 Aligned_cols=148 Identities=9% Similarity=0.031 Sum_probs=77.9
Q ss_pred ccCeEEEEeCC----CcEEEEEcCCCceeeee-c------ccccceEEEEEEe-CCCEEEEecCC------CeEEEEEeC
Q 029743 6 DAMKLLGTSGD----GTLSVCNLRKNTVQTRS-E------FSEEELTSVVLMK-NGRKVVCGSQS------GTVLLYSWG 67 (188)
Q Consensus 6 ~~~~l~~~~~d----~~i~i~~~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~~~d~~ 67 (188)
++..++.|+.+ ..+.+||..+++-...- . .....-.+++..+ +++.++.|+.+ ..+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 45666677643 46788888776432221 1 0111123334333 67777777654 357788876
Q ss_pred Ccccccceeeec--cCCceeEEeecCCCEEEEecCCC--eEEEEecccCeeeee-----cccCCCcceeEEEeeCC-CCE
Q 029743 68 YFKDCSDRFVGL--SPNSVDALLKLDEDRVITGSENG--LISLVGILPNRIIQP-----IAEHSEYPIESLALSHD-RKF 137 (188)
Q Consensus 68 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d~--~v~~~d~~~~~~~~~-----~~~~~~~~v~~~~~~~~-~~~ 137 (188)
+. ....+... ......++.-.+++.++.|+.++ .+.+||+.+..-... +..... ....+.+..+ ++.
T Consensus 477 t~--~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~-~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 477 TR--EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL-VSAGLEFDPVSKQG 553 (695)
T ss_dssp TT--EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC-BSCEEEEETTTTEE
T ss_pred CC--cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc-ceeEEEEeCCCCEE
Confidence 42 11111110 11111222224788888887544 689999887653221 111111 1233555555 666
Q ss_pred EEEEeC--C-----CcEEEEeCCCcc
Q 029743 138 LGSISH--D-----SMLKLWDLDDIL 156 (188)
Q Consensus 138 l~~~~~--d-----~~i~iwd~~~~~ 156 (188)
++.|+. + +.+.+||+.+..
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCc
Confidence 677765 2 458889987665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=93.45 E-value=2 Score=37.31 Aligned_cols=152 Identities=13% Similarity=0.044 Sum_probs=82.0
Q ss_pred eecccCeEEEEeC-------CCcEEEEEcCCCceeeeecccccceEEEEEE--eCC-CEEEEecC---CCeEEEEEeCCc
Q 029743 3 FAADAMKLLGTSG-------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLM--KNG-RKVVCGSQ---SGTVLLYSWGYF 69 (188)
Q Consensus 3 ~s~~~~~l~~~~~-------d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~l~~~~~---d~~i~~~d~~~~ 69 (188)
.+++.++++..+- .|.+.+|..+.+. -+.+.||.+....+... +.. ..++.+.. .+.+++-++...
T Consensus 158 ~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~ 236 (1630)
T 1xi4_A 158 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (1630)
T ss_pred eCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCC
Confidence 3567777664432 4778888876543 24556665544443332 111 22222222 268888888542
Q ss_pred --cc-cc-----ceeee--ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE
Q 029743 70 --KD-CS-----DRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 70 --~~-~~-----~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
+. .. ..+.. .......++ .++....+...+.-|.|++||+.++.++..-+-..+ +|...+-+....-+
T Consensus 237 ~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~ 315 (1630)
T 1xi4_A 237 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGI 315 (1630)
T ss_pred ccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCC-ceEEeccCCCCCce
Confidence 11 11 11111 001122233 467677788888999999999999998765443333 55544444333334
Q ss_pred EEEeCCCcEEEEeCCCcc
Q 029743 139 GSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~ 156 (188)
+.....|.|.--.+....
T Consensus 316 ~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 316 IGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred EEEcCCceEEEEEEccch
Confidence 444466666655555443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=93.40 E-value=1.6 Score=31.50 Aligned_cols=50 Identities=6% Similarity=0.120 Sum_probs=33.3
Q ss_pred CCCEEEEecCCCeEEEEecccCeeeee---cccCCCcceeEEEeeCCCCEEEEE
Q 029743 91 DEDRVITGSENGLISLVGILPNRIIQP---IAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 91 ~~~~l~~~~~d~~v~~~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
+|.++++....+.|...++..++.... +... ...+..+++.|||.++++.
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDR-GQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGG-CCCEEEEEECTTSCEEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCC-CCceeEEEECCCCcEEEEE
Confidence 577777777788888888876543322 2222 2268899999999866543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=92.66 E-value=4.2 Score=34.50 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=79.1
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-ccCCce
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNSV 84 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~v 84 (188)
+| +|++|- ..+|++|++...+.++.-..+-..+..+.....+++++.|..-..+.+...+.....+..+.. .....+
T Consensus 895 ~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~v 972 (1158)
T 3ei3_A 895 NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 972 (1158)
T ss_dssp TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCE
T ss_pred CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccE
Confidence 35 444433 478999999866544311111112333344446789999988888888776543333333332 133456
Q ss_pred eEEeecCCCEEEEecCCCeEEEEecccC-------e-eeeecccCCCcceeEEE---eeCC---------CCEEEEEeCC
Q 029743 85 DALLKLDEDRVITGSENGLISLVGILPN-------R-IIQPIAEHSEYPIESLA---LSHD---------RKFLGSISHD 144 (188)
Q Consensus 85 ~~~~~~~~~~l~~~~~d~~v~~~d~~~~-------~-~~~~~~~~~~~~v~~~~---~~~~---------~~~l~~~~~d 144 (188)
+++..-+...++.+..+|.+.+...... . ....-.-|-+..|+++. +.+. ...++.++.+
T Consensus 973 ta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~ 1052 (1158)
T 3ei3_A 973 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVN 1052 (1158)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETT
T ss_pred EEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecC
Confidence 6662223357778889999998875431 1 11111222233577665 2222 2346777888
Q ss_pred CcEEEE
Q 029743 145 SMLKLW 150 (188)
Q Consensus 145 ~~i~iw 150 (188)
|.|-+.
T Consensus 1053 GsIg~l 1058 (1158)
T 3ei3_A 1053 GMIGLV 1058 (1158)
T ss_dssp SCEEEE
T ss_pred CEEEEE
Confidence 888775
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=92.45 E-value=2.7 Score=31.69 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=49.0
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
.+|..+.+|.-. ..++.|+|+++...++...- ...|..=.|-.+. .|+..+ +..|+.|++.....+.+.+..
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheec
Confidence 567777777765 68999999999988877764 3456666676544 333332 347999998654455555554
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=92.16 E-value=2 Score=33.42 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=48.4
Q ss_pred eEE-eecCCCEEEEec-CCCeEEEEecccC------ee-------eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 85 DAL-LKLDEDRVITGS-ENGLISLVGILPN------RI-------IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 85 ~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~------~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
..+ .+|||+++++++ .+.++.++|++.- +. ..+.... -.....+|.++|.-..+--.|.+|--
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G--lGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG--LGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC--SCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC--CcccEEEECCCCceEeeeeecceEEE
Confidence 344 789999987766 6889999998742 11 2222222 13667899999955556668999999
Q ss_pred EeCCCc
Q 029743 150 WDLDDI 155 (188)
Q Consensus 150 wd~~~~ 155 (188)
|++...
T Consensus 404 Wni~~a 409 (638)
T 3sbq_A 404 WNMEEA 409 (638)
T ss_dssp EEHHHH
T ss_pred EeccHH
Confidence 999864
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=90.37 E-value=1.4 Score=34.35 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=41.6
Q ss_pred eEE-eecCCCEEEEecCC------------CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEE
Q 029743 85 DAL-LKLDEDRVITGSEN------------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d------------~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
-.| |+|.|.++++-..+ +.+.+.+..+++..+-+.++.++.++.++|+||++.|.+.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 445 78889877664432 3466777777877766777766789999999999988655
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=90.37 E-value=4.6 Score=30.43 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=30.5
Q ss_pred CeeecccC-eEEEEeCCCcEEEEEcCCCc---eeeeec-----c----cccceEEEEEEeC
Q 029743 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNT---VQTRSE-----F----SEEELTSVVLMKN 48 (188)
Q Consensus 1 l~~s~~~~-~l~~~~~d~~i~i~~~~~~~---~~~~~~-----~----~~~~v~~~~~~~~ 48 (188)
|+|.|+|. .|+++...|.|++++..... .+..+. + .......|+++|+
T Consensus 19 ~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 19 ALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred EEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 57889986 56666788999999754221 111111 0 1346789999985
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=89.98 E-value=1.1 Score=34.95 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=37.5
Q ss_pred CeeecccCeEEEEeCC------------CcEEEEEcCCCceeeeecc-cccceEEEEEEeCCCEEEEe
Q 029743 1 MTFAADAMKLLGTSGD------------GTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCG 55 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d------------~~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 55 (188)
|+|+|.|+++++-..+ +.+.+.+..+++..+.+.+ ....++.++|+||++.|++.
T Consensus 481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4788999876665432 2345556666776655554 34679999999999887764
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=88.58 E-value=5.5 Score=28.87 Aligned_cols=105 Identities=10% Similarity=0.158 Sum_probs=59.3
Q ss_pred cceEEEEEEeCCCEEEEe------------cCCCeEEEEEeCCcccccceeeec------cCCceeEE-eec--CCC-EE
Q 029743 38 EELTSVVLMKNGRKVVCG------------SQSGTVLLYSWGYFKDCSDRFVGL------SPNSVDAL-LKL--DED-RV 95 (188)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~------------~~d~~i~~~d~~~~~~~~~~~~~~------~~~~v~~~-~~~--~~~-~l 95 (188)
.....++..|+|..++++ ..+|.|.++|.+........+.-. ..-....+ +.+ ++. +|
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345677778877665554 268899999986422222222210 11234555 433 454 34
Q ss_pred EEe-cC--CCeEEEEecccCe----eeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 96 ITG-SE--NGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 96 ~~~-~~--d~~v~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
+++ .. +..|.+|++..+. .+..+.+..-...+.+++.++|.+.++..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATND 183 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEES
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCC
Confidence 443 33 4678888776432 33344443333678999999998877654
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=1.9 Score=33.46 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=37.1
Q ss_pred CeeecccCeEEEEeC------------CCcEEEEEcCCCceeeeeccc-ccceEEEEEEeCCCEEEEe
Q 029743 1 MTFAADAMKLLGTSG------------DGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCG 55 (188)
Q Consensus 1 l~~s~~~~~l~~~~~------------d~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 55 (188)
|.|.++|.+.++... .+.+..++..+++....+... ...++.++|+||++.|+++
T Consensus 481 L~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 467788877664332 124666666677766555433 3578999999999988775
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=87.82 E-value=3.9 Score=31.78 Aligned_cols=59 Identities=15% Similarity=0.043 Sum_probs=39.6
Q ss_pred eeEE-eecCCCEEEEecC------------CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 84 VDAL-LKLDEDRVITGSE------------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~------------d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
...| |.++|.+.++... .+.|..++..+++....+.......++.++|+||++.|.++-
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3345 6788887773321 225777777777766555544344689999999999887664
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=85.99 E-value=5.2 Score=33.14 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=28.3
Q ss_pred eeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec
Q 029743 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~ 118 (188)
+.++ ..++..++++-+.|+++|+|++.+++++.+.
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3344 4667889999999999999999999877654
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=85.50 E-value=4.8 Score=33.38 Aligned_cols=31 Identities=26% Similarity=0.139 Sum_probs=26.0
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeee
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRS 33 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 33 (188)
..++..++++-+.|+++++|++.+++++.+.
T Consensus 243 ~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 243 FLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3456778999999999999999999887654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=84.86 E-value=11 Score=28.46 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=22.5
Q ss_pred cceEEEEEEeCCC-EEEEecCCCeEEEEEeC
Q 029743 38 EELTSVVLMKNGR-KVVCGSQSGTVLLYSWG 67 (188)
Q Consensus 38 ~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~ 67 (188)
...+.|+|.|++. .++++...|.|++++.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3568999999986 45556678999998743
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.45 E-value=4.7 Score=34.10 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=26.2
Q ss_pred eecCCCEEEEecCCCeEEEEecccCeeeeec
Q 029743 88 LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (188)
Q Consensus 88 ~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~ 118 (188)
..++..++++-+.|+++++|++.+++++.+.
T Consensus 245 ~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 245 FLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp EETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3567789999999999999999998876553
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.90 E-value=8.7 Score=26.66 Aligned_cols=143 Identities=13% Similarity=0.164 Sum_probs=83.1
Q ss_pred CeEEEEeCCCcEEEEE---cCCCceeeeecccccceEEEEEEe--CCCEEEEecCCCeEEEEEeCCcc-----cccceee
Q 029743 8 MKLLGTSGDGTLSVCN---LRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-----DCSDRFV 77 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~---~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~ 77 (188)
.+|+..+..|.++-.. +........+. ....|..+.. + +...++..+.+|.++...+.... .....+.
T Consensus 36 ~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk 113 (276)
T 3no0_A 36 EGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT 113 (276)
T ss_dssp SCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC
T ss_pred CEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC
Confidence 4555556677766443 22221111132 3456666644 4 46789999999999999875421 1111122
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEeccc---------CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcE
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 147 (188)
. ...+..+ .......++..+..|.+..+.... |.....+... + .|..+...+++..++..+..|.+
T Consensus 114 e--gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-d-~vv~~~~~~~~~~ll~~T~~G~~ 189 (276)
T 3no0_A 114 E--GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-D-ETSGLRIWNGEPYLLVITAKGRV 189 (276)
T ss_dssp T--TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-C-CEEEEEEESSCSEEEEEETTSCE
T ss_pred C--CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-C-EEEEEEEeCCCCEEEEEeCCCcE
Confidence 2 2334444 333455788888889887777532 1222233332 3 56666655666788888999999
Q ss_pred EEEeCCCcc
Q 029743 148 KLWDLDDIL 156 (188)
Q Consensus 148 ~iwd~~~~~ 156 (188)
+...+....
T Consensus 190 kr~~~~e~~ 198 (276)
T 3no0_A 190 KKISHEEIP 198 (276)
T ss_dssp EEEEGGGSC
T ss_pred EEeEHHHcc
Confidence 888776543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=81.10 E-value=19 Score=28.68 Aligned_cols=137 Identities=19% Similarity=0.156 Sum_probs=73.7
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeec----ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec-----c
Q 029743 10 LLGTSGDGTLSVCNLRKNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-----S 80 (188)
Q Consensus 10 l~~~~~d~~i~i~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~ 80 (188)
|-.++.+ -|..++..+++...... .....|.++....++...+ ++.+ -+..++.... . ...+... .
T Consensus 115 lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~-~-~~~~~~~~~~~~~ 189 (758)
T 3ott_A 115 LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNG-K-FEGIPLPVHSSQS 189 (758)
T ss_dssp EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTT-E-EEEECCCCCTTCS
T ss_pred EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCC-c-eEEecCCCccccc
Confidence 4444444 57777776654332101 1124577777766666554 4444 4667776432 1 2111110 0
Q ss_pred CCceeEEe-ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
...+.+++ .+++..|..|+. +-+..++..+++... +.......|.++....++.+.+ |+. +-+.+++..+.
T Consensus 190 ~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 190 NLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTT 261 (758)
T ss_dssp SCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTS
T ss_pred cceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCC
Confidence 12367774 566776666664 457788877654322 1111122588888877776655 343 45788887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 188 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.003 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.1 bits (157), Expect = 2e-13
Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 2/138 (1%)
Query: 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74
D + + ++R+ + E ++ ++ NG GS T L+ ++
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133
+ ++ ++ G ++ ++ L +A H + L ++
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTD 322
Query: 134 DRKFLGSISHDSMLKLWD 151
D + + S DS LK+W+
Sbjct: 323 DGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.4 bits (85), Expect = 5e-04
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKL 149
+ + TGS++ L + ++ + + + I S++ S + L + D +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 150 WDLDD-----ILKGSGNNISQAA 167
WD +L G N +S
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLG 319
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 36.6 bits (83), Expect = 0.001
Identities = 10/65 (15%), Positives = 25/65 (38%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
++F+ LL D +V + K + ++ + + +G V GS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 61 VLLYS 65
+ +++
Sbjct: 336 LKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.1 bits (123), Expect = 6e-09
Identities = 22/171 (12%), Positives = 53/171 (30%), Gaps = 22/171 (12%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-------------- 46
+ D + S D T+ V + + + +
Sbjct: 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 208
Query: 47 ------KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE 100
K G ++ GS+ T+ ++ C VG L +++ ++
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 101 NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+ + + R ++ + H + SL ++ + S D +K+W+
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.3 bits (108), Expect = 5e-07
Identities = 23/191 (12%), Positives = 60/191 (31%), Gaps = 25/191 (13%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
++ + ++ S D T+ + ++ E + V ++G + S T
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166
Query: 61 VLLYSWG-------------------YFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN 101
V ++ + + S + + S +++GS +
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226
Query: 102 GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD-----IL 156
I + + + + H + + KF+ S + D L++WD + L
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285
Query: 157 KGSGNNISQAA 167
+ ++
Sbjct: 286 NAHEHFVTSLD 296
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (115), Expect = 8e-08
Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 23/178 (12%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEEL-------TSVVLMKNGRKVV 53
D + S D + V + + R + E SVV ++G+ VV
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 54 CGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV-----------DALLKLDEDRVITGSENG 102
GS +V L++ + SD S +++ +++GS++
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 103 LISLVGILPNRIIQPIAEHSE-----YPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155
+ + + H +L + + S D ++W I
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 9e-05
Identities = 21/152 (13%), Positives = 51/152 (33%), Gaps = 22/152 (14%)
Query: 48 NGRKVVCGSQSGTVLLYS------WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN 101
+G+ + GS V ++ ++ G + + D V++GS +
Sbjct: 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 275
Query: 102 GLISLVGILPNRIIQPIAE-----------HSEYPIESLALSHDRKFLGSISHDSMLKLW 150
+ L + + + S+A + + +++ S S D + W
Sbjct: 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
Query: 151 DLDD-----ILKGSGNNISQAAESDSDGDDMD 177
D +L+G N++ A ++ +
Sbjct: 336 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 3e-07
Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 10/161 (6%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ D + ++ S D ++ V ++ + + + L +V G+ T
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST 238
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI-- 118
V ++ + S L+ +++ VIT S++G + L + I+ +
Sbjct: 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 298
Query: 119 --AEHSEYPIESLALSHDRKFLGSISHD----SMLKLWDLD 153
+ S + + S+ + S + + L + D D
Sbjct: 299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 5e-05
Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 5/147 (3%)
Query: 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67
+++ + D + V + T L +G VV GS ++ ++
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCL--HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 205
Query: 68 YFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127
S S ++L ++ +++G+ + + + I + +Q + +++
Sbjct: 206 TGNCIHTLTGHQSLTSG---MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 262
Query: 128 SLALSHDRKFLGSISHDSMLKLWDLDD 154
L ++ F+ + S D +KLWDL
Sbjct: 263 VTCLQFNKNFVITSSDDGTVKLWDLKT 289
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.3 bits (105), Expect = 1e-06
Identities = 9/63 (14%), Positives = 27/63 (42%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D ++ + S + I + + ++ + I + + L + ++ L SIS + +
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Query: 151 DLD 153
+ +
Sbjct: 309 NPE 311
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 4e-06
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
++ ++ L++ I E S + S +S D K++ + S D ++
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESS--SVLSCDISVDDKYIVTGSGDKKATVY 333
Query: 151 DL 152
++
Sbjct: 334 EV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.001
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ FA + T D L+ +S+ S + S + + + +V GS
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-VLSCDISVDDKYIVTGSGDKK 329
Query: 61 VLLYS 65
+Y
Sbjct: 330 ATVYE 334
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.5 bits (85), Expect = 5e-04
Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 91 DEDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148
D ++ N + + N+ + + EH+ + + + D + + D
Sbjct: 18 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAY 76
Query: 149 LWD 151
+W
Sbjct: 77 VWT 79
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.4 bits (82), Expect = 0.001
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 113 RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
+I+Q +Y I + + + L S D L ++ D
Sbjct: 2 QIVQIEQAPKDY-ISDIKIIPSKSLLLITSWDGSLTVYKFDI 42
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (79), Expect = 0.003
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 17/147 (11%)
Query: 14 SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73
SGD T+ V N T + + + L R VV GS T+ L+ + +
Sbjct: 155 SGDRTIKVWNTS--TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI---ECGA 209
Query: 74 DRFVGLSPNSVDALLKLDEDRVITGSENGLISL---------VGILPNRIIQPIAEHSEY 124
V + ++ D R+++G+ +G I + ++ + EHS
Sbjct: 210 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG- 268
Query: 125 PIESLALSHDRKFLGSISHDSMLKLWD 151
L D + S SHD + +WD
Sbjct: 269 --RVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 34.6 bits (77), Expect = 0.004
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
H++ I +L+ S D K L S + + WD+
Sbjct: 11 HNK-AITALSSSADGKTLFSADAEGHINSWDIST 43
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 188 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.95 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.93 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.93 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.92 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.91 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.86 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.84 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.82 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.82 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.8 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.79 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.79 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.76 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.75 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.74 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.73 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.69 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.63 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.57 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.54 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.51 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.49 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.48 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.45 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.41 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.38 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.18 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.15 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.11 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.1 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.05 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.95 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.86 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.84 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.81 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.8 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.76 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.74 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.71 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.68 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.62 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.56 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.42 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.41 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.39 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.26 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.26 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.04 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.88 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.87 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.53 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.52 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.46 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.39 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.28 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.23 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.13 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.8 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.7 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.6 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.58 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.4 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.32 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.25 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.18 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.0 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.79 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.6 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.47 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.23 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.21 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.6 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.03 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 93.94 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.01 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 91.68 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 90.94 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.72 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 89.77 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 89.44 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 89.31 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 87.78 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 86.88 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=2.4e-29 Score=178.72 Aligned_cols=147 Identities=16% Similarity=0.252 Sum_probs=132.7
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee--eec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~ 79 (188)
.+.+.+.++++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++|+++.. .....+ ..
T Consensus 191 ~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~- 268 (340)
T d1tbga_ 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDN- 268 (340)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT-
T ss_pred ccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc-cccccccccc-
Confidence 35678889999999999999999999999999999999999999999999999999999999999763 443333 23
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
+...+.++ |+|++++|++|+.||.|++||+.+++++..+.+|.. +|++++|+|++++|++++.||.|++||
T Consensus 269 ~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~-~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 45668888 899999999999999999999999999999999976 899999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=3e-29 Score=178.01 Aligned_cols=154 Identities=12% Similarity=0.196 Sum_probs=136.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee--eeecccccceEEEEEEeCCCEEEEecCC--CeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~ 76 (188)
++|+|+|++|++|+.|++|++|++..+... ..+..|..+|.+++|+|++++|++++.+ ..+++|+++. +.....+
T Consensus 64 ~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~-~~~~~~l 142 (311)
T d1nr0a1 64 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGNL 142 (311)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCBCC
T ss_pred EEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccc-ccccccc
Confidence 479999999999999999999999886543 4567899999999999999999988764 5699999986 5777788
Q ss_pred eeccCCceeEE-eecCCCE-EEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 77 VGLSPNSVDAL-LKLDEDR-VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~-l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.+ |...|.++ |+|++++ +++|+.|+.|++||+++++....+..|.. +|.++.|+|++++|++++.|+.|++||+.+
T Consensus 143 ~~-h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~-~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~ 220 (311)
T d1nr0a1 143 TG-QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220 (311)
T ss_dssp CC-CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cc-cccccccccccccceeeecccccccccccccccccccccccccccc-cccccccCcccccccccccccccccccccc
Confidence 88 99999999 8999885 78899999999999999999999998866 899999999999999999999999999987
Q ss_pred ccC
Q 029743 155 ILK 157 (188)
Q Consensus 155 ~~~ 157 (188)
...
T Consensus 221 ~~~ 223 (311)
T d1nr0a1 221 GTK 223 (311)
T ss_dssp CCE
T ss_pred ccc
Confidence 654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=6.1e-29 Score=180.17 Aligned_cols=155 Identities=10% Similarity=0.048 Sum_probs=132.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCc--eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc-cccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~ 77 (188)
++|+|++++||+|+.|+.|+||+...++ .+..+.+|..+|.+++|+|++++|++++.|+.|++||+.... .....+.
T Consensus 13 ~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~ 92 (371)
T d1k8kc_ 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 92 (371)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccc
Confidence 4799999999999999999999998775 556778999999999999999999999999999999997532 2334455
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee----eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI----IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
+ |...+.++ |+|+++++++++.++.|++|++..... ......|.. .|.+++|+|++++|++++.|+.|++|++
T Consensus 93 ~-~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~p~~~~l~s~s~D~~v~v~~~ 170 (371)
T d1k8kc_ 93 R-INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFSA 170 (371)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred c-ccccccccccccccccceeecccCcceeeeeeccccccccccccccccc-ccccccccccccceeccccCcEEEEEee
Confidence 6 78889999 899999999999999999999876542 233455655 7999999999999999999999999998
Q ss_pred CCccC
Q 029743 153 DDILK 157 (188)
Q Consensus 153 ~~~~~ 157 (188)
.....
T Consensus 171 ~~~~~ 175 (371)
T d1k8kc_ 171 YIKEV 175 (371)
T ss_dssp CCTTT
T ss_pred ccCcc
Confidence 76543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.1e-28 Score=175.17 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=137.1
Q ss_pred CeeecccCeEEEEeC--CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCE-EEEecCCCeEEEEEeCCcccccceee
Q 029743 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
++|+|++++|++++. +..++||++++++....+.+|...|.+++|+|++++ |++|+.|+.|++||++. ......+.
T Consensus 108 v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-~~~~~~~~ 186 (311)
T d1nr0a1 108 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFG 186 (311)
T ss_dssp EEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc-cccccccc
Confidence 479999999999876 456999999999988899999999999999999875 78899999999999986 56777777
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc-------cCCCcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-------EHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
. |...+.++ ++|+++++++++.|+.|++||++++.....+. +|.. .|++++|+|++++|++++.|+.|+|
T Consensus 187 ~-~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~i 264 (311)
T d1nr0a1 187 E-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKI 264 (311)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEE
T ss_pred c-ccccccccccCccccccccccccccccccccccccccccccccccccccccc-cccccccCCCCCEEEEEeCCCeEEE
Confidence 8 89999999 89999999999999999999999887665543 4544 7999999999999999999999999
Q ss_pred EeCCCccCCC
Q 029743 150 WDLDDILKGS 159 (188)
Q Consensus 150 wd~~~~~~~~ 159 (188)
||+++.....
T Consensus 265 wd~~t~~~~~ 274 (311)
T d1nr0a1 265 WNVATLKVEK 274 (311)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCcEEE
Confidence 9999876543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=3.3e-28 Score=170.72 Aligned_cols=148 Identities=14% Similarity=0.237 Sum_probs=137.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC--------------------CEEEEecCCCe
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG--------------------RKVVCGSQSGT 60 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~l~~~~~d~~ 60 (188)
++|+|++++|++++.|+.|++|++..++....+..|...+.++.|+|++ ..+++++.|+.
T Consensus 149 ~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 228 (317)
T d1vyhc1 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228 (317)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred eecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE
Confidence 3689999999999999999999999999998999999999999998764 36889999999
Q ss_pred EEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEE
Q 029743 61 VLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 61 i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
|++|++.. +.++..+.+ |...+.++ ++|++++|++++.||.|++||+++++++..+.+|.+ +|++++|+|++++|+
T Consensus 229 i~~~~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~ 305 (317)
T d1vyhc1 229 IKMWDVST-GMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVV 305 (317)
T ss_dssp EEEEETTT-TEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSCEE
T ss_pred EEEEECCC-CcEEEEEeC-CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEE
Confidence 99999986 578888888 99999999 799999999999999999999999999999999976 899999999999999
Q ss_pred EEeCCCcEEEEe
Q 029743 140 SISHDSMLKLWD 151 (188)
Q Consensus 140 ~~~~d~~i~iwd 151 (188)
+++.|++|++||
T Consensus 306 s~s~Dg~i~iWd 317 (317)
T d1vyhc1 306 TGSVDQTVKVWE 317 (317)
T ss_dssp EEETTSEEEEEC
T ss_pred EEeCCCeEEEeC
Confidence 999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.7e-28 Score=171.60 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=130.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+++++.+++++.|+.+++||+++++.+..+. |...|.+++|+|+++.|++++.++.+++||++.. .. ..... |
T Consensus 189 l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~-~~-~~~~~-~ 264 (337)
T d1gxra_ 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DK-YQLHL-H 264 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-CE-EEECC-C
T ss_pred ccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccc-cc-ccccc-c
Confidence 4689999999999999999999999998877664 7889999999999999999999999999999753 33 34556 8
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
...+.++ |+|++++|++++.|+.|++||+.+++++..+. |.. .|.+++|+|++++|++++.|+.|+|||+
T Consensus 265 ~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~-~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESS-SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS-CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCC-CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 8899999 89999999999999999999999999887765 434 7999999999999999999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=1.9e-27 Score=168.82 Aligned_cols=157 Identities=17% Similarity=0.274 Sum_probs=133.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-----------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------- 69 (188)
|+|+|++++|++|+.||+|+|||+.+++.+..+..|..+|.+++|+|+++++++++.|+.+.+|+....
T Consensus 61 l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 140 (340)
T d1tbga_ 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEEC
T ss_pred EEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecc
Confidence 579999999999999999999999999999999999999999999999998888888888888775321
Q ss_pred ---------------------------------------------------------------------------ccccc
Q 029743 70 ---------------------------------------------------------------------------KDCSD 74 (188)
Q Consensus 70 ---------------------------------------------------------------------------~~~~~ 74 (188)
+.++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~ 220 (340)
T d1tbga_ 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220 (340)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEE
Confidence 12233
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc--cCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA--EHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
.+.+ |...+.++ |+|++++|++++.|+.|++|+++.......+. .+.. .|.+++|+|++++|++++.||.|++||
T Consensus 221 ~~~~-h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~g~~dg~i~iwd 298 (340)
T d1tbga_ 221 TFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-GITSVSFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp EECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS-CEEEEEECSSSCEEEEEETTSCEEEEE
T ss_pred EEeC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccC-ceEEEEECCCCCEEEEEECCCEEEEEE
Confidence 3455 77889999 89999999999999999999999888766553 3323 799999999999999999999999999
Q ss_pred CCCccCCC
Q 029743 152 LDDILKGS 159 (188)
Q Consensus 152 ~~~~~~~~ 159 (188)
+.+.....
T Consensus 299 ~~~~~~~~ 306 (340)
T d1tbga_ 299 ALKADRAG 306 (340)
T ss_dssp TTTCCEEE
T ss_pred CCCCcEEE
Confidence 98876543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.6e-27 Score=170.49 Aligned_cols=155 Identities=14% Similarity=0.242 Sum_probs=133.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee-----eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCc-ccccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ-----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-KDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~ 74 (188)
++|+|+|++|++|+ |+.|+|||+..+... ....+|...|.+++|+|++++|++++.|+.|++||+... .....
T Consensus 57 v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 135 (337)
T d1gxra_ 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred EEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccc
Confidence 47999999999987 799999999764322 223478899999999999999999999999999998642 23445
Q ss_pred eeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
.+.. |...+.++ ++|++.++++++.++.|++|+++++++......|.. .|.+++|++++..+++++.|+.|++||++
T Consensus 136 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-~v~~l~~s~~~~~~~~~~~d~~v~i~d~~ 213 (337)
T d1gxra_ 136 ELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 5667 88888888 899999999999999999999999999888888866 89999999999999999999999999998
Q ss_pred CccCC
Q 029743 154 DILKG 158 (188)
Q Consensus 154 ~~~~~ 158 (188)
+....
T Consensus 214 ~~~~~ 218 (337)
T d1gxra_ 214 EGRQL 218 (337)
T ss_dssp TTEEE
T ss_pred cceee
Confidence 76543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=1.2e-26 Score=162.90 Aligned_cols=155 Identities=10% Similarity=0.142 Sum_probs=118.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEe-------------
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW------------- 66 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~------------- 66 (188)
|+|+|++++|++|+.|+.|++||+++++.+..+. .|...|.+++|+|+++++ +++.|+.+++|+.
T Consensus 18 l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~ 96 (299)
T d1nr0a2 18 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVAN 96 (299)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCccccccccccc
Confidence 5799999999999999999999999887776664 567777777777765433 3334445555543
Q ss_pred ---------------------------------------------------------------------CCcccccceee
Q 029743 67 ---------------------------------------------------------------------GYFKDCSDRFV 77 (188)
Q Consensus 67 ---------------------------------------------------------------------~~~~~~~~~~~ 77 (188)
...........
T Consensus 97 ~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 176 (299)
T d1nr0a2 97 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI 176 (299)
T ss_dssp ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 32111111123
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeee---eecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
. |...+.++ ++|+++++++++.++.|++||+.++... ..+.+|.. +|++++|+|++++|++++.|+.|++||++
T Consensus 177 ~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~ 254 (299)
T d1nr0a2 177 V-HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMN 254 (299)
T ss_dssp E-CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccceEEEcCCCEEEEEECC
Confidence 4 67788899 8999999999999999999999877654 34556755 89999999999999999999999999998
Q ss_pred CccCC
Q 029743 154 DILKG 158 (188)
Q Consensus 154 ~~~~~ 158 (188)
+....
T Consensus 255 ~~~~~ 259 (299)
T d1nr0a2 255 KPSDH 259 (299)
T ss_dssp CTTSC
T ss_pred CCCcc
Confidence 76543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=5.3e-27 Score=169.87 Aligned_cols=155 Identities=16% Similarity=0.124 Sum_probs=129.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee--eeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc---cce
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC---SDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~ 75 (188)
|+|+|++++|++++.|++|++||+.++... ..+.+|...|.+++|+|+++.|++++.|+.+++|++...... ...
T Consensus 57 l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~ 136 (371)
T d1k8kc_ 57 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136 (371)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccc
Confidence 479999999999999999999999876543 445678899999999999999999999999999998753221 222
Q ss_pred eeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccC------------------eeeeecccCCCcceeEEEeeCCCC
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN------------------RIIQPIAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~ 136 (188)
... |...+.++ |+|++++|++|+.|+.|++|++... ..+.....|.. .|.+++|+|+++
T Consensus 137 ~~~-~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~ 214 (371)
T d1k8kc_ 137 KKP-IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGS 214 (371)
T ss_dssp CTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSS
T ss_pred ccc-cccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccC-cEEEEEeecccc
Confidence 344 67789999 8999999999999999999997542 23445566655 799999999999
Q ss_pred EEEEEeCCCcEEEEeCCCccC
Q 029743 137 FLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+|++++.|+.|++||+.+...
T Consensus 215 ~l~s~~~d~~i~iwd~~~~~~ 235 (371)
T d1k8kc_ 215 RVAWVSHDSTVCLADADKKMA 235 (371)
T ss_dssp EEEEEETTTEEEEEEGGGTTE
T ss_pred cccccccCCcceEEeeecccc
Confidence 999999999999999987653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.6e-27 Score=169.79 Aligned_cols=149 Identities=18% Similarity=0.300 Sum_probs=126.4
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeee-------cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc------
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK------ 70 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------ 70 (188)
.+++++|++++.|+.|++|+..++.....+ .+|...|.+++|+|++++|++++.|+.|++||+....
T Consensus 214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 293 (388)
T d1erja_ 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293 (388)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccc
Confidence 458899999999999999999987665543 3578899999999999999999999999999986432
Q ss_pred -----cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEE------eeCCCCEE
Q 029743 71 -----DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLA------LSHDRKFL 138 (188)
Q Consensus 71 -----~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l 138 (188)
........ |...+.++ ++|++++|++|+.||.|++||+++++++..+.+|.+ .|.+++ |+|++++|
T Consensus 294 ~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~-~V~~~~~~~~~~~spd~~~l 371 (388)
T d1erja_ 294 TPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEYNVF 371 (388)
T ss_dssp -----CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTTCEEE
T ss_pred cccccceeeeccc-ccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC-CEEEEEEecCcccCCCCCEE
Confidence 12233445 77889999 899999999999999999999999999999999976 899887 46789999
Q ss_pred EEEeCCCcEEEEeCCC
Q 029743 139 GSISHDSMLKLWDLDD 154 (188)
Q Consensus 139 ~~~~~d~~i~iwd~~~ 154 (188)
++++.||+|+||++++
T Consensus 372 ~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 372 ATGSGDCKARIWKYKK 387 (388)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEEeCCCEEEEEeeee
Confidence 9999999999999864
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=4.5e-26 Score=159.66 Aligned_cols=154 Identities=14% Similarity=0.275 Sum_probs=141.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
|+|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++..++++..++.+.+|+... ......+.. +
T Consensus 23 l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 100 (317)
T d1vyhc1 23 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHG-H 100 (317)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-SCEEECCCC-C
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc-ccccccccc-c
Confidence 57999999999999999999999999999999999999999999999999999999999999999875 455555666 7
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
...+.++ ++|++..+++++.|+.+++||+++++.+..+.+|.. .+.+++|++++.+|++++.|+.|++|++.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~ 177 (317)
T d1vyhc1 101 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 177 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC-cceeeecccCCCEEEEEeCCCeEEEEeecccee
Confidence 8888888 799999999999999999999999999999998866 799999999999999999999999999987654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=3.5e-26 Score=160.45 Aligned_cols=151 Identities=21% Similarity=0.243 Sum_probs=123.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceee-eecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc--cccceee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFV 77 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~ 77 (188)
++|+|++++|++++.|+.|++||+.+++... ....|...|.+++|+|++++|++++.++.|++||+.... .....+.
T Consensus 142 ~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 221 (299)
T d1nr0a2 142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT 221 (299)
T ss_dssp EEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4689999999999999999999998876543 334688999999999999999999999999999987532 2334556
Q ss_pred eccCCceeEE-eecCCCEEEEecCCCeEEEEecccCee--eeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 029743 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (188)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (188)
. |...+.++ |+|++++|++|+.|+.|++||++++.. ......|....+..+.| +++++|++++.|+.|++||+.
T Consensus 222 ~-h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 222 F-HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred c-cccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 7 88899999 899999999999999999999987643 33333444435766655 567799999999999999984
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.2e-26 Score=169.13 Aligned_cols=138 Identities=14% Similarity=0.183 Sum_probs=116.0
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeee------cccccceEEEEEEeCCCEEEEecCCC---eEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS------EFSEEELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~ 71 (188)
++|+|++ +|++|+.|++|++||+.+++.+..+ .+|..+|.+++|+|++++|++++.|+ .|++||+.. +.
T Consensus 190 v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~ 267 (393)
T d1sq9a_ 190 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GE 267 (393)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CC
T ss_pred EEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccc-ce
Confidence 4688987 8899999999999999988766543 46889999999999999999999887 499999975 34
Q ss_pred cccee-------------eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCccee----EEEeeC
Q 029743 72 CSDRF-------------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE----SLALSH 133 (188)
Q Consensus 72 ~~~~~-------------~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~----~~~~~~ 133 (188)
.+..+ .+ |...|+++ |+|++++|++++.|++|++||+++++++.++.+|.+ .|. .++|+|
T Consensus 268 ~~~~l~~~~~~~~~~~~~~g-H~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~-~v~~~~~~~~~~~ 345 (393)
T d1sq9a_ 268 RIGSLSVPTHSSQASLGEFA-HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD-DIEIEEDILAVDE 345 (393)
T ss_dssp EEEEECBC--------CCBS-BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG-GCSSGGGCCCBCT
T ss_pred eeeeeccccccccceeeeec-ccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC-cccCCccEEEECC
Confidence 44433 47 88999999 899999999999999999999999999999999965 565 478888
Q ss_pred CCCEEEEEe
Q 029743 134 DRKFLGSIS 142 (188)
Q Consensus 134 ~~~~l~~~~ 142 (188)
++..+++++
T Consensus 346 ~~~~~~~~~ 354 (393)
T d1sq9a_ 346 HGDSLAEPG 354 (393)
T ss_dssp TSCBCSSCC
T ss_pred CCCEEEEcc
Confidence 888775443
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=8.6e-26 Score=164.62 Aligned_cols=149 Identities=18% Similarity=0.240 Sum_probs=119.3
Q ss_pred cCeEEEEeCCCcEEEEEcCCCc------------------eeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCC
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNT------------------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 68 (188)
++++++++.|+.+++|++.... .......+...+.+++|+|++ +|++|+.|+.|++||+..
T Consensus 136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~ 214 (393)
T d1sq9a_ 136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST 214 (393)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence 5788999999999999974311 111122345668899999987 889999999999999976
Q ss_pred ccccc------ceeeeccCCceeEE-eecCCCEEEEecCCC---eEEEEecccCeeeeecc-------------cCCCcc
Q 029743 69 FKDCS------DRFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIA-------------EHSEYP 125 (188)
Q Consensus 69 ~~~~~------~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~v~~~d~~~~~~~~~~~-------------~~~~~~ 125 (188)
. +++ ..+.+ |..+|.++ |+|+|++|++|+.|+ .|++||+++++++..+. +|.+ .
T Consensus 215 ~-~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-~ 291 (393)
T d1sq9a_ 215 L-RPLYNFESQHSMIN-NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-W 291 (393)
T ss_dssp T-EEEEEEECCC---C-CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-C
T ss_pred c-cccccccccccccc-ccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccC-c
Confidence 3 333 33456 88899999 899999999999886 49999999888776653 6766 7
Q ss_pred eeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 126 IESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 126 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
|++++|+|++++|++++.|++|++||++++....
T Consensus 292 V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~ 325 (393)
T d1sq9a_ 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 325 (393)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred eeeeccCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence 9999999999999999999999999999876543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=5.6e-25 Score=153.54 Aligned_cols=148 Identities=20% Similarity=0.262 Sum_probs=122.6
Q ss_pred eeecccCeEEEEeCCC-cEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAMKLLGTSGDG-TLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+++|+++.+++++.++ .+++|++........+. .|...+++++|+|++.+|++++.|+.|++||+.........+..
T Consensus 125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~- 203 (287)
T d1pgua2 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF- 203 (287)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-
T ss_pred eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc-
Confidence 4678888888888765 79999987665544443 57788999999999999999999999999999864444445667
Q ss_pred cCCceeEE-eec----------CCCEEEEecCCCeEEEEeccc-CeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcE
Q 029743 80 SPNSVDAL-LKL----------DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (188)
Q Consensus 80 ~~~~v~~~-~~~----------~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 147 (188)
|...+.++ |+| ++.++++|+.|+.|++||++. .+.+..+.+|.. .|++++|+|++ .|++++.|+.|
T Consensus 204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~-~V~~v~~~~~~-~l~s~g~D~~v 281 (287)
T d1pgua2 204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPS-TLVSSGADACI 281 (287)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETT-EEEEEETTSCE
T ss_pred cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC-CeEEEEECCCC-EEEEEECCCeE
Confidence 88889998 765 456899999999999999976 556777888876 89999999986 58899999999
Q ss_pred EEEeC
Q 029743 148 KLWDL 152 (188)
Q Consensus 148 ~iwd~ 152 (188)
++|++
T Consensus 282 ~iW~i 286 (287)
T d1pgua2 282 KRWNV 286 (287)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=7.5e-25 Score=155.95 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=130.3
Q ss_pred CeeecccCeEEEEeC--CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCE-EEEecCCCeEEEEEeCCcccc--cce
Q 029743 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFKDC--SDR 75 (188)
Q Consensus 1 l~~s~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~--~~~ 75 (188)
++|+|++++|++++. ++.+++|+..+++.+..+.+|...|.+++|+|++.. +++++.|+.+++|++...... ...
T Consensus 121 v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~ 200 (325)
T d1pgua1 121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT 200 (325)
T ss_dssp EEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred EEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc
Confidence 468999999987764 678999999999999999999999999999998865 678999999999998653211 122
Q ss_pred eeeccCCceeEE-eecC-CCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEee---CCCCEEEEEeCCCcEEEE
Q 029743 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS---HDRKFLGSISHDSMLKLW 150 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~iw 150 (188)
... +...+.++ |+|+ +.++++++.|+.|++||+++++.+..+.+|.. ++..+.|+ |++++|++++.|+.|+||
T Consensus 201 ~~~-~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iw 278 (325)
T d1pgua1 201 HHK-QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVW 278 (325)
T ss_dssp SSC-TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEE
T ss_pred ccC-CCCccEEeeeccccceeccccccccceeeeeecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEEE
Confidence 334 67779999 8996 67899999999999999999999999998865 67666665 689999999999999999
Q ss_pred eCCCccCC
Q 029743 151 DLDDILKG 158 (188)
Q Consensus 151 d~~~~~~~ 158 (188)
|+++.+..
T Consensus 279 d~~~~~~~ 286 (325)
T d1pgua1 279 DVTTSKCV 286 (325)
T ss_dssp ETTTTEEE
T ss_pred ECCCCCEE
Confidence 99986643
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.4e-24 Score=155.78 Aligned_cols=155 Identities=18% Similarity=0.267 Sum_probs=128.2
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++|+|++++|++|+.|+.|++|+...++.+....+|...|.++.+++++..+++++.++.+++||+.. ......... +
T Consensus 127 l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~-~ 204 (388)
T d1erja_ 127 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLSI-E 204 (388)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEEC-S
T ss_pred EEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc-ccccccccc-c
Confidence 47999999999999999999999999999999999999999999999999999999999999999976 344444444 4
Q ss_pred CCceeEEe-ecCCCEEEEecCCCeEEEEecccCeeeeec-------ccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI-------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
...+...+ .+++.+|++++.|+.|++|+++++.....+ .+|.. .|.+++|+|++++|++++.|+.|++||+
T Consensus 205 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~d~~i~iwd~ 283 (388)
T d1erja_ 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNL 283 (388)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCC-CEEEEEECCCCCEEEEEECCCcEEEEec
Confidence 44444445 568999999999999999999988766554 34544 7999999999999999999999999999
Q ss_pred CCccCC
Q 029743 153 DDILKG 158 (188)
Q Consensus 153 ~~~~~~ 158 (188)
.+....
T Consensus 284 ~~~~~~ 289 (388)
T d1erja_ 284 QNANNK 289 (388)
T ss_dssp ------
T ss_pred cCCccc
Confidence 876543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.5e-24 Score=152.25 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=121.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc-----------
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK----------- 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----------- 70 (188)
++++++++|++|+.|++|+|||+.+++++..+.+|..+|.+++|+|+ .+|++++.|+.|++|++....
T Consensus 18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~ 96 (355)
T d1nexb2 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNST 96 (355)
T ss_dssp EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccc
Confidence 46788999999999999999999999999999999999999999985 578888888888887764320
Q ss_pred --------------------------------------------------------------------------------
Q 029743 71 -------------------------------------------------------------------------------- 70 (188)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (188)
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (355)
T d1nexb2 97 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176 (355)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEE
T ss_pred ccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeee
Confidence
Q ss_pred ---------------cccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCC
Q 029743 71 ---------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD 134 (188)
Q Consensus 71 ---------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 134 (188)
+.+....+ +...+.++ ++|++.++++++.|+.|++|+++++.++..+.+|.. .|.+++++
T Consensus 177 ~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~~-- 252 (355)
T d1nexb2 177 GSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA-LVGLLRLS-- 252 (355)
T ss_dssp EETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CCCEEEEC--
T ss_pred ecccceeeeeecccccceeeeec-cccccccccccccceeeecccccceEEeeeccccccccccccccc-cccccccc--
Confidence 00000011 22334445 688899999999999999999999999999999976 89999886
Q ss_pred CCEEEEEeCCCcEEEEeCCCccC
Q 029743 135 RKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
+++|++++.||.|++||+++...
T Consensus 253 ~~~l~~~~~dg~i~iwd~~~~~~ 275 (355)
T d1nexb2 253 DKFLVSAAADGSIRGWDANDYSR 275 (355)
T ss_dssp SSEEEEECTTSEEEEEETTTCCE
T ss_pred cceeeeeecccccccccccccce
Confidence 46899999999999999987653
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4e-24 Score=151.25 Aligned_cols=147 Identities=17% Similarity=0.264 Sum_probs=121.1
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.++++++++++++.|+.|++||++.++.+..+.+|...+.++.++ +++|++++.|+.|++||+.. ......+.. +.
T Consensus 182 ~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~-~~ 257 (342)
T d2ovrb2 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKT-GQCLQTLQG-PN 257 (342)
T ss_dssp EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCEEEEECS-TT
T ss_pred cccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccc-ccccccccc-cc
Confidence 356789999999999999999999999999999999999887775 56999999999999999976 344445544 33
Q ss_pred ---CceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecc-----cCCCcceeEEEeeCCCCEEEEEeCCCc----EEE
Q 029743 82 ---NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA-----EHSEYPIESLALSHDRKFLGSISHDSM----LKL 149 (188)
Q Consensus 82 ---~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~----i~i 149 (188)
..+.+ +.++++++++++.||.|++||++++++++.+. +|.. .|++++|+|++.+|++|+.||+ |++
T Consensus 258 ~~~~~~~~-~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~-~v~~v~~s~~~~~la~g~~dGt~~~~l~~ 335 (342)
T d2ovrb2 258 KHQSAVTC-LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG-VVWRIRASNTKLVCAVGSRNGTEETKLLV 335 (342)
T ss_dssp SCSSCEEE-EEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC-EEEEEEECSSEEEEEEECSSSSSCCEEEE
T ss_pred eeeeceee-cccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCC-CEEEEEECCCCCEEEEEeCCCCCeeEEEE
Confidence 33333 35567899999999999999999999887763 3434 7999999999999999998885 999
Q ss_pred EeCCC
Q 029743 150 WDLDD 154 (188)
Q Consensus 150 wd~~~ 154 (188)
||++.
T Consensus 336 ~Df~~ 340 (342)
T d2ovrb2 336 LDFDV 340 (342)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99874
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.7e-24 Score=153.06 Aligned_cols=150 Identities=11% Similarity=0.109 Sum_probs=119.0
Q ss_pred CeeecccCe-EEEEeCCCcEEEEEcCCCceeeee---cccccceEEEEEEeC-CCEEEEecCCCeEEEEEeCCcccccce
Q 029743 1 MTFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 1 l~~s~~~~~-l~~~~~d~~i~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~ 75 (188)
++|+|++.+ +++++.|+.+++|+....+....+ ..|...|.+++|+|+ +.+|++++.|+.|++||+++ ++.+..
T Consensus 165 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-~~~~~~ 243 (325)
T d1pgua1 165 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKY 243 (325)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEE
T ss_pred ccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc-cccccc
Confidence 468898876 677899999999999876654443 367788999999996 68899999999999999986 577778
Q ss_pred eeeccCCceeEE-e---ecCCCEEEEecCCCeEEEEecccCeeeeecccCCC-cceeEEEeeCC-CCEEEEEeCCCcEEE
Q 029743 76 FVGLSPNSVDAL-L---KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLALSHD-RKFLGSISHDSMLKL 149 (188)
Q Consensus 76 ~~~~~~~~v~~~-~---~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~-~~~l~~~~~d~~i~i 149 (188)
+.+ |..++..+ | .|+|++|++++.|+.|+|||+++++++..+..+.. ..+..+++.+. +.+|++++.||.|++
T Consensus 244 l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~v 322 (325)
T d1pgua1 244 IED-DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322 (325)
T ss_dssp CCB-TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred ccc-cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEE
Confidence 887 77766544 4 48999999999999999999999999888766543 12334444432 347889999999999
Q ss_pred EeC
Q 029743 150 WDL 152 (188)
Q Consensus 150 wd~ 152 (188)
||+
T Consensus 323 wdl 325 (325)
T d1pgua1 323 YEL 325 (325)
T ss_dssp EET
T ss_pred EEC
Confidence 996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.7e-23 Score=143.97 Aligned_cols=148 Identities=19% Similarity=0.259 Sum_probs=105.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc----------
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---------- 71 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---------- 71 (188)
++++++++|++|+.|++|+|||+.+++++..+.+|...|.+++| ++++|++++.|+.|++|++.....
T Consensus 20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~ 97 (293)
T d1p22a2 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA 97 (293)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC
T ss_pred EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccc
Confidence 57889999999999999999999999999999999999999887 678999999999999999864300
Q ss_pred ------------------------------------------------------------------------ccceeeec
Q 029743 72 ------------------------------------------------------------------------CSDRFVGL 79 (188)
Q Consensus 72 ------------------------------------------------------------------------~~~~~~~~ 79 (188)
.+..+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~- 176 (293)
T d1p22a2 98 VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG- 176 (293)
T ss_dssp EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC-
T ss_pred cccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcc-
Confidence 0000011
Q ss_pred cCCceeEEeecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
+...+.. +.+++.++++++.|+.|++||+++...+..+.++.. .+. .+.+++.+|++++.||.|++||+....
T Consensus 177 ~~~~v~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~ 249 (293)
T d1p22a2 177 HKRGIAC-LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAAL 249 (293)
T ss_dssp CSSCEEE-EEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred ccccccc-ccCCCCeEEEecCCCEEEEEecccceeeeeecccce-eee--eccccceEEEEEcCCCEEEEEECCCCc
Confidence 1111111 133455677777777777777777777766666643 444 345566777777778888888776543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.3e-23 Score=148.36 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=109.3
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCcee---eeecccccceEEEEEEeCC-CEEEEecCCCeEEEEEeCCccccccee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ---TRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~ 76 (188)
|+|+|++++|++|+.|++|+|||+..+... ....+|..+|.+++|+|++ .+|++|+.|+.|++|++.... .....
T Consensus 17 l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~-~~~~~ 95 (342)
T d1yfqa_ 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP-SFQAL 95 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS-SEEEC
T ss_pred EEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc-ccccc
Confidence 589999999999999999999999765432 2233699999999999965 578999999999999986421 11110
Q ss_pred eec------------------------------------------------cCCceeEE-eecCCCEEEEecCCCeEEEE
Q 029743 77 VGL------------------------------------------------SPNSVDAL-LKLDEDRVITGSENGLISLV 107 (188)
Q Consensus 77 ~~~------------------------------------------------~~~~v~~~-~~~~~~~l~~~~~d~~v~~~ 107 (188)
... ........ +.+.+..+++++.|+.|++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 175 (342)
T d1yfqa_ 96 TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175 (342)
T ss_dssp BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEE
T ss_pred cccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEE
Confidence 000 00011112 34566677777778888888
Q ss_pred ecccCeeee-------------------------------------------------------------ecccCCCcce
Q 029743 108 GILPNRIIQ-------------------------------------------------------------PIAEHSEYPI 126 (188)
Q Consensus 108 d~~~~~~~~-------------------------------------------------------------~~~~~~~~~v 126 (188)
+++...... ....|. ..|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 254 (342)
T d1yfqa_ 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA-YPV 254 (342)
T ss_dssp ESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC-CCE
T ss_pred ecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccc-ccc
Confidence 764321000 001121 257
Q ss_pred eEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 127 ESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 127 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
.+++|+|++++|++|+.||.|++||+++.....
T Consensus 255 ~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~ 287 (342)
T d1yfqa_ 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred eeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence 899999999999999999999999999876543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.1e-22 Score=143.74 Aligned_cols=148 Identities=19% Similarity=0.224 Sum_probs=119.3
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc----------
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---------- 71 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---------- 71 (188)
+++++|++|++|+.|++|+|||+.+++++..+.+|...|.+++|+|+ +|++++.|+.+++|+......
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~ 99 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTST 99 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceeccccccee
Confidence 47889999999999999999999999999999999999999999864 899999999999988653200
Q ss_pred ---------------------------------------------------------------------ccceeeeccCC
Q 029743 72 ---------------------------------------------------------------------CSDRFVGLSPN 82 (188)
Q Consensus 72 ---------------------------------------------------------------------~~~~~~~~~~~ 82 (188)
.+..+.+ |.
T Consensus 100 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~- 177 (342)
T d2ovrb2 100 VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG-HT- 177 (342)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECC-CS-
T ss_pred EeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcC-cc-
Confidence 0000011 11
Q ss_pred ceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
.... +.+++.++++++.||.|++||++.++++..+.+|.. .+.+++++ +++|++++.|+.|++||+.....
T Consensus 178 -~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~ 249 (342)
T d2ovrb2 178 -NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQC 249 (342)
T ss_dssp -SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCE
T ss_pred -cccccccCCCCEEEEEeCCCeEEEeecccceeeeEeccccc-ceeEEecC--CCEEEEEcCCCEEEEEecccccc
Confidence 1122 356788999999999999999999999999998866 78877775 46899999999999999987653
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=1.5e-23 Score=149.91 Aligned_cols=151 Identities=11% Similarity=0.078 Sum_probs=127.1
Q ss_pred eeec-ccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCC--eEEEEEeCCcccccceeee
Q 029743 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~ 78 (188)
.||| ||+++|+++. +.|++||+..+..++. .|...|.+++|+|||+.|++++.+. .|++||+.. .....+..
T Consensus 9 ~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~--~~~~~~~~ 83 (360)
T d1k32a3 9 DFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEE 83 (360)
T ss_dssp EEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT--CCEEECCC
T ss_pred cccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC--CcEEEeeC
Confidence 5999 9999999875 7999999988877653 5899999999999999998776553 799999974 44556677
Q ss_pred ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe----------CCCcE
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS----------HDSML 147 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i 147 (188)
|...+.++ |+|+|++|++++.++.+++|++.+++....+..+.. .+.+++|+|+|++|+.+. .++.+
T Consensus 84 -~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~ 161 (360)
T d1k32a3 84 -NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161 (360)
T ss_dssp -CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred -CCceEEeeeecccccccceeccccccccccccccceeeeeecccc-cccchhhccceeeeeeeccccccceeeccccce
Confidence 88899999 899999999999999999999999998888887755 789999999999998553 34569
Q ss_pred EEEeCCCccCCC
Q 029743 148 KLWDLDDILKGS 159 (188)
Q Consensus 148 ~iwd~~~~~~~~ 159 (188)
++|++.+.....
T Consensus 162 ~v~d~~~~~~~~ 173 (360)
T d1k32a3 162 HVYDMEGRKIFA 173 (360)
T ss_dssp EEEETTTTEEEE
T ss_pred eeeccccCceee
Confidence 999999865433
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=8e-23 Score=145.15 Aligned_cols=142 Identities=12% Similarity=0.234 Sum_probs=117.4
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
.|+|+++++++++.|+.|++|++.++..+..+.+|...|.+++++ +++|++++.|+.|++||++.. .+.+.. |.
T Consensus 208 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~ 281 (355)
T d1nexb2 208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY---SRKFSY-HH 281 (355)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTC---CEEEEE-EC
T ss_pred cccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccc---ceeccc-cc
Confidence 578999999999999999999999999999999999999999885 579999999999999999753 334555 66
Q ss_pred CceeEE--eecCCCEEEEecCCCeEEEEecccCeeee-ecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeC
Q 029743 82 NSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (188)
Q Consensus 82 ~~v~~~--~~~~~~~l~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (188)
..+.++ ++++++++++| .|+.|++||+++++++. .+.+|.+ +|.+++|+|+ ..+++++.||.++||.+
T Consensus 282 ~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~-~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 282 TNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDAD-QIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp TTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCS-EEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCC-CEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 666666 46777776665 58899999999999875 4667766 8999999986 47778889998776643
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=2.2e-21 Score=138.41 Aligned_cols=150 Identities=12% Similarity=0.031 Sum_probs=124.8
Q ss_pred CeeecccCeEEEEeCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|||||++|++++.+. .|++||..+++.. .+..|...+.+++|+|++++|++++.++.+++|++.. +.....+..
T Consensus 48 ~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~-~~~~~~~~~ 125 (360)
T d1k32a3 48 VRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERS 125 (360)
T ss_dssp EEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC
T ss_pred EEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccc-cceeeeeec
Confidence 47999999998876553 7899999887765 5567899999999999999999999999999999976 566666777
Q ss_pred ccCCceeEE-eecCCCEEEEec----------CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcE
Q 029743 79 LSPNSVDAL-LKLDEDRVITGS----------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~----------~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 147 (188)
+...+.++ |+|+|++|+.+. .++.+++|++.+++.......+ . .+..++|+|+|++|++++.++.+
T Consensus 126 -~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~~~s~~~~~ 202 (360)
T d1k32a3 126 -REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN-S-HDYAPAFDADSKNLYYLSYRSLD 202 (360)
T ss_dssp -SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSS-S-BEEEEEECTTSCEEEEEESCCCC
T ss_pred -ccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccc-c-ccccccccCCCCEEEEEeCCCce
Confidence 77788888 899999998543 3456899999988776554433 4 68899999999999999999999
Q ss_pred EEEeCCCc
Q 029743 148 KLWDLDDI 155 (188)
Q Consensus 148 ~iwd~~~~ 155 (188)
.+|+....
T Consensus 203 ~~~d~~~~ 210 (360)
T d1k32a3 203 PSPDRVVL 210 (360)
T ss_dssp CEECSSSS
T ss_pred Eccccccc
Confidence 99997654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.4e-20 Score=128.92 Aligned_cols=140 Identities=23% Similarity=0.374 Sum_probs=116.2
Q ss_pred ecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc
Q 029743 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (188)
Q Consensus 4 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 83 (188)
.+....+++++.|+.|++|+..+++.+..+.++...+..+.++ +..+++++.|+.|++||++. ...+..... +...
T Consensus 145 ~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~-~~~~ 220 (293)
T d1p22a2 145 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-GACLRVLEG-HEEL 220 (293)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCEEEEECC-CSSC
T ss_pred eecccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEeccc-ceeeeeecc-ccee
Confidence 3456678889999999999999999998998888888887764 67899999999999999986 466666666 6665
Q ss_pred eeEEeecCCCEEEEecCCCeEEEEecccC---------eeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEe
Q 029743 84 VDALLKLDEDRVITGSENGLISLVGILPN---------RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (188)
Q Consensus 84 v~~~~~~~~~~l~~~~~d~~v~~~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 151 (188)
+.. +++++.+|++++.||.|++||+... .++..+.+|.+ .|++++|+ +.+|++++.|++|++||
T Consensus 221 v~~-~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~-~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 221 VRC-IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEE-EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred eee-ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC-CEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 543 5678889999999999999998642 35677888876 89999984 67899999999999998
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.84 E-value=8.8e-21 Score=139.35 Aligned_cols=78 Identities=5% Similarity=-0.049 Sum_probs=58.9
Q ss_pred cCCceeEE-eecCCCEEEE-------ecCCCeEEEEecccCeeeeec---------ccCCCcceeEEEeeCCCCEEEEE-
Q 029743 80 SPNSVDAL-LKLDEDRVIT-------GSENGLISLVGILPNRIIQPI---------AEHSEYPIESLALSHDRKFLGSI- 141 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~-------~~~d~~v~~~d~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~- 141 (188)
|...+..+ ++|++++|++ +..+++|++||+++++...++ ..+.. .|..++|+|||++++.+
T Consensus 302 ~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~-rv~~~~fSpDGk~i~vs~ 380 (426)
T d1hzua2 302 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK-RVVQPEYNKRGDEVWFSV 380 (426)
T ss_dssp SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC-CEEEEEECSSSSEEEEEE
T ss_pred CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCc-cEEEEEECCCCCEEEEEE
Confidence 55667777 7999999995 445789999999988765443 22323 68899999999977432
Q ss_pred ----eCCCcEEEEeCCCccCC
Q 029743 142 ----SHDSMLKLWDLDDILKG 158 (188)
Q Consensus 142 ----~~d~~i~iwd~~~~~~~ 158 (188)
+.++.|+|||.++.+..
T Consensus 381 ~~~~~~~~~i~v~D~~T~k~~ 401 (426)
T d1hzua2 381 WNGKNDSSALVVVDDKTLKLK 401 (426)
T ss_dssp CCCTTSCCEEEEEETTTTEEE
T ss_pred ecCCCCCCeEEEEECCCCeEE
Confidence 35788999999998643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=1.3e-18 Score=120.92 Aligned_cols=134 Identities=11% Similarity=0.144 Sum_probs=96.6
Q ss_pred cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCC-eEEEEEeCCcccccceeeeccCCceeEE-eecCCCEE
Q 029743 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRV 95 (188)
Q Consensus 18 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l 95 (188)
.+.+|+...++.+..+.. .. ...++++++..+++++.++ .+++|++............ +...+.++ |+|++.+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l 177 (287)
T d1pgua2 102 DLLILQSFTGDIIKSVRL-NS--PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYI 177 (287)
T ss_dssp EEEEEETTTCCEEEEEEC-SS--CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEE
T ss_pred cceeeeccceeeeeeccc-cc--eeeeeeccCcceeeeccccceeeeeeccccceeeeeeec-cCCceeEEEeccCcccc
Confidence 344444444444433332 22 2345677888888777664 7999998653222222334 67789999 89999999
Q ss_pred EEecCCCeEEEEecccCeeee-ecccCCCcceeEEEeeCC----------CCEEEEEeCCCcEEEEeCCCcc
Q 029743 96 ITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHD----------RKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 96 ~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~----------~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
++|+.+|.|++||+.++.... .+.+|.. +|.+++|+|. +.+|++++.|+.|++||+++..
T Consensus 178 ~~g~~dg~i~i~d~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~ 248 (287)
T d1pgua2 178 AAGDVMGKILLYDLQSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 248 (287)
T ss_dssp EEEETTSCEEEEETTTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred ccccccccccceeeccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence 999999999999999887654 4667765 8999999874 4689999999999999997643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=4.6e-19 Score=125.50 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=59.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGY 68 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~ 68 (188)
++|++++++|++++.+++|++||+.+++.+..++ .+...+.+++|+|||++++ ++..++.|.+||+.+
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t 71 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT 71 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc
Confidence 5799999999999999999999999999988876 4566788999999999875 556789999999864
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=7.5e-19 Score=123.52 Aligned_cols=128 Identities=9% Similarity=0.090 Sum_probs=102.1
Q ss_pred ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc--ccceeeeccCCceeEE-eecC-CCEEEEecCCCe
Q 029743 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGL 103 (188)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~ 103 (188)
+.++..++|.+.|++|+|+|++++|++++.|++|++||++.... .+....+ |..+|.++ |+|+ +.++++|+.|+.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecC-CCCCEEEEEEeCCCCCEEEEcccccc
Confidence 35566779999999999999999999999999999999975322 2233346 88999999 8875 558999999999
Q ss_pred EEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCcc
Q 029743 104 ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (188)
Q Consensus 104 v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (188)
|++|++...........+.........+.++...+++++.++.+++||++...
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~ 133 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred eeeeecccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence 99999988776666555544344556667788899999999999999987543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=3.3e-18 Score=125.82 Aligned_cols=145 Identities=10% Similarity=0.020 Sum_probs=111.9
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc-ccee---eeccCCcee
Q 029743 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-SDRF---VGLSPNSVD 85 (188)
Q Consensus 10 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~---~~~~~~~v~ 85 (188)
+++.+.+++|.|||..+++.+..++.+ ..+..++|+|||+++++++.|+.+++||+.+.... ...+ .. +...+.
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~-~~~~~~ 112 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIET 112 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEE
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC-CCCeEE
Confidence 578888999999999999999999866 46999999999999999999999999999764322 1222 23 334444
Q ss_pred EE-eecCCCEE-EEecCCCeEEEEecccCeeeeecccCC----------CcceeEEEeeCCCCEEE-EEeCCCcEEEEeC
Q 029743 86 AL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHS----------EYPIESLALSHDRKFLG-SISHDSMLKLWDL 152 (188)
Q Consensus 86 ~~-~~~~~~~l-~~~~~d~~v~~~d~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~ 152 (188)
+. |+|||++| +++..++.|++||..+++++..+..+. ......+.++|++..++ +...++.|.+|+.
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 44 68899986 667789999999999988776654321 12456788999998764 5556799999998
Q ss_pred CCcc
Q 029743 153 DDIL 156 (188)
Q Consensus 153 ~~~~ 156 (188)
.+..
T Consensus 193 ~~~~ 196 (432)
T d1qksa2 193 TDLN 196 (432)
T ss_dssp TCSS
T ss_pred cCCC
Confidence 7654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=1.6e-18 Score=127.51 Aligned_cols=156 Identities=12% Similarity=0.016 Sum_probs=113.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCce--eeee---cccccceEEEEEEeCCCEE-EEecCCCeEEEEEeCCcccccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRS---EFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~ 74 (188)
++|||||+++++++.|+.+++||+.+++. ...+ ..|...+.++.|+|||++| +++..++.+++||..+ ++.+.
T Consensus 67 v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t-~~~~~ 145 (432)
T d1qksa2 67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKK 145 (432)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEEE
T ss_pred EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc-cccee
Confidence 47999999999999999999999987653 2222 3455666777788899986 6778899999999976 45544
Q ss_pred eeee----------ccCCceeEE-eecCCCEE-EEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEe
Q 029743 75 RFVG----------LSPNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 75 ~~~~----------~~~~~v~~~-~~~~~~~l-~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
.+.. .+......+ ++|+|.++ ++...++.|.+|+..+.+.......+.+..+..++|+|+|+++++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~ 225 (432)
T d1qksa2 146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA 225 (432)
T ss_dssp EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred eeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEec
Confidence 4432 022334455 78988875 45667899999998876644333222233688999999999887766
Q ss_pred -CCCcEEEEeCCCccC
Q 029743 143 -HDSMLKLWDLDDILK 157 (188)
Q Consensus 143 -~d~~i~iwd~~~~~~ 157 (188)
.++.+.++|..+...
T Consensus 226 ~~~~~v~v~d~~~~~~ 241 (432)
T d1qksa2 226 NARNKLVVIDTKEGKL 241 (432)
T ss_dssp GGGTEEEEEETTTTEE
T ss_pred cccceEEEeecccceE
Confidence 456899999887543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.76 E-value=7.7e-18 Score=123.50 Aligned_cols=143 Identities=7% Similarity=0.025 Sum_probs=102.3
Q ss_pred eEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccc--ee---eeccCCc
Q 029743 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--RF---VGLSPNS 83 (188)
Q Consensus 9 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~---~~~~~~~ 83 (188)
++++...|++|+|||+.+++.+..++.+ ..+..++|+|||++|++++.|+.+++||+.+. .... .+ .+ |...
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~-~~~~~~~i~~~~~-~~~~ 110 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAK-EPTKVAEIKIGIE-ARSV 110 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSS-SCEEEEEEECCSE-EEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCC-ceeEEEEEeCCCC-Ccce
Confidence 4567778999999999999999999866 46899999999999999999999999999763 3222 22 23 3344
Q ss_pred eeEE-eecCCCEEEEe-cCCCeEEEEecccCeeeeecccCCC----------cceeEEEeeCCCCEEEEEeC-CCcEEEE
Q 029743 84 VDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSE----------YPIESLALSHDRKFLGSISH-DSMLKLW 150 (188)
Q Consensus 84 v~~~-~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~-d~~i~iw 150 (188)
+.++ |+|||++++++ ..++.+++||..++.+...+..+.. .....+.+++++..++.... .+.+.++
T Consensus 111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~ 190 (426)
T d1hzua2 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 190 (426)
T ss_dssp EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 4455 68999987655 4789999999999887766654422 12344556666665554433 3455555
Q ss_pred eCCC
Q 029743 151 DLDD 154 (188)
Q Consensus 151 d~~~ 154 (188)
+...
T Consensus 191 ~~~~ 194 (426)
T d1hzua2 191 NYKD 194 (426)
T ss_dssp ECSS
T ss_pred Eecc
Confidence 5444
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=4.2e-17 Score=114.86 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=57.2
Q ss_pred eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCCCCC
Q 029743 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 88 ~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (188)
++|++.+++.+ ++.|++||+.+++.+..+... . .+.+++|+|||++|++++.++.|++||+++.+....+.
T Consensus 248 ~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 248 VNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-H-SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp ECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred ecccceEEEEc--cccEEEEECCCCcEEEEEcCC-C-CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence 45666666554 478999999999988887644 3 68999999999999999999999999999877654443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=5.5e-17 Score=114.24 Aligned_cols=143 Identities=15% Similarity=0.064 Sum_probs=113.7
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeecc--cccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccceeeeccC---
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLSP--- 81 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~--- 81 (188)
+++++++.|++|+|||+++++.+..++. +...+.+++|+|||++++ +++.++.|.+||+.+ ++.+..+.. +.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~-~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDL-STPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEEC-CBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC-CcEEEEEec-CCCcc
Confidence 5899999999999999999999888764 345678999999999874 667889999999987 455555543 32
Q ss_pred --CceeEE-eecCCCEEEEec------------CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCc
Q 029743 82 --NSVDAL-LKLDEDRVITGS------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (188)
Q Consensus 82 --~~v~~~-~~~~~~~l~~~~------------~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 146 (188)
..+..+ ++|++++++++. .+..+.+||..+++....+..+ . .+..++|+|+++++++++. .
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~--~ 155 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-R-QITMLAWARDGSKLYGLGR--D 155 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-S-SCCCEEECTTSSCEEEESS--S
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-C-CceEEEEcCCCCEEEEEcC--C
Confidence 223455 799999988775 3567889999999988888765 3 5889999999999988864 4
Q ss_pred EEEEeCCCcc
Q 029743 147 LKLWDLDDIL 156 (188)
Q Consensus 147 i~iwd~~~~~ 156 (188)
+.+||..+..
T Consensus 156 ~~~~d~~~~~ 165 (337)
T d1pbyb_ 156 LHVMDPEAGT 165 (337)
T ss_dssp EEEEETTTTE
T ss_pred cceeeeecCc
Confidence 7789988764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.73 E-value=6.4e-16 Score=107.24 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=115.6
Q ss_pred CeeecccCeEEEE-eCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-CeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|+|+++.++.+ ..+..+.+|+..++.....+.. ...+..++++|+++.+++++.+ +.+.+|+... ......+..
T Consensus 121 ~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 198 (301)
T d1l0qa2 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVKV 198 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC
T ss_pred EEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEeeccccceeeecccccccccccccc-eeeeecccc
Confidence 3688999987655 4578899999999888777764 4567899999999988877665 5566666553 344444443
Q ss_pred ccCCceeEE-eecCCCEEEEec---CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE-EEEeCCCcEEEEeCC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGS---ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLD 153 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~---~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~ 153 (188)
+ ..+..+ +++++..++++. .++.|++||+.+++.+..+..+ . .+.+++|+|||++| ++++.++.|++||++
T Consensus 199 -~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~-~~~~va~spdg~~l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 199 -E-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-P-DPAGIAVTPDGKKVYVALSFCNTVSVIDTA 274 (301)
T ss_dssp -S-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-S-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred -c-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-C-CEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 3 344555 899999876654 4568999999999988887765 3 58999999999987 567789999999999
Q ss_pred CccCCC
Q 029743 154 DILKGS 159 (188)
Q Consensus 154 ~~~~~~ 159 (188)
+++...
T Consensus 275 t~~~~~ 280 (301)
T d1l0qa2 275 TNTITA 280 (301)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 876543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.69 E-value=4.1e-15 Score=103.10 Aligned_cols=142 Identities=17% Similarity=0.177 Sum_probs=112.6
Q ss_pred EEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccceeeeccCCceeEE-e
Q 029743 11 LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-L 88 (188)
Q Consensus 11 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~ 88 (188)
++.+.+++|.+||+++++.++.++. ...+..++|+|+|++|+ ++..++.|++||+.+ +..+..+.. +.. +..+ +
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~~-~~~-~~~~~~ 81 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPA-GSS-PQGVAV 81 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEEC-SSS-EEEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-Cceeeeeec-ccc-cccccc
Confidence 3456789999999999999888874 35678999999999874 667889999999986 566777765 554 4556 8
Q ss_pred ecCCCEEE-EecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEE-EEeCCCcEEEEeCCCccCC
Q 029743 89 KLDEDRVI-TGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG-SISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 89 ~~~~~~l~-~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~ 158 (188)
++++..++ ++..++.+.+|+..+++....+..+. .+..+.|+|+++.++ ++..++.+.+|+..+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 151 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccccccccccccccceeeecccccceeeeeccccc--cceEEEeecCCCeeeeeeccccceeeeecccccee
Confidence 99888655 55677889999999999888887663 578899999999875 4556788999999876543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.4e-14 Score=101.81 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=102.5
Q ss_pred EEEEeCCCcEEEEEcCCCceeeee--cccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeCCccccccee--eeccCCce
Q 029743 10 LLGTSGDGTLSVCNLRKNTVQTRS--EFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRF--VGLSPNSV 84 (188)
Q Consensus 10 l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~--~~~~~~~v 84 (188)
+++++.+++|++|++.....+..+ ..|...+..++|+|||++|+++ ..++.|++|++......+... .. ....+
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-~~~~p 85 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-LPGSL 85 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-CSSCC
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc-cCCCc
Confidence 466678999999999754332222 2577899999999999998655 458999999997543322221 22 34456
Q ss_pred eEE-eecCCCEEEEec-CCCeEEEEecccCeeeee--cccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCCc
Q 029743 85 DAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (188)
Q Consensus 85 ~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (188)
..+ ++|+|++|++++ .++.|.+|+......... ...+.. .+.++.++|++++++.++ .+..|.+|+....
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~ 160 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDD 160 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCc-cceEEEeeecceeeeccccccceeeEEEeccC
Confidence 667 899999998887 477899998876554333 223333 678899999999888776 4567899987654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.57 E-value=3.3e-13 Score=96.36 Aligned_cols=64 Identities=9% Similarity=0.083 Sum_probs=50.8
Q ss_pred EecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE--EEEEeCCCcEEEEeCCCccCCCCCC
Q 029743 97 TGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF--LGSISHDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 97 ~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (188)
....++.+.+||..+++.+..+... . .+..++|+|||+. +++++.|+.|++||+.+++....+.
T Consensus 293 ~~~~~~~v~~~d~~t~~~~~~~~~~-~-~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 293 LHAAAKEVTSVTGLVGQTSSQISLG-H-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred eecCCCeEEEEECCCCcEEEEecCC-C-CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence 4455667899999999988887654 3 6899999999985 3578899999999999987655443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.54 E-value=1e-13 Score=102.45 Aligned_cols=146 Identities=12% Similarity=0.018 Sum_probs=106.6
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeec-----ccccceEEEEEEeCCCEEEEecC---------CCeEEEEEe
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-----FSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSW 66 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~ 66 (188)
+.|.++++++.. .++.+.+||+.+++....+. .|...|.++.|+|||++|+.++. ++.+.+||+
T Consensus 22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~ 99 (470)
T d2bgra1 22 LRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (470)
T ss_dssp CEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence 358888887764 47889999999987765443 45578999999999999988743 567899999
Q ss_pred CCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCC-----------------cceeE
Q 029743 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-----------------YPIES 128 (188)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-----------------~~v~~ 128 (188)
.. ..+..+.. +...+..+ |+|||++++.. .++.+++|+..++...+....+.. .....
T Consensus 100 ~~--~~~~~l~~-~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~ 175 (470)
T d2bgra1 100 NK--RQLITEER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (470)
T ss_dssp TT--TEECCSSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred CC--Cccccccc-CCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence 75 33455666 77777777 99999999985 456899999988876544322111 12456
Q ss_pred EEeeCCCCEEEEEeCCC-cEEEEeC
Q 029743 129 LALSHDRKFLGSISHDS-MLKLWDL 152 (188)
Q Consensus 129 ~~~~~~~~~l~~~~~d~-~i~iwd~ 152 (188)
+.|+|||++|+....|. .+..|.+
T Consensus 176 ~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 176 LWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEE
T ss_pred cEECCCCCccceeEecCCcCceEEE
Confidence 78999999999877543 3554443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.51 E-value=1.5e-12 Score=92.90 Aligned_cols=148 Identities=8% Similarity=-0.160 Sum_probs=107.4
Q ss_pred CeeecccCeEEEEe-----CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec----------CCCeEEEEE
Q 029743 1 MTFAADAMKLLGTS-----GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYS 65 (188)
Q Consensus 1 l~~s~~~~~l~~~~-----~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d 65 (188)
++++|||+.++... ..+.|.+||..+++.+..+..+..+ .++|+|||++|++++ .++.|.+||
T Consensus 26 ~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D 103 (373)
T d2madh_ 26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred cccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEE
Confidence 46899999987753 3457999999999999888765443 799999999998865 357899999
Q ss_pred eCCcccccceeeeccCCce-------eEE-eecCCCEEEEec--CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCC
Q 029743 66 WGYFKDCSDRFVGLSPNSV-------DAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (188)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v-------~~~-~~~~~~~l~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 135 (188)
..+ ++.+..+.. +.... ..+ ++++++.++... .++.+.+|+....+...... ...++.++|++
T Consensus 104 ~~t-~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g 176 (373)
T d2madh_ 104 PVT-FLPIADIEL-PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGA 176 (373)
T ss_pred CCC-CcEEEEEec-CCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-----cceeEEEecCC
Confidence 986 455555443 33222 334 688888765543 45678888887766554432 34678899998
Q ss_pred CEE-EEEeCCCcEEEEeCCCccC
Q 029743 136 KFL-GSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 136 ~~l-~~~~~d~~i~iwd~~~~~~ 157 (188)
+.+ ++.+.|+.+.+|+......
T Consensus 177 ~~~~v~~~~dg~~~~~~~~~~~~ 199 (373)
T d2madh_ 177 PSTFYLLCAQGGLAKTDHAGGAA 199 (373)
T ss_pred CcEEEEEcCCCeEEEEEcCCcee
Confidence 765 6778899999999887654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.49 E-value=1.1e-13 Score=99.20 Aligned_cols=159 Identities=9% Similarity=-0.018 Sum_probs=105.7
Q ss_pred CeeecccCeEEEEe----------CCCcEEEEEcCCCceeeeeccccc-------ceEEEEEEeCCCEEEEec-CCCeEE
Q 029743 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFSEE-------ELTSVVLMKNGRKVVCGS-QSGTVL 62 (188)
Q Consensus 1 l~~s~~~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~d~~i~ 62 (188)
++|+|||++|++.+ .++.|.+||..+++.+..+..+.. ....++|+|||++|+++. .++.+.
T Consensus 70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~ 149 (368)
T d1mdah_ 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEE
Confidence 36899999998865 367799999999988777653322 234689999999988775 468999
Q ss_pred EEEeCCcccccceee----------------------------------------------------------------e
Q 029743 63 LYSWGYFKDCSDRFV----------------------------------------------------------------G 78 (188)
Q Consensus 63 ~~d~~~~~~~~~~~~----------------------------------------------------------------~ 78 (188)
+||+... .....+. .
T Consensus 150 ~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (368)
T d1mdah_ 150 GLSVPGA-SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA 228 (368)
T ss_dssp EEEETTT-EEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred EEECCCC-cEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence 9997642 1100000 0
Q ss_pred --------------------------------ccCCceeEE-eecCCCEEEEecC---------CCeEEEEecccCeeee
Q 029743 79 --------------------------------LSPNSVDAL-LKLDEDRVITGSE---------NGLISLVGILPNRIIQ 116 (188)
Q Consensus 79 --------------------------------~~~~~v~~~-~~~~~~~l~~~~~---------d~~v~~~d~~~~~~~~ 116 (188)
........+ +++++..++.... ...|.+||..+++.+.
T Consensus 229 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~ 308 (368)
T d1mdah_ 229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308 (368)
T ss_dssp BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE
Confidence 000000112 3445554443321 1247889999998888
Q ss_pred ecccCCCcceeEEEeeCCCCE--EEEEeCCCcEEEEeCCCccCCCCCC
Q 029743 117 PIAEHSEYPIESLALSHDRKF--LGSISHDSMLKLWDLDDILKGSGNN 162 (188)
Q Consensus 117 ~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (188)
.+... . .+..++|+|||+. ++++..++.|++||..+++....++
T Consensus 309 ~~~~~-~-~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 309 PISNG-H-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CCEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EecCC-C-ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence 77654 3 6889999999973 3566678999999999887655443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=3.1e-12 Score=89.61 Aligned_cols=154 Identities=12% Similarity=0.128 Sum_probs=103.7
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCCCceeeee---cccccceEEEEEEeCCCEEEEecC-CCeEEEEEeCCccccc-c
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCS-D 74 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~-~ 74 (188)
|+|||||++|++++. ++.|++|++........+ ..+...+..++|+|+|++|++++. ++.+.+|+........ .
T Consensus 42 la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~ 121 (333)
T d1ri6a_ 42 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121 (333)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecc
Confidence 579999999966654 799999999765332222 234456778999999999988875 6689999886432211 1
Q ss_pred eeeeccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCeeeee-----cccCCCcceeEEEeeCCCCEEEEEe-CCCc
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQP-----IAEHSEYPIESLALSHDRKFLGSIS-HDSM 146 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~ 146 (188)
.... +...+.++ ++|++++++.++ .+..|.+|+......... .....+.....++|++++..++... ..+.
T Consensus 122 ~~~~-~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~ 200 (333)
T d1ri6a_ 122 DVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS 200 (333)
T ss_dssp EEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred cccC-CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCc
Confidence 2223 45556667 799999887776 456799999865432211 1111122568899999998876554 5567
Q ss_pred EEEEeCCCc
Q 029743 147 LKLWDLDDI 155 (188)
Q Consensus 147 i~iwd~~~~ 155 (188)
..+|++...
T Consensus 201 ~~v~~~~~~ 209 (333)
T d1ri6a_ 201 VDVWELKDP 209 (333)
T ss_dssp EEEEESSCT
T ss_pred eEEEeeccc
Confidence 788876543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.45 E-value=5.1e-13 Score=93.90 Aligned_cols=115 Identities=12% Similarity=0.028 Sum_probs=89.1
Q ss_pred EEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEE-EecCCCeEEEEecccCeeeeeccc
Q 029743 43 VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNRIIQPIAE 120 (188)
Q Consensus 43 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~-~~~~d~~v~~~d~~~~~~~~~~~~ 120 (188)
++++++++++++++.+++|.+||+.+ ++.+..+...+...+..+ ++|||++++ ++..++.|.+||+.+++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t-~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCC-CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 46889999999999999999999987 566776653145567777 899999874 556789999999999988776643
Q ss_pred CCC-----cceeEEEeeCCCCEEEEEe------------CCCcEEEEeCCCccCC
Q 029743 121 HSE-----YPIESLALSHDRKFLGSIS------------HDSMLKLWDLDDILKG 158 (188)
Q Consensus 121 ~~~-----~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~ 158 (188)
... ..+..++|+|||+++++++ .+..+.+|+..+....
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 135 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence 321 1356899999999987664 4678899998876543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.41 E-value=6.4e-12 Score=88.83 Aligned_cols=113 Identities=11% Similarity=-0.040 Sum_probs=81.9
Q ss_pred eeecccCeEEEEe-----CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec----------CCCeEEEEEe
Q 029743 2 TFAADAMKLLGTS-----GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSW 66 (188)
Q Consensus 2 ~~s~~~~~l~~~~-----~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~ 66 (188)
+.+||++.+++.. .++.|++||..+++.+..+..+.. ..++|+|||++|++++ .++.|++||+
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence 4689999998764 356799999999999888875543 3799999999887653 4678999999
Q ss_pred CCcccccceeeeccC-------CceeEE-eecCCCEEEEec--CCCeEEEEecccCeeeeec
Q 029743 67 GYFKDCSDRFVGLSP-------NSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPI 118 (188)
Q Consensus 67 ~~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~--~d~~v~~~d~~~~~~~~~~ 118 (188)
.+ ++.+..+.. +. .....+ |+|++++++.+. .+..+.+|+..+++.+..+
T Consensus 86 ~t-~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 145 (355)
T d2bbkh_ 86 VT-LLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML 145 (355)
T ss_dssp TT-CCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred CC-CCEEEEEec-CCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEE
Confidence 76 455444432 21 122334 799999887664 5677899998877655444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.38 E-value=4.2e-12 Score=89.78 Aligned_cols=157 Identities=11% Similarity=0.113 Sum_probs=103.2
Q ss_pred CeeecccCeEEEEe--CCCcEEEEEcCCCceeeeeccccc-------c--------------------------------
Q 029743 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEE-------E-------------------------------- 39 (188)
Q Consensus 1 l~~s~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~-------~-------------------------------- 39 (188)
++|+|++++++.+. .+..+.+|+..+++.+..+..+.. .
T Consensus 111 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~ 190 (355)
T d2bbkh_ 111 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 190 (355)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred EEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc
Confidence 36899999988775 356788999888766554332110 1
Q ss_pred ------eEEEEEEeCCCEEEEecCCCeEEEEEeCCcccc-cceeeecc----------CCceeEE-eecCCCEEEEecCC
Q 029743 40 ------LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-SDRFVGLS----------PNSVDAL-LKLDEDRVITGSEN 101 (188)
Q Consensus 40 ------v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~----------~~~v~~~-~~~~~~~l~~~~~d 101 (188)
+....+.+++..++.++.++.+++|++...... +..... + ......+ +++++..++....+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~ 269 (355)
T d2bbkh_ 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA-LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 269 (355)
T ss_dssp CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEES-SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCC-cccceEeeeeeccceEEEEEeCCCCeEEEEecc
Confidence 122334444556667777889999998653211 111111 1 1112234 68888877765432
Q ss_pred ----------CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE--EEEEeCCCcEEEEeCCCccCCCC
Q 029743 102 ----------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF--LGSISHDSMLKLWDLDDILKGSG 160 (188)
Q Consensus 102 ----------~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~iwd~~~~~~~~~ 160 (188)
+.|.+||+.+++.+..+... . .+.+++|+|||+. +++++.|+.|++||+++++....
T Consensus 270 ~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~-~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~ 338 (355)
T d2bbkh_ 270 RDEWRHKTASRFVVVLDAKTGERLAKFEMG-H-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 338 (355)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCceeecCCCCeEEEEeCCCCcEEEEecCC-C-CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEE
Confidence 36999999999988877654 3 6889999999983 45667899999999998875443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.18 E-value=1.5e-09 Score=78.77 Aligned_cols=149 Identities=11% Similarity=0.045 Sum_probs=98.5
Q ss_pred eecccCeEEEEe-CCCcEEEEEcCCCceeeeec-ccccceEEEEEEeCCCE--EEEecCCC-----------------eE
Q 029743 3 FAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRK--VVCGSQSG-----------------TV 61 (188)
Q Consensus 3 ~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--l~~~~~d~-----------------~i 61 (188)
++|||++|++.. .++.|.++|+.+.++...+. .+...+..++|+|+++. ++..+.+. .+
T Consensus 79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~ 158 (441)
T d1qnia2 79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF 158 (441)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence 468999997775 57899999999998877654 35678999999999984 33333321 12
Q ss_pred EEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCC---------------------------------------
Q 029743 62 LLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN--------------------------------------- 101 (188)
Q Consensus 62 ~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d--------------------------------------- 101 (188)
..+|..+ ......+.. .. ....+ ++|+|+++++.+.+
T Consensus 159 ~~iD~~t-~~v~~qI~v-~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~ 235 (441)
T d1qnia2 159 TAIDAET-MDVAWQVIV-DG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG 235 (441)
T ss_dssp EEEETTT-CSEEEEEEE-SS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred EeecCcc-ceeeEEEec-CC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC
Confidence 3455543 233333332 23 34445 79999988776533
Q ss_pred --CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEE-EEeCCCcEEEEeCCCcc
Q 029743 102 --GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG-SISHDSMLKLWDLDDIL 156 (188)
Q Consensus 102 --~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~ 156 (188)
+.+.+++......+..+.... ....+.++|||++++ ++..+++|.+||+++..
T Consensus 236 ~~~v~vvd~~~~~~v~~~IPvgk--sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~ 291 (441)
T d1qnia2 236 DSKVPVVDGRGESEFTRYIPVPK--NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD 291 (441)
T ss_dssp TCCCCEEECSSSCSSEEEECCBS--SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred CCCcEEEEcccCCceEEEEeCCC--CccCceECCCCCEEEEeCCcCCcEEEEEeehhh
Confidence 223333333334455555553 467899999999875 55688999999998754
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=7.1e-09 Score=70.32 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=88.4
Q ss_pred eeecccCeEEEEeCCC---cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-CeEEEEEeC--C-------
Q 029743 2 TFAADAMKLLGTSGDG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWG--Y------- 68 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~--~------- 68 (188)
+|||||+.||...... .+.+.+...+... .+..+........|+|+|+.++..... +...++... .
T Consensus 45 ~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (269)
T d2hqsa1 45 AWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT 123 (269)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC
T ss_pred EECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeee
Confidence 6999999999875543 4666676665543 334466778889999999877754321 111111110 0
Q ss_pred -----------------------------------cccccceeeeccCCceeEE-eecCCCEEEEecCC-Ce--EEEEec
Q 029743 69 -----------------------------------FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN-GL--ISLVGI 109 (188)
Q Consensus 69 -----------------------------------~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~~--v~~~d~ 109 (188)
.......+.. ........ ++|+++.++..+.+ +. +.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~ 202 (269)
T d2hqsa1 124 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 202 (269)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred eccccccccccccccccceecccccCCceEeeeecccccceeeec-ccccccccccccccceeEEEeecCCceeeeEeec
Confidence 0000011111 11222233 78999988776644 33 444554
Q ss_pred ccCeeeeecccCCCcceeEEEeeCCCCEEEEEeC---CCcEEEEeCCCccCCC
Q 029743 110 LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH---DSMLKLWDLDDILKGS 159 (188)
Q Consensus 110 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~ 159 (188)
..+.. ..+. ... ......|+|||+.|+..+. ...|+++++.......
T Consensus 203 ~~~~~-~~~~-~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~ 252 (269)
T d2hqsa1 203 ATGGV-QVLS-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR 252 (269)
T ss_dssp TTCCE-EECC-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred ccccc-eEee-cCc-cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 44433 2222 323 5678899999999875553 3478899998765543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.11 E-value=9.1e-09 Score=73.35 Aligned_cols=154 Identities=11% Similarity=0.089 Sum_probs=96.0
Q ss_pred CeeecccCeEEEEeC-CCcEEEEEcCC-Ccee--eee--cccccceEEEEEEeCCCEEEEec-CCCeEEEEEeCCccccc
Q 029743 1 MTFAADAMKLLGTSG-DGTLSVCNLRK-NTVQ--TRS--EFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCS 73 (188)
Q Consensus 1 l~~s~~~~~l~~~~~-d~~i~i~~~~~-~~~~--~~~--~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~ 73 (188)
+.|+|+|+++++++. ...|.+|+... +... ... .........++|+|+++++++.. .+++|.+|+++......
T Consensus 150 v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~ 229 (365)
T d1jofa_ 150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE
Confidence 469999999988865 35788887654 3221 111 12345788999999999886554 57899999996532111
Q ss_pred -ceeee----------------ccCCceeEE-eecCCCEEEEecC------CCeEEEEecccCeeee------ecccCCC
Q 029743 74 -DRFVG----------------LSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQ------PIAEHSE 123 (188)
Q Consensus 74 -~~~~~----------------~~~~~v~~~-~~~~~~~l~~~~~------d~~v~~~d~~~~~~~~------~~~~~~~ 123 (188)
..... ........+ ++|+|++|+++.. ...|..|++.....+. ..... +
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-G 308 (365)
T d1jofa_ 230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-G 308 (365)
T ss_dssp EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-C
T ss_pred EEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcC-C
Confidence 11000 011123445 6999999988742 2337777765422111 11111 2
Q ss_pred cceeEEEeeC-CCCEEEEEe-CCCcEEEEeCCCc
Q 029743 124 YPIESLALSH-DRKFLGSIS-HDSMLKLWDLDDI 155 (188)
Q Consensus 124 ~~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~ 155 (188)
....+++++| +|++|+++. .++.|.+|+++..
T Consensus 309 ~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 309 GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 2567899998 789887665 6799999987654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.10 E-value=1.4e-09 Score=77.47 Aligned_cols=146 Identities=10% Similarity=-0.194 Sum_probs=95.6
Q ss_pred eeecccCeEEE---EeCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec----------CCCeEEEEEe
Q 029743 2 TFAADAMKLLG---TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSW 66 (188)
Q Consensus 2 ~~s~~~~~l~~---~~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~ 66 (188)
+..++++.... ...++ .|.++|..+++.+..+..+..+ .++|+|+|+.|++.+ .++.|.+||.
T Consensus 26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~ 103 (368)
T d1mdah_ 26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP 103 (368)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence 34566765332 23344 4777799999988887765544 689999999988754 3678999999
Q ss_pred CCcccccceeeeccC-------CceeEE-eecCCCEEEEec-CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE
Q 029743 67 GYFKDCSDRFVGLSP-------NSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 67 ~~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 137 (188)
.+ ...+..+.. +. .....+ |+|||++++++. .++.+.+||+.+++.+..+..+.. .. + +......
T Consensus 104 ~t-~~~~~~i~~-p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~-~~--~-~~~~~~~ 177 (368)
T d1mdah_ 104 VT-FLPIADIEL-PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC-FH--I-HPGAAAT 177 (368)
T ss_dssp TT-CCEEEEEEE-TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC-CC--C-EEEETTE
T ss_pred CC-CcEeeeecC-CccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc-ce--E-ccCCCce
Confidence 76 455444432 21 122345 899999998775 578999999999998887766532 11 1 1112234
Q ss_pred EEEEeCCCcEEEEeCCCc
Q 029743 138 LGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 138 l~~~~~d~~i~iwd~~~~ 155 (188)
++..+.||.+.++++...
T Consensus 178 ~v~~~~Dg~~~~~~~~~~ 195 (368)
T d1mdah_ 178 HYLGSCPASLAASDLAAA 195 (368)
T ss_dssp EECCCCTTSCEEEECCSS
T ss_pred EEEEcCCCCEEEEEecCC
Confidence 455556666666665544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.05 E-value=9.6e-10 Score=80.77 Aligned_cols=112 Identities=8% Similarity=0.030 Sum_probs=85.6
Q ss_pred EEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee-----eeccCCceeEE-eecCCCEEEEecC---------CCeEE
Q 029743 41 TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-----VGLSPNSVDAL-LKLDEDRVITGSE---------NGLIS 105 (188)
Q Consensus 41 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~~v~~~-~~~~~~~l~~~~~---------d~~v~ 105 (188)
..+.|.++++++.. .++.+.+||+.+. .....+ .. +...+.++ |||||++|+.++. ++.++
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~-~~~~~~~~~~~~~-~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~ 95 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYG-NSSVFLENSTFDE-FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTC-CEEEEECTTTTTT-SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCC-CEEEEEchhhhhh-ccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence 46789998887764 4678999999864 333333 33 44678888 8999999998753 46789
Q ss_pred EEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCCC
Q 029743 106 LVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (188)
Q Consensus 106 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (188)
+||+.+++. ..+..+.+ .+..+.|+|||+.++.. .++.+++|+..++....
T Consensus 96 l~d~~~~~~-~~l~~~~~-~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~ 146 (470)
T d2bgra1 96 IYDLNKRQL-ITEERIPN-NTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR 146 (470)
T ss_dssp EEETTTTEE-CCSSCCCT-TEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred EEECCCCcc-cccccCCc-cccccccccCcceeeEe-ecccceEEECCCCceee
Confidence 999998875 45666655 79999999999999986 57789999998876544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.95 E-value=1.8e-07 Score=63.93 Aligned_cols=151 Identities=11% Similarity=0.101 Sum_probs=101.8
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeee--cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
++.++++++++....+.+.+++.. ++.+..+ ..+......+++.++++.+++....+.|++|+.. +..+..+-..
T Consensus 120 avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~--G~~~~~~g~~ 196 (279)
T d1q7fa_ 120 TVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGGE 196 (279)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESCT
T ss_pred ccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC--Cceeeeeccc
Confidence 345566666665555666666643 4444443 2455667889999999988888888999999975 4555544210
Q ss_pred -cCCceeEE-eecCCCEEEEec-CCCeEEEEecccCeeeeecccCC-CcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 80 -SPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 80 -~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
.......+ +.++|+.+++-. .++.|.+|+. +|+.+..+.... ....+.+++.++|.+++ +..++.|++|.....
T Consensus 197 g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 197 GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred ccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 23345667 689999777754 4557999984 577666653321 12478999999997554 567899999998876
Q ss_pred cC
Q 029743 156 LK 157 (188)
Q Consensus 156 ~~ 157 (188)
.+
T Consensus 275 ~~ 276 (279)
T d1q7fa_ 275 AP 276 (279)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.86 E-value=2.1e-07 Score=62.94 Aligned_cols=150 Identities=7% Similarity=-0.054 Sum_probs=92.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccC
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (188)
++.++++++++-.....+..++............-.....++++.++++.+++...++.|..++.+. .....+....-
T Consensus 104 avd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~--~~~~~~~~~~~ 181 (260)
T d1rwia_ 104 AVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES--NNQVVLPFTDI 181 (260)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT--CCEEECCCSSC
T ss_pred cccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc--ceeeeeecccc
Confidence 4556666555544445555555443322111112223457899999999888888888899998764 22222221033
Q ss_pred CceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 029743 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (188)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (188)
.....+ +.++|+++++....+.|..++.............-. ....|+++++|..+++-..++.|+.++...
T Consensus 182 ~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~-~P~~i~~d~~g~l~vad~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 182 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN-TPLAVAVDSDRTVYVADRGNDRVVKLTSLE 254 (260)
T ss_dssp CSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCC-CEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred CCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCC-CeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence 445667 689999888888888898888654432221112212 568999999998777766677777666543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.84 E-value=2.2e-07 Score=62.86 Aligned_cols=151 Identities=7% Similarity=0.006 Sum_probs=97.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeecc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (188)
++++++++++++....+.+++++-.....+.... ......++++.++++++++-..+..+..++... ..........
T Consensus 62 vav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~ 138 (260)
T d1rwia_ 62 LAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS--KTQTVLPFTG 138 (260)
T ss_dssp EEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC--SSCEECCCCS
T ss_pred EEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeecccccccccccccc--ceeeeeeecc
Confidence 4677888766665555555555444444333322 234578999999998887766666777776543 2222221102
Q ss_pred CCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
......+ +.++|+.+++...++.|..++............... ....|++.+++.++++....+.|..++....
T Consensus 139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~-~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred cCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccC-CCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence 2345667 688999888888888999999775443332222323 5688999999988877777888888876654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.81 E-value=9.2e-08 Score=69.30 Aligned_cols=132 Identities=8% Similarity=0.038 Sum_probs=90.9
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeecc------------------------------cccceEEEEEEeCCCEEEEe-cCC
Q 029743 10 LLGTSGDGTLSVCNLRKNTVQTRSEF------------------------------SEEELTSVVLMKNGRKVVCG-SQS 58 (188)
Q Consensus 10 l~~~~~d~~i~i~~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~-~~d 58 (188)
+++++.+|+|++|++.+++.++.+.- |.........+|||++|++. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 55677899999999999887776531 22334455567999988665 467
Q ss_pred CeEEEEEeCCcccccceeeeccCCceeEE-eecCCCE--EEEecCCC-----------------eEEEEecccCeeeeec
Q 029743 59 GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDR--VITGSENG-----------------LISLVGILPNRIIQPI 118 (188)
Q Consensus 59 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~--l~~~~~d~-----------------~v~~~d~~~~~~~~~~ 118 (188)
..|.++|+++ .+..+.+.--+...+..+ ++|+|+. ++..+.+. .+..+|..+.+...++
T Consensus 94 ~rVavIDl~t-~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 94 TRVARIRLDI-MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TEEEEEETTT-TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CEEEEEECCC-CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 7999999987 355554432045567777 7999884 44433322 2345777777777666
Q ss_pred ccCCCcceeEEEeeCCCCEEEEEeCC
Q 029743 119 AEHSEYPIESLALSHDRKFLGSISHD 144 (188)
Q Consensus 119 ~~~~~~~v~~~~~~~~~~~l~~~~~d 144 (188)
... + ....+.|+|+|+++++++.+
T Consensus 173 ~v~-~-~p~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 173 IVD-G-NLDNTDADYTGKYATSTCYN 196 (441)
T ss_dssp EES-S-CCCCEEECSSSSEEEEEESC
T ss_pred ecC-C-CccceEECCCCCEEEEEecC
Confidence 655 3 57889999999999877754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.80 E-value=7.4e-07 Score=61.52 Aligned_cols=153 Identities=13% Similarity=0.069 Sum_probs=101.8
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee-c
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-L 79 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~ 79 (188)
++++|||+++++...+++|+.++.... . ..+......+.+++|+++|+++++...++.+..++..........+.. .
T Consensus 33 iAv~pdG~l~vt~~~~~~I~~i~p~g~-~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (302)
T d2p4oa1 33 LASAPDGTIFVTNHEVGEIVSITPDGN-Q-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP 110 (302)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCC-E-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred EEECCCCCEEEEeCCCCEEEEEeCCCC-E-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccC
Confidence 478999999999888999988885543 2 233445678999999999999988888888888887542222222222 0
Q ss_pred cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc--------cCC-CcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA--------EHS-EYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~--------~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
.......+ +.++++++++.+.++.+..++...+....... ... ......+.+.. +..+++.+..+.|..
T Consensus 111 ~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~ 189 (302)
T d2p4oa1 111 DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLR 189 (302)
T ss_dssp TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEE
T ss_pred CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEe
Confidence 23445666 68999998888888899888887654221111 010 11355666653 234455667788888
Q ss_pred EeCCCcc
Q 029743 150 WDLDDIL 156 (188)
Q Consensus 150 wd~~~~~ 156 (188)
+++....
T Consensus 190 ~~~~~~~ 196 (302)
T d2p4oa1 190 IPVDSTD 196 (302)
T ss_dssp EEBCTTS
T ss_pred ccccccc
Confidence 8876543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.76 E-value=1.1e-06 Score=61.20 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=93.5
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC--CeEEEEEeCCcccccceeee
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~ 78 (188)
++|.++|++.++-...+.|+.|+...+.....+.........++++++|+++++...+ ....++.+......+..+..
T Consensus 45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~ 124 (319)
T d2dg1a1 45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 124 (319)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc
Confidence 3688899876666677889888887766555544455678899999999888775432 33444444432333333322
Q ss_pred ccC---CceeEE-eecCCCEEEEecC------CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEE-EEeCCCcE
Q 029743 79 LSP---NSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG-SISHDSML 147 (188)
Q Consensus 79 ~~~---~~v~~~-~~~~~~~l~~~~~------d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i 147 (188)
.. .....+ +.++|++.++... .+.+..++..... +..+...-. ..+.++|+|+++.|. +-+..+.|
T Consensus 125 -~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~-~pnGia~s~dg~~lyvad~~~~~I 201 (319)
T d2dg1a1 125 -DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNIS-VANGIALSTDEKVLWVTETTANRL 201 (319)
T ss_dssp -SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEES-SEEEEEECTTSSEEEEEEGGGTEE
T ss_pred -CCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccc-eeeeeeeccccceEEEecccCCce
Confidence 21 234455 6899987766432 2335555544332 222222212 467899999998765 44567899
Q ss_pred EEEeCCC
Q 029743 148 KLWDLDD 154 (188)
Q Consensus 148 ~iwd~~~ 154 (188)
..|++..
T Consensus 202 ~~~d~~~ 208 (319)
T d2dg1a1 202 HRIALED 208 (319)
T ss_dssp EEEEECT
T ss_pred EEEEEcC
Confidence 9998764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.74 E-value=2.4e-06 Score=59.37 Aligned_cols=117 Identities=9% Similarity=0.077 Sum_probs=79.6
Q ss_pred cceEEEEEEeCCC-----EEEEecCCCeEEEEEeCCcccccc-----eeeeccCCceeEE-eecCCCEEEEecCCCeEEE
Q 029743 38 EELTSVVLMKNGR-----KVVCGSQSGTVLLYSWGYFKDCSD-----RFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (188)
Q Consensus 38 ~~v~~~~~~~~~~-----~l~~~~~d~~i~~~d~~~~~~~~~-----~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~ 106 (188)
.....++|+|++. ++++-+..+.|..|++...+.... .+..........+ +..+|+++++....+.|.+
T Consensus 172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence 3457899999764 445556778899998864322211 1111011224456 6789998888778899999
Q ss_pred EecccCeeeeecccCCCcceeEEEeeCCCCEE-EEEeCCCcEEEEeCCCc
Q 029743 107 VGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLDDI 155 (188)
Q Consensus 107 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~ 155 (188)
||.+.+..+..+..+.. .+.+++|.|+++.| ++.+..+.|..+++...
T Consensus 252 ~dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 252 FGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EeCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 99888877666665534 68899999998755 55667788888887543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=8.6e-08 Score=70.39 Aligned_cols=147 Identities=14% Similarity=0.055 Sum_probs=92.9
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeecc---cccceEEEEEEeCCCEEEEec---------CCCeEEEEEeCCc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGS---------QSGTVLLYSWGYF 69 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~---------~d~~i~~~d~~~~ 69 (188)
.|.+++.++.. ..+|.|.+|++.+++....+.. ....+....|+||+++++... ..+.+.++|+.+.
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 46677766544 5678999999988765433332 223567788999999887653 3567899999752
Q ss_pred ccccceeeec--cCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcc-----------------eeEE
Q 029743 70 KDCSDRFVGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP-----------------IESL 129 (188)
Q Consensus 70 ~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~-----------------v~~~ 129 (188)
. ...+... ....+... |||+|+.++... ++.|++.+..++..++......... -..+
T Consensus 102 -~-~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~ 178 (465)
T d1xfda1 102 -D-PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (465)
T ss_dssp -C-CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred -c-eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence 2 2223210 22333334 899999988765 4568888877665543332211111 1467
Q ss_pred EeeCCCCEEEEEe-CCCcEEEEeC
Q 029743 130 ALSHDRKFLGSIS-HDSMLKLWDL 152 (188)
Q Consensus 130 ~~~~~~~~l~~~~-~d~~i~iwd~ 152 (188)
-|+|||++|+... .+..|..+.+
T Consensus 179 ~WSPDgk~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 179 WWSPDGTRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEE
T ss_pred EECCCCCeEEEEEecccccceeec
Confidence 7999999998765 3455555544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.68 E-value=4.9e-07 Score=64.21 Aligned_cols=155 Identities=9% Similarity=0.083 Sum_probs=88.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC-Cceeeee-cccccceEEEEEEeCCCEE--EEec-CCCeEEEEEeCCcccc---
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRS-EFSEEELTSVVLMKNGRKV--VCGS-QSGTVLLYSWGYFKDC--- 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l--~~~~-~d~~i~~~d~~~~~~~--- 72 (188)
|+|+|++++|+++.. +.+..|.+.. +...... .........+.++++++.+ +++. ..+++..+.+......
T Consensus 45 la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~ 123 (365)
T d1jofa_ 45 MTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCccee
Confidence 578999999988765 5677776653 2222211 1122334566777777743 3322 2344544443221111
Q ss_pred ------------cceeeeccCCceeEE-eecCCCEEEEecC-CCeEEEEecccC-eee--eecc-cCCCcceeEEEeeCC
Q 029743 73 ------------SDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPN-RII--QPIA-EHSEYPIESLALSHD 134 (188)
Q Consensus 73 ------------~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~v~~~d~~~~-~~~--~~~~-~~~~~~v~~~~~~~~ 134 (188)
...........+.++ ++|+|++++++.. ...|.+|+.... ... .... ...+...+.++|+|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pd 203 (365)
T d1jofa_ 124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT 203 (365)
T ss_dssp EEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT
T ss_pred EeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCC
Confidence 000111012235667 8999998887763 567888876532 221 1111 111235789999999
Q ss_pred CCEEEEEe-CCCcEEEEeCCCcc
Q 029743 135 RKFLGSIS-HDSMLKLWDLDDIL 156 (188)
Q Consensus 135 ~~~l~~~~-~d~~i~iwd~~~~~ 156 (188)
++++.+.. .+++|.+|++....
T Consensus 204 g~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 204 GNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTT
T ss_pred CceEEEeccCCCEEEEEEecCCC
Confidence 99885554 67899999987653
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=9.1e-07 Score=64.85 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=91.1
Q ss_pred eeecccCeEEEEeC---------CCcEEEEEcCCCceeeee--cccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcc
Q 029743 2 TFAADAMKLLGTSG---------DGTLSVCNLRKNTVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (188)
Q Consensus 2 ~~s~~~~~l~~~~~---------d~~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 70 (188)
.||||+++++.... .+.+.++|+.++...... ......+....|||+|+.|+... ++.|.+.+... +
T Consensus 67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~-~ 144 (465)
T d1xfda1 67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG-K 144 (465)
T ss_dssp EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS-S
T ss_pred EECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCC-C
Confidence 48999999887643 467889999987654332 23344566789999999988765 55777777654 2
Q ss_pred cccceee-eccCC-----------------ceeEE-eecCCCEEEEecC-CC----------------------------
Q 029743 71 DCSDRFV-GLSPN-----------------SVDAL-LKLDEDRVITGSE-NG---------------------------- 102 (188)
Q Consensus 71 ~~~~~~~-~~~~~-----------------~v~~~-~~~~~~~l~~~~~-d~---------------------------- 102 (188)
...+... + ... .-..+ |||||++|+.... +.
T Consensus 145 ~~~~lt~~g-~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~ 223 (465)
T d1xfda1 145 QAIRVVSTG-KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS 223 (465)
T ss_dssp CCEEEECCC-BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred ceEEEeccc-CcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCC
Confidence 2222221 1 111 11356 7999999987642 12
Q ss_pred -----eEEEEecccCeeeeeccc-----CCCcceeEEEeeCCCCEEEEEeC-C---CcEEEEeCCCccCC
Q 029743 103 -----LISLVGILPNRIIQPIAE-----HSEYPIESLALSHDRKFLGSISH-D---SMLKLWDLDDILKG 158 (188)
Q Consensus 103 -----~v~~~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~-d---~~i~iwd~~~~~~~ 158 (188)
.+.++|+.++........ ..+.-+..+.|+++++.++.... + ..|.++|..++...
T Consensus 224 ~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~ 293 (465)
T d1xfda1 224 ENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (465)
T ss_dssp CCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred CCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence 234455443332111100 01113667899999886654432 2 35778888876543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.56 E-value=2.6e-06 Score=58.66 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=87.1
Q ss_pred ceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCCeEEE
Q 029743 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (188)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~ 106 (188)
+.+..++. ...+..++++|||+++++...+++|..++.. +. ...+.. ....+.++ +.++|+++++...++.+..
T Consensus 19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g~-~~~~~~-~~~~~~gla~~~dG~l~v~~~~~~~~~~ 93 (302)
T d2p4oa1 19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD--GN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV 93 (302)
T ss_dssp EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT--CC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC--CC-EEEEEc-CCCCcceEEEcCCCCeEEEecCCceEEE
Confidence 33444442 2357899999999999999999988887754 23 334444 56678888 7999999998888888888
Q ss_pred EecccCe--eeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 107 VGILPNR--IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 107 ~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
++..... ...............+++.++++++++.+.++.+..++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 94 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred EEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence 8865432 211111111225789999999998888888888888887754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.42 E-value=4.1e-05 Score=51.90 Aligned_cols=150 Identities=7% Similarity=0.107 Sum_probs=96.9
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecc------cccceEEEEEEeCC-CEEEE-ecCCCeEEEEEeCCcccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF------SEEELTSVVLMKNG-RKVVC-GSQSGTVLLYSWGYFKDC 72 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~------~~~~v~~~~~~~~~-~~l~~-~~~d~~i~~~d~~~~~~~ 72 (188)
|+++|+++.+++-...+.|++||.+ ++.+..+.. .......+++.++. ..+++ .+.++.|..++.. +..
T Consensus 28 vavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~ 104 (279)
T d1q7fa_ 28 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQF 104 (279)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCE
T ss_pred EEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc--ccc
Confidence 4678888877776667889999854 555554431 11234556666544 33433 3445567666653 444
Q ss_pred cceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecc--cCCCcceeEEEeeCCCCEEEEEeCCCcEEE
Q 029743 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA--EHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (188)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 149 (188)
...+..........+ ..++|.++++....+.+.+++.. ++.+..+. .+.. ....+++.+++..+++....+.|++
T Consensus 105 ~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~-~~~~i~~d~~g~i~v~d~~~~~V~~ 182 (279)
T d1q7fa_ 105 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLE-FPNGVVVNDKQEIFISDNRAHCVKV 182 (279)
T ss_dssp EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCS-SEEEEEECSSSEEEEEEGGGTEEEE
T ss_pred eeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccccccc-ccceeeeccceeEEeeeccccceee
Confidence 444432123345566 57889988888888889888854 55555542 2223 5778999999988888888899999
Q ss_pred EeCCCc
Q 029743 150 WDLDDI 155 (188)
Q Consensus 150 wd~~~~ 155 (188)
|+....
T Consensus 183 ~d~~G~ 188 (279)
T d1q7fa_ 183 FNYEGQ 188 (279)
T ss_dssp EETTCC
T ss_pred eecCCc
Confidence 997643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.41 E-value=2.6e-05 Score=52.32 Aligned_cols=110 Identities=11% Similarity=0.074 Sum_probs=69.4
Q ss_pred eeecc--cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecC----CC--eEEEEEeCCccccc
Q 029743 2 TFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----SG--TVLLYSWGYFKDCS 73 (188)
Q Consensus 2 ~~s~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~--~i~~~d~~~~~~~~ 73 (188)
..||+ |+.++..+. +.|++.|+.+++.. .+..+.......+|||||+.|+.... +. .|.+++... ...
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~--g~~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN--GEI 80 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT--TEE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC--Cce
Confidence 46899 999988754 67999999988765 45556678899999999999886432 22 355555543 222
Q ss_pred ceeee------ccCCceeEE-eecCCCEEEEecC------CCeEEEEecccCeee
Q 029743 74 DRFVG------LSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRII 115 (188)
Q Consensus 74 ~~~~~------~~~~~v~~~-~~~~~~~l~~~~~------d~~v~~~d~~~~~~~ 115 (188)
..+.. ......... ++|+|+.++.... ...+...+...+...
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV 135 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence 22221 011223444 7999998887543 223555665555443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.39 E-value=9.5e-05 Score=51.03 Aligned_cols=155 Identities=11% Similarity=0.019 Sum_probs=94.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceeeeecccc----cceEEEEEEeCCCEEEEecCC-------------CeEEE
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE----EELTSVVLMKNGRKVVCGSQS-------------GTVLL 63 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d-------------~~i~~ 63 (188)
|+|+++++.++++...+.|..++...+.......... ...+.+++.++|+..++-... ..-.+
T Consensus 76 l~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v 155 (314)
T d1pjxa_ 76 CQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred EEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceE
Confidence 4678899888888777778888876554322211111 135789999999887764221 12234
Q ss_pred EEeCCcccccceeeeccCCceeEE-eecCCC-----EEEEecCCCeEEEEecccCee------eeecccCCCcceeEEEe
Q 029743 64 YSWGYFKDCSDRFVGLSPNSVDAL-LKLDED-----RVITGSENGLISLVGILPNRI------IQPIAEHSEYPIESLAL 131 (188)
Q Consensus 64 ~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-----~l~~~~~d~~v~~~d~~~~~~------~~~~~~~~~~~v~~~~~ 131 (188)
|.+...+....... .-.....+ ++|++. ++++-+..+.|+.|++..... ...+........-.+++
T Consensus 156 ~~~~~dg~~~~~~~--~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiav 233 (314)
T d1pjxa_ 156 YCFTTDGQMIQVDT--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp EEECTTSCEEEEEE--EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred EEEeecCceeEeeC--CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEE
Confidence 44443333333222 22334556 677654 445556788899998764321 12222221223567999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCccC
Q 029743 132 SHDRKFLGSISHDSMLKLWDLDDILK 157 (188)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (188)
..+|+..++....+.|.+||.+....
T Consensus 234 D~~GnlyVa~~~~g~I~~~dp~~g~~ 259 (314)
T d1pjxa_ 234 DEDNNLLVANWGSSHIEVFGPDGGQP 259 (314)
T ss_dssp BTTCCEEEEEETTTEEEEECTTCBSC
T ss_pred ecCCcEEEEEcCCCEEEEEeCCCCEE
Confidence 99999888777789999999876553
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=3.9e-05 Score=51.25 Aligned_cols=126 Identities=16% Similarity=0.109 Sum_probs=75.7
Q ss_pred eecccCeEEEE-eCCC--cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-CeEEEEEeCCcccccceeee
Q 029743 3 FAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 3 ~s~~~~~l~~~-~~d~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~~ 78 (188)
++++++.++.. ..++ .|.+.++..+... .+..+........|+|+++.++..+.+ +...+|.........+...
T Consensus 134 ~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~- 211 (269)
T d2hqsa1 134 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS- 211 (269)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-
T ss_pred cccccccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEEEeecCCceeeeEeecccccceEee-
Confidence 44555554443 3344 4455555554433 333456677888999999988776554 4455555443233333333
Q ss_pred ccCCceeEE-eecCCCEEEEecC---CCeEEEEecccCeeeeecccCCCcceeEEEeeC
Q 029743 79 LSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~---d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 133 (188)
........ |+|||+.|+..+. ...|+++++..+... .+....+ .+...+|+|
T Consensus 212 -~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~lt~~~g-~~~~p~WSP 267 (269)
T d2hqsa1 212 -STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RLPATDG-QVKFPAWSP 267 (269)
T ss_dssp -CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-ECCCSSS-EEEEEEECC
T ss_pred -cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EEeCCCC-cEEeEEeCC
Confidence 34444555 8999998875553 346889998766554 4544434 688889998
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.26 E-value=0.00021 Score=49.32 Aligned_cols=151 Identities=12% Similarity=0.105 Sum_probs=88.8
Q ss_pred CeeecccCeEEEEeCC----CcEEEEEcCCCceeeeec--ccccceEEEEEEeCCCEEEEecCC----CeEEEEEeCCcc
Q 029743 1 MTFAADAMKLLGTSGD----GTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFK 70 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d----~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~ 70 (188)
|+++++|+++++...+ +.+...+...+....... ........+++.++|++.++.... ..-.+|-+...+
T Consensus 87 la~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg 166 (319)
T d2dg1a1 87 IKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF 166 (319)
T ss_dssp EEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred EEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc
Confidence 4677888776665332 234444444443332222 122347789999999876664321 122344443323
Q ss_pred cccceeeeccCCceeEE-eecCCCEEE-EecCCCeEEEEecccC-eee--------eecccCCCcceeEEEeeCCCCEEE
Q 029743 71 DCSDRFVGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILPN-RII--------QPIAEHSEYPIESLALSHDRKFLG 139 (188)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~-~~~~d~~v~~~d~~~~-~~~--------~~~~~~~~~~v~~~~~~~~~~~l~ 139 (188)
..+..+.. .-.....+ ++|+++.|+ +-+..+.|+.|++... ... ...... . ..-.+++..+|++.+
T Consensus 167 ~~~~~~~~-~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~-~-~PdGl~vD~~G~l~V 243 (319)
T d2dg1a1 167 RTVTPIIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E-GPDSCCIDSDDNLYV 243 (319)
T ss_dssp CCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S-EEEEEEEBTTCCEEE
T ss_pred ceeEEEee-ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc-c-ceeeeeEcCCCCEEE
Confidence 44444433 33445667 799998664 4457889999987632 111 111111 2 356799999999888
Q ss_pred EEeCCCcEEEEeCCC
Q 029743 140 SISHDSMLKLWDLDD 154 (188)
Q Consensus 140 ~~~~d~~i~iwd~~~ 154 (188)
+....+.|.+|+...
T Consensus 244 a~~~~g~V~~~~p~G 258 (319)
T d2dg1a1 244 AMYGQGRVLVFNKRG 258 (319)
T ss_dssp EEETTTEEEEECTTS
T ss_pred EEcCCCEEEEECCCC
Confidence 888889999999653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.04 E-value=0.00056 Score=46.61 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=86.5
Q ss_pred eeecccCeEEEEeC----CCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccc----
Q 029743 2 TFAADAMKLLGTSG----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDC---- 72 (188)
Q Consensus 2 ~~s~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~---- 72 (188)
.+.|+|++.++... .+.-.+|.+..++....... -.....++|+++++.++ +-+..+.|..|+++.....
T Consensus 109 ~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~ 187 (295)
T d2ghsa1 109 RMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 187 (295)
T ss_dssp EECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred EECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccc
Confidence 35567766555432 22345666666655444432 33567899999998665 5556788999988532111
Q ss_pred ccee---eeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEee-CCCCEEEEE
Q 029743 73 SDRF---VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (188)
Q Consensus 73 ~~~~---~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 141 (188)
...+ .+ .......+ +..+|++.++.-..+.|..||. .++.+..+..... .+++++|- ++.+.|+..
T Consensus 188 ~~~~~~~~~-~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 188 AEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp CEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEE
T ss_pred eEEEeccCc-ccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEE
Confidence 1111 12 23345566 5789988887777889999995 5788888776644 68999996 576666543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.88 E-value=0.0011 Score=47.20 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=89.8
Q ss_pred cccCeEEEEeC-CCcEEEEEcCCCceeeeecc-cccceEEEEEEe--CCCEEEEecCC------------------CeEE
Q 029743 5 ADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMK--NGRKVVCGSQS------------------GTVL 62 (188)
Q Consensus 5 ~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~d------------------~~i~ 62 (188)
+||++|++... ++.|.+.|++..++.+.+.. ....+..+...+ +..+++..+.. +.+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 48999988864 68899999999887654432 234567766654 44566665542 2355
Q ss_pred EEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecCCC---------------eEEEEec-----------------
Q 029743 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG---------------LISLVGI----------------- 109 (188)
Q Consensus 63 ~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---------------~v~~~d~----------------- 109 (188)
..|..+ .+....+.- . .....+ ++++|+++++.+.+. .+.+++.
T Consensus 177 ~ID~~t-m~V~~QV~V-~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing 253 (459)
T d1fwxa2 177 AVDADK-WEVAWQVLV-S-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 253 (459)
T ss_dssp EEETTT-TEEEEEEEE-S-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEecCC-ceEEEEeee-C-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence 667654 233333332 2 234445 799999988776431 1333333
Q ss_pred ------ccC---eeeeecccCCCcceeEEEeeCCCCEEEEEe-CCCcEEEEeCCCcc
Q 029743 110 ------LPN---RIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDIL 156 (188)
Q Consensus 110 ------~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (188)
+.. ..++.+.... ....+.++|||+++++++ .+.++.|+|+++..
T Consensus 254 V~VVD~~~~~~~~v~~yIPVpK--sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~ 308 (459)
T d1fwxa2 254 VKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 308 (459)
T ss_dssp EEEEECSGG--CSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred ceeecccccCCcceeEEEecCC--CCCceEECCCCCEEEEeCCcCCcEEEEEehhhh
Confidence 221 1122233232 356789999999987665 68999999998654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.87 E-value=0.00013 Score=48.77 Aligned_cols=95 Identities=7% Similarity=0.029 Sum_probs=61.8
Q ss_pred EEEeC--CCEEEEecCCCeEEEEEeCCcccccceeeeccCCceeEE-eecCCCEEEEecC----C--CeEEEEecccCee
Q 029743 44 VLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE----N--GLISLVGILPNRI 114 (188)
Q Consensus 44 ~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~----d--~~v~~~d~~~~~~ 114 (188)
..+|+ |+.++..+ ++.|.+.|+.. ...+.+.. +....... |||||+.|+.... + ..|.+++..+++.
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~--g~~~~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKS--GSTRKIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTT--CCEEEEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCC--CCEEEEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence 45788 88887654 45788888864 33455665 66666666 8999999886532 1 2477778777765
Q ss_pred eeecccC-----CCcceeEEEeeCCCCEEEEEe
Q 029743 115 IQPIAEH-----SEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 115 ~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~ 142 (188)
....... .........|+|+++.|+...
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 4332111 011356788999999887653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.53 E-value=0.0059 Score=45.41 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=35.5
Q ss_pred ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE
Q 029743 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 89 ~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 137 (188)
.-.|.++++|+.|+.++.+|.++|+.+..+.......-.-+.|..+|++
T Consensus 485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ 533 (573)
T d1kb0a2 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ 533 (573)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred EEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 3467788889999999999999999998876543211222556668864
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.52 E-value=0.0051 Score=41.65 Aligned_cols=147 Identities=9% Similarity=0.085 Sum_probs=91.0
Q ss_pred eeecccCeEEEEeCCCcEEEEEcCCCceeeeec----ccccceEEEEEEeCCCEEEEecC----CCeEEEEEeCCccccc
Q 029743 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCS 73 (188)
Q Consensus 2 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~ 73 (188)
++.++|+++++ +. ..+.++|..+++...... .....+..+.+.|+|++.++... .+.-.+|.+.. +...
T Consensus 65 ~~~~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-g~~~ 141 (295)
T d2ghsa1 65 AKISDSKQLIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVT 141 (295)
T ss_dssp EEEETTEEEEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEE
T ss_pred EEecCCCEEEE-Ee-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC-CcEE
Confidence 45567766665 44 458889998886543322 12235788999999987766432 23455666654 3333
Q ss_pred ceeeeccCCceeEE-eecCCCEEE-EecCCCeEEEEecccCe------e--eeecccCCCcceeEEEeeCCCCEEEEEeC
Q 029743 74 DRFVGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNR------I--IQPIAEHSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~-~~~~d~~v~~~d~~~~~------~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
..... -.....+ ++++++.++ +-+..+.|+.|++.... . ...+.+..+ ....+++..+|.+.++.-.
T Consensus 142 ~~~~~--~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g-~pdG~~vD~~GnlWva~~~ 218 (295)
T d2ghsa1 142 KLFAD--ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCDAEGHIWNARWG 218 (295)
T ss_dssp EEEEE--ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEECTTSCEEEEEET
T ss_pred EEeec--cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccc-cccceEEcCCCCEEeeeeC
Confidence 33332 2334555 789888654 55677889988874211 1 112222323 5778999999987776667
Q ss_pred CCcEEEEeCCC
Q 029743 144 DSMLKLWDLDD 154 (188)
Q Consensus 144 d~~i~iwd~~~ 154 (188)
.+.|..||...
T Consensus 219 ~g~V~~~dp~G 229 (295)
T d2ghsa1 219 EGAVDRYDTDG 229 (295)
T ss_dssp TTEEEEECTTC
T ss_pred CCceEEecCCC
Confidence 78899999654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.46 E-value=0.0054 Score=45.50 Aligned_cols=52 Identities=8% Similarity=0.138 Sum_probs=36.9
Q ss_pred ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCC-EEEE
Q 029743 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGS 140 (188)
Q Consensus 89 ~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 140 (188)
.-.+.++++|+.||.++.+|..+|+.+.++.......-.-+.+..+|+ +|++
T Consensus 466 ~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v 518 (560)
T d1kv9a2 466 STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAI 518 (560)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 345678888999999999999999999887655332222356666886 4443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.39 E-value=0.0059 Score=42.53 Aligned_cols=150 Identities=11% Similarity=-0.055 Sum_probs=84.4
Q ss_pred cccCeEEEEeCCC-----------cEEEEEcCCCceeee--e-cccccceEEEEEEeCCCEEEEecCC-CeEEEEEeCCc
Q 029743 5 ADAMKLLGTSGDG-----------TLSVCNLRKNTVQTR--S-EFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYF 69 (188)
Q Consensus 5 ~~~~~l~~~~~d~-----------~i~i~~~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~ 69 (188)
.+|+.++.|+.+. .+.+||+.++.-... . ..+.......++.+++++++.|+.+ ..+.+||..+.
T Consensus 29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~ 108 (387)
T d1k3ia3 29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD 108 (387)
T ss_dssp TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC
Confidence 4788888887421 367899987643221 1 1233334566788999999988765 58999998642
Q ss_pred cc-ccceeeeccCCceeEEeecCCCEEEEecCC------CeEEEEecccCeeeee--cc------cCCCc-----ceeEE
Q 029743 70 KD-CSDRFVGLSPNSVDALLKLDEDRVITGSEN------GLISLVGILPNRIIQP--IA------EHSEY-----PIESL 129 (188)
Q Consensus 70 ~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------~~v~~~d~~~~~~~~~--~~------~~~~~-----~v~~~ 129 (188)
.- ....+.. .......+..++|++++.|+.. ..+.+||+.+.+-... .. ..... .-..+
T Consensus 109 ~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (387)
T d1k3ia3 109 SWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 187 (387)
T ss_dssp EEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCE
T ss_pred cccccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEE
Confidence 11 1111111 2222333457899999988743 3589999876542211 00 00000 00112
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 130 ALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
...++++.++.+...+.+.+++..+.
T Consensus 188 ~~~~~G~~~~~g~~~~~~~~~~~~~~ 213 (387)
T d1k3ia3 188 FGWKKGSVFQAGPSTAMNWYYTSGSG 213 (387)
T ss_dssp EECGGGCEEECCSSSEEEEEECSTTC
T ss_pred EEeCCCCEEEecCcCCcEEecCcccC
Confidence 23346666666666666777666553
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.28 E-value=0.014 Score=43.64 Aligned_cols=49 Identities=12% Similarity=0.052 Sum_probs=35.9
Q ss_pred ecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE
Q 029743 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 89 ~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 137 (188)
+..|.+++.|+.||.++.+|.++|+.+.++.......-.-+.|..+|++
T Consensus 481 sTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ 529 (596)
T d1w6sa_ 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (596)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence 4457788889999999999999999998876543322233556668864
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.23 E-value=0.0067 Score=45.20 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=37.4
Q ss_pred eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE
Q 029743 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 88 ~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 137 (188)
.+..|.++++|+.||.++.+|.++|+.+..+.......-.-+.|..+|+.
T Consensus 493 lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 493 LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred eEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 35567788899999999999999999998876543322233677778864
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.13 E-value=0.0086 Score=44.53 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=35.1
Q ss_pred CCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCE
Q 029743 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (188)
Q Consensus 91 ~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 137 (188)
.+.++++|+.|+.++.+|.++|+.+.++.......-.-+.|..+|++
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq 520 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence 56678889999999999999999998876543322233666668864
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.80 E-value=0.018 Score=39.96 Aligned_cols=117 Identities=10% Similarity=-0.041 Sum_probs=69.1
Q ss_pred ceEEEEEEeCCCEEEEecCCC-----------eEEEEEeCCcccc-ccee-eeccCC-ceeEEeecCCCEEEEecCC-Ce
Q 029743 39 ELTSVVLMKNGRKVVCGSQSG-----------TVLLYSWGYFKDC-SDRF-VGLSPN-SVDALLKLDEDRVITGSEN-GL 103 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~-----------~i~~~d~~~~~~~-~~~~-~~~~~~-~v~~~~~~~~~~l~~~~~d-~~ 103 (188)
++...+...+|+.++.|+.+. .+.+||..+..-. .... .. +.. ....++.++|++++.|+.+ ..
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~-~~~~~~~~~~~~~g~i~v~Gg~~~~~ 99 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK-HDMFCPGISMDGNGQIVVTGGNDAKK 99 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-CCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC-cccceeEEEEecCCcEEEeecCCCcc
Confidence 333444445788888776421 3678998753211 1111 11 211 1223367899999988754 67
Q ss_pred EEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCC------CcEEEEeCCCcc
Q 029743 104 ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------SMLKLWDLDDIL 156 (188)
Q Consensus 104 v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~ 156 (188)
+.+||..+..-...-.......-..++..+|++.++.++.+ ..+.+||..+..
T Consensus 100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 100 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 99999987664322111111123456777899998888743 368999988754
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.70 E-value=0.037 Score=36.66 Aligned_cols=153 Identities=8% Similarity=-0.041 Sum_probs=90.4
Q ss_pred eeecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEE-EecCCCeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
+|.+..+.|+-.. ..+.|+..++........+......+.++++..-++.|+ +-...+.|.+.+++. .....+...
T Consensus 42 d~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg--~~~~~l~~~ 119 (263)
T d1npea_ 42 AFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRVLFDT 119 (263)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC--ceEEEEecc
Confidence 4566666666554 346677777765544434433335688999987666665 445567899999864 333333320
Q ss_pred cCCceeEE-eecCCCEEEEec-C--CCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEE-eCCCcEEEEeCCC
Q 029743 80 SPNSVDAL-LKLDEDRVITGS-E--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWDLDD 154 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~-~--d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 154 (188)
....+..+ ..|...+++-.. . ...|.-.++............-. ...+|++.+.++.|..+ ...+.|...++..
T Consensus 120 ~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~-~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g 198 (263)
T d1npea_ 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG-LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (263)
T ss_dssp SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccc-ccceEEEeecCcEEEEEeCCCCEEEEEECCC
Confidence 33456777 688666655432 2 23354445543332222222213 56789999887777655 4567898888876
Q ss_pred ccC
Q 029743 155 ILK 157 (188)
Q Consensus 155 ~~~ 157 (188)
...
T Consensus 199 ~~~ 201 (263)
T d1npea_ 199 PGR 201 (263)
T ss_dssp EEE
T ss_pred CCe
Confidence 543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.045 Score=36.27 Aligned_cols=151 Identities=11% Similarity=-0.100 Sum_probs=87.3
Q ss_pred eeecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEec--CCCeEEEEEeCCcccccceeee
Q 029743 2 TFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 2 ~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
++.+-++.|+.+. ..+.|.+.++........+.........++..|...+++... ..+.|...+++ +.....+..
T Consensus 83 AvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d--Gs~~~~l~~ 160 (266)
T d1ijqa1 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 160 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEEC
T ss_pred EEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC--CCceecccc
Confidence 4455455555553 456788888876655444444456688999999666665543 33456566654 344444432
Q ss_pred ccCCceeEE-eecCCCEEEEe-cCCCeEEEEecccCeeeeecccCCC-cceeEEEeeCCCCEEEEE-eCCCcEEEEeCCC
Q 029743 79 LSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSI-SHDSMLKLWDLDD 154 (188)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 154 (188)
..-.....+ +.+.++.|+.+ ...+.|...++........+..... ....++++. +..|..+ ..++.|...+..+
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~ 238 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 238 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCC
Confidence 033445667 67766655554 5678899888865443222222211 135567776 3445444 4667887777666
Q ss_pred cc
Q 029743 155 IL 156 (188)
Q Consensus 155 ~~ 156 (188)
+.
T Consensus 239 g~ 240 (266)
T d1ijqa1 239 GS 240 (266)
T ss_dssp CC
T ss_pred Cc
Confidence 54
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.58 E-value=0.066 Score=38.06 Aligned_cols=134 Identities=10% Similarity=0.042 Sum_probs=79.8
Q ss_pred EEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCC---------------eE----------------------
Q 029743 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG---------------TV---------------------- 61 (188)
Q Consensus 19 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i---------------------- 61 (188)
+.++|..+.+....+.. ......+.++++|+++++.+.+. .+
T Consensus 175 ~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing 253 (459)
T d1fwxa2 175 FTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 253 (459)
T ss_dssp EEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence 56778888777666653 34567889999999998866431 12
Q ss_pred -EEEEeCCc-cccc-ceeeeccCCceeEE-eecCCCEEEEec-CCCeEEEEecccCe--------eeeecccCC--Ccce
Q 029743 62 -LLYSWGYF-KDCS-DRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNR--------IIQPIAEHS--EYPI 126 (188)
Q Consensus 62 -~~~d~~~~-~~~~-~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~v~~~d~~~~~--------~~~~~~~~~--~~~v 126 (188)
.+-|.+.. +... ..+.. .++ ...+ .+|||+++++++ .+.++.++|++.-. +...+.+.. +-..
T Consensus 254 V~VVD~~~~~~~~v~~yIPV-pKs-PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgP 331 (459)
T d1fwxa2 254 VKVVDGRKEASSLFTRYIPI-ANN-PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 331 (459)
T ss_dssp EEEEECSGG--CSSEEEEEE-ESS-CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCE
T ss_pred ceeecccccCCcceeEEEec-CCC-CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCc
Confidence 33333210 1111 11222 233 3445 799999987665 68899999986321 111111110 1123
Q ss_pred eEEEeeCCCCEEEEEeCCCcEEEEeCCCc
Q 029743 127 ESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (188)
Q Consensus 127 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (188)
..-+|...|.-..+---|.+|--|++...
T Consensus 332 Lht~fd~~g~aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 332 LHTAFDGRGNAYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred cccccCCCceEEEEeeccceEEEEecchh
Confidence 45678887755555568999999998643
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.40 E-value=0.068 Score=36.11 Aligned_cols=72 Identities=11% Similarity=0.045 Sum_probs=49.6
Q ss_pred eecccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeee
Q 029743 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (188)
Q Consensus 3 ~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 78 (188)
.+|..+.||.-+ ..++.++|+++.+.++... ....|.-=.|-.+ +.|+..+ +..|+-|+++....+.+.+..
T Consensus 70 MhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR 141 (327)
T d1utca2 70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDR 141 (327)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred cCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhh
Confidence 468888887776 5789999999998888776 3456766677644 3444433 347999998654455555554
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.32 E-value=0.077 Score=35.87 Aligned_cols=145 Identities=14% Similarity=0.068 Sum_probs=85.2
Q ss_pred eecccCeEEEEe---C----CCcEEEEEcCCCceeeeecccccceEEEEEEeC--C-CEEEEe---cCCCeEEEEEeCCc
Q 029743 3 FAADAMKLLGTS---G----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN--G-RKVVCG---SQSGTVLLYSWGYF 69 (188)
Q Consensus 3 ~s~~~~~l~~~~---~----d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~l~~~---~~d~~i~~~d~~~~ 69 (188)
.+++.++++..+ . .|.+.+|..+.+. -+.+.+|.+....+....+ . ..++.+ ...+.+++.++...
T Consensus 155 ~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~ 233 (327)
T d1utca2 155 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 233 (327)
T ss_dssp ECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCC
T ss_pred ECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCC
Confidence 456777766543 1 3677888877543 3566777554444433211 1 122222 22367888888652
Q ss_pred cccccee--------ee--ccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEE
Q 029743 70 KDCSDRF--------VG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (188)
Q Consensus 70 ~~~~~~~--------~~--~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 138 (188)
...-..+ .. ......-++ .++....++.-+..|.|++||+.++.++..-+-..+ .|...+-+.+..-+
T Consensus 234 ~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~-~iF~~a~~~~~~Gi 312 (327)
T d1utca2 234 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGI 312 (327)
T ss_dssp CTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEE
T ss_pred ccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCC-ceEEeccCCCCceE
Confidence 2111111 11 012223344 677778888999999999999999998876554444 67655555555556
Q ss_pred EEEeCCCcEEE
Q 029743 139 GSISHDSMLKL 149 (188)
Q Consensus 139 ~~~~~d~~i~i 149 (188)
+.....|.|..
T Consensus 313 ~~VNr~GqVl~ 323 (327)
T d1utca2 313 IGVNRKGQVLS 323 (327)
T ss_dssp EEEETTSEEEE
T ss_pred EEECCCCeEEE
Confidence 66667777654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.25 E-value=0.075 Score=35.10 Aligned_cols=152 Identities=5% Similarity=-0.139 Sum_probs=86.5
Q ss_pred eeecccCeEEEEe-CCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC-CeEEEEEeCCcccccceeeec
Q 029743 2 TFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 2 ~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~~~ 79 (188)
++..-++.|+.+. ..+.|.+.++........+......+..+++.|...+++..... +..+++.....+.....+...
T Consensus 85 AvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~ 164 (263)
T d1npea_ 85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD 164 (263)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT
T ss_pred EEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee
Confidence 3444455555443 45678888876554332333333568899999977666644322 233455443333333333320
Q ss_pred cCCceeEE-eecCCCEEEEe-cCCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEE-eCCCcEEEEeCCCcc
Q 029743 80 SPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWDLDDIL 156 (188)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~ 156 (188)
.-.....+ +.+.++.|+.. ...+.|...++........+.+. . ...+|++. +..|... ...+.|...|..++.
T Consensus 165 ~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC-C-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCc
Confidence 22445667 67776666544 56788999998755544344443 2 34678876 3455444 456788888887655
Q ss_pred C
Q 029743 157 K 157 (188)
Q Consensus 157 ~ 157 (188)
.
T Consensus 241 ~ 241 (263)
T d1npea_ 241 E 241 (263)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.18 E-value=0.1 Score=35.90 Aligned_cols=152 Identities=11% Similarity=0.072 Sum_probs=83.0
Q ss_pred eeecccCeEEEEeC------------CCcEEEEEcCCCcee-eeec--c-----cccceEEEEEE--eCCC-EEEEe---
Q 029743 2 TFAADAMKLLGTSG------------DGTLSVCNLRKNTVQ-TRSE--F-----SEEELTSVVLM--KNGR-KVVCG--- 55 (188)
Q Consensus 2 ~~s~~~~~l~~~~~------------d~~i~i~~~~~~~~~-~~~~--~-----~~~~v~~~~~~--~~~~-~l~~~--- 55 (188)
+..|+|..+++++. .|.|.++|+.+.... ..+. + ..-....+... ++++ +|++.
T Consensus 41 ~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~ 120 (340)
T d1v04a_ 41 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP 120 (340)
T ss_dssp EECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred EECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEecc
Confidence 45688877766542 388999998764321 1111 1 11234555543 3454 34443
Q ss_pred cCCCeEEEEEeCCccccccee---eeccCCceeEE-eecCCCEEEEecC---------------CCeEEEEecccCeeee
Q 029743 56 SQSGTVLLYSWGYFKDCSDRF---VGLSPNSVDAL-LKLDEDRVITGSE---------------NGLISLVGILPNRIIQ 116 (188)
Q Consensus 56 ~~d~~i~~~d~~~~~~~~~~~---~~~~~~~v~~~-~~~~~~~l~~~~~---------------d~~v~~~d~~~~~~~~ 116 (188)
....+|.+|++......+... ..........+ +..++.++++-.. -+...+|....+....
T Consensus 121 ~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~ 200 (340)
T d1v04a_ 121 GSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV 200 (340)
T ss_dssp TTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEE
T ss_pred CCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEE
Confidence 245689999986533322222 11011234566 5677777777311 0123344333343332
Q ss_pred ecccCCCcceeEEEeeCCCCEEEEE-eCCCcEEEEeCCCc
Q 029743 117 PIAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWDLDDI 155 (188)
Q Consensus 117 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~ 155 (188)
...+. . ..+.++++||+++|+.+ +..+.|++|++...
T Consensus 201 ~~~~l-~-~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 201 VAEGF-D-FANGINISPDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp EEEEE-S-SEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred EcCCC-C-ccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence 23332 2 47899999999887655 46788999998753
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.00 E-value=0.13 Score=35.56 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=86.6
Q ss_pred cccCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEe----CCC--EEEEec-CC---CeEEEEEeCCcccccc
Q 029743 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK----NGR--KVVCGS-QS---GTVLLYSWGYFKDCSD 74 (188)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~--~l~~~~-~d---~~i~~~d~~~~~~~~~ 74 (188)
|+..+++.....+-|++||+. |+.+..++ .+++..+.... .++ -++.++ .+ .+|.+|.+......+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 456677777777779999986 66666654 34566665442 222 244444 22 3688888853222232
Q ss_pred eeee------ccCCceeEE--e-ecC-CC-EEEEecCCCeEEEEeccc---C----eeeeecccCCCcceeEEEeeCCCC
Q 029743 75 RFVG------LSPNSVDAL--L-KLD-ED-RVITGSENGLISLVGILP---N----RIIQPIAEHSEYPIESLALSHDRK 136 (188)
Q Consensus 75 ~~~~------~~~~~v~~~--~-~~~-~~-~l~~~~~d~~v~~~d~~~---~----~~~~~~~~~~~~~v~~~~~~~~~~ 136 (188)
.+.. .....+..+ + ++. |. ++++...+|.+..|.+.. + +.++.+.... .+..+.+.+...
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~--q~EGCVvDde~~ 192 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS--QTEGMAADDEYG 192 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS--CEEEEEEETTTT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC--ccceEEEeCCCC
Confidence 2221 011123444 3 554 54 466677889998887632 2 3455565543 688999999888
Q ss_pred EEEEEeCCCcEEEEeCC
Q 029743 137 FLGSISHDSMLKLWDLD 153 (188)
Q Consensus 137 ~l~~~~~d~~i~iwd~~ 153 (188)
.|..+-++..|..++..
T Consensus 193 ~LyisEE~~Giw~~~a~ 209 (353)
T d1h6la_ 193 SLYIAEEDEAIWKFSAE 209 (353)
T ss_dssp EEEEEETTTEEEEEESS
T ss_pred cEEEecCccceEEEEec
Confidence 99888877766666654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.79 E-value=0.18 Score=35.61 Aligned_cols=95 Identities=8% Similarity=0.022 Sum_probs=57.9
Q ss_pred eeecccCeEEEEeC-C----CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCC----------------Ce
Q 029743 2 TFAADAMKLLGTSG-D----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----------------GT 60 (188)
Q Consensus 2 ~~s~~~~~l~~~~~-d----~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------~~ 60 (188)
++||++++++.+-. . ..|+++|+.+++.+.... .......++|.++++.|+....+ ..
T Consensus 131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~ 209 (430)
T d1qfma1 131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (430)
T ss_dssp EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred EecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccCCcce
Confidence 57899999886532 2 378999999997654221 11223578999999988754322 25
Q ss_pred EEEEEeCCccccc-ceeeeccCCc--eeEE-eecCCCEEEEe
Q 029743 61 VLLYSWGYFKDCS-DRFVGLSPNS--VDAL-LKLDEDRVITG 98 (188)
Q Consensus 61 i~~~d~~~~~~~~-~~~~~~~~~~--v~~~-~~~~~~~l~~~ 98 (188)
+..+.+.+....- ..+.. .... ...+ .++++++++..
T Consensus 210 v~~h~lgt~~~~d~~v~~e-~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 210 LYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp EEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEE
T ss_pred EEEEECCCCcccccccccc-ccCCceEEeeeccCCcceeeEE
Confidence 7777776532222 22222 2222 3344 47899987643
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.60 E-value=0.27 Score=36.17 Aligned_cols=55 Identities=7% Similarity=-0.037 Sum_probs=38.5
Q ss_pred CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 102 GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 102 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
|.|.-+|+.+++.+.++.... +..+-.+.-.+.++..++.|+.++.+|.++++..
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~--~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L 492 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEeCCCCeEeeeccCCC--CCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence 457788888888776654332 2332233445667888899999999999998743
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.47 E-value=0.064 Score=39.79 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=51.1
Q ss_pred CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCCc-eeEE-eecCCC-
Q 029743 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS-VDAL-LKLDED- 93 (188)
Q Consensus 17 ~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-v~~~-~~~~~~- 93 (188)
|.|.-+|+.+++.+...+.+ .++.+-..+..+.++++++.|+.++-+|..+ ++.+-.+.- .... -.-+ +..+|+
T Consensus 466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~T-Ge~LW~~~~-~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQT-GSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC-SSCCCSCCEEEEETTEE
T ss_pred CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCC-CcEeEEEEC-CCCccccCEEEEECCEE
Confidence 56778888888888777633 3333333456778888999999999999988 566655543 2222 1123 567885
Q ss_pred EEEE
Q 029743 94 RVIT 97 (188)
Q Consensus 94 ~l~~ 97 (188)
|++.
T Consensus 543 Yv~i 546 (582)
T d1flga_ 543 YLGV 546 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.22 Score=32.81 Aligned_cols=152 Identities=11% Similarity=-0.027 Sum_probs=84.4
Q ss_pred eeecccCeEEEEe-CCCcEEEEEcCCC----ceeeeecccccceEEEEEEeCCCEEEEe-cCCCeEEEEEeCCcccccce
Q 029743 2 TFAADAMKLLGTS-GDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDR 75 (188)
Q Consensus 2 ~~s~~~~~l~~~~-~d~~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~ 75 (188)
+|++..+.|+-.. ..+.|+..++... .....+......+.++++.+.++.|+.+ ...+.|.+.+++. ......
T Consensus 36 d~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g-~~~~~~ 114 (266)
T d1ijqa1 36 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTL 114 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEE
T ss_pred EEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC-ceEEEE
Confidence 4555555555543 2344554444321 1111222223456788888766655554 4567899999864 233333
Q ss_pred eeeccCCceeEE-eecCCCEEEEec--CCCeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEE-eCCCcEEEEe
Q 029743 76 FVGLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWD 151 (188)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd 151 (188)
+.. .......+ .+|...+++... ..+.|.-.++............-. ...++++.+.++.|..+ ...+.|...+
T Consensus 115 ~~~-~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~-~p~gl~iD~~~~~lYw~d~~~~~I~~~~ 192 (266)
T d1ijqa1 115 FRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSID 192 (266)
T ss_dssp EEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EcC-CCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccc-eeeEEEeeccccEEEEecCCcCEEEEEE
Confidence 333 44556777 577555554332 345677677654333322222223 57899999887777655 4567888888
Q ss_pred CCCcc
Q 029743 152 LDDIL 156 (188)
Q Consensus 152 ~~~~~ 156 (188)
+....
T Consensus 193 ~dG~~ 197 (266)
T d1ijqa1 193 VNGGN 197 (266)
T ss_dssp TTSCS
T ss_pred CCCCC
Confidence 86543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.21 E-value=0.37 Score=35.47 Aligned_cols=55 Identities=16% Similarity=-0.005 Sum_probs=35.6
Q ss_pred CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCCcEEEEeCCCccCC
Q 029743 102 GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (188)
Q Consensus 102 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (188)
|.|.-+|+.+++.+.+..... +..+-.+.-.+..+++++.|+.++.+|.++++..
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~--~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l 498 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccEEEeccCCCceeeEcCCCC--CCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence 457777777777766554321 1222122334667778999999999999987643
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.60 E-value=0.11 Score=38.50 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=40.1
Q ss_pred cEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceee
Q 029743 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (188)
Q Consensus 18 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 77 (188)
.|.-||+.+++.+...+.. .+...-..+..+.++++++.|+.++.+|..+ ++.+-.+.
T Consensus 458 ~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~T-Ge~LW~~~ 515 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAP 515 (573)
T ss_dssp EEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred cEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCC-CcEeEEEE
Confidence 5667788888877766532 2222223445688888999999999999987 56665554
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.03 E-value=0.62 Score=32.74 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=57.2
Q ss_pred ceEEEEEEeCCCEEEEec-C----CCeEEEEEeCCcccccc-eeeeccCCceeEE-eecCCCEEEEecC-----------
Q 029743 39 ELTSVVLMKNGRKVVCGS-Q----SGTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKLDEDRVITGSE----------- 100 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~-~----d~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~----------- 100 (188)
.+...+++|++++++.+- . ...++++|+.++ +.+. .+.. . ....+ |.++++.|+....
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg-~~~~~~i~~--~-~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA-KELPDVLER--V-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT-EEEEEEEEE--E-CSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcc-eeccccccc--c-cccceEEcCCCCEEEEEEeccccCcccccc
Confidence 345677899999887532 2 347999999874 3332 2222 1 12334 7889887764332
Q ss_pred -----CCeEEEEecccCee--eeecccCCC-cceeEEEeeCCCCEEEEE
Q 029743 101 -----NGLISLVGILPNRI--IQPIAEHSE-YPIESLALSHDRKFLGSI 141 (188)
Q Consensus 101 -----d~~v~~~d~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 141 (188)
...|+.+.+.+... ...+....+ ..+..+..+.++++++..
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence 22577777765432 222222211 235667788999987643
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=93.94 E-value=0.16 Score=37.81 Aligned_cols=78 Identities=12% Similarity=0.015 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCcccccceeeeccCC-ceeEE-eecCCC-
Q 029743 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-SVDAL-LKLDED- 93 (188)
Q Consensus 17 ~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~-~~~~~~- 93 (188)
|.|.-||+.+++.+.... +..+..+-.++..+.++++|+.|+.++-+|.++ ++.+-.+.- ... ...-+ +..+|+
T Consensus 453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~T-Ge~LW~~~~-~~~~~a~P~tY~~dGkQ 529 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDT-GDLLWKFKI-PSGAIGYPMTYTHKGTQ 529 (596)
T ss_dssp EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC-SSCCCSCCEEEEETTEE
T ss_pred ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCC-CcEeeEEEC-CCCcccCCeEEEECCEE
Confidence 467778888887766544 223333333455678888999999999999987 566655543 221 11122 556776
Q ss_pred EEEE
Q 029743 94 RVIT 97 (188)
Q Consensus 94 ~l~~ 97 (188)
|++.
T Consensus 530 Yvav 533 (596)
T d1w6sa_ 530 YVAI 533 (596)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.01 E-value=1.4 Score=31.26 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=33.1
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCCCceee--eec------ccccceEEEEEEeC
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSE------FSEEELTSVVLMKN 48 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~--~~~------~~~~~v~~~~~~~~ 48 (188)
|+|.|++++|++--..|.|++++..++.... .+. .-......|+++|+
T Consensus 32 la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred EEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 5789999888776447999999877764422 111 11346789999984
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.68 E-value=1.4 Score=30.59 Aligned_cols=132 Identities=9% Similarity=0.009 Sum_probs=73.4
Q ss_pred CeeecccCeEEEEeCCCcEEEEEcCC---------CceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccc
Q 029743 1 MTFAADAMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (188)
Q Consensus 1 l~~s~~~~~l~~~~~d~~i~i~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 71 (188)
|+.++...+++.|+.+ .++|..... ..........-..|..++|+.+ .|+.. .++.+..++...- .
T Consensus 42 LAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~l-~ 116 (381)
T d1xipa_ 42 LDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEEL-S 116 (381)
T ss_dssp EEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSST-T
T ss_pred EEEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeecc-c
Confidence 3566666677777765 466666321 1111111111235888999644 45554 3456778877542 2
Q ss_pred ccceeeeccCCceeEE-eecCCCEEEEecCCCeEEEEecccCeeeeec------ccCCCcceeEEEeeCCCCEEEEEe
Q 029743 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI------AEHSEYPIESLALSHDRKFLGSIS 142 (188)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~ 142 (188)
....... ...++..+ .+| ..++....++.+.++++..+...... .-. + .+.+++|++.+..++++.
T Consensus 117 ~~~~~~~-~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~-~-~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 117 EFRTVTS-FEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVT-N-SQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp CEEEEEE-CSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEEC-S-SEEEEEETTSCEEEEEEE
T ss_pred ccccccc-ccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEec-C-CceEEEEeCCcEEEEEeC
Confidence 2222222 33455555 344 45666677888889998876532211 111 3 578888988888887764
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.94 E-value=1.7 Score=30.16 Aligned_cols=127 Identities=13% Similarity=0.040 Sum_probs=65.8
Q ss_pred CeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCCCEEEEecCCCeEEEEEeCCccccccee-----eeccCC
Q 029743 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-----VGLSPN 82 (188)
Q Consensus 8 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~ 82 (188)
..|+.. .++.+..++...-...........++.++.++|. .++....++.+.++++...+ ..... .. -..
T Consensus 97 d~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~-~~~~~~~v~~~~-~~~ 171 (381)
T d1xipa_ 97 DQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS-TKQLAQNVTSFD-VTN 171 (381)
T ss_dssp TEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-EEEEEESEEEEE-ECS
T ss_pred CEEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCc-cccccCCcceEE-ecC
Confidence 345544 3456777776654333333334556788887764 56666678889999986532 11111 11 124
Q ss_pred ceeEE-eecCCCEEEEecCCCeEEEE-ecccCeeeeecccCCCcceeEEEeeCCCCEEEEE
Q 029743 83 SVDAL-LKLDEDRVITGSENGLISLV-GILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~v~~~-d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
.+.++ +++.|..++++..++ ..+- ++.....+..-... +..|.++.|-.+..++++-
T Consensus 172 ~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~-~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 172 SQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp SEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEE
T ss_pred CceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCC-CcceeEEEEecCceEEEEE
Confidence 45566 677777776663322 2111 11111111110111 2267888888777666544
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.72 E-value=1.7 Score=29.81 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=69.3
Q ss_pred ceEEEEE--EeC-CC-EEEEecCCCeEEEEEeCCcc------cccceeeeccCCceeEEeecCCCEEEEecCCCeEEEEe
Q 029743 39 ELTSVVL--MKN-GR-KVVCGSQSGTVLLYSWGYFK------DCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVG 108 (188)
Q Consensus 39 ~v~~~~~--~~~-~~-~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~~~d 108 (188)
.+..+|+ ++. +. ++++...+|.+..|.+...+ ..++.+.- ....-.|++......|+.+-.+..|+.++
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~ 207 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFS 207 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcEEEecCccceEEEE
Confidence 3667776 553 43 56677788999988874211 23334443 33333444888888999988887777776
Q ss_pred ccc-----Ceeeeeccc-CCCcceeEEEeeC--CCC-EEEEEe-CCCcEEEEeCCCc
Q 029743 109 ILP-----NRIIQPIAE-HSEYPIESLALSH--DRK-FLGSIS-HDSMLKLWDLDDI 155 (188)
Q Consensus 109 ~~~-----~~~~~~~~~-~~~~~v~~~~~~~--~~~-~l~~~~-~d~~i~iwd~~~~ 155 (188)
... +..+....+ +-.+.+..|+.-. ++. +|++.+ .+++..+||....
T Consensus 208 a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 208 AEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp SSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred eccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 542 122222222 1123577777653 333 555444 6789999998764
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.77 E-value=1.6 Score=29.73 Aligned_cols=103 Identities=9% Similarity=0.147 Sum_probs=58.8
Q ss_pred ceEEEEEEeCCCEEEEecC------------CCeEEEEEeCCcccccceeeec-cC-----CceeEE--e-ecCCCE-EE
Q 029743 39 ELTSVVLMKNGRKVVCGSQ------------SGTVLLYSWGYFKDCSDRFVGL-SP-----NSVDAL--L-KLDEDR-VI 96 (188)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~------------d~~i~~~d~~~~~~~~~~~~~~-~~-----~~v~~~--~-~~~~~~-l~ 96 (188)
....++..|+|..+++++. .|.|.++|+.........+.-. .. -....+ + .++|+. |+
T Consensus 36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~ 115 (340)
T d1v04a_ 36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 115 (340)
T ss_dssp CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence 4557888888877776542 4889999987543333332210 11 112333 2 456663 44
Q ss_pred Eec---CCCeEEEEecccCe----eeeecccCCCcceeEEEeeCCCCEEEEE
Q 029743 97 TGS---ENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDRKFLGSI 141 (188)
Q Consensus 97 ~~~---~d~~v~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 141 (188)
+.. ...+|.+|++.... .+.++....-...+++++..++.+++|-
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tn 167 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATN 167 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEE
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEec
Confidence 432 45678888876432 2233333332357888988888888773
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.44 E-value=1.7 Score=27.83 Aligned_cols=145 Identities=13% Similarity=0.110 Sum_probs=74.0
Q ss_pred cCeEEEEeCCCcEEEEEcCCCceeeeecccccceEEEEEEeCC-CEEEE------ecCCCeEEEEEeCCcccccceeeec
Q 029743 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVC------GSQSGTVLLYSWGYFKDCSDRFVGL 79 (188)
Q Consensus 7 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~------~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (188)
.++++.+...|.+.++-+..++.++.-+ .+|....--..+ ..+.. |-....+.+-++...++..+ +..
T Consensus 26 d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~-i~s- 100 (313)
T d2hu7a1 26 DKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQR-LEA- 100 (313)
T ss_dssp TEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEE-CTT-
T ss_pred CcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeE-ecC-
Confidence 4577888788999999888776654332 233222211111 12211 11223444445432222222 221
Q ss_pred cC-CceeEEeecCCCEEEEecCCCeEEEEecccCeeeee--cccCC------CcceeEEE-eeCCCCEEEEEeC-CCcEE
Q 029743 80 SP-NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQP--IAEHS------EYPIESLA-LSHDRKFLGSISH-DSMLK 148 (188)
Q Consensus 80 ~~-~~v~~~~~~~~~~l~~~~~d~~v~~~d~~~~~~~~~--~~~~~------~~~v~~~~-~~~~~~~l~~~~~-d~~i~ 148 (188)
.+ -.+.++...+.+..++|+......+|-+..|+.... +.... +.-|..+. +.++.+-+.++.. .|.++
T Consensus 101 pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr 180 (313)
T d2hu7a1 101 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 180 (313)
T ss_dssp SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred CceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence 11 233344455667788888888888998887764322 22210 00233333 3344444555555 77888
Q ss_pred EEeCCCcc
Q 029743 149 LWDLDDIL 156 (188)
Q Consensus 149 iwd~~~~~ 156 (188)
+++...+.
T Consensus 181 i~tpkeGS 188 (313)
T d2hu7a1 181 VFDSGEGS 188 (313)
T ss_dssp EECCSSEE
T ss_pred EecCCCCc
Confidence 88766543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.31 E-value=1.8 Score=27.94 Aligned_cols=67 Identities=9% Similarity=0.022 Sum_probs=35.2
Q ss_pred ecCCCEEEEecCC-----CeEEEEecccCeeeeecccCCCcceeEEEeeCCCCEEEEEeCCC-----cEEEEeCCCcc
Q 029743 89 KLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS-----MLKLWDLDDIL 156 (188)
Q Consensus 89 ~~~~~~l~~~~~d-----~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~ 156 (188)
...+..++.|+.+ ..+..+|..+.+....-.......-.+++. .+++.++.|+.++ .|.+||+.+..
T Consensus 193 ~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 193 VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 3345666666543 346778877655433211111101112333 3677777776543 37889988643
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.78 E-value=2.2 Score=27.24 Aligned_cols=135 Identities=9% Similarity=0.084 Sum_probs=68.7
Q ss_pred ccCeEEEEeCCCcEEEEEcCCCceeeeecc-cccceEEE--------EE-EeCCCEEEEecC-CCeEEEEEeCCcccccc
Q 029743 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSV--------VL-MKNGRKVVCGSQ-SGTVLLYSWGYFKDCSD 74 (188)
Q Consensus 6 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~v~~~--------~~-~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~ 74 (188)
+.+..++|+......+|-++.|+..+...- .-+-|+.+ -+ .++.+.++++.- .|.+++++..
T Consensus 113 dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpk------- 185 (313)
T d2hu7a1 113 GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG------- 185 (313)
T ss_dssp SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECCS-------
T ss_pred CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecCC-------
Confidence 345567777778888888888765432221 11223332 22 222233444444 4555555443
Q ss_pred eeeeccCCceeEE-eecCCCEEEEec----CCCeEEEEecccCeeee-eccc-----CCCcceeEEEeeCCCCEEEEEeC
Q 029743 75 RFVGLSPNSVDAL-LKLDEDRVITGS----ENGLISLVGILPNRIIQ-PIAE-----HSEYPIESLALSHDRKFLGSISH 143 (188)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~----~d~~v~~~d~~~~~~~~-~~~~-----~~~~~v~~~~~~~~~~~l~~~~~ 143 (188)
.+.+... ..+..+. +++- ...-| -+|+++++--. .+.. -..-.|+-+-+.|+++.++.+-.
T Consensus 186 ------eGS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakr 257 (313)
T d2hu7a1 186 ------EGSFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR 257 (313)
T ss_dssp ------SEEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred ------CCcccceeEccCcee-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEec
Confidence 3333333 2333332 2221 12223 34776554221 1111 11113555668999999888889
Q ss_pred CCcEEEEeCCCc
Q 029743 144 DSMLKLWDLDDI 155 (188)
Q Consensus 144 d~~i~iwd~~~~ 155 (188)
||.-++|.-...
T Consensus 258 dG~s~lF~nGk~ 269 (313)
T d2hu7a1 258 EGRSAVFIDGER 269 (313)
T ss_dssp TTEEEEEETTEE
T ss_pred CCchheeecceE
Confidence 999888875443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.88 E-value=3.8 Score=28.91 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=25.4
Q ss_pred cceEEEEEEeCCCEEEEecCCCeEEEEEeCC
Q 029743 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (188)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 68 (188)
...++|+|.|+++++++.-..|.|++++...
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~ 57 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPES 57 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCC
Confidence 4678999999999988876678998887654
|