Citrus Sinensis ID: 029751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLSVLCRHACF
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHcccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEccccccccccHHHHHHHcccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEccccccccHHHHccccccEEEcccHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEccccccccHHHHHccccccEEccHHHHHHHHHHHHHHHHHHHcccccHHHcEEEEEEEEEEEEEccEEEEHHHEEEEccEEEEEEEEEEEcccccccccHHHHHHHccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvkyskepdnptksckargsdlrVHFKNTREAAHALRKLSLTKAKRYLEDVMAHkqaipftrfcrgvgrtaqaknrnpngqgrwpvkSAKFILDLLKNaesnaevkgldvdALYISHIQVNQAQKQRRRTYrahgrinpymsspchieltlsekeepvkkEVGSLVkvrsvnyrkyDLLSVLCRHACF
Flexible Loop (DISEMBL)
mvkyskepdnptksckargsdlrvHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTaqaknrnpngqgrwpvKSAKFILDLLKNAESNAEVKGLDVDALYISHIQvnqaqkqrRRTYRAhgrinpymsspCHIELTlsekeepvkkevgslvkvrsvnyrkydllsvlcrhacf
Low Complexity Region (SEG)
MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLSVLCRHACF
Disordered region (IsUnstruct)
*******************************AAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRT************RWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQ****RTYRAHGRINPYMSSPCHIELTL*********EVGSLVKVRSVNYRKYDLLSVLCRHAC*
Disordered Region (DISOPRED)
*VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE****************************LCRHACF
Disordered Region (DISEMBL)
***************KARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV***********RAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLSVLCRHACF
Disordered Region (DISPRO)
****************ARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLSVLCRHACF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLSVLCRHACF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
P51413	175	60S ribosomal protein L17	yes	no	0.904	0.971	0.858	5e-84
Q93VI3	176	60S ribosomal protein L17	yes	no	0.904	0.965	0.852	2e-83
P35266	170	60S ribosomal protein L17	N/A	no	0.882	0.976	0.855	5e-81
O48557	171	60S ribosomal protein L17	N/A	no	0.898	0.988	0.846	7e-81
P35267	172	60S ribosomal protein L17	N/A	no	0.898	0.982	0.828	8e-80
P37380	183	60S ribosomal protein L17	N/A	no	0.835	0.857	0.721	4e-61
P18621	184	60S ribosomal protein L17	no	no	0.845	0.864	0.675	9e-59
Q5XTY7	184	60S ribosomal protein L17	N/A	no	0.845	0.864	0.675	9e-59
Q4KTG9	191	60S ribosomal protein L17	N/A	no	0.851	0.837	0.677	1e-58
P24049	184	60S ribosomal protein L17	yes	no	0.845	0.864	0.675	1e-58

>sp|P51413|RL172_ARATH 60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2

 Score =  309 bits (792), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 146/170 (85%), Positives = 157/170 (92%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRS 170
           NQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE  + +  +S
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKS 170

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VI3|RL171_ARATH 60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1

 Score =  308 bits (788), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 145/170 (85%), Positives = 157/170 (92%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRS 170
           NQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE  + +  +S
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKS 170

Arabidopsis thaliana (taxid: 3702)

>sp|P35266|RL171_HORVU 60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1

 Score =  300 bits (767), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 142/166 (85%), Positives = 149/166 (89%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS +P NPTKS KA G DLRVHFKNTRE A ALRK+ L KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+CRGVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLV 166
           NQAQKQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE  S +
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHI 166

Hordeum vulgare (taxid: 4513)

>sp|O48557|RL17_MAIZE 60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1

 Score =  299 bits (765), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 143/169 (84%), Positives = 153/169 (90%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EP NPTKS KA G DLRVHFKNTRE A ALRKL LTKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+C GVGRTAQAK+R+ NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVR 169
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE  ++V  R
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAAR 169

Zea mays (taxid: 4577)

>sp|P35267|RL172_HORVU 60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1

 Score =  296 bits (757), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 151/169 (89%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS++P NPTKS KA G DLRVHFKNTRE A ALR++ L KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+CRGVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVR 169
           NQAQKQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE  ++V  R
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPR 169

Hordeum vulgare (taxid: 4513)

>sp|P37380|RL17_PODCA 60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1

 Score =  233 bits (595), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/158 (72%), Positives = 131/158 (82%), Gaps = 1/158 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           M KYS +P+NP KSCKARGS LRVHFKNTRE A A++K+ + KA RYL+DV+A KQ IPF
Sbjct: 1   MGKYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFC GVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQV
Sbjct: 61  RRFCGGVGRKAQAKAFK-HTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPV 158
           N+A   RRRTYRAHGRINPYMSSPCHIE+ +SEKE+ V
Sbjct: 120 NRAPYMRRRTYRAHGRINPYMSSPCHIEMIVSEKEQVV 157

Podocoryne carnea (taxid: 6096)

>sp|P18621|RL17_HUMAN 60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3

 Score =  226 bits (575), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 108/160 (67%), Positives = 130/160 (81%), Gaps = 1/160 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct: 61  RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160
           N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K
Sbjct: 120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159

Homo sapiens (taxid: 9606)

>sp|Q5XTY7|RL17_FELCA 60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3

 Score =  226 bits (575), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 108/160 (67%), Positives = 130/160 (81%), Gaps = 1/160 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct: 61  RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160
           N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K
Sbjct: 120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159

Felis catus (taxid: 9685)

>sp|Q4KTG9|RL17_SUBDO 60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1

 Score =  225 bits (574), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/161 (67%), Positives = 126/161 (78%), Gaps = 1/161 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           M +Y+ EP+NP KSCKARG DLRVHFKNTRE A A++ + L KA RYL DV+  KQ IPF
Sbjct: 1   MGRYAIEPENPAKSCKARGEDLRVHFKNTRETAQAIKGMHLKKALRYLNDVIEKKQIIPF 60

Query: 61  TRFCRGVGRTAQAKN-RNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQ 119
            RF  GVGR AQAKN + P  QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQ
Sbjct: 61  RRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQ 120

Query: 120 VNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160
           VN+A   RRRTYRAHGRINPYM+SPCHIE+ L EK+E V K
Sbjct: 121 VNRAAHLRRRTYRAHGRINPYMTSPCHIEMFLVEKDEAVPK 161

Suberites domuncula (taxid: 55567)

>sp|P24049|RL17_RAT 60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3

 Score =  225 bits (573), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/160 (67%), Positives = 130/160 (81%), Gaps = 1/160 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct: 61  RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160
           N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K
Sbjct: 120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
330318574	186	ribosomal petrp-like protein [Camellia s	0.856	0.865	0.937	3e-85
147838177	183	hypothetical protein VITISV_011749 [Viti	0.856	0.879	0.919	2e-84
225425462	185	PREDICTED: 60S ribosomal protein L17-2-l	0.856	0.870	0.919	2e-84
388506208	173	unknown [Lotus japonicus] gi|388522765|g	0.856	0.930	0.931	3e-84
225456299	183	PREDICTED: 60S ribosomal protein L17-2-l	0.856	0.879	0.913	3e-84
297734406	209	unnamed protein product [Vitis vinifera]	0.856	0.770	0.913	3e-84
356525150	181	PREDICTED: 60S ribosomal protein L17-2-l	0.856	0.889	0.925	5e-84
351723205	181	uncharacterized protein LOC100499784 [Gl	0.856	0.889	0.925	5e-84
351722753	181	uncharacterized protein LOC100306009 [Gl	0.856	0.889	0.919	1e-83
118482762	178	unknown [Populus trichocarpa] gi|1184830	0.856	0.904	0.931	1e-83

>gi|330318574|gb|AEC10957.1| ribosomal petrp-like protein [Camellia sinensis]

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 151/161 (93%), Positives = 154/161 (95%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYSKEPDNPTKSCKARGSDLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFCRGVGRTAQAKNR+ NGQGRWPVKSA FILDLLKNAESNAEVKGLDVD LYISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPVKSAGFILDLLKNAESNAEVKGLDVDTLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 161

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838177|emb|CAN74145.1| hypothetical protein VITISV_011749 [Vitis vinifera]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/161 (91%), Positives = 155/161 (96%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARGSDLRVHFKNTRE AHA+RKL L KAKRYLEDV+ HKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLVHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFCRGVGRTAQAKNR+ NGQGRWPVKSAKFILDLLKNAESNA++KGLDVD+LYISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425462|ref|XP_002279258.1| PREDICTED: 60S ribosomal protein L17-2-like [Vitis vinifera]

 Score =  316 bits (810), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/161 (91%), Positives = 155/161 (96%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARGSDLRVHFKNTRE AHA+RKL L KAKRYLEDV+ HKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLVHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
           TRFCRGVGRTAQAKNR+ NGQGRWPVKSAKFILDLLKNAESNA++KGLDVD+LYISHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506208|gb|AFK41170.1| unknown [Lotus japonicus] gi|388522765|gb|AFK49444.1| unknown [Lotus japonicus]

 Score =  316 bits (809), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 150/161 (93%), Positives = 154/161 (95%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARGSDLRVHFKNTRE AHALRKL L KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFCRGVGRTAQAKNR+ NGQGRWP KSAKFILDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct: 61  RRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALHISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 161

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456299|ref|XP_002283698.1| PREDICTED: 60S ribosomal protein L17-2-like isoform 1 [Vitis vinifera] gi|359491070|ref|XP_003634214.1| PREDICTED: 60S ribosomal protein L17-2-like isoform 2 [Vitis vinifera]

 Score =  316 bits (809), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 147/161 (91%), Positives = 156/161 (96%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARGSDLRVHFKNTRE AHA+RKL LTKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLRLTKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFCRGVGRTAQAKNR+ NGQGRWPVKSAKFILDLLKNAESNA++KGLDVD+LY+SHIQV
Sbjct: 61  QRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPV+KE
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVQKE 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734406|emb|CBI15653.3| unnamed protein product [Vitis vinifera]

 Score =  316 bits (809), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 147/161 (91%), Positives = 156/161 (96%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARGSDLRVHFKNTRE AHA+RKL LTKAKRYLEDV+AHKQAIPF
Sbjct: 27  MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLRLTKAKRYLEDVLAHKQAIPF 86

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFCRGVGRTAQAKNR+ NGQGRWPVKSAKFILDLLKNAESNA++KGLDVD+LY+SHIQV
Sbjct: 87  QRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYVSHIQV 146

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPV+KE
Sbjct: 147 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVQKE 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525150|ref|XP_003531190.1| PREDICTED: 60S ribosomal protein L17-2-like [Glycine max]

 Score =  315 bits (807), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 149/161 (92%), Positives = 154/161 (95%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARG+DLRVHFKNTRE A A+RKL L KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFCRGVGRTAQAKNR+ NGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV
Sbjct: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723205|ref|NP_001235991.1| uncharacterized protein LOC100499784 [Glycine max] gi|255626495|gb|ACU13592.1| unknown [Glycine max]

 Score =  315 bits (807), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 149/161 (92%), Positives = 154/161 (95%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARG+DLRVHFKNTRE A A+RKL L KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFCRGVGRTAQAKNR+ NGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV
Sbjct: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722753|ref|NP_001236231.1| uncharacterized protein LOC100306009 [Glycine max] gi|255627259|gb|ACU13974.1| unknown [Glycine max]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/161 (91%), Positives = 154/161 (95%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARG+DLRVHFKNTRE A A+RKL L KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFCRGVGRTAQAKNR+ NGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYI+HIQV
Sbjct: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYITHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482762|gb|ABK93299.1| unknown [Populus trichocarpa] gi|118483053|gb|ABK93436.1| unknown [Populus trichocarpa] gi|118483119|gb|ABK93468.1| unknown [Populus trichocarpa] gi|118483283|gb|ABK93544.1| unknown [Populus trichocarpa] gi|118489714|gb|ABK96658.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/161 (93%), Positives = 153/161 (95%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+EPDNPTKSCKARGSDLRVHFKNTRE A ALRKL L KAKRYLEDVMAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFALRKLPLVKAKRYLEDVMAHKQAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RFC GVGRTAQAKNR+ NGQGRWP KSAKFILDLLKNAESNAEVKGLDVDALYI+HIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYITHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161
           NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2197624	175	AT1G67430 [Arabidopsis thalian	0.904	0.971	0.858	3.1e-76
TAIR|locus:2015929	176	AT1G27400 [Arabidopsis thalian	0.904	0.965	0.852	8.1e-76
UNIPROTKB|J3QL51	228	RPL17 "60S ribosomal protein L	0.930	0.767	0.636	8.6e-56
RGD|1560017	184	RGD1560017 "similar to Ac2-210	0.973	0.994	0.603	8.6e-56
ZFIN|ZDB-GENE-030131-8585	184	rpl17 "ribosomal protein L17"	0.952	0.972	0.617	8.6e-56
UNIPROTKB|E2R3D3	184	LOC474501 "Uncharacterized pro	0.973	0.994	0.597	1.1e-55
UNIPROTKB|P18621	184	RPL17 "60S ribosomal protein L	0.973	0.994	0.597	1.1e-55
UNIPROTKB|F1NG53	187	RPL17 "Uncharacterized protein	0.973	0.978	0.597	1.4e-55
UNIPROTKB|H9L213	184	RPL17 "Uncharacterized protein	0.973	0.994	0.597	1.4e-55
UNIPROTKB|Q3T025	184	RPL17 "60S ribosomal protein L	0.973	0.994	0.597	1.4e-55

TAIR|locus:2197624 AT1G67430 [Arabidopsis thaliana (taxid:3702)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 146/170 (85%), Positives = 157/170 (92%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
             MVKYS+EPDN TKSCKARGSDLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPF
Sbjct:     1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query:    61 TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
             TRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct:    61 TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRS 170
             NQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE  + +  +S
Sbjct:   121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKS 170

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2015929 AT1G27400 [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 145/170 (85%), Positives = 157/170 (92%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
             MVKYS+EPDN TKSCKARG+DLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPF
Sbjct:     1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query:    61 TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
             TRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct:    61 TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRS 170
             NQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE  + +  +S
Sbjct:   121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKS 170

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

UNIPROTKB|J3QL51 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 114/179 (63%), Positives = 139/179 (77%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query:    61 TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK---EVGSLVKVRSVNYRKY 176
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K   EV    K+RS +  K+
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKLRSSSLGKW 178

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

RGD|1560017 RGD1560017 "similar to Ac2-210" [Rattus norvegicus (taxid:10116)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 111/184 (60%), Positives = 138/184 (75%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A+R + + KA +YL+DV   KQ +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIRGMHIRKATKYLKDVTLKKQCVPF 60

Query:    61 TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLD+D+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDLDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLS 180
             N A K RRRTYRAHGRINPYMSSPCHIE+ L EKE+ V K  G   + + ++ +K     
Sbjct:   120 NTAPKMRRRTYRAHGRINPYMSSPCHIEMILPEKEQIVPKPEGEAAQKKKISQKKLKKQK 179

Query:   181 VLCR 184
             ++ R
Sbjct:   180 LMAR 183

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

ZFIN|ZDB-GENE-030131-8585 rpl17 "ribosomal protein L17" [Danio rerio (taxid:7955)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 113/183 (61%), Positives = 140/183 (76%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV+   Q +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKANKYLKDVIVKHQCVPF 60

Query:    61 TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+  GVGR AQAK  +   QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQHDWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK---EVGSLVKVRSVNYRKYD 177
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K   EV    KV     +K  
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVSQKKKVSQKKLKKQK 179

Query:   178 LLS 180
             L++
Sbjct:   180 LMA 182

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E2R3D3 LOC474501 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 110/184 (59%), Positives = 140/184 (76%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query:    61 TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLS 180
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K    + + + ++ +K     
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQK 179

Query:   181 VLCR 184
             ++ R
Sbjct:   180 LMAR 183

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P18621 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 110/184 (59%), Positives = 140/184 (76%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query:    61 TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLS 180
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K    + + + ++ +K     
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQK 179

Query:   181 VLCR 184
             ++ R
Sbjct:   180 LMAR 183

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1NG53 RPL17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 110/184 (59%), Positives = 140/184 (76%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF
Sbjct:     4 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 63

Query:    61 TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    64 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 122

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLS 180
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K    + + + ++ +K     
Sbjct:   123 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQK 182

Query:   181 VLCR 184
             ++ R
Sbjct:   183 LMAR 186

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

UNIPROTKB|H9L213 RPL17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 110/184 (59%), Positives = 140/184 (76%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60

Query:    61 TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLS 180
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K    + + + ++ +K     
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQK 179

Query:   181 VLCR 184
             ++ R
Sbjct:   180 LMAR 183

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

UNIPROTKB|Q3T025 RPL17 "60S ribosomal protein L17" [Bos taurus (taxid:9913)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 110/184 (59%), Positives = 140/184 (76%)

Query:     1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
             MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF
Sbjct:     1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60

Query:    61 TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
              R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct:    61 RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query:   121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLS 180
             N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K    + + + ++ +K     
Sbjct:   120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQK 179

Query:   181 VLCR 184
             ++ R
Sbjct:   180 LMAR 183

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5I5J1	RL17_PECGU	No assigned EC number	0.6	0.8457	0.8688	N/A	no
Q9HE25	RL17_NEUCR	No assigned EC number	0.575	0.8457	0.8548	N/A	no
O59794	RL17B_SCHPO	No assigned EC number	0.6027	0.7712	0.7754	yes	no
Q54NG2	RL17_DICDI	No assigned EC number	0.6242	0.8297	0.8666	yes	no
Q6BM53	RL17_DEBHA	No assigned EC number	0.5812	0.8457	0.8594	yes	no
P0DJ16	RL17_TETTS	No assigned EC number	0.5632	0.8351	0.8579	N/A	no
Q93VI3	RL171_ARATH	No assigned EC number	0.8529	0.9042	0.9659	yes	no
O48557	RL17_MAIZE	No assigned EC number	0.8461	0.8989	0.9883	N/A	no
P51413	RL172_ARATH	No assigned EC number	0.8588	0.9042	0.9714	yes	no
Q5MGD1	RL17_LONON	No assigned EC number	0.6625	0.8457	0.8502	N/A	no
A0NGY0	RL17_ANOGA	No assigned EC number	0.65	0.8457	0.8502	yes	no
P24049	RL17_RAT	No assigned EC number	0.675	0.8457	0.8641	yes	no
P35267	RL172_HORVU	No assigned EC number	0.8284	0.8989	0.9825	N/A	no
Q4UF75	RL17_THEAN	No assigned EC number	0.5542	0.9255	0.9304	yes	no
Q3T025	RL17_BOVIN	No assigned EC number	0.675	0.8457	0.8641	yes	no
Q0PXV9	RL17_DIACI	No assigned EC number	0.6437	0.8457	0.8594	N/A	no
A8CAG3	RL17_PHLPP	No assigned EC number	0.6562	0.8457	0.8548	N/A	no
Q4GXH5	RL17_CARGR	No assigned EC number	0.6329	0.8351	0.8626	N/A	no
Q4GXH6	RL17_BIPLU	No assigned EC number	0.6580	0.8191	0.8508	N/A	no
Q4GXH7	RL17_AGRLI	No assigned EC number	0.6451	0.8191	0.8191	N/A	no
Q4KTG9	RL17_SUBDO	No assigned EC number	0.6770	0.8510	0.8376	N/A	no
Q09JW2	RL17_ARGMO	No assigned EC number	0.6835	0.8351	0.8486	N/A	no
A2I3Y6	RL17_MACHI	No assigned EC number	0.6187	0.8457	0.8594	N/A	no
P46990	RL17B_YEAST	No assigned EC number	0.6062	0.8457	0.8641	yes	no
Q6MY48	RL17_ASPFU	No assigned EC number	0.5723	0.8404	0.8144	yes	no
O14339	RL17A_SCHPO	No assigned EC number	0.6164	0.7712	0.7754	yes	no
Q4N4B9	RL17_THEPA	No assigned EC number	0.5485	0.9255	0.9304	yes	no
P05740	RL17A_YEAST	No assigned EC number	0.6125	0.8457	0.8641	yes	no
Q9BL19	RL17_CAEEL	No assigned EC number	0.6855	0.8404	0.8449	yes	no
Q5XTY7	RL17_FELCA	No assigned EC number	0.675	0.8457	0.8641	N/A	no
P35266	RL171_HORVU	No assigned EC number	0.8554	0.8829	0.9764	N/A	no
Q29IM3	RL17_DROPS	No assigned EC number	0.6234	0.8563	0.8655	yes	no
P37380	RL17_PODCA	No assigned EC number	0.7215	0.8351	0.8579	N/A	no
Q6XJ13	RL17_DROYA	No assigned EC number	0.6312	0.8457	0.8548	N/A	no
Q9CPR4	RL17_MOUSE	No assigned EC number	0.675	0.8457	0.8641	yes	no
Q1HR65	RL17_AEDAE	No assigned EC number	0.65	0.8457	0.8548	N/A	no
Q4PM54	RL17_IXOSC	No assigned EC number	0.6835	0.8351	0.8486	N/A	no
Q6CBS7	RL17_YARLI	No assigned EC number	0.5812	0.8457	0.8641	yes	no
Q9W3W8	RL17_DROME	No assigned EC number	0.6312	0.8457	0.8548	yes	no
Q5UAS2	RL17_BOMMO	No assigned EC number	0.6687	0.8457	0.8502	N/A	no
Q5MIR6	RL17_AEDAL	No assigned EC number	0.65	0.8457	0.8548	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017930001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (216 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)	•			•	•	•	•		0.979
	GSVIVG00025575001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)	•			•	•	•			0.957
	GSVIVG00034206001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)	•			•	•	•	•		0.944
	GSVIVG00005647001	SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (159 aa)	•			•	•	•	•		0.929
	GSVIVG00023867001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (118 aa)	•			•	•	•	•		0.922
	GSVIVG00016417001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)	•			•		•	•		0.915
	GSVIVG00018776001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (173 aa)	•			•	•	•	•		0.912
	GSVIVG00035844001	SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (173 aa)	•			•	•	•	•		0.910
	GSVIVG00037149001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (193 aa)	•			•	•	•	•		0.905
	GSVIVG00034120001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (193 aa)	•			•	•	•	•		0.903

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
PTZ00178	181	PTZ00178, PTZ00178, 60S ribosomal protein L17; Pro	2e-90
TIGR01038	150	TIGR01038, L22_arch, ribosomal protein L22(archaea	5e-67
PRK04223	153	PRK04223, rpl22p, 50S ribosomal protein L22P; Revi	3e-45
cd00336	105	cd00336, Ribosomal_L22, Ribosomal protein L22/L17e	6e-36
pfam00237	105	pfam00237, Ribosomal_L22, Ribosomal protein L22p/L	2e-31
COG0091	120	COG0091, RplV, Ribosomal protein L22 [Translation,	9e-31
PRK00565	112	PRK00565, rplV, 50S ribosomal protein L22; Reviewe	6e-10
CHL00034	117	CHL00034, rpl22, ribosomal protein L22	8e-06
PRK12279	311	PRK12279, PRK12279, 50S ribosomal protein L22/unkn	3e-05

>gnl|CDD|240306 PTZ00178, PTZ00178, 60S ribosomal protein L17; Provisional

 Score =  261 bits (670), Expect = 2e-90
 Identities = 107/169 (63%), Positives = 132/169 (78%), Gaps = 1/169 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKY+++P NP+KS KA+GSDLRVHFKNT E A A++ + L +A++YLEDV+A K+ +PF
Sbjct: 1   MVKYARKPQNPSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RF  GVGRTAQAK    + QGRWP KS KF+L LLKNAE+NAE KGLDV+ L ISH+QV
Sbjct: 61  RRFNGGVGRTAQAKEFG-HTQGRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVR 169
           N+A + RRRTYRAHGRINP+MSSPCHIEL  +EK+E V K   +  K  
Sbjct: 120 NRAPRGRRRTYRAHGRINPFMSSPCHIELIATEKDETVPKPKEAPKKQT 168

Length = 181

>gnl|CDD|211620 TIGR01038, L22_arch, ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal)

 Score =  201 bits (513), Expect = 5e-67
 Identities = 84/151 (55%), Positives = 104/151 (68%), Gaps = 1/151 (0%)

Query: 4   YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRF 63
           YS +P++PTKS KARG +LRV FKN RE A A+R + L KA++YLEDV+  K+A+PF R+
Sbjct: 1   YSYKPEDPTKSAKARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRY 60

Query: 64  CRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQA 123
              VG     K       GR+PVK+AKFIL +L+NAE+NAE KGLDV+ L I HIQ N+ 
Sbjct: 61  NGKVGHRRGLK-EWGWTAGRYPVKAAKFILKVLQNAEANAEYKGLDVEKLVIIHIQANKG 119

Query: 124 QKQRRRTYRAHGRINPYMSSPCHIELTLSEK 154
            K RR   RA GR  PY SSP HIEL + EK
Sbjct: 120 PKIRRWMPRAFGRATPYNSSPTHIELVVEEK 150

This model describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23. The corresponding bacterial homolog, described by a separate model, is designated L22 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 150

>gnl|CDD|179794 PRK04223, rpl22p, 50S ribosomal protein L22P; Reviewed

 Score =  146 bits (370), Expect = 3e-45
 Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 8/155 (5%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
            + YS + D P K+ KA G +L +  K++ E A  +R + L +AK YLEDV+A K+A+PF
Sbjct: 3   RINYSVKAD-PEKTAKAMGRELPISPKHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPF 61

Query: 61  TRFCRGVGRTAQAKNRNPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHI 118
            R  + VG       +  +G   GR+PVK+AK  L LL+NAE+NAE KGLD + L I HI
Sbjct: 62  KRHNKKVGH-----RKGIDGWPAGRYPVKAAKAFLKLLENAEANAEYKGLDTEKLVIVHI 116

Query: 119 QVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE 153
             ++ +  +    RA GR  P  +   +IE+ L E
Sbjct: 117 AAHKGRVIKGYMPRAFGRATPKNTETVNIEVILEE 151

Length = 153

>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e

 Score =  121 bits (305), Expect = 6e-36
 Identities = 52/138 (37%), Positives = 64/138 (46%), Gaps = 34/138 (24%)

Query: 15  CKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAK 74
            KA+G  LR+  K  R  A  +R +S+ +A   LE V                       
Sbjct: 1   AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFV----------------------- 37

Query: 75  NRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGL-DVDALYISHIQVNQAQKQRRRTYRA 133
                     P K+AK IL LLK+AE+NAE  GL D D LYI HIQVN+    +RR  RA
Sbjct: 38  ----------PKKAAKIILKLLKSAEANAENNGLDDPDKLYIKHIQVNKGPTLKRRRPRA 87

Query: 134 HGRINPYMSSPCHIELTL 151
            GR NP     CHI + L
Sbjct: 88  RGRANPIRKRTCHITVVL 105

L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome. Length = 105

>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e

 Score =  109 bits (275), Expect = 2e-31
 Identities = 45/138 (32%), Positives = 57/138 (41%), Gaps = 34/138 (24%)

Query: 17  ARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNR 76
           A    +R+  K  R  A  +R  S+ +A   LE V                         
Sbjct: 1   AVARYIRISPKKARLVADLIRGKSVEEALAILEFV------------------------- 35

Query: 77  NPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHG 135
                   P K+AK IL LLK+A +NAE  KGLD D LYI  I V++    +R   RA G
Sbjct: 36  --------PKKAAKIILKLLKSAVANAENNKGLDPDNLYIKEIFVDKGPTLKRFRPRARG 87

Query: 136 RINPYMSSPCHIELTLSE 153
           R  P      HI + LSE
Sbjct: 88  RATPIRKRTSHITIVLSE 105

This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Length = 105

>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

 Score =  108 bits (271), Expect = 9e-31
 Identities = 44/154 (28%), Positives = 64/154 (41%), Gaps = 35/154 (22%)

Query: 4   YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRF 63
           YS + + P    KA+   LR+  K  R  A  +R   + +A   LE V            
Sbjct: 1   YSAKVE-PEMEAKAKARYLRISPKKARLVADLIRGKKVAEALAILEFV------------ 47

Query: 64  CRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAE-VKGLDVDALYISHIQVNQ 122
                                P K+AK +  +L++A +NAE  KGLD D L +SHI V++
Sbjct: 48  ---------------------PKKAAKLVKKVLESAIANAENNKGLDPDKLVVSHIAVDK 86

Query: 123 AQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156
               +R   RA GR         HI + + EKE+
Sbjct: 87  GPVLKRFMPRARGRATRINKRTSHITVVVREKEK 120

Length = 120

>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed

 Score = 53.9 bits (131), Expect = 6e-10
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 85  PVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
           P K+A+ +  +LK+A +NAE   GLD+D L +    V++    +R   RA GR +     
Sbjct: 40  PKKAARLVKKVLKSAIANAENNHGLDIDNLVVKEAYVDEGPTLKRFRPRARGRASRIRKR 99

Query: 144 PCHIELTLSEKEE 156
             HI + ++EKEE
Sbjct: 100 TSHITVVVAEKEE 112

Length = 112

>gnl|CDD|214342 CHL00034, rpl22, ribosomal protein L22

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 85  PVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
           P ++   IL L+ +A +NA    GL+   L+IS  +V++    +R   RA GR  P    
Sbjct: 47  PYRACYPILKLVYSAAANASHNMGLNKANLFISKAEVDEGPTLKRFRPRAQGRSYPIKKP 106

Query: 144 PCHIELTLSEK 154
            CHI + L + 
Sbjct: 107 TCHITIVLKDI 117

Length = 117

>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion protein; Provisional

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 85  PVKSAKFILDLLKNAESNAEV--KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS 142
           P K A  +L LL +A SN +   K +D   LYI  I  NQ    +R   RA G  +    
Sbjct: 40  PKKFAPIVLKLLNSAISNVQHNSKDMDPSKLYIYKIVANQGPTMKRTLPRAKGSADQLFK 99

Query: 143 SPCHIELTLSEKEEPVKKEVGSL 165
              H+E+ LS+     +KE+ ++
Sbjct: 100 RTTHLEIVLSDDVNEREKELAAI 122

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
PTZ00178	181	60S ribosomal protein L17; Provisional	100.0
TIGR01038	150	L22_arch ribosomal protein L22(archaeal)/L17(eukar	100.0
PRK04223	153	rpl22p 50S ribosomal protein L22P; Reviewed	100.0
COG0091	120	RplV Ribosomal protein L22 [Translation, ribosomal	100.0
CHL00034	117	rpl22 ribosomal protein L22	100.0
PRK00565	112	rplV 50S ribosomal protein L22; Reviewed	100.0
TIGR01044	103	rplV_bact ribosomal protein L22, bacterial type. T	100.0
PF00237	105	Ribosomal_L22: Ribosomal protein L22p/L17e; InterP	100.0
cd00336	105	Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17	100.0
KOG3353	175	consensus 60S ribosomal protein L22 [Translation,	100.0
PRK12279	311	50S ribosomal protein L22/unknown domain fusion pr	100.0
KOG1711	218	consensus Mitochondrial/chloroplast ribosomal prot	99.92

>PTZ00178 60S ribosomal protein L17; Provisional

Probab=100.00  E-value=6.1e-57  Score=371.37  Aligned_cols=170  Identities=63%  Similarity=0.985  Sum_probs=165.4

Q ss_pred             CccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCC
Q 029751            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG   80 (188)
Q Consensus         1 ~~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~   80 (188)
                      ||+||++++|++++++|..+++++||+|+++||++||||++++|+++|++||++|++|||++|++|+||+++..+ ||.+
T Consensus         1 ~~~Ys~~~~n~~~~akA~~~~~riSpkk~r~Va~~IRGk~v~~A~~~L~~Vi~~k~~VPf~r~~~~vgh~~~~~~-~~~~   79 (181)
T PTZ00178          1 MVKYARKPQNPSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPFRRFNGGVGRTAQAKE-FGHT   79 (181)
T ss_pred             CCccccCCCCCCceEEEEeCCcccchHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeecCCccccccccc-cccc
Confidence            899999998899999999999999999999999999999999999999999999999999999999999999987 8999


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcccccc
Q 029751           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK  160 (188)
Q Consensus        81 ~Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v~~  160 (188)
                      +||||+|+|..|+|+|+||++||+++|+|+|+|||.||.||+|++++|++|||+||++++++++|||||+|+|.++.+++
T Consensus        80 ~GR~P~KaA~~i~KlL~SA~aNAe~~gld~d~L~I~~i~v~kG~~lKR~~pRA~GRA~~i~k~t~HI~Ivl~e~~~~~~~  159 (181)
T PTZ00178         80 QGRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQVNRAPRGRRRTYRAHGRINPFMSSPCHIELIATEKDETVPK  159 (181)
T ss_pred             cCcCcHHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCcccCCCCCccCCCcCcccCCceeEEEEEEEccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhcc
Q 029751          161 EVGSLVKVRSV  171 (188)
Q Consensus       161 ~~~~~~~~~~~  171 (188)
                      +.+.+++|.+.
T Consensus       160 ~~~~~~~~~~~  170 (181)
T PTZ00178        160 PKEAPKKQTKK  170 (181)
T ss_pred             chhhhhhhhHH
Confidence            99988887654

>TIGR01038 L22_arch ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal)

Probab=100.00  E-value=3.3e-55  Score=352.40  Aligned_cols=150  Identities=56%  Similarity=0.843  Sum_probs=147.6

Q ss_pred             ccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCC
Q 029751            4 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGR   83 (188)
Q Consensus         4 Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr   83 (188)
                      ||++++||+++++|..+++++||+|+++||++||||++++|+++|++|+++|++|||++|++|+||++++.+ |||++||
T Consensus         1 ys~~~~~~~~~akA~~~~~riS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~~~-~~~~~gR   79 (150)
T TIGR01038         1 YSYKPEDPTKSAKARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRYNGKVGHRRGLKE-WGWTAGR   79 (150)
T ss_pred             CCcCCCCCCeeEEEEeCCCcccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccc-cccccCC
Confidence            899998899999999999999999999999999999999999999999999999999999999999999998 8999999


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeC
Q 029751           84 WPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK  154 (188)
Q Consensus        84 ~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~  154 (188)
                      ||+|+|+.|+|+|+||++||+++|+|+|+|||+|++||+|+++||++|||+||++++++++|||||+|+|+
T Consensus        80 ~P~Kaa~~i~klL~sA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~prA~GRa~~~~k~~~HI~Iil~e~  150 (150)
T TIGR01038        80 YPVKAAKFILKVLQNAEANAEYKGLDVEKLVIIHIQANKGPKIRRWMPRAFGRATPYNSSPTHIELVVEEK  150 (150)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCCccCCCCCccCCCCCcccCCCceEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999874

This model describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23. The corresponding bacterial homolog, described by a separate model, is designated L22.

>PRK04223 rpl22p 50S ribosomal protein L22P; Reviewed

Probab=100.00  E-value=8.5e-54  Score=345.21  Aligned_cols=151  Identities=41%  Similarity=0.609  Sum_probs=147.1

Q ss_pred             CccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCC
Q 029751            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG   80 (188)
Q Consensus         1 ~~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~   80 (188)
                      |++||+++ +++++++|..+++++||+|+++||++||||++++|+++|++|+++|+||||++|++|+||++|+   +||+
T Consensus         3 ~~~ys~~~-~~~~~akA~~~~~rvS~kk~r~va~~IRG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~---~~~~   78 (153)
T PRK04223          3 RINYSVKA-DPEKTAKAMGRELPISPKHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPFKRHNKKVGHRKGI---DGWP   78 (153)
T ss_pred             ccccccCC-CCCceEEEEeCCCccChHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccc---cccc
Confidence            68999998 6999999999999999999999999999999999999999999999999999999999999987   7889


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCc
Q 029751           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE  155 (188)
Q Consensus        81 ~Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~  155 (188)
                      +||||+|+|+.|+|+|+||++||+++|+|+|+|||++++||+|++++|++|||+||++++.+++|||||+|+|.+
T Consensus        79 ~gr~PkKaa~~i~KlL~sA~aNA~~~gld~d~L~I~~i~v~kg~~~kR~~prA~GRa~~~~k~~sHI~Iil~e~~  153 (153)
T PRK04223         79 AGRYPVKAAKAFLKLLENAEANAEYKGLDTEKLVIVHIAAHKGRVIKGYMPRAFGRATPKNTETVNIEVILEEVE  153 (153)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCCCCCCcCcccCCCCCcccCCCceEEEEEEeCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999853

>COG0091 RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-40  Score=258.89  Aligned_cols=118  Identities=36%  Similarity=0.473  Sum_probs=113.5

Q ss_pred             ccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCC
Q 029751            4 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGR   83 (188)
Q Consensus         4 Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr   83 (188)
                      ||+..+ ++++++|..+++++||+|+++||++||||++++|+.+|+                           |      
T Consensus         1 y~~~~~-~~~~akA~~r~~riSpkk~r~Va~~IrG~~v~~A~~~L~---------------------------~------   46 (120)
T COG0091           1 YSAKVE-PEMEAKAKARYLRISPKKARLVADLIRGKKVAEALAILE---------------------------F------   46 (120)
T ss_pred             CCcccc-hhhhhHhhhccCcCChHHHHHHHHHHcCCcHHHHHHHHH---------------------------h------
Confidence            777775 889999999999999999999999999999999999999                           4      


Q ss_pred             CchhhhHHHHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCc
Q 029751           84 WPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE  155 (188)
Q Consensus        84 ~pkKaa~~i~klL~sA~aNA~~-kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~  155 (188)
                      .|+|+|+.|+|+|+||++||++ +|||+|+|||.|||||+||++||++|||+||++++++++|||||+|+|.+
T Consensus        47 ~pkKaa~~v~KvL~sA~aNAe~n~gLd~d~L~V~~i~v~~gp~lKR~~pRA~GRa~~i~k~tshItvvv~e~~  119 (120)
T COG0091          47 VPKKAAKLVKKVLESAIANAENNKGLDPDKLVVSHIAVDKGPVLKRFMPRARGRATRINKRTSHITVVVREKE  119 (120)
T ss_pred             ChHHHHHHHHHHHHHHHhhHHhccCCChHHEEEEEEEeCCCceeeeecccccCccccccCCCceEEEEEeecC
Confidence            7999999999999999999998 79999999999999999999999999999999999999999999999864

>CHL00034 rpl22 ribosomal protein L22

Probab=100.00  E-value=3e-38  Score=244.83  Aligned_cols=111  Identities=29%  Similarity=0.404  Sum_probs=107.0

Q ss_pred             CCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhh
Q 029751           10 NPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSA   89 (188)
Q Consensus        10 ~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa   89 (188)
                      .++++++|..+++++||+|+++||++||||++++|+.||+                           |      +|+|+|
T Consensus         5 ~~~~~~~A~~~~ir~SpkK~r~va~~IRG~~v~~A~~~L~---------------------------~------~pkk~a   51 (117)
T CHL00034          5 KSTTEVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILE---------------------------F------MPYRAC   51 (117)
T ss_pred             CCCceEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CcHHHH
Confidence            3668999999999999999999999999999999999999                           4      799999


Q ss_pred             HHHHHHHHHHHHHHH-HcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeee
Q 029751           90 KFILDLLKNAESNAE-VKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE  153 (188)
Q Consensus        90 ~~i~klL~sA~aNA~-~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E  153 (188)
                      +.|+++|+||.+||+ ++|+|+|+|||.|+|||+|+++||++|||+||++++++++|||+|+|+|
T Consensus        52 ~~i~klL~sA~aNA~~~~gld~d~L~I~~i~v~~G~~~KR~~prArGRa~~i~k~~sHI~Vvl~e  116 (117)
T CHL00034         52 YPILKLVYSAAANASHNMGLNKANLFISKAEVDEGPTLKRFRPRAQGRSYPIKKPTCHITIVLKD  116 (117)
T ss_pred             HHHHHHHHHHHHHHHHccCCCccceEEEEEEECCCCccCCCCcccCCCCCcccCCCccEEEEEec
Confidence            999999999999995 4799999999999999999999999999999999999999999999987

>PRK00565 rplV 50S ribosomal protein L22; Reviewed

Probab=100.00  E-value=4.7e-38  Score=241.69  Aligned_cols=110  Identities=31%  Similarity=0.414  Sum_probs=106.6

Q ss_pred             ceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHH
Q 029751           13 KSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFI   92 (188)
Q Consensus        13 ~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i   92 (188)
                      |+++|..+++++||+|+++||++||||++++|+.||+                           |      ||+|+|+.|
T Consensus         1 ~~~~A~~~~~~~SpkK~~~v~~~IrG~~v~~A~~~L~---------------------------~------~pkk~a~~i   47 (112)
T PRK00565          1 MEAKAKARYVRVSPRKARLVADLIRGKKVEEALAILK---------------------------F------SPKKAARLV   47 (112)
T ss_pred             CceEEEeCccccCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CcHhHHHHH
Confidence            4689999999999999999999999999999999999                           5      899999999


Q ss_pred             HHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCc
Q 029751           93 LDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE  155 (188)
Q Consensus        93 ~klL~sA~aNA~~-kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~  155 (188)
                      +++|+||.+||++ +|+|+|+|||.|+|||+|+++||++|||+||++++++++|||+|+|+|.+
T Consensus        48 ~k~L~sA~aNA~~~~g~d~~~L~I~~~~v~~G~~~Kr~~~rArGR~~~i~k~~~hi~vvL~e~~  111 (112)
T PRK00565         48 KKVLKSAIANAENNHGLDIDNLVVKEAYVDEGPTLKRFRPRARGRASRIRKRTSHITVVVAEKE  111 (112)
T ss_pred             HHHHHHHHHHHHhccCCChhHeEEEEEEECCCCccCCCCCCcCCCCCccccCCccEEEEEEecC
Confidence            9999999999998 89999999999999999999999999999999999999999999999864

>TIGR01044 rplV_bact ribosomal protein L22, bacterial type

Probab=100.00  E-value=5.1e-37  Score=232.92  Aligned_cols=102  Identities=30%  Similarity=0.377  Sum_probs=98.7

Q ss_pred             EeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHHHHHH
Q 029751           17 ARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLL   96 (188)
Q Consensus        17 A~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i~klL   96 (188)
                      |..+++++||+|+++||++||||+++||+.||+                           |      ||+|+|..|+|+|
T Consensus         1 a~~r~~r~SpkK~~~va~~IrG~~v~~A~~~L~---------------------------f------~pkk~a~~i~klL   47 (103)
T TIGR01044         1 AKARFVRISPRKARLVADLIRGKSVSQALDILR---------------------------F------TPKKAAPLIKKVL   47 (103)
T ss_pred             CcccccccCHHHHHHHHHHHcCCcHHHHHHHHh---------------------------h------CCHhHHHHHHHHH
Confidence            568999999999999999999999999999999                           6      8999999999999


Q ss_pred             HHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEe
Q 029751           97 KNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL  151 (188)
Q Consensus        97 ~sA~aNA~~-kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL  151 (188)
                      +||.+||++ +|+|+|+|||+|+|||+|+++||++|||+||++++++++|||+|+|
T Consensus        48 ~sA~aNA~~~~~ld~~~L~I~~~~v~~G~~~kr~~~rarGRa~~i~k~~~hi~vvl  103 (103)
T TIGR01044        48 ASAIANAEHNYGLDADNLVVVTIFVDEGPTLKRIRPRAKGRASRIRKRTSHITVVV  103 (103)
T ss_pred             HHHHHHHHHccCCChHheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEeC
Confidence            999999964 7999999999999999999999999999999999999999999986

This model decribes bacterial and chloroplast ribosomal protein L22.

>PF00237 Ribosomal_L22: Ribosomal protein L22p/L17e; InterPro: IPR001063 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=8e-36  Score=225.83  Aligned_cols=104  Identities=44%  Similarity=0.563  Sum_probs=100.3

Q ss_pred             EeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHHHHHH
Q 029751           17 ARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLL   96 (188)
Q Consensus        17 A~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i~klL   96 (188)
                      |..+++++||||++++|++||||++++|+.||+|                                 .|+|+|+.|+++|
T Consensus         1 A~~~~i~~S~kk~~~v~~~Irg~~v~~A~~~L~~---------------------------------~~~k~a~~i~k~L   47 (105)
T PF00237_consen    1 AKLRNIRISPKKLREVARLIRGMSVDEAIAQLKF---------------------------------VPKKAAKFILKLL   47 (105)
T ss_dssp             EEEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHH---------------------------------HSSHHHHHHHHHH
T ss_pred             CccccccCCHHHHHHHHHHHcCCCHHHHHHHHHh---------------------------------CcHHHHHHHHhhH
Confidence            6789999999999999999999999999999995                                 6999999999999


Q ss_pred             HHHHHHHH-HcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeee
Q 029751           97 KNAESNAE-VKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE  153 (188)
Q Consensus        97 ~sA~aNA~-~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E  153 (188)
                      +||.+||+ ++|+|+|+|||+++|||+|++++|++|||+||++++++++|||+|+|+|
T Consensus        48 ~~a~~nA~~~~g~d~~~L~I~~~~v~~g~~~kr~~~rArGR~~~~~k~~~hi~vvl~E  105 (105)
T PF00237_consen   48 KSAIANAENNKGLDPDNLYISEIWVNKGPYLKRIRPRARGRAGPIRKRTSHITVVLKE  105 (105)
T ss_dssp             HHHHHHHHHHCTSTCGGEEEEEEEEEEEEEEEEEEEECTTEEEEEEEEEEEEEEEEEE
T ss_pred             HHHHhhcccccccccCceEEEEEEEEecccccCCCcCcCCCccCeecCceEEEEEEeC
Confidence            99999999 6899999999999999999999999999999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L22 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L22 is known to bind 23S rRNA. It belongs to a family of ribosomal proteins which includes: bacterial L22; algal and plant chloroplast L22 (in legumes L22 is encoded in the nucleus instead of the chloroplast); cyanelle L22; archaebacterial L22; mammalian L17; plant L17 and yeast YL17.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3CD6_R 1Q7Y_S 1VQ6_R 1YI2_R 1QVF_Q 3CCR_R 3CCU_R 3CCL_R 1YJ9_R 3CCQ_R ....

>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e

Probab=100.00  E-value=3.5e-34  Score=216.68  Aligned_cols=104  Identities=47%  Similarity=0.622  Sum_probs=99.6

Q ss_pred             EEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHHHH
Q 029751           15 CKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILD   94 (188)
Q Consensus        15 ~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i~k   94 (188)
                      ++|..+++++||||+++++++||||+++||+.||+                           |      +|+|+|..|++
T Consensus         1 ~~a~~~~i~~S~kK~~~v~~~Irg~~v~~A~~~L~---------------------------~------~~kk~a~~i~k   47 (105)
T cd00336           1 AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLE---------------------------F------VPKKAAKIILK   47 (105)
T ss_pred             CEEEEccCccCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------h------CCHHHHHHHHH
Confidence            47899999999999999999999999999999999                           4      79999999999


Q ss_pred             HHHHHHHHHHHc-CCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEe
Q 029751           95 LLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL  151 (188)
Q Consensus        95 lL~sA~aNA~~k-glD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL  151 (188)
                      +|+||.+||+++ |+|+|+|||+|+|||+|++++|++|||+||++++++++|||+|+|
T Consensus        48 ~l~sa~~nA~~~~~~~~~~L~I~~~~v~~g~~~kr~~~rarGR~~~~~k~~~hi~ivl  105 (105)
T cd00336          48 LLKSAEANAENNGLDDPDKLYIKHIQVNKGPTLKRRRPRARGRANPIRKRTCHITVVL  105 (105)
T ss_pred             HHHHHHHhHHHcCCCCccceEEEEEEECCCCcccCCCcCCCCCCcccccCceeEEEeC
Confidence            999999999986 556999999999999999999999999999999999999999986

L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.

>KOG3353 consensus 60S ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-36  Score=248.86  Aligned_cols=158  Identities=66%  Similarity=1.026  Sum_probs=153.9

Q ss_pred             CCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCch
Q 029751            7 EPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPV   86 (188)
Q Consensus         7 ~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pk   86 (188)
                      +++|+++.++|++.++++|+|++++.+..|+++++..|+.+|.+|+.+++|+||++|+.|+|++.|+++ |||.+||||+
T Consensus         1 ~~~~~~k~~karg~~lrv~fKn~r~~~~~i~~~~~~~a~~~l~~v~~~~~c~p~~~~~~g~g~~~q~k~-~~~~~~rwpk   79 (175)
T KOG3353|consen    1 DPENPTKSCKARGSNLRVHFKNTRETAQTIKCMELLKATVYLKDVILQKICVPFRRYNGGVGRTAQAKQ-WGWTQGRWPK   79 (175)
T ss_pred             CccccchhhhcccccEEEEeccCcccchhhcCcccccceeeeccchhhcccccceecCCCcCccchhhh-hccccCcccc
Confidence            357888999999999999999999999999999999999999999999999999999999999999988 8999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCccccccccchh
Q 029751           87 KSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSL  165 (188)
Q Consensus        87 Kaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v~~~~~~~  165 (188)
                      |+|++++.+|+||.+||+.+|+|+|.|+|.|+.||++|.+.+.++||+||.+++.+.+|||++||.|.+++++++|+..
T Consensus        80 ksaefll~~LkN~esnaElkgldVDsLvIehiqvnkApKm~~rtyraHg~in~y~ssP~hie~il~~ke~~v~k~e~~~  158 (175)
T KOG3353|consen   80 KSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEV  158 (175)
T ss_pred             hHHHHHHHHHHhhhhcccccCcCcceeEeeehhhcccchhhhHHHHhhcccccccCChHHHHHHHHhhcccCCChhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999973

>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional

Probab=100.00  E-value=3.5e-34  Score=252.53  Aligned_cols=114  Identities=27%  Similarity=0.380  Sum_probs=108.3

Q ss_pred             ceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHH
Q 029751           13 KSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFI   92 (188)
Q Consensus        13 ~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i   92 (188)
                      |+++|.++++++||+|+++||++||||++++|+.+|+                           |      +|+|+|..|
T Consensus         1 M~akA~~r~iriSpkK~R~Va~~IRGk~v~~Al~~L~---------------------------~------~PkKaA~~I   47 (311)
T PRK12279          1 MTNKVIQRNIHISHRKASLVIDLVRNKPVHEAIRILS---------------------------N------TPKKFAPIV   47 (311)
T ss_pred             CceEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------h------CCHHHHHHH
Confidence            5689999999999999999999999999999999999                           4      799999999


Q ss_pred             HHHHHHHHHHHH--HcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCccccc
Q 029751           93 LDLLKNAESNAE--VKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVK  159 (188)
Q Consensus        93 ~klL~sA~aNA~--~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v~  159 (188)
                      +++|+||.+||+  ++|+|.|+|||.|++||+|+++||++|||+||++++++++|||||+|+|.....+
T Consensus        48 ~KlLkSA~ANAe~~n~gld~d~L~I~~~~VdkGp~lKR~~PRArGRA~~i~KrtsHItIvl~e~~~~~~  116 (311)
T PRK12279         48 LKLLNSAISNVQHNSKDMDPSKLYIYKIVANQGPTMKRTLPRAKGSADQLFKRTTHLEIVLSDDVNERE  116 (311)
T ss_pred             HHHHHHHHHHHHHhhcCCChhHeEEEEEEECCCCcccCCCCccCCCCCcccCCCccEEEEEecCCchhh
Confidence            999999999999  4899999999999999999999999999999999999999999999998665544

>KOG1711 consensus Mitochondrial/chloroplast ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=3.2e-25  Score=186.35  Aligned_cols=127  Identities=28%  Similarity=0.290  Sum_probs=114.7

Q ss_pred             ceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHH
Q 029751           13 KSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFI   92 (188)
Q Consensus        13 ~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i   92 (188)
                      .++.|-...++.|+||++.+|++|+||++++|+.||+                           |      +++|+|+.|
T Consensus        70 ~eVya~~~~Ik~S~kK~~~l~~lirgm~v~~AL~Ql~---------------------------~------s~kK~a~~i  116 (218)
T KOG1711|consen   70 PEVYACSKSIKSSPKKVWLLARLIRGMSVEEALMQLE---------------------------F------SDKKAAKTI  116 (218)
T ss_pred             hhHHHHHHHHHhCHHHHHHHHHHHcCCCHHHHHHHhh---------------------------c------chHHHHHHH
Confidence            5778889999999999999999999999999999999                           6      899999999


Q ss_pred             HHHHHHHHHHHHH-cCCCCCCeEE-EEEEEecCCccccceecCCCccccccccceeEEEEeeeCccccccccchhhhhhc
Q 029751           93 LDLLKNAESNAEV-KGLDVDALYI-SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRS  170 (188)
Q Consensus        93 ~klL~sA~aNA~~-kglD~d~L~I-~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v~~~~~~~~~~~~  170 (188)
                      .++|.+|.+||.+ +|+|+++|+| .++++++|..+||..++||||.+++++++|||+++|.|...+.+..-..+.+.++
T Consensus       117 ~~~l~~A~~nA~~~~gl~~~~l~v~~~~t~~~g~~~Krl~~hargr~~ii~~~yvhi~v~L~e~s~~~~~~~~~~~~~~~  196 (218)
T KOG1711|consen  117 AEVLLSARANAVHNHGLDPDSLLVVAEATVGQGNELKRLKVHARGRFGIIRRPYVHIFVKLEEGSPPQQRYPGKKAKHHS  196 (218)
T ss_pred             HHHHHHHHhhhHHhcCCCccceEEEEeeecccchhhhheeeeccCcccceecceeeEEEEEeecCCCchhhhhhhcchhc
Confidence            9999999999986 7999999999 9999999999999999999999999999999999999998888773333333444


Q ss_pred             cc
Q 029751          171 VN  172 (188)
Q Consensus       171 ~~  172 (188)
                      .+
T Consensus       197 ~e  198 (218)
T KOG1711|consen  197 SE  198 (218)
T ss_pred             ch
Confidence            33

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
3izr_V	171	Localization Of The Large Subunit Ribosomal Protein		8e-80
2zkr_r	184	Structure Of A Mammalian Ribosomal 60s Subunit With		8e-60
2ww9_I	184	Cryo-Em Structure Of The Active Yeast Ssh1 Complex		2e-52
3izs_V	170	Localization Of The Large Subunit Ribosomal Protein		2e-52
1s1i_N	183	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		1e-51
3jyw_N	150	Structure Of The 60s Proteins For Eukaryotic Riboso		3e-49
4a17_Q	183	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-44
3zf7_R	166	High-resolution Cryo-electron Microscopy Structure		1e-38
1s72_R	155	Refined Crystal Structure Of The Haloarcula Marismo		4e-18
1ffk_O	154	Crystal Structure Of The Large Ribosomal Subunit Fr		5e-18
3j21_S	155	Promiscuous Behavior Of Proteins In Archaeal Riboso		5e-18
3g4s_R	150	Co-Crystal Structure Of Tiamulin Bound To The Large		1e-17
1yj9_R	152	Crystal Structure Of The Mutant 50s Ribosomal Subun		2e-16

>pdb|3IZR|V Chain V, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 171

Iteration: 1
 Score =  292 bits (747), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 150/169 (88%)
Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MVKYS+E +NPTKS KA G DLRVHFKNTRE A A+RKL L KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+C GVGRTAQAK+R+ NGQGRWP KSA+FILDLLKNAESNAEVKGLDVD LY+SHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQV 120
Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVR 169
           NQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE  S +  R
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQIAAR 169

>pdb|2ZKR|RR Chain r, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 184

Iteration: 1
 Score =  226 bits (575), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 108/160 (67%), Positives = 130/160 (81%), Gaps = 1/160 (0%)
Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct: 61  RRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119
Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160
           N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K
Sbjct: 120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159

>pdb|2WW9|I Chain I, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 184

Iteration: 1
 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/160 (61%), Positives = 113/160 (70%), Gaps = 1/160 (0%)
Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           M +Y     NP KS  ARGS LRV FKNTRE A A+    LTKA++YLE V+ H++AIPF
Sbjct: 1   MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPF 60
Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQV
Sbjct: 61  RRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQV 119
Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160
           NQA KQRRRTYRAHGRIN Y SSP HIEL ++EKEE V K
Sbjct: 120 NQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAK 159

>pdb|3IZS|V Chain V, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 170

Iteration: 1
 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/160 (61%), Positives = 113/160 (70%), Gaps = 1/160 (0%)
Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           M +Y     NP KS  ARGS LRV FKNTRE A A+    LTKA++YLE V+ H++AIPF
Sbjct: 1   MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPF 60
Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQV
Sbjct: 61  RRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQV 119
Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160
           NQA KQRRRTYRAHGRIN Y SSP HIEL ++EKEE V K
Sbjct: 120 NQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAK 159

>pdb|1S1I|N Chain N, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 183

Iteration: 1
 Score =  199 bits (505), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFT 61
            +Y     NP KS  ARGS LRV FKNTRE A A+    LTKA++YLE V+ H++AIPF 
Sbjct: 1   ARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFR 60
Query: 62  RFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVN
Sbjct: 61  RFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVN 119
Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160
           QA KQRRRTYRAHGRIN Y SSP HIEL ++EKEE V K
Sbjct: 120 QAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAK 158

>pdb|3JYW|N Chain N, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 150

Iteration: 1
 Score =  191 bits (484), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/151 (61%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Query: 4   YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRF 63
           Y     NP KS  ARGS LRV FKNTRE A A+    LTKA++YLE V+ H++AIPF RF
Sbjct: 1   YGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRF 60
Query: 64  CRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQA 123
              +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQA
Sbjct: 61  NSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQA 119
Query: 124 QKQRRRTYRAHGRINPYMSSPCHIELTLSEK 154
            KQRRRTYRAHGRIN Y SSP HIEL ++EK
Sbjct: 120 PKQRRRTYRAHGRINKYESSPSHIELVVTEK 150

>pdb|4A17|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 183

Iteration: 1
 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 4   YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRF 63
           YS+EP N  K+ K   SDLRVHFKNT E   A++ L+L  AKRYL+ V+  K+ IPFTRF
Sbjct: 6   YSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRF 65
Query: 64  CRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQA 123
              +GRTAQA       QGRWPVKS K IL LL N  +NA+ K L+   L I H QVN+A
Sbjct: 66  TGCIGRTAQAHEFGRT-QGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVNRA 124
Query: 124 QKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161
           QK RRRTYRAHGRINPY++S CH+E+   E    V+KE
Sbjct: 125 QKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRKE 162

>pdb|3ZF7|R Chain R, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 166

Iteration: 1
 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 109/162 (67%), Gaps = 3/162 (1%)
Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MV YS++P   +K+ KA+ +DLR H+KNT E A+ +  + L KA++    V+A  + IPF
Sbjct: 1   MVHYSRKPQVSSKTAKAKIADLRCHYKNTFETANVINGMKLRKAQQLYRQVLAKTRCIPF 60
Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+   +G TAQAK      +GRWP KS   +L LLKNAE+NA  KGLD   + I H+QV
Sbjct: 61  KRYNGKIGNTAQAKEWG-QTKGRWPRKSVVAMLSLLKNAEANAIEKGLDPGKMVIKHVQV 119
Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE--PVKK 160
           +QA + RRRT+RAHGRI PYM SPCH++L +++ +E  PV K
Sbjct: 120 DQAPRVRRRTFRAHGRITPYMRSPCHVQLFMTQPQERVPVPK 161

>pdb|1S72|R Chain R, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 155

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 4/154 (2%)
Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  ++  +  +A  YLE V+   Q +PF 
Sbjct: 3   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 61
Query: 62  RFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++    +    GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 62  QHNSGVGHKSKVDGWD---AGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 118
Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE 155
           +  +Q+ R  RA GR + + S    +EL L E E
Sbjct: 119 KVGEQQGRKPRAMGRASAWNSPQVDVELILEEPE 152

>pdb|1FFK|O Chain O, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 154

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 4/154 (2%)
Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  ++  +  +A  YLE V+   Q +PF 
Sbjct: 2   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 60
Query: 62  RFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++    +    GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 61  QHNSGVGHKSKVDGWD---AGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 117
Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE 155
           +  +Q+ R  RA GR + + S    +EL L E E
Sbjct: 118 KVGEQQGRKPRAMGRASAWNSPQVDVELILEEPE 151

>pdb|3J21|S Chain S, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 155

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
Query: 4   YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRF 63
           YS +  +P +  +A   DLR+  K   E    LR + L  A RYL+DV+A K+ +P  R+
Sbjct: 7   YSFQNFDPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRY 66
Query: 64  CRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQA 123
               G     K     G GR+PVK AK I  +L N ++NA  KGLD D L I HI  ++ 
Sbjct: 67  NDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKG 122
Query: 124 QKQRRRTYRAHGRINPYMSSPCHIELTLSE 153
              R    RA GR  P+     HIE+ + E
Sbjct: 123 PVLRGWYPRAFGRATPFNEQTTHIEVVVEE 152

>pdb|3G4S|R Chain R, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 150

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  ++  +  +A  YLE V+   Q +PF 
Sbjct: 2   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 60
Query: 62  RFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++    +    GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 61  QHNSGVGHKSKVDGWD---AGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 117
Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSE 153
           +  +Q+ R  RA GR + + S    +EL L E
Sbjct: 118 KVGEQQGRKPRAMGRASAWNSPQVDVELILEE 149

>pdb|1YJ9|R Chain R, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22 Length = 152

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  ++  +  +A  YLE V+   Q +PF 
Sbjct: 3   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 61
Query: 62  RFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++    +    GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+   
Sbjct: 62  QHNSGVGHKSKVDGWD---AGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHV--- 115
Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE 155
            A K   R  RA GR + + S    +EL L E E
Sbjct: 116 AAHKVGERKPRAMGRASAWNSPQVDVELILEEPE 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
3iz5_V	171	60S ribosomal protein L17 (L22P); eukaryotic ribos	2e-79
3u5e_P	184	L20A, YL17, 60S ribosomal protein L17-A; translati	1e-72
2zkr_r	184	60S ribosomal protein L17; protein-RNA complex, 60	2e-71
4a17_Q	183	RPL17, 60S ribosomal protein L21; eukaryotic ribos	2e-70
1vq8_R	155	50S ribosomal protein L22P; ribosome 50S, protein-	3e-69
2zjr_P	134	50S ribosomal protein L22; ribosome, large ribosom	1e-11
1i4j_A	110	50S ribosomal protein L22; mutant, erythromycin re	2e-11
3r8s_S	110	50S ribosomal protein L22; protein biosynthesis, R	3e-11
3bbo_U	199	Ribosomal protein L22; large ribosomal subunit, sp	4e-10
2ftc_M	110	Mitochondrial ribosomal protein L22 isoform A; mit	8e-10

>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V 3jyw_N Length = 184

 Score =  216 bits (551), Expect = 1e-72
 Identities = 98/161 (60%), Positives = 113/161 (70%), Gaps = 1/161 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           M +Y     NP KS  ARGS LRV FKNTRE A A+    LTKA++YLE V+ H++AIPF
Sbjct: 1   MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQV
Sbjct: 61  RRFNSSIGRTAQGKEFG-VTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 161
           NQA KQRRRTYRAHGRIN Y SSP HIEL ++EKEE V K 
Sbjct: 120 NQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAKA 160

>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 184

 Score =  213 bits (543), Expect = 2e-71
 Identities = 109/175 (62%), Positives = 137/175 (78%), Gaps = 1/175 (0%)

Query: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPF 60
           MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query: 61  TRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
            R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQV
Sbjct: 61  RRYNGGVGRCAQAKQWG-WTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQV 119

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRK 175
           N+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K    + + + ++ +K
Sbjct: 120 NKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKK 174

>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Length = 183

 Score =  210 bits (537), Expect = 2e-70
 Identities = 90/174 (51%), Positives = 110/174 (63%), Gaps = 1/174 (0%)

Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFT 61
             YS+EP N  K+ K   SDLRVHFKNT E   A++ L+L  AKRYL+ V+  K+ IPFT
Sbjct: 4   TNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFT 63

Query: 62  RFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           RF   +GRTAQA       QGRWPVKS K IL LL N  +NA+ K L+   L I H QVN
Sbjct: 64  RFTGCIGRTAQAH-EFGRTQGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVN 122

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRK 175
           +AQK RRRTYRAHGRINPY++S CH+E+   E    V+KE       +    +K
Sbjct: 123 RAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRKEAPKDAAKKVPKTKK 176

>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Length = 155

 Score =  206 bits (526), Expect = 3e-69
 Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 4/155 (2%)

Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  ++  +  +A  YLE V+   Q +PF 
Sbjct: 3   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 61

Query: 62  RFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++    +    GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 62  QHNSGVGHKSKVDGWD---AGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 118

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156
           +  +Q+ R  RA GR + + S    +EL L E E 
Sbjct: 119 KVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEV 153

>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Length = 134

 Score = 58.0 bits (141), Expect = 1e-11
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 85  PVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
           P  +++ +  +L +A++NA     +  D L++    V+     +R   RA G  N     
Sbjct: 61  PRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKR 120

Query: 144 PCHIELTLSEKEE 156
             HI + ++EK  
Sbjct: 121 TSHITIIVAEKGN 133

>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Length = 110

 Score = 57.1 bits (139), Expect = 2e-11
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 85  PVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
             + A F+  +L++A +NA        D LY+    V++         RA GR +     
Sbjct: 40  NKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVLP---RARGRADIIKKR 96

Query: 144 PCHIELTLSEKEE 156
             HI + L EK  
Sbjct: 97  TSHITVILGEKHG 109

>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Length = 110

 Score = 56.7 bits (138), Expect = 3e-11
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 85  PVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
             K+A  +  +L++A +NAE   G D+D L ++ I V++    +R   RA GR +  +  
Sbjct: 40  NKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKR 99

Query: 144 PCHIELTLSEK 154
             HI + +S++
Sbjct: 100 TSHITVVVSDR 110

>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 199

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 85  PVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
           P ++   I  L+ +A +NA   K  +   L IS  +VN+    ++   RA GR    +  
Sbjct: 69  PYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRP 128

Query: 144 PCHIELTLSEKEE 156
            CHI + L +   
Sbjct: 129 TCHITIVLRDITH 141

>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Length = 110

 Score = 52.9 bits (128), Expect = 8e-10
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 85  PVKSAKFILDLLKNAESNAEV-KGLDV-DALYISHIQVNQAQKQRRRTYRAHGRINPYMS 142
             K AK I ++L  A+  A     ++    LYI+     + Q  +R  Y   GR      
Sbjct: 36  DKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEK 95

Query: 143 SPCHIELTLSEKEEP 157
             CH  + L E   P
Sbjct: 96  VYCHYFVKLVEGPPP 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
4a17_Q	183	RPL17, 60S ribosomal protein L21; eukaryotic ribos	100.0
3iz5_V	171	60S ribosomal protein L17 (L22P); eukaryotic ribos	100.0
3u5e_P	184	L20A, YL17, 60S ribosomal protein L17-A; translati	100.0
2zkr_r	184	60S ribosomal protein L17; protein-RNA complex, 60	100.0
1vq8_R	155	50S ribosomal protein L22P; ribosome 50S, protein-	100.0
3j21_S	155	50S ribosomal protein L22P; archaea, archaeal, KIN	100.0
3r8s_S	110	50S ribosomal protein L22; protein biosynthesis, R	100.0
2ftc_M	110	Mitochondrial ribosomal protein L22 isoform A; mit	100.0
2zjr_P	134	50S ribosomal protein L22; ribosome, large ribosom	100.0
1i4j_A	110	50S ribosomal protein L22; mutant, erythromycin re	100.0
3bbo_U	199	Ribosomal protein L22; large ribosomal subunit, sp	100.0

>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q

Probab=100.00  E-value=2.8e-62  Score=402.61  Aligned_cols=164  Identities=54%  Similarity=0.817  Sum_probs=155.0

Q ss_pred             CccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCC
Q 029751            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG   80 (188)
Q Consensus         1 ~~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~   80 (188)
                      |++||++++||+++|+|+++++++||+|+++||++||||++++|+.+|++|+++|+||||++||+||||++|+++ |||.
T Consensus         3 m~~Ys~~~~~p~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~-~g~~   81 (183)
T 4a17_Q            3 KTNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHE-FGRT   81 (183)
T ss_dssp             CCCCSSCCSCTTSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGG-TTCS
T ss_pred             ccccCCCCCCCCeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhh-cCCc
Confidence            889999999999999999999999999999999999999999999999999999999999999999999999998 9999


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcccccc
Q 029751           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK  160 (188)
Q Consensus        81 ~Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v~~  160 (188)
                      +||||+|+|++|++||+||++||+++|||.|+|||+||+||+||+++|++|||+||++++++++|||||+|+|.+++||+
T Consensus        82 ~Gr~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~GRa~pi~k~~~HIeiil~Eke~~v~k  161 (183)
T 4a17_Q           82 QGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVNRAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRK  161 (183)
T ss_dssp             BEECCHHHHHHHHHHHHHHHHHTTTTTCCSTTEEEEEEEEEECCCEEEEEEETTTEEEEEEECCEEEEEEEEECCCC---
T ss_pred             cCcCcHHHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEECCCCcccCcCccCCCCcCCccCCCCCEEEEEeeccccCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchh
Q 029751          161 EVGSL  165 (188)
Q Consensus       161 ~~~~~  165 (188)
                      |||+.
T Consensus       162 ~~~~~  166 (183)
T 4a17_Q          162 EAPKD  166 (183)
T ss_dssp             -----
T ss_pred             chhhh
Confidence            97754

>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N

Probab=100.00  E-value=8.8e-62  Score=400.34  Aligned_cols=163  Identities=60%  Similarity=0.902  Sum_probs=160.0

Q ss_pred             CccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCC
Q 029751            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG   80 (188)
Q Consensus         1 ~~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~   80 (188)
                      |++||++++||+++|+|+++++++||+|+++||++||||++++|+.+|++|+++|+||||++||+||||++|+++ |||+
T Consensus         1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~-~g~~   79 (184)
T 3u5e_P            1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKE-FGVT   79 (184)
T ss_dssp             -CCCSCCCSCGGGEEEEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGG-GTCS
T ss_pred             CCccCCCCCCCCceEEEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhc-cCCc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999998 8999


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcccccc
Q 029751           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK  160 (188)
Q Consensus        81 ~Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v~~  160 (188)
                      +||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||||+|+|.++++||
T Consensus        80 ~GR~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~~i~Vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~e~~v~k  159 (184)
T 3u5e_P           80 KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAK  159 (184)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHTTCCTTTEEEEEEEEEECCCEEEEEEEGGGEEEEEEECCEEEEEEEEECCCCCCC
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccch
Q 029751          161 EVGS  164 (188)
Q Consensus       161 ~~~~  164 (188)
                      |+|+
T Consensus       160 ~~~~  163 (184)
T 3u5e_P          160 AAEK  163 (184)
T ss_dssp             CCCC
T ss_pred             cHHH
Confidence            9774

>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=4.4e-61  Score=396.27  Aligned_cols=163  Identities=66%  Similarity=1.039  Sum_probs=149.1

Q ss_pred             CccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCC
Q 029751            1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG   80 (188)
Q Consensus         1 ~~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~   80 (188)
                      |++||++++||+++++|+++++++||+|+++||++||||++++|+.||++||++|+||||++||+|+||++|+++ |||+
T Consensus         1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~-~~~~   79 (184)
T 2zkr_r            1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQ-WGWT   79 (184)
T ss_dssp             -CCCSSCCSCTTTEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTS-CSCS
T ss_pred             CCccCCCCCCCCeeEEEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccc-cccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999998 9999


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcccccc
Q 029751           81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK  160 (188)
Q Consensus        81 ~Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v~~  160 (188)
                      +||||+|+|++|++||+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||||+|+|.++.+++
T Consensus        80 ~GR~PkKaa~~ilklLksA~aNAe~kglD~d~L~I~~i~Vnkg~~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~~~v~k  159 (184)
T 2zkr_r           80 QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK  159 (184)
T ss_dssp             BEECCHHHHHHHHHHHHHHHHHHHHHTSCTTTCEEEEEEEC-CCCEEEEEEETTTEEEEEEEC-CCEEEEEECC------
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccCcCCCCCCCCCCCCccCCCceEEEEEEEcCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccch
Q 029751          161 EVGS  164 (188)
Q Consensus       161 ~~~~  164 (188)
                      |+++
T Consensus       160 ~~~~  163 (184)
T 2zkr_r          160 PEEE  163 (184)
T ss_dssp             ----
T ss_pred             chhh
Confidence            8765

>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...

Probab=100.00  E-value=2.8e-58  Score=370.87  Aligned_cols=152  Identities=32%  Similarity=0.528  Sum_probs=146.8

Q ss_pred             ccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCC
Q 029751            2 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ   81 (188)
Q Consensus         2 ~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~   81 (188)
                      ++||+ ++||+++++|.++++++||||+++||++||||++++|+.||++|+++|+||||++||+|+||++|+   |||++
T Consensus         3 ~~Ys~-~~~~~k~~kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~---~~~~~   78 (155)
T 1vq8_R            3 ISYSV-EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKV---DGWDA   78 (155)
T ss_dssp             CCCSS-CCCGGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTC---SSSSB
T ss_pred             cccCC-CCCCCceEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccc---ccccc
Confidence            68999 889999999999999999999999999999999999999999999999999999999999999998   89999


Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCccc
Q 029751           82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEP  157 (188)
Q Consensus        82 Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~  157 (188)
                      ||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|+++||++|||+||++++++++|||||+|+|.++.
T Consensus        79 gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~v~kg~~~kR~~pRA~GRa~~~~k~~~HI~vil~E~~~~  154 (155)
T 1vq8_R           79 GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEVE  154 (155)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC---
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccccCCCCCCCCCCCceeCCCccEEEEEEecCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987643

>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2e-58  Score=371.73  Aligned_cols=150  Identities=37%  Similarity=0.533  Sum_probs=147.3

Q ss_pred             ccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCC
Q 029751            2 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ   81 (188)
Q Consensus         2 ~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~   81 (188)
                      |+||++++||+++++|+++++++||||+++||++||||++++|+.||++|+++|+||||++||+||||++|    |||++
T Consensus         5 ~~Ys~~~~~~~~~akA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~----~~~~~   80 (155)
T 3j21_S            5 FGYSFQNFDPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPG----KGFGP   80 (155)
T ss_dssp             -CCCSCCCHHHHEEEEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCS----SSCSB
T ss_pred             eecccCCCCCCeeEEEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccc----cCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998    89999


Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCc
Q 029751           82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE  155 (188)
Q Consensus        82 Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~  155 (188)
                      ||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||||+|+|.+
T Consensus        81 gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~vnkgp~~kR~~pRA~GR~~~~~k~~~HI~vil~E~~  154 (155)
T 3j21_S           81 GRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVVEEIR  154 (155)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEEEECCEEECSTTCEEECCEEEEEEEEEEECCC
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEecCCCcccCCCCCCCCCCCceecCCccEEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999875

>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...

Probab=100.00  E-value=4.1e-41  Score=257.02  Aligned_cols=109  Identities=26%  Similarity=0.349  Sum_probs=106.0

Q ss_pred             ceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHH
Q 029751           13 KSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFI   92 (188)
Q Consensus        13 ~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i   92 (188)
                      |+++|.++++++||+|+++||++||||++++|+.||+                           |      ||+|+|++|
T Consensus         1 me~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~---------------------------f------~pkkaa~~v   47 (110)
T 3r8s_S            1 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILT---------------------------Y------TNKKAAVLV   47 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH---------------------------H------CCCHHHHHH
T ss_pred             CeEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHh---------------------------h------CCHHHHHHH
Confidence            5799999999999999999999999999999999999                           5      899999999


Q ss_pred             HHHHHHHHHHHHHc-CCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeC
Q 029751           93 LDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK  154 (188)
Q Consensus        93 ~klL~sA~aNA~~k-glD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~  154 (188)
                      +++|+||++||+++ |+|+|+|||+|+|||+||++||++|||+||++++++++|||||+|+|+
T Consensus        48 ~k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~~~KR~~pRA~GR~~~i~k~~~HI~vvl~ek  110 (110)
T 3r8s_S           48 KKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR  110 (110)
T ss_dssp             HHHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHhHHHhcCCChhheEEEEEEeCCCCccCCCCcCCCCCCCCcccCCccEEEEEecC
Confidence            99999999999986 999999999999999999999999999999999999999999999974

>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M

Probab=100.00  E-value=2.1e-39  Score=247.62  Aligned_cols=107  Identities=24%  Similarity=0.288  Sum_probs=102.5

Q ss_pred             eeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHHHHHHH
Q 029751           18 RGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLK   97 (188)
Q Consensus        18 ~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i~klL~   97 (188)
                      ..+++++||+|+++||++||||++++|+.||+                           |      ||+|+|+.|+++|+
T Consensus         2 ~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~---------------------------f------~pkkaa~~v~klL~   48 (110)
T 2ftc_M            2 CRRQIKYSKDKMWYLAKLIRGMSIDQALAQLE---------------------------F------NDKKGAKIIKEVLL   48 (110)
T ss_pred             CcccceeCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CCHHHHHHHHHHHH
Confidence            36899999999999999999999999999999                           5      89999999999999


Q ss_pred             HHHHHHHH-cCCC-CCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCccc
Q 029751           98 NAESNAEV-KGLD-VDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEP  157 (188)
Q Consensus        98 sA~aNA~~-kglD-~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~  157 (188)
                      ||++||++ +|+| +|+|||+|++||+|+++||++|||+||++++++++|||||+|+|.+++
T Consensus        49 sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~KR~~prA~GRa~~i~k~~~HI~vvl~e~~~p  110 (110)
T 2ftc_M           49 EAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPP  110 (110)
T ss_pred             HHHHhHHHhcCCCCccCeEEEEEEECCCCcccCCCCCCCCCCCccccCCccEEEEEEeCCCC
Confidence            99999998 7999 899999999999999999999999999999999999999999997653

>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...

Probab=100.00  E-value=5.1e-40  Score=258.97  Aligned_cols=112  Identities=22%  Similarity=0.271  Sum_probs=107.7

Q ss_pred             CceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHH
Q 029751           12 TKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKF   91 (188)
Q Consensus        12 ~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~   91 (188)
                      +++++|.++++++||+|+++||++||||++++|+.||+                           |      ||+|+|++
T Consensus        21 ~~~akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~---------------------------f------~pkKaA~~   67 (134)
T 2zjr_P           21 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR---------------------------F------IPRSASEP   67 (134)
T ss_dssp             CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHH---------------------------H------CCCTTHHH
T ss_pred             ceEEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CcHhHHHH
Confidence            46799999999999999999999999999999999999                           4      89999999


Q ss_pred             HHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcc
Q 029751           92 ILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE  156 (188)
Q Consensus        92 i~klL~sA~aNA~~-kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~  156 (188)
                      |+++|+||.+||++ +|+|+|+|||+|++||+||++||++|||+||++++++++|||+|+|+|.++
T Consensus        68 v~klL~sA~aNAe~n~gld~d~L~I~~i~V~~Gp~lKR~~pRA~GRa~~i~k~tsHItvvl~E~~~  133 (134)
T 2zjr_P           68 VAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGN  133 (134)
T ss_dssp             HHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECCCEEEEEECSTTCEEEEEECCEEEEEEEEECCC
T ss_pred             HHHHHHHHHHhHHHhcCCChhheEEEEEEECCCccccCCCCCCCCCCcccccCCceEEEEEEecCC
Confidence            99999999999995 899999999999999999999999999999999999999999999998653

>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...

Probab=100.00  E-value=1.9e-39  Score=247.77  Aligned_cols=108  Identities=26%  Similarity=0.304  Sum_probs=104.0

Q ss_pred             ceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHH
Q 029751           13 KSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFI   92 (188)
Q Consensus        13 ~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i   92 (188)
                      |+++|.++++++||+|+++||++||||++++|+.||+                           |      ||+|+|++|
T Consensus         1 ~~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~---------------------------~------~pkkaa~~v   47 (110)
T 1i4j_A            1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILR---------------------------Y------TNKRGAYFV   47 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH---------------------------H------CCCTTHHHH
T ss_pred             CeEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CCHHHHHHH
Confidence            4689999999999999999999999999999999999                           4      899999999


Q ss_pred             HHHHHHHHHHHHHc-CCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcc
Q 029751           93 LDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE  156 (188)
Q Consensus        93 ~klL~sA~aNA~~k-glD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~  156 (188)
                      +++|+||++||+++ |+|+|+|||+|++||+||+   ++|||+||++++++++|||||+|+|.++
T Consensus        48 ~klL~sA~aNAe~n~gld~d~L~I~~~~v~~g~~---~~pRA~GRa~~i~k~~~HItvvl~e~~~  109 (110)
T 1i4j_A           48 AKVLESAAANAVNNHDALEDRLYVKAAYVDEGPA---VLPRARGRADIIKKRTSHITVILGEKHG  109 (110)
T ss_dssp             HHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEE---ECSCSSSCCCSCCEEEEEEEEEEEESSC
T ss_pred             HHHHHHHHHhHHHhcCCChhheEEEEEEECCCCe---EeecCCCCCcccccCCeeEEEEEEecCC
Confidence            99999999999986 9999999999999999999   9999999999999999999999998753

>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=3.2e-40  Score=274.14  Aligned_cols=124  Identities=22%  Similarity=0.294  Sum_probs=109.5

Q ss_pred             ccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCC
Q 029751            2 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ   81 (188)
Q Consensus         2 ~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~   81 (188)
                      ++|+..++|++++++|.++++++||+|+++||++||||++++|+.||+                           |    
T Consensus        19 y~~~~~~~n~~~eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~---------------------------f----   67 (199)
T 3bbo_U           19 YGLHHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILE---------------------------L----   67 (199)
T ss_dssp             -----------CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGG---------------------------G----
T ss_pred             ccCCCCCCCCCeEEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHH---------------------------H----
Confidence            467888899999999999999999999999999999999999999999                           5    


Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcccc
Q 029751           82 GRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPV  158 (188)
Q Consensus        82 Gr~pkKaa~~i~klL~sA~aNA~~-kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~v  158 (188)
                        +|+|+|.+|+++|+||++||++ +|+|+|+|||+||+||+||++||++|||+||++++++++|||||+|+|.+++.
T Consensus        68 --~PkKaA~~V~KlLkSA~ANAe~n~GLD~d~L~I~~i~VnkGp~lKR~~pRArGRa~~I~KrtsHItVVL~E~~~~~  143 (199)
T 3bbo_U           68 --MPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLRDITHFD  143 (199)
T ss_dssp             --CCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCBCCCCCCCCCSSSSCSCCCCCCCBCCCCEEECCCCCC
T ss_pred             --CCHhHHHHHHHHHHHHHHhHHhccCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeCCchH
Confidence              7999999999999999999998 69999999999999999999999999999999999999999999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1vqor1	150	d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon	1e-50
d2gycq1	106	d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escheric	3e-14
d2zjrp1	127	d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococ	1e-13
d1i4ja_	110	d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquat	5e-10

>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  158 bits (400), Expect = 1e-50
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  ++  +  +A  YLE V+   Q +PF 
Sbjct: 2   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 60

Query: 62  RFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 61  QHNSGVGHKSKVDGW---DAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 117

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSE 153
           +  +Q+ R  RA GR + + S    +EL L E
Sbjct: 118 KVGEQQGRKPRAMGRASAWNSPQVDVELILEE 149

>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Length = 106

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Escherichia coli [TaxId: 562]

 Score = 63.3 bits (154), Expect = 3e-14
 Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 34/139 (24%)

Query: 17  ARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNR 76
           A+    R   +  R  A  +R   +++A   L                            
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILT--------------------------- 33

Query: 77  NPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHG 135
                     K+A  +  +L++A +NAE   G D+D L ++ I V++    +R   RA G
Sbjct: 34  ------YTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKG 87

Query: 136 RINPYMSSPCHIELTLSEK 154
           R +  +    HI + +S++
Sbjct: 88  RADRILKRTSHITVVVSDR 106

>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 62.5 bits (152), Expect = 1e-13
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 34/155 (21%)

Query: 3   KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTR 62
           K  K+     K   A    +R+  +  R     +R  S+  A+  L              
Sbjct: 5   KQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR------------- 51

Query: 63  FCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVN 121
                                 P  +++ +  +L +A++NA     +  D L++    V+
Sbjct: 52  --------------------FIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVD 91

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156
                +R   RA G  N       HI + ++EK  
Sbjct: 92  AGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGN 126

>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]

 Score = 52.1 bits (125), Expect = 5e-10
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 37/142 (26%)

Query: 16  KARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKN 75
           KA    +R+  +  R     +R  SL +A+  L                           
Sbjct: 4   KAIARYVRISPRKVRLVVDLIRGKSLEEARNILR-------------------------- 37

Query: 76  RNPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAH 134
                      + A F+  +L++A +NA        D LY+    V++      R   A 
Sbjct: 38  -------YTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVLPR---AR 87

Query: 135 GRINPYMSSPCHIELTLSEKEE 156
           GR +       HI + L EK  
Sbjct: 88  GRADIIKKRTSHITVILGEKHG 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1vqor1	150	Ribosomal protein L22 {Archaeon Haloarcula marismo	100.0
d2zjrp1	127	Ribosomal protein L22 {Deinococcus radiodurans [Ta	100.0
d1i4ja_	110	Ribosomal protein L22 {Thermus aquaticus, subsp. T	100.0
d2gycq1	106	Ribosomal protein L22 {Escherichia coli [TaxId: 56	100.0
d1r9pa_	134	NifU-like protein HI0377 {Haemophilus influenzae [	84.34

>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=5.2e-50  Score=318.99  Aligned_cols=148  Identities=33%  Similarity=0.552  Sum_probs=143.9

Q ss_pred             ccccCCCCCCCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCC
Q 029751            2 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ   81 (188)
Q Consensus         2 ~~Ys~~~~~~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~   81 (188)
                      ++||++. ||+++++|+++++++||||+++||++||||++++|+.||++|+.++++|||++|+++++|+++.   +||..
T Consensus         2 ~~y~~~~-~~~~~~kA~~~~~riS~kK~~~va~~IrGk~v~~A~~~L~~v~~kk~avp~~~~~~~v~~~~~~---~~~~~   77 (150)
T d1vqor1           2 ISYSVEA-DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKV---DGWDA   77 (150)
T ss_dssp             CCCSSCC-CTTTEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTC---SSCSB
T ss_pred             CcccccC-CCCceEEEEeCCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhh---cCCCc
Confidence            6899985 8899999999999999999999999999999999999999999999999999999999999875   67899


Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeee
Q 029751           82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE  153 (188)
Q Consensus        82 Gr~pkKaa~~i~klL~sA~aNA~~kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E  153 (188)
                      |+||+|+|+.|+++|+||.+||+++|+|+|+|||+++|||+|+++||++|||+||++++++++|||+|+|+|
T Consensus        78 g~~p~kaa~~i~kll~sa~aNA~~~~~d~~~L~I~~~~v~kG~~~KR~~prArGRa~~i~k~~~hi~vvL~E  149 (150)
T d1vqor1          78 GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEE  149 (150)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEEC
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCccccCcCcccCCCCCCccCCCceEEEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997

>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=3.4e-37  Score=239.00  Aligned_cols=113  Identities=22%  Similarity=0.262  Sum_probs=107.6

Q ss_pred             CCceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhH
Q 029751           11 PTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAK   90 (188)
Q Consensus        11 ~~~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~   90 (188)
                      +.+++.|..+++++||+|+++|+++||||+++||+.||+                           |      +|+|+|.
T Consensus        13 ~~~~~~A~~k~ir~Sp~K~r~v~~~IrG~~v~eAl~~L~---------------------------f------~~kkaa~   59 (127)
T d2zjrp1          13 LRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR---------------------------F------IPRSASE   59 (127)
T ss_dssp             CCCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHH---------------------------H------CCCTTHH
T ss_pred             ccchhhhhhcccccCHHHHHHHHHHHcCCcHHHHHHHHh---------------------------c------CCchhhh
Confidence            445678999999999999999999999999999999999                           4      8999999


Q ss_pred             HHHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcc
Q 029751           91 FILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE  156 (188)
Q Consensus        91 ~i~klL~sA~aNA~~-kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~  156 (188)
                      .|.++|+||.+||++ +|+|+|+|||.++|||+|+++||++|||+||++++++++|||+|+|+|++.
T Consensus        60 ~v~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~G~~~KR~~prArGRa~~i~k~~sHi~VvL~e~~~  126 (127)
T d2zjrp1          60 PVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGN  126 (127)
T ss_dssp             HHHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECCCEEEEEECSTTCEEEEEECCEEEEEEEEECCC
T ss_pred             hHHHHHHHHHHHHHhcccCcccceEEEEEEECCCCcccCCCCCcCCCCCcccCCcccEEEEEEecCC
Confidence            999999999999997 699999999999999999999999999999999999999999999999764

>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]

Probab=100.00  E-value=9.2e-37  Score=231.33  Aligned_cols=108  Identities=26%  Similarity=0.302  Sum_probs=103.2

Q ss_pred             ceEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHH
Q 029751           13 KSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFI   92 (188)
Q Consensus        13 ~~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i   92 (188)
                      |+++|..+++++||+|+++||++||||++++|+.||+                           |      +|+|+|+.|
T Consensus         1 Me~~A~~k~ir~Sp~K~r~va~~IrG~~v~~Al~~L~---------------------------f------~~~kaa~~i   47 (110)
T d1i4ja_           1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILR---------------------------Y------TNKRGAYFV   47 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH---------------------------H------CCCTTHHHH
T ss_pred             CcEEEEcCccccCHHHHHHHHHHHcCCcHHHHHHHHh---------------------------c------CcchhHHHH
Confidence            6799999999999999999999999999999999999                           4      899999999


Q ss_pred             HHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeCcc
Q 029751           93 LDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE  156 (188)
Q Consensus        93 ~klL~sA~aNA~~-kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~~~  156 (188)
                      .|+|+||.+||++ +|+|+|+|||++++||+||+++   |||+||++++++++|||+|+|+|.+.
T Consensus        48 ~k~l~SA~aNA~~~~~~d~~~L~I~~~~v~~G~~~k---~rarGRa~~i~k~~sHi~vvL~e~~~  109 (110)
T d1i4ja_          48 AKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVL---PRARGRADIIKKRTSHITVILGEKHG  109 (110)
T ss_dssp             HHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEEEC---SCSSSCCCSCCEEEEEEEEEEEESSC
T ss_pred             HHHHHHHHHHHHhccCCCccceEEEEEEECCCceEC---hhhccCCCcccCCcccEEEEEeecCC
Confidence            9999999999986 7999999999999999999875   89999999999999999999999764

>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-37  Score=233.33  Aligned_cols=105  Identities=27%  Similarity=0.373  Sum_probs=101.4

Q ss_pred             EeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHHHHHH
Q 029751           17 ARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLL   96 (188)
Q Consensus        17 A~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i~klL   96 (188)
                      |..+++++||+|+++||++||||+++||+.||+                           |      +|+|+|+.|.|+|
T Consensus         1 A~~k~ir~Sp~K~r~va~~IrG~~v~~A~~~L~---------------------------f------~~kkaa~~i~k~l   47 (106)
T d2gycq1           1 AKHRHARSSAQKVRLVADLIRGKKVSQALDILT---------------------------Y------TNKKAAVLVKKVL   47 (106)
T ss_dssp             CCCCCCCCCSSSSCSSSSSSSSSCSHHHHSSSS---------------------------S------CCSSTTSSTTTSS
T ss_pred             CCcCccccCHHHHHHHHHHHcCCcHHHHHHHHc---------------------------c------CCcccchHHHHHH
Confidence            567999999999999999999999999999999                           6      8999999999999


Q ss_pred             HHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceeEEEEeeeC
Q 029751           97 KNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK  154 (188)
Q Consensus        97 ~sA~aNA~~-kglD~d~L~I~~i~vnkG~~~Kr~~pRArGRa~~~~k~~~hI~IvL~E~  154 (188)
                      +||.+||++ +|+|+|+|||+++|||+|+++||++|||+||++++++++|||+|+|+|+
T Consensus        48 ~sA~aNA~~~~~~d~~~L~I~~~~v~~G~~~KR~~~rarGRa~~i~k~~sHi~vvL~Ek  106 (106)
T d2gycq1          48 ESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR  106 (106)
T ss_dssp             SSSSTTTSTTTTCCTTTEEECCCCCCCCCBCCCBCCCTTTCCCBCCCBCCCCCCCEEEC
T ss_pred             HHHHHHHHHhcCCCHHHhEEEEEEECCCCcccCcCCcccCCCCcccCCCccEEEEEecC
Confidence            999999985 6999999999999999999999999999999999999999999999984

>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: NifU-like protein HI0377
species: Haemophilus influenzae [TaxId: 727]

Probab=84.34  E-value=1.2  Score=31.98  Aligned_cols=76  Identities=14%  Similarity=0.126  Sum_probs=57.7

Q ss_pred             eEEEeeCCCccchhHHHHHHHHHhCCCHHHHHHHHHHHhhccccccceeecCCCcchhhhccCCCCCCCCCchhhhHHHH
Q 029751           14 SCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFIL   93 (188)
Q Consensus        14 ~~kA~~~~iriS~KK~r~va~~IrG~~v~~A~~~L~~V~~kk~~VPf~ry~~~v~~~~~~~~~~~~~~Gr~pkKaa~~i~   93 (188)
                      .++..+..-.+|.-=+-.++.+|+|++++||..+-...+.+..-.                     .+  .-.+.|..-.
T Consensus        55 di~f~~~GCais~Asas~~~e~i~Gkt~~ea~~i~~~~i~e~l~~---------------------~p--~r~~Ca~L~~  111 (134)
T d1r9pa_          55 DAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELEL---------------------PP--VKVHCSILAE  111 (134)
T ss_dssp             EEEEEEESSSSHHHHHHHHHHHSSSSBHHHHTTSHHHHHHHHHTC---------------------CS--TTHHHHHHHH
T ss_pred             EEEEEeccCcccHhHHHHHHHHHHhCCHHHHHHhcchHHHHhhcC---------------------CC--chhHHHHHHH
Confidence            467778888889889999999999999999998765543332111                     11  2468888899


Q ss_pred             HHHHHHHHHHHH-cCCCCCC
Q 029751           94 DLLKNAESNAEV-KGLDVDA  112 (188)
Q Consensus        94 klL~sA~aNA~~-kglD~d~  112 (188)
                      +.|+.|.++.+. +|++..+
T Consensus       112 ~al~~al~~y~~k~g~~~~~  131 (134)
T d1r9pa_         112 DAIKAAIADYKAKQGLEHHH  131 (134)
T ss_dssp             HHHHHHHHHHHHTTTCCCSC
T ss_pred             HHHHHHHHHHHHhcCCchhh
Confidence            999999999987 5887653