Citrus Sinensis ID: 029745

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MSFTAASDTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGGDSARGSYTGLQT
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHcccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHccccHHHHHccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccccccEEEEccccccccccccccc
Coil and Loop (DISEMBL)
msftaasdtgFLSRVKRTTQsinatrrpwsdfldlsafnlplslsdaTTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYfarddpltvlgfqvddRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFrstddlvmedqespfgvllddlggdsargsytglqt
Flexible Loop (DISEMBL)
msftaasdtgflsrvkrttqsinatrrpwsdfLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFgvllddlggdsargsytglqt
Low Complexity Region (SEG)
MSFTAASDTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGlvlthvwvnvlvsvvvgavlvilHAWFRSTDDLVMEDQESPFGVLLDDLGGDSARGSYTGLQT
Disordered region (IsUnstruct)
*********************INATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMED***PFGVLLD****************
Disordered Region (DISOPRED)
***********************ATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVL******************
Disordered Region (DISEMBL)
MSFTAASDTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGGDSARGSYTGLQT
Disordered Region (DISPRO)
*****A*DTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGV*LDDLG*************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSFTAASDTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGGDSARGSYTGLQT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
P93829	182	PRA1 family protein D OS=	yes	no	0.930	0.961	0.514	1e-47
Q9C889	189	PRA1 family protein F2 OS	no	no	0.861	0.857	0.456	5e-36
Q9FRR1	209	PRA1 family protein E OS=	no	no	0.914	0.822	0.431	2e-32
Q9LIC7	188	PRA1 family protein F4 OS	no	no	0.819	0.819	0.448	1e-31
Q9LIC6	188	PRA1 family protein F3 OS	no	no	0.840	0.840	0.443	5e-30
Q9FZ63	180	PRA1 family protein F1 OS	no	no	0.755	0.788	0.450	7e-26
O80915	220	PRA1 family protein B4 OS	no	no	0.888	0.759	0.325	2e-23
Q9FLB6	217	PRA1 family protein B3 OS	no	no	0.819	0.709	0.416	2e-22
Q9LYQ4	216	PRA1 family protein B6 OS	no	no	0.776	0.675	0.381	1e-21
Q9M012	223	PRA1 family protein B5 OS	no	no	0.824	0.695	0.356	1e-21

>sp|P93829|PRA1D_ARATH PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1

 Score =  189 bits (479), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 125/177 (70%), Gaps = 2/177 (1%)

Query: 12  LSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALF 71
           ++ +K T QSI    RPW DFLDLSAF+ P S++DATTR+TQNLTHFR NY++I  + L 
Sbjct: 6   ITGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLG 65

Query: 72  LSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHV 131
           L+LI  P++I+ F+   +AWFFLYFAR++PLT+ GF +DD +V   L  +++  LV T V
Sbjct: 66  LTLITRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGV 125

Query: 132 WVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGG--DSARGSYTGL 186
           W+  L +V  G +++ILHA  R TDDLV +D ESP+G +L   GG  D ARG Y+G+
Sbjct: 126 WLRALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSGGGNDGARGDYSGI 182

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C889|PR1F2_ARATH PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1

 Score =  150 bits (379), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 105/162 (64%)

Query: 4   TAASDTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYA 63
           + A D  ++SR K   +S  ATRRPW    D  +  LP    DA +RI  NL +FR+NYA
Sbjct: 14  SPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYA 73

Query: 64  VITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTV 123
           +  L  LFLSL+YHP S+IV  + +V W FLYF RD+PL V G+Q+DDR V+  L  +TV
Sbjct: 74  IGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVLIGLSVLTV 133

Query: 124 TGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQES 165
             L+LTH   N+L S++  AVLV++HA  R +D+L ++++ +
Sbjct: 134 VMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAA 175

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRR1|PRA1E_ARATH PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1

 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/174 (43%), Positives = 112/174 (64%), Gaps = 2/174 (1%)

Query: 13  SRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFL 72
           +R K+TTQS+  T RPW + LDLSA +LP    +A   +  N+++FR NYA+  L  +FL
Sbjct: 34  ARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFL 93

Query: 73  SLIYHPVSIIVFLLTLVAWFFLYFARD--DPLTVLGFQVDDRVVIGALFAVTVTGLVLTH 130
            LIYHP+S+I F++  + W  LYF+RD  D + + G +VDD++V+  L  VTV  LV T 
Sbjct: 94  GLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTD 153

Query: 131 VWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGGDSARGSYT 184
           V  NVLVS+++G ++V  H  FR+TDDL ++++ +  G L+    G+    SYT
Sbjct: 154 VGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSAGSGNRPPSSYT 207

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC7|PR1F4_ARATH PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 100/154 (64%)

Query: 12  LSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALF 71
           +SR K+  +   ATRR W    DL +  LP  +SD  +RI  NL +FRSNYA++ L  +F
Sbjct: 22  ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIF 81

Query: 72  LSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHV 131
            SLI+HP S+IVF   +  W FLYF RD PL V  FQ+DDR V+  L  +T+  L+LT+ 
Sbjct: 82  FSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNA 141

Query: 132 WVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQES 165
             N++ +++ GAVLV++HA  R TDDL ++++ +
Sbjct: 142 TFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAA 175

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC6|PR1F3_ARATH PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1

 Score =  130 bits (327), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 104/158 (65%)

Query: 8   DTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITL 67
           D   LSR K   ++  ATRR W    D  +  LP  +SDA TRI  NL +FR NYA++ L
Sbjct: 18  DVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVL 77

Query: 68  LALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLV 127
           + +F SLI+HP S+IVF + +V W FLYF RD+P+ +  FQ+DDR V+  L  +TV  L+
Sbjct: 78  IVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLTVVLLL 137

Query: 128 LTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQES 165
           LT+   N++ ++V GAVLV++H+  R T+DL ++++ +
Sbjct: 138 LTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAA 175

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ63|PR1F1_ARATH PRA1 family protein F1 OS=Arabidopsis thaliana GN=PRA1F1 PE=1 SV=1

 Score =  116 bits (291), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 95/142 (66%)

Query: 24  ATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIV 83
           ATRRPW   LDL +FN P  L+   TRI  N  +F++NY ++ L ++FLSLI++P S++V
Sbjct: 34  ATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLV 93

Query: 84  FLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGA 143
            L  L AW FLYF RD+PLTV   ++D R+V+  +  +T++ L LT   +N+ V++V GA
Sbjct: 94  LLALLGAWLFLYFLRDEPLTVFDREIDHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGA 153

Query: 144 VLVILHAWFRSTDDLVMEDQES 165
           + V+ HA  R T+DL   D+E+
Sbjct: 154 LAVLSHAAVRKTEDLFQTDEET 175

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|O80915|PR1B4_ARATH PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 2/169 (1%)

Query: 10  GFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLA 69
            F++++  T ++  + RRPW++  D SA + P S+SDA  RI +N ++F+ NY  +    
Sbjct: 38  NFINQITETVKNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAI 97

Query: 70  LFLSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTVTGLV 127
           +  SL+ HP S++  L  L +W FLY  R  D P+ + G    DR  +G L   ++  + 
Sbjct: 98  VGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIF 157

Query: 128 LTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGG 176
           LT V   ++ ++++G  L+  H  FR+ +DL +++QE      L  LGG
Sbjct: 158 LTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDEQEPAATGFLSFLGG 206

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB6|PR1B3_ARATH PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 93/156 (59%), Gaps = 2/156 (1%)

Query: 11  FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLAL 70
           FLSR+  + +   + RRPW + +D SA + P SL+DA +RI +NL +F+ NY  I  L L
Sbjct: 32  FLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVL 91

Query: 71  FLSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTVTGLVL 128
            LSL+ HP S++V L    AW FLY  R  D PL VLG    DR  +G L  +T+  + L
Sbjct: 92  ALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFL 151

Query: 129 THVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQE 164
           T V   +  ++++G  +V LH  FR  +DL ++DQE
Sbjct: 152 TSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQE 187

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYQ4|PR1B6_ARATH PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 93/152 (61%), Gaps = 6/152 (3%)

Query: 18  TTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFL--SLI 75
           T +  +A  RPW++ +D SAF+ P SLS+AT+R+ +N ++FR+NY  ITL+A+ L  SL+
Sbjct: 36  TVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANY--ITLVAILLAASLL 93

Query: 76  YHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWV 133
            HP ++ +      +W FLYF R  D PL + G    D   +G L   TV  + +T V  
Sbjct: 94  THPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGS 153

Query: 134 NVLVSVVVGAVLVILHAWFRSTDDLVMEDQES 165
            ++ ++ VG + V +H  FR+ +DL +E+QE+
Sbjct: 154 LLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEA 185

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M012|PR1B5_ARATH PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 10  GFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLA 69
            F++ V  T     +  RPWS+ LD SAF  P SLS+A TR  +N ++FR NY  I  L 
Sbjct: 38  AFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALI 97

Query: 70  LFLSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTVTGLV 127
           L  SL+ HP S+I+ L    +W FLY  R  D PL + G    +   +G L   T+  + 
Sbjct: 98  LGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIF 157

Query: 128 LTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQE 164
            T V   ++ ++++G   + +H  FR+ DDL +++Q+
Sbjct: 158 FTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQD 194

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
255551949	182	conserved hypothetical protein [Ricinus	0.888	0.917	0.597	4e-47
18379300	182	PRA1 family protein D [Arabidopsis thali	0.930	0.961	0.514	6e-46
21555645	182	unknown [Arabidopsis thaliana]	0.930	0.961	0.508	6e-45
297848644	177	hypothetical protein ARALYDRAFT_470402 [	0.914	0.971	0.508	1e-44
225432912	191	PREDICTED: PRA1 family protein D-like [V	0.957	0.942	0.548	4e-44
224085589	201	predicted protein [Populus trichocarpa]	0.930	0.870	0.483	9e-43
449432624	176	PREDICTED: PRA1 family protein D-like is	0.882	0.943	0.578	6e-41
147787959	206	hypothetical protein VITISV_021777 [Viti	0.904	0.825	0.5	3e-40
225453012	206	PREDICTED: PRA1 family protein E [Vitis	0.904	0.825	0.494	1e-39
224062230	195	predicted protein [Populus trichocarpa]	0.909	0.876	0.520	2e-39

>gi|255551949|ref|XP_002517019.1| conserved hypothetical protein [Ricinus communis] gi|223543654|gb|EEF45182.1| conserved hypothetical protein [Ricinus communis]

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 101/169 (59%), Positives = 130/169 (76%), Gaps = 2/169 (1%)

Query: 11  FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLAL 70
           F+S+ K+TTQS+NAT RPW  FLD+S+ N+P S+ DATTR+TQNLTHFRSNY++I LL L
Sbjct: 7   FISQFKQTTQSLNATVRPWPHFLDISSLNIPSSVPDATTRVTQNLTHFRSNYSLIILLVL 66

Query: 71  FLSLIYHPVSIIVFLLTLVAWFFLYFAR-DDPLTVLGFQVDDRVVIGALFAVTVTGLVLT 129
           FLSL+YHP+S+I F +TL+ W FLYFAR ++PL V GF+V+D VV+ +L AVT+  LV +
Sbjct: 67  FLSLVYHPLSLIAFFITLIGWVFLYFAREEEPLRVFGFEVNDFVVLVSLIAVTIFVLVWS 126

Query: 130 HVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQE-SPFGVLLDDLGGD 177
            VW NV V+V +G  LV+LHA  RSTDDLV +D E SP+  LL D   D
Sbjct: 127 GVWFNVAVAVAIGVGLVVLHAVLRSTDDLVADDIETSPYVNLLSDDDDD 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18379300|ref|NP_563704.1| PRA1 family protein D [Arabidopsis thaliana] gi|75101252|sp|P93829.1|PRA1D_ARATH RecName: Full=PRA1 family protein D; Short=AtPRA1.D; AltName: Full=CAMV MOVEMENT PROTEIN-INTERACTING PROTEIN 7; AltName: Full=Prenylated Rab acceptor 5 gi|13878041|gb|AAK44098.1|AF370283_1 unknown protein [Arabidopsis thaliana] gi|1903367|gb|AAB70450.1| ESTs gb|N65789,gb|T04628 come from this gene [Arabidopsis thaliana] gi|17104669|gb|AAL34223.1| unknown protein [Arabidopsis thaliana] gi|18072831|emb|CAC80648.1| prenylated Rab receptor 5 [Arabidopsis thaliana] gi|332189554|gb|AEE27675.1| PRA1 family protein D [Arabidopsis thaliana]

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 125/177 (70%), Gaps = 2/177 (1%)

Query: 12  LSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALF 71
           ++ +K T QSI    RPW DFLDLSAF+ P S++DATTR+TQNLTHFR NY++I  + L 
Sbjct: 6   ITGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLG 65

Query: 72  LSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHV 131
           L+LI  P++I+ F+   +AWFFLYFAR++PLT+ GF +DD +V   L  +++  LV T V
Sbjct: 66  LTLITRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGV 125

Query: 132 WVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGG--DSARGSYTGL 186
           W+  L +V  G +++ILHA  R TDDLV +D ESP+G +L   GG  D ARG Y+G+
Sbjct: 126 WLRALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSGGGNDGARGDYSGI 182

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21555645|gb|AAM63905.1| unknown [Arabidopsis thaliana]

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 124/177 (70%), Gaps = 2/177 (1%)

Query: 12  LSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALF 71
           ++ +K T QSI    RPW DFLDLSAF+ P S++DATTR+TQNLTHFR NY++I  + L 
Sbjct: 6   ITGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLG 65

Query: 72  LSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHV 131
           L+LI  P++I+ F+   +AWFFLYFAR++PLT+ GF +DD +V   L  +++  LV T V
Sbjct: 66  LTLITRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGV 125

Query: 132 WVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGG--DSARGSYTGL 186
           W+  L +V  G +++ILHA  R TDDLV +D ESP+G +L   GG  D ARG  +G+
Sbjct: 126 WLRALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSGGGNDGARGDNSGI 182

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848644|ref|XP_002892203.1| hypothetical protein ARALYDRAFT_470402 [Arabidopsis lyrata subsp. lyrata] gi|297338045|gb|EFH68462.1| hypothetical protein ARALYDRAFT_470402 [Arabidopsis lyrata subsp. lyrata]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/175 (50%), Positives = 124/175 (70%), Gaps = 3/175 (1%)

Query: 12  LSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALF 71
           ++ +K T QSI    RPW DFLDLSAF++P S++DATTR+TQNLTHFR NY++I  + L 
Sbjct: 6   ITGIKETAQSITGAARPWGDFLDLSAFSVPSSVADATTRVTQNLTHFRINYSIILSILLG 65

Query: 72  LSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHV 131
           L+LI  P++I+ F+   +AWFFLYFAR++PLT+ GF +DD +V   L  +++  LV T V
Sbjct: 66  LTLITRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGV 125

Query: 132 WVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGGDSARGSYTGL 186
           W+  L +V  G +++ILHA  R TDDLV +D ESP+G +L     D ARG Y+G+
Sbjct: 126 WLRALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLST---DGARGDYSGI 177

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432912|ref|XP_002284210.1| PREDICTED: PRA1 family protein D-like [Vitis vinifera]

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/184 (54%), Positives = 133/184 (72%), Gaps = 4/184 (2%)

Query: 1   MSFTAASDTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRS 60
           MS  + S  GFLS  +  TQS+ A  RPW + LDLSA +LP SL +AT RI ++L +FR 
Sbjct: 10  MSPPSTSAAGFLSTAREKTQSVMAGCRPWGELLDLSALSLPFSLGEATARIKRSLAYFRV 69

Query: 61  NYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFA 120
           NY +I LL LF+SL++HP+S+IVFL+  VAW FLYF RDDP+ +    VDDRVV+  + A
Sbjct: 70  NYTLIVLLVLFVSLLWHPISMIVFLVVFVAWLFLYFLRDDPVLIFNRIVDDRVVLVGVAA 129

Query: 121 VTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGGDSAR 180
           VT+  LVLTHVW+NV VS+V+G+ LV LH  FR++D+L  +DQESP+G LL  +  DS R
Sbjct: 130 VTIVALVLTHVWLNVFVSLVIGSFLVCLHGAFRASDNL--DDQESPYGALLTVV--DSPR 185

Query: 181 GSYT 184
           GSY+
Sbjct: 186 GSYS 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085589|ref|XP_002307629.1| predicted protein [Populus trichocarpa] gi|222857078|gb|EEE94625.1| predicted protein [Populus trichocarpa]

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 126/186 (67%), Gaps = 11/186 (5%)

Query: 4   TAASDTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYA 63
           +AA+ + FL+R   TT +  ATRRPW + ++ S+F  PLS  +AT R+ +NL +FR NY 
Sbjct: 20  SAAAPSTFLTRSANTTTNFFATRRPWRELIEFSSFTRPLSFGEATIRVKRNLYYFRVNYT 79

Query: 64  VITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTV 123
           +I L+ LFLSL++HP+S+IVFL+  VAWFFLYF RD PL +    +DDRVV+G L  VT+
Sbjct: 80  MIILVILFLSLLWHPLSMIVFLVVFVAWFFLYFFRDQPLVIFHRPIDDRVVLGLLSIVTI 139

Query: 124 TGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLG-----GDS 178
             L+ THVW+NVLVSV++GA +V+LHA FR T++L +++ +      L D G     G  
Sbjct: 140 IALIFTHVWLNVLVSVLIGAAVVVLHAAFRGTENLYLDEHD------LADEGLFSVVGSP 193

Query: 179 ARGSYT 184
            R  YT
Sbjct: 194 MRDGYT 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432624|ref|XP_004134099.1| PREDICTED: PRA1 family protein D-like isoform 1 [Cucumis sativus] gi|449504109|ref|XP_004162255.1| PREDICTED: PRA1 family protein D-like isoform 1 [Cucumis sativus]

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 99/171 (57%), Positives = 123/171 (71%), Gaps = 5/171 (2%)

Query: 16  KRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLI 75
           K   +S+ ATRRPW +FLD SA +LP SLSDATTRI+ NLT F SNY ++ LL +FL LI
Sbjct: 11  KEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLVVLLLIFLGLI 70

Query: 76  YHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNV 135
           YHP S+IVFLL  VAWFFLYF+RDDP+ V GF++DD V+I  L   T   L LT V+VNV
Sbjct: 71  YHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLATGLALALTGVFVNV 130

Query: 136 LVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGGDSARGSYTGL 186
           L+S+ +GAV+V LHA  RST+DLV  D + PFG    D   +S RG Y+G+
Sbjct: 131 LISLAIGAVVVCLHAALRSTEDLV-GDMQDPFG----DALLESPRGDYSGI 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787959|emb|CAN73850.1| hypothetical protein VITISV_021777 [Vitis vinifera]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/170 (50%), Positives = 117/170 (68%)

Query: 11  FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLAL 70
           F+SR  + TQ++ ATRRPW +FLD SA + P + SDA  RI +N+ +FR NYA++ L  L
Sbjct: 30  FISRATQRTQTLMATRRPWREFLDYSALSRPHNYSDAMARIKRNVNYFRVNYAMVMLFIL 89

Query: 71  FLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTH 130
           F+SL++HP S+IVFL+  VAWFFLYF RD+P+ +    +DDRVV+  L  +TV  LV T 
Sbjct: 90  FVSLLWHPTSMIVFLIIFVAWFFLYFFRDNPVVLFHQTIDDRVVLVLLGLITVVALVFTD 149

Query: 131 VWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGGDSAR 180
           V +NVLVS+++G  +V LHA FR T+DL + ++E   G LL   GG   R
Sbjct: 150 VGLNVLVSLIIGVAVVGLHAAFRGTEDLFLNEEEVAEGGLLSVAGGQQLR 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453012|ref|XP_002264376.1| PREDICTED: PRA1 family protein E [Vitis vinifera]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 116/170 (68%)

Query: 11  FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLAL 70
           F+SR  + TQ++ ATRRPW +FLD S  + P + SDA  RI +N+ +FR NYA++ L  L
Sbjct: 30  FISRATQRTQTLMATRRPWREFLDYSVLSRPHNYSDAMARIKRNVNYFRVNYAMVMLFIL 89

Query: 71  FLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTH 130
           F+SL++HP S+IVFL+  VAWFFLYF RD+P+ +    +DDRVV+  L  +TV  LV T 
Sbjct: 90  FVSLLWHPTSMIVFLIIFVAWFFLYFFRDNPVVLFHQTIDDRVVLVLLGLITVVALVFTD 149

Query: 131 VWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGGDSAR 180
           V +NVLVS+++G  +V LHA FR T+DL + ++E   G LL   GG   R
Sbjct: 150 VGLNVLVSLIIGVAVVGLHAAFRGTEDLFLNEEEVAEGGLLSVAGGQQLR 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062230|ref|XP_002300800.1| predicted protein [Populus trichocarpa] gi|222842526|gb|EEE80073.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 120/171 (70%)

Query: 11  FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLAL 70
           FL+R   TT +I ATRRPW + ++ S+F  P SL D T RI +NL++FR NY +I L  L
Sbjct: 21  FLTRATNTTSTIFATRRPWRELIEFSSFARPGSLGDTTIRIKRNLSYFRVNYTMIILSIL 80

Query: 71  FLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTH 130
           FLSL++HP+S+IVFL+  VAWFFLYF RD PL +    +DDRVV+G L   T+  L+ TH
Sbjct: 81  FLSLLWHPLSMIVFLIVFVAWFFLYFFRDQPLVIFHRTIDDRVVLGLLGVATIVALIFTH 140

Query: 131 VWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPFGVLLDDLGGDSARG 181
           VW+NVLVS+++GA +V+LHA FR TDD+  +DQ+   G LL  +G  +  G
Sbjct: 141 VWLNVLVSLLIGAAIVVLHAAFRRTDDMYSDDQDVADGSLLSFVGSPTRAG 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2018359	182	MPI7 "CAMV movement protein in	0.930	0.961	0.457	1.4e-39
TAIR|locus:2025615	209	PRA1.E "AT1G08770" [Arabidopsi	0.930	0.837	0.376	1.2e-28
TAIR|locus:2035701	189	PRA7 [Arabidopsis thaliana (ta	0.840	0.835	0.398	6.4e-28
TAIR|locus:2091556	188	PRA8 "AT3G13720" [Arabidopsis	0.829	0.829	0.384	1.2e-26
TAIR|locus:2007948	180	PRA1.F1 "AT1G17700" [Arabidops	0.824	0.861	0.365	1.8e-25
TAIR|locus:2091541	188	PRA1.F4 "AT3G13710" [Arabidops	0.808	0.808	0.394	2.2e-25
TAIR|locus:2153589	217	PRA1.B3 "AT5G05380" [Arabidops	0.946	0.820	0.355	1.4e-23
TAIR|locus:2063120	213	PRA1.B2 "AT2G40380" [Arabidops	0.898	0.793	0.339	1.9e-21
TAIR|locus:2169364	216	PRA1.B6 "AT5G07110" [Arabidops	0.819	0.712	0.339	4.9e-21
TAIR|locus:2078371	209	PRA1.B1 "AT3G56110" [Arabidops	0.930	0.837	0.340	1.3e-20

TAIR|locus:2018359 MPI7 "CAMV movement protein interacting protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 81/177 (45%), Positives = 110/177 (62%)

Query:    12 LSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALF 71
             ++ +K T QSI    RPW DFLDLSAF+ P S++DATTR+TQNLTHFR NY++I  + L 
Sbjct:     6 ITGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLG 65

Query:    72 LSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGXXXXXX 131
             L+LI  P++I+ F+   +AWFFLYFAR++PLT+ GF +DD +V   L  +++        
Sbjct:    66 LTLITRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGV 125

Query:   132 XXXXXXXXXXXXXXXXXHAWFRSTDDLVMEDQESPFGVLLDDLGG--DSARGSYTGL 186
                              HA  R TDDLV +D ESP+G +L   GG  D ARG Y+G+
Sbjct:   126 WLRALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSGGGNDGARGDYSGI 182

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046739 "spread of virus in multicellular host" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2025615 PRA1.E "AT1G08770" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 67/178 (37%), Positives = 98/178 (55%)

Query:    10 GFLS-RVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLL 68
             G LS R K+TTQS+  T RPW + LDLSA +LP    +A   +  N+++FR NYA+  L 
Sbjct:    30 GTLSARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLA 89

Query:    69 ALFLSLIYHPVSIIVFLLTLVAWFFLYFARD--DPLTVLGFQVDDRVVIGALFAVTVTGX 126
              +FL LIYHP+S+I F++  + W  LYF+RD  D + + G +VDD++V+  L  VTV   
Sbjct:    90 IVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLAL 149

Query:   127 XXXXXXXXXXXXXXXXXXXXXXHAWFRSTDDLVMEDQESPFGVLLDDLGGDSARGSYT 184
                                   H  FR+TDDL ++++ +  G L+    G+    SYT
Sbjct:   150 VYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSAGSGNRPPSSYT 207

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2035701 PRA7 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 63/158 (39%), Positives = 86/158 (54%)

Query:     6 ASDTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVI 65
             A D  ++SR K   +S  ATRRPW    D  +  LP    DA +RI  NL +FR+NYA+ 
Sbjct:    16 AIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIG 75

Query:    66 TLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTG 125
              L  LFLSL+YHP S+IV  + +V W FLYF RD+PL V G+Q+DDR V+  L  +TV  
Sbjct:    76 VLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVLIGLSVLTVVM 135

Query:   126 XXXXXXXXXXXXXXXXXXXXXXXHAWFRSTDDLVMEDQ 163
                                    HA  R +D+L ++++
Sbjct:   136 LLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEE 173

GO:0009507 "chloroplast" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2091556 PRA8 "AT3G13720" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 60/156 (38%), Positives = 85/156 (54%)

Query:     8 DTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITL 67
             D   LSR K   ++  ATRR W    D  +  LP  +SDA TRI  NL +FR NYA++ L
Sbjct:    18 DVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVL 77

Query:    68 LALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGXX 127
             + +F SLI+HP S+IVF + +V W FLYF RD+P+ +  FQ+DDR V+  L  +TV    
Sbjct:    78 IVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLTVVLLL 137

Query:   128 XXXXXXXXXXXXXXXXXXXXXHAWFRSTDDLVMEDQ 163
                                  H+  R T+DL ++++
Sbjct:   138 LTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEE 173

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2007948 PRA1.F1 "AT1G17700" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 57/156 (36%), Positives = 88/156 (56%)

Query:    11 FLSR-VKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLA 69
             +++R + +  +S  ATRRPW   LDL +FN P  L+   TRI  N  +F++NY ++ L +
Sbjct:    20 YITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFS 79

Query:    70 LFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGXXXX 129
             +FLSLI++P S++V L  L AW FLYF RD+PLTV   ++D R+V+  +  +T++     
Sbjct:    80 VFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDREIDHRIVLIIMSVITLSILFLT 139

Query:   130 XXXXXXXXXXXXXXXXXXXHAWFRSTDDLVMEDQES 165
                                HA  R T+DL   D+E+
Sbjct:   140 DAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEET 175

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

TAIR|locus:2091541 PRA1.F4 "AT3G13710" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 60/152 (39%), Positives = 81/152 (53%)

Query:    12 LSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALF 71
             +SR K+  +   ATRR W    DL +  LP  +SD  +RI  NL +FRSNYA++ L  +F
Sbjct:    22 ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIF 81

Query:    72 LSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGXXXXXX 131
              SLI+HP S+IVF   +  W FLYF RD PL V  FQ+DDR V+  L  +T+        
Sbjct:    82 FSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNA 141

Query:   132 XXXXXXXXXXXXXXXXXHAWFRSTDDLVMEDQ 163
                              HA  R TDDL ++++
Sbjct:   142 TFNIVAALMAGAVLVLIHAVIRKTDDLFLDEE 173

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

TAIR|locus:2153589 PRA1.B3 "AT5G05380" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 64/180 (35%), Positives = 87/180 (48%)

Query:    11 FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLAL 70
             FLSR+  + +   + RRPW + +D SA + P SL+DA +RI +NL +F+ NY  I  L L
Sbjct:    32 FLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVL 91

Query:    71 FLSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTVTGXXX 128
              LSL+ HP S++V L    AW FLY  R  D PL VLG    DR  +G L  +T+     
Sbjct:    92 ALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFL 151

Query:   129 XXXXXXXXXXXXXXXXXXXXHAWFRSTDDLVMEDQESPFGVLLDDLGGDSARGSYTGLQT 188
                                 H  FR  +DL ++DQE     LL  L G +   +     T
Sbjct:   152 TSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPANTGLLSFLSGAATSAAVAAAST 211

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

TAIR|locus:2063120 PRA1.B2 "AT2G40380" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 58/171 (33%), Positives = 84/171 (49%)

Query:    11 FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLAL 70
             FLSR+  + +   + RRPW + +D S+F  P SL+D+ +RI +NL +F+ NY+ I  L L
Sbjct:    31 FLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVL 90

Query:    71 FLSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTVTGXXX 128
               SL+ HP S++V L  L +W FLY  R  D PL + G    DR  +  L   T+     
Sbjct:    91 AFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFM 150

Query:   129 XXXXXXXXXXXXXXXXXXXXHAWFRSTDDLVMEDQESPFGVLLDDLGGDSA 179
                                 H  FR  DDL +++QE     LL  +G  +A
Sbjct:   151 TSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPANAGLLSFIGNSAA 201

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2169364 PRA1.B6 "AT5G07110" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 53/156 (33%), Positives = 80/156 (51%)

Query:    12 LSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALF 71
             LSRV  T +  +A  RPW++ +D SAF+ P SLS+AT+R+ +N ++FR+NY  +  + L 
Sbjct:    30 LSRVLATVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLA 89

Query:    72 LSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTVTGXXXX 129
              SL+ HP ++ +      +W FLYF R  D PL + G    D   +G L   TV      
Sbjct:    90 ASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMT 149

Query:   130 XXXXXXXXXXXXXXXXXXXHAWFRSTDDLVMEDQES 165
                                H  FR+ +DL +E+QE+
Sbjct:   150 SVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEA 185

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2078371 PRA1.B1 "AT3G56110" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 61/179 (34%), Positives = 85/179 (47%)

Query:    11 FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLAL 70
             F SR+  + +   + RRPW++ +D S+   P SL+DA +RI +NL +F+ NY  I  L L
Sbjct:    29 FFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVL 88

Query:    71 FLSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTVTGXXX 128
               SL  HP+S++V +  L  W FLY  R  D PL V G    DR  + AL   T+     
Sbjct:    89 AFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFM 148

Query:   129 XXXXXXXXXXXXXXXXXXXXHAWFRSTDDLVMEDQESPFGVLLDDLGGD--SARGSYTG 185
                                 H  F   DDL +++QE     LL  LGG   SA  + +G
Sbjct:   149 TSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPANAGLLSFLGGSATSAAAAVSG 207

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93829	PRA1D_ARATH	No assigned EC number	0.5141	0.9308	0.9615	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	MPI7	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7); protein binding; Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors. ; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments (By similarity) (182 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G66000	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (215 aa)							•		0.873
	AT5G65370	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; [...] (295 aa)							•		0.873
	AT5G60370	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (413 aa)							•		0.873
	AT5G66070	zinc finger (C3HC4-type RING finger) family protein; zinc finger (C3HC4-type RING finger) famil [...] (245 aa)							•		0.790
	UPM1	UPM1 (UROPHORPHYRIN METHYLASE 1); uroporphyrin-III C-methyltransferase; Encodes a urophorphyrin [...] (369 aa)							•		0.563
	ATCNGC4	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4); calmodulin binding / cation channel/ cation [...] (694 aa)							•		0.436
	AT4G03760	transposable element gene; pseudogene of unknown protein (802 aa)							•		0.436
	ATCLC-A	ATCLC-A (CHLORIDE CHANNEL A); anion channel/ nitrate transmembrane transporter/ voltage-gated c [...] (775 aa)							•		0.419
	AT4G20860	FAD-binding domain-containing protein; FAD-binding domain-containing protein; FUNCTIONS IN- ele [...] (530 aa)							•		0.409
	AKRP	AKRP (ANKYRIN REPEAT PROTEIN); protein binding; ANKYRIN REPEAT PROTEIN (AKRP); FUNCTIONS IN- pr [...] (435 aa)							•		0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
pfam03208	153	pfam03208, PRA1, PRA1 family protein	1e-42
COG5130	169	COG5130, YIP3, Prenylated rab acceptor 1 and relat	6e-06

>gnl|CDD|190565 pfam03208, PRA1, PRA1 family protein

 Score =  139 bits (353), Expect = 1e-42
 Identities = 61/142 (42%), Positives = 90/142 (63%), Gaps = 1/142 (0%)

Query: 24  ATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIV 83
           A  RPWS+F D S F+ P S S+AT+R+ +NL +F++NYA++ L  L LSL+ +P+S+IV
Sbjct: 7   APLRPWSEFFDRSRFSRPRSFSEATSRVRRNLLYFQTNYAIVVLAVLLLSLLTNPLSLIV 66

Query: 84  FLLTLVAWFFLYFARDD-PLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVG 142
            L+ + AW FLYF R + PL + G    DR V+  L  V+V  L LT     +L  +  G
Sbjct: 67  LLVLVAAWLFLYFLRPNEPLVLFGRTFSDRQVLIGLLVVSVPLLFLTSAGSVLLWLLGAG 126

Query: 143 AVLVILHAWFRSTDDLVMEDQE 164
            +LV+ HA FR  +DL +++ E
Sbjct: 127 LLLVLAHAAFRLRNDLFLDENE 148

This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18. Length = 153

>gnl|CDD|227459 COG5130, YIP3, Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 3/143 (2%)

Query: 11  FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLAL 70
           F    +   Q++        +F ++   ++P + ++A +R+  NL  F SNY  I  +  
Sbjct: 15  FSEIYRSIKQALGDKDVT-REFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILT 73

Query: 71  FLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFA-VTVTGLVLT 129
              L+Y+ + +IV  + +   + +   R  PL V   +++ R V+ A    V +      
Sbjct: 74  IYYLLYNLLLLIVIGIVVAGVYGIRKLRGRPL-VCNIELEPRSVLYAGLVCVLIPFGFFA 132

Query: 130 HVWVNVLVSVVVGAVLVILHAWF 152
              V +L       V+V  HA  
Sbjct: 133 SPIVTLLWLSGASGVVVFGHAAL 155

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	100.0
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	100.0
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	99.91
KOG4050	188	consensus Glutamate transporter EAAC1-interacting	99.9

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-49  Score=319.10  Aligned_cols=169  Identities=49%  Similarity=0.740  Sum_probs=164.4

Q ss_pred             CchhhHHhHHHhhhhccCCCCChhhhhCcCCCCCCCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 029745            7 SDTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLL   86 (188)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~~~RPw~eF~~~~~fs~P~s~~~~~~Ri~~Nl~yF~~NY~li~~~~~~~~ll~~P~~Li~l~~   86 (188)
                      +-+++.+|.+|+.+..+++.|||+||+|.++|++|+|++|+.+|+++|+.|||.||++++.++..+++++||++|+++++
T Consensus        18 ~~~~~~~~~~~~~~~~lst~RpW~ef~d~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~   97 (187)
T KOG3142|consen   18 SVESISSRAKQTIQSGLSTRRPWSEFFDRSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITHPLSLIVLLA   97 (187)
T ss_pred             chhhHHHHHHHHHHHHHhccCCHHHHHcccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            45778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCeeecceechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccCCCCC
Q 029745           87 TLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESP  166 (188)
Q Consensus        87 ~~~~~~~i~~~~~~pl~i~g~~~~~~~~~~~l~~vt~~ll~~~~~~~~l~~~l~~s~~vvl~HA~~R~~~~l~~~e~e~~  166 (188)
                      .+++|+++|+.||+|++++||++++++++++++++|++++|+++++.+++|++++|+++|+.||+||++||+|+||||+.
T Consensus        98 lv~~w~~LY~~rd~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~Haafr~~ddLF~dee~~~  177 (187)
T KOG3142|consen   98 LVAAWLFLYFLRDEPLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLIHAAFRNTDDLFLDEEEAA  177 (187)
T ss_pred             HHHHHHheeeecCCCeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhHHHHhChHhhhhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccceecC
Q 029745          167 FGVLLDDLG  175 (188)
Q Consensus       167 ~~~~~~~~~  175 (188)
                      .+|++++.+
T Consensus       178 ~~gl~s~~~  186 (187)
T KOG3142|consen  178 ASGLLSFSS  186 (187)
T ss_pred             cccccccCC
Confidence            899998754

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=100.00  E-value=3.8e-38  Score=247.99  Aligned_cols=148  Identities=36%  Similarity=0.596  Sum_probs=141.0

Q ss_pred             hhccCCCCChhhhhCcCCCCCCCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccC
Q 029745           20 QSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARD   99 (188)
Q Consensus        20 ~~~l~~~RPw~eF~~~~~fs~P~s~~~~~~Ri~~Nl~yF~~NY~li~~~~~~~~ll~~P~~Li~l~~~~~~~~~i~~~~~   99 (188)
                      +.+++++|||+||+|.++|+.|+|.+|+.+|+++|+.|||+||++++++++++++++||..++++++++++|.+++..++
T Consensus         2 ~~~~~~~Rpw~eF~~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~   81 (153)
T PF03208_consen    2 QSRLSPLRPWREFFDTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRK   81 (153)
T ss_pred             ccccCCCCCHHHHhCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             --CCeeecceechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccCCCCCC
Q 029745          100 --DPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQESPF  167 (188)
Q Consensus       100 --~pl~i~g~~~~~~~~~~~l~~vt~~ll~~~~~~~~l~~~l~~s~~vvl~HA~~R~~~~l~~~e~e~~~  167 (188)
                        +|+.+.|+++++++++.++.+++++++++++++.+++|+++++++++++||+||+||++..+|+|.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~~~~~e~~~~~  151 (153)
T PF03208_consen   82 ENDPIVIGGRKISPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDLKNKEENEIES  151 (153)
T ss_pred             cCcchhccCcccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhHHhc
Confidence              78999999999999999999999999999999999999999999999999999999998888888764

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=99.91  E-value=7.2e-24  Score=164.05  Aligned_cols=146  Identities=19%  Similarity=0.225  Sum_probs=132.0

Q ss_pred             hhhhccCCCCChhhhhCcCCCCCCCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Q 029745           18 TTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFA   97 (188)
Q Consensus        18 ~~~~~l~~~RPw~eF~~~~~fs~P~s~~~~~~Ri~~Nl~yF~~NY~li~~~~~~~~ll~~P~~Li~l~~~~~~~~~i~~~   97 (188)
                      +....+.+.+.-+||||..|.|+|+|++|+.+|+-.|+.||..||..++..+..|.+++||.+++++.+.+++.+-+.+.
T Consensus        21 s~~q~L~~~~~~~eFfni~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~kl  100 (169)
T COG5130          21 SIKQALGDKDVTREFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRKL  100 (169)
T ss_pred             HHHHHhcCcccHHHHhccccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehhhc
Confidence            44556778899999999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             cCCCeeecceechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccCCC
Q 029745           98 RDDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTDDLVMEDQE  164 (188)
Q Consensus        98 ~~~pl~i~g~~~~~~~~~~~l~~vt~~ll~~~~~~~~l~~~l~~s~~vvl~HA~~R~~~~l~~~e~e  164 (188)
                      |++|++..-+..+..+++.+++++.+++.++.++..+++|..++|.++++.||++..++-. .|+||
T Consensus       101 ~g~~lv~~~~~~~~~~ly~glvcvlip~gffaspI~tllwl~gas~v~vfgHAal~e~p~e-~~fee  166 (169)
T COG5130         101 RGRPLVCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAALLEEPLE-KDFEE  166 (169)
T ss_pred             ccCccccccceeecchhhhhHHHHHHHHHHHHhHHHHHHHHHhcceeEeechHHHcCCccc-cchhh
Confidence            9889887777777889999999999999999999999999999999999999999986432 44443

>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.90  E-value=3.6e-23  Score=163.11  Aligned_cols=137  Identities=20%  Similarity=0.266  Sum_probs=115.6

Q ss_pred             hhhccCCCCChhhhh-CcCCCCCC--CChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--H
Q 029745           19 TQSINATRRPWSDFL-DLSAFNLP--LSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWF--F   93 (188)
Q Consensus        19 ~~~~l~~~RPw~eF~-~~~~fs~P--~s~~~~~~Ri~~Nl~yF~~NY~li~~~~~~~~ll~~P~~Li~l~~~~~~~~--~   93 (188)
                      -+-+++|+|.|+||+ +++||..|  +|+++|.+|+.+|+.|||+||++.++..+++..+.+|..+++.++..++..  .
T Consensus        12 ~~v~lpPlRa~ddF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~l   91 (188)
T KOG4050|consen   12 NGVELPPLRALDDFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTL   91 (188)
T ss_pred             cCCCCCcchhHHHhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            456799999999999 99999999  899999999999999999999999999999999999999888776543222  3


Q ss_pred             HHhcc-CCCeeecceechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 029745           94 LYFAR-DDPLTVLGFQVDDRVVIGALFAVTVTGLVLTHVWVNVLVSVVVGAVLVILHAWFRSTD  156 (188)
Q Consensus        94 i~~~~-~~pl~i~g~~~~~~~~~~~l~~vt~~ll~~~~~~~~l~~~l~~s~~vvl~HA~~R~~~  156 (188)
                      ++... ++.++...+++ |...+++...++.+++++.++..++.+++..+++++++||++|.++
T Consensus        92 iwa~~~~a~~krmr~~h-p~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRn  154 (188)
T KOG4050|consen   92 IWAASADANIKRMRTDH-PLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRN  154 (188)
T ss_pred             HHHHhccHHHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33222 33455455555 4578888889999999999999999999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00