Citrus Sinensis ID: 029777

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MQALSLLLFQVLELSAALFLLSrtikpeydlvNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLfgakaannpLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLgssycwsgnlISSIAIHSLYNASILMIIFLS
Flexible Loop (DISEMBL)
MQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Low Complexity Region (SEG)
MqalslllfqvlelsaalFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Disordered region (IsUnstruct)
***LSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFL*
Disordered Region (DISOPRED)
MQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAA*******ILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Disordered Region (DISEMBL)
MQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Disordered Region (DISPRO)
MQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Transmembrane Helix (TMHMM)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
A6H7A0	308	CAAX prenyl protease 2 OS	yes	no	0.425	0.259	0.382	0.0004

>sp|A6H7A0|FACE2_BOVIN CAAX prenyl protease 2 OS=Bos taurus GN=RCE1 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 98  LVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVL 157
           L N +IAPL EE V+R  +L  LA       AV      F VAHF    F QL      +
Sbjct: 165 LRNQVIAPLTEELVFRACMLPMLAPCTGLGPAVFTCPLFFGVAHFH-HIFEQLRFRQSSV 223

Query: 158 GSSYCWSGNLISSIAIHSLYN 178
           GS +  +G+LI  +  HS  N
Sbjct: 224 GSIFLSAGHLIGPVLCHSFCN 244

Proteolytically removes the C-terminal three residues of farnesylated and geranylated proteins. Seems to be able to process K-Ras, N-Ras, H-Ras, RAP1B and G-gamma-1.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
356517514	301	PREDICTED: uncharacterized protein LOC10	0.984	0.614	0.621	8e-59
255637706	301	unknown [Glycine max]	0.984	0.614	0.616	1e-57
255553791	292	prenyl-dependent CAAX protease, putative	0.994	0.640	0.614	5e-57
224127051	235	predicted protein [Populus trichocarpa]	0.973	0.778	0.661	1e-56
225446329	298	PREDICTED: uncharacterized protein LOC10	0.989	0.624	0.641	3e-53
302143276	388	unnamed protein product [Vitis vinifera]	0.968	0.469	0.644	2e-52
449503235	279	PREDICTED: uncharacterized protein LOC10	0.994	0.670	0.561	2e-47
449443851	300	PREDICTED: uncharacterized protein LOC10	0.994	0.623	0.561	2e-47
297836838	300	CAAX amino terminal protease family prot	0.968	0.606	0.513	2e-46
18399457	301	CAAX amino terminal protease family prot	0.968	0.604	0.486	1e-43

>gi|356517514|ref|XP_003527432.1| PREDICTED: uncharacterized protein LOC100806529 isoform 1 [Glycine max]

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 115/185 (62%), Positives = 140/185 (75%)

Query: 2   QALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLV 61
           +ALSLL  Q+LE   AL LL  T KP+Y   NF +  K  + RNW L+SA+GF  L  L+
Sbjct: 115 EALSLLTIQILEFGGALVLLKYTAKPQYKFSNFSRKNKLLSNRNWFLSSAVGFGFLVLLI 174

Query: 62  FLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLA 121
           FL SL+ADRLFG+K  NNP+++++LL+SDIS  + VL  CI+ PLLEE VYRGFLLTSL+
Sbjct: 175 FLTSLLADRLFGSKPVNNPILKDMLLNSDISRLSCVLAYCIVTPLLEEVVYRGFLLTSLS 234

Query: 122 STMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASI 181
           ST+ W+ AV ISS +FS  HFS +NFLQLFIIGCVLG SYCWSGNL SSIAIHSLYNA  
Sbjct: 235 STLEWQQAVAISSVVFSAIHFSGENFLQLFIIGCVLGCSYCWSGNLSSSIAIHSLYNALT 294

Query: 182 LMIIF 186
           L+I +
Sbjct: 295 LVITY 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637706|gb|ACU19176.1| unknown [Glycine max]

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/185 (61%), Positives = 138/185 (74%)

Query: 2   QALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLV 61
           +ALSLL  Q+LE   AL LL    KP+Y   NF +  K  + RNW L+SA+GF  L  L+
Sbjct: 115 EALSLLTIQILEFGGALVLLEYIAKPQYKFSNFSRKNKLLSNRNWFLSSAVGFGFLVLLI 174

Query: 62  FLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLA 121
           FL SL+ADRLFG+K  NNP+++++LL+SDIS  + VL  CI+ PLLEE VYRGFLLTSL 
Sbjct: 175 FLTSLLADRLFGSKPVNNPILKDMLLNSDISRLSCVLAYCIVTPLLEEVVYRGFLLTSLF 234

Query: 122 STMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASI 181
           ST+ W+ AV ISS +FS  HFS +NFLQLFIIGCVLG SYCWSGNL SSIAIHSLYNA  
Sbjct: 235 STLEWQQAVAISSVVFSAIHFSGENFLQLFIIGCVLGCSYCWSGNLSSSIAIHSLYNALT 294

Query: 182 LMIIF 186
           L+I +
Sbjct: 295 LVITY 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553791|ref|XP_002517936.1| prenyl-dependent CAAX protease, putative [Ricinus communis] gi|223542918|gb|EEF44454.1| prenyl-dependent CAAX protease, putative [Ricinus communis]

 Score =  225 bits (574), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 141/187 (75%)

Query: 2   QALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLV 61
           + LSLL+ Q+LEL   L LL  T KPE  L +FFK+ + P ERNW+LAS LGF  LT LV
Sbjct: 106 EVLSLLVIQILELIGVLVLLRFTGKPENKLSSFFKSYELPKERNWVLASLLGFGSLTLLV 165

Query: 62  FLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLA 121
           FL S +AD    AK  +NP+++EILLSS++S TA VLV C + PL+EE VYRGFLLTSL 
Sbjct: 166 FLTSFLADVFIEAKDVSNPILKEILLSSNVSKTACVLVYCFVTPLMEEIVYRGFLLTSLT 225

Query: 122 STMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASI 181
           STM+W+ AV +SS +FS AHFS +NFLQLF+IG VLG  YCW+GNL SSIA+HSLYNA  
Sbjct: 226 STMNWQKAVFLSSMVFSAAHFSGENFLQLFVIGIVLGCCYCWTGNLSSSIAVHSLYNAMT 285

Query: 182 LMIIFLS 188
           L+I F+S
Sbjct: 286 LIITFVS 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127051|ref|XP_002329373.1| predicted protein [Populus trichocarpa] gi|222870423|gb|EEF07554.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/183 (66%), Positives = 144/183 (78%)

Query: 2   QALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLV 61
           + LSLL  Q+LEL+A+L LL  T KPEY++V+FFKT +   +RNWL AS+LGF  L  LV
Sbjct: 52  EVLSLLAIQILELAASLLLLKSTAKPEYEVVSFFKTDELSKKRNWLQASSLGFGFLVLLV 111

Query: 62  FLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLA 121
           FL SLVADRL G KA NNP+V+EILLSS IS  A +LV C++ PLLEE VYRGFLL SLA
Sbjct: 112 FLTSLVADRLIGPKAVNNPIVKEILLSSSISKVACILVYCLVTPLLEEIVYRGFLLKSLA 171

Query: 122 STMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASI 181
           STM+W+ AV++SSA+FS AHFS +NF+QLFIIGCVLG SY WSGNL S I  HSLYNA  
Sbjct: 172 STMNWQQAVLLSSAVFSAAHFSGENFIQLFIIGCVLGCSYSWSGNLCSPILTHSLYNALT 231

Query: 182 LMI 184
           L+I
Sbjct: 232 LII 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446329|ref|XP_002273804.1| PREDICTED: uncharacterized protein LOC100265959 [Vitis vinifera]

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 120/187 (64%), Positives = 140/187 (74%), Gaps = 1/187 (0%)

Query: 2   QALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLV 61
           +ALS+L  Q LEL  AL LL+ T KP Y   + F+  +    RNWLLASA+GF  L  LV
Sbjct: 113 EALSILTLQTLELIGALLLLNYTAKPGYRF-SVFRGDQLSTRRNWLLASAIGFGFLVLLV 171

Query: 62  FLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLA 121
           FL SLVAD L G KA NNP+++EILLSS++S  A +LV CI+ PLLEE VYRGFLLTSLA
Sbjct: 172 FLTSLVADILIGPKAVNNPILKEILLSSNVSEIACILVYCIVTPLLEETVYRGFLLTSLA 231

Query: 122 STMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASI 181
           STM W+ AV+I+SAIFS AHFS +N LQLFIIGCVLG SYCW+G+L SSI IHSLYNA  
Sbjct: 232 STMKWQQAVIITSAIFSAAHFSGENSLQLFIIGCVLGCSYCWTGSLSSSIVIHSLYNALT 291

Query: 182 LMIIFLS 188
           L I  LS
Sbjct: 292 LTITLLS 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143276|emb|CBI21837.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/183 (64%), Positives = 138/183 (75%), Gaps = 1/183 (0%)

Query: 2   QALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLV 61
           +ALS+L  Q LEL  AL LL+ T KP Y   + F+  +    RNWLLASA+GF  L  LV
Sbjct: 113 EALSILTLQTLELIGALLLLNYTAKPGYRF-SVFRGDQLSTRRNWLLASAIGFGFLVLLV 171

Query: 62  FLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLA 121
           FL SLVAD L G KA NNP+++EILLSS++S  A +LV CI+ PLLEE VYRGFLLTSLA
Sbjct: 172 FLTSLVADILIGPKAVNNPILKEILLSSNVSEIACILVYCIVTPLLEETVYRGFLLTSLA 231

Query: 122 STMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASI 181
           STM W+ AV+I+SAIFS AHFS +N LQLFIIGCVLG SYCW+G+L SSI IHSLYNA  
Sbjct: 232 STMKWQQAVIITSAIFSAAHFSGENSLQLFIIGCVLGCSYCWTGSLSSSIVIHSLYNALT 291

Query: 182 LMI 184
           L I
Sbjct: 292 LTI 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503235|ref|XP_004161901.1| PREDICTED: uncharacterized protein LOC101228787 [Cucumis sativus]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/187 (56%), Positives = 131/187 (70%)

Query: 2   QALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLV 61
           +ALS L  Q LE    L LL  T KP Y    FF+  +   +RNW+ ASA G   L SLV
Sbjct: 93  KALSRLAIQTLEFILTLLLLKLTAKPNYRFRYFFRDNELCNKRNWIFASAFGVGFLFSLV 152

Query: 62  FLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLA 121
           FL SL+A+ + G KA +N +++EIL  S+IS TA  +  C++ PLLEE VYRGFLL S++
Sbjct: 153 FLTSLLAESVIGPKAVSNLVLKEILDCSNISRTACFIAYCVVTPLLEETVYRGFLLASIS 212

Query: 122 STMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASI 181
           S M W+ AVVISSA+FS AH S++N LQLFIIGCVLG SYCW+GNL SSI IHSLYNA  
Sbjct: 213 SEMQWQQAVVISSAVFSAAHLSVENSLQLFIIGCVLGCSYCWTGNLRSSILIHSLYNAMS 272

Query: 182 LMIIFLS 188
           L++ +LS
Sbjct: 273 LLLTYLS 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443851|ref|XP_004139689.1| PREDICTED: uncharacterized protein LOC101217192 [Cucumis sativus]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/187 (56%), Positives = 131/187 (70%)

Query: 2   QALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLV 61
           +ALS L  Q LE    L LL  T KP Y    FF+  +   +RNW+ ASA G   L SLV
Sbjct: 114 KALSRLAIQTLEFILTLLLLKLTAKPNYRFRYFFRDNELCNKRNWIFASAFGVGFLFSLV 173

Query: 62  FLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLA 121
           FL SL+A+ + G KA +N +++EIL  S+IS TA  +  C++ PLLEE VYRGFLL S++
Sbjct: 174 FLTSLLAESVIGPKAVSNLVLKEILDCSNISRTACFIAYCVVTPLLEETVYRGFLLASIS 233

Query: 122 STMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASI 181
           S M W+ AVVISSA+FS AH S++N LQLFIIGCVLG SYCW+GNL SSI IHSLYNA  
Sbjct: 234 SEMQWQQAVVISSAVFSAAHLSVENSLQLFIIGCVLGCSYCWTGNLRSSILIHSLYNAMS 293

Query: 182 LMIIFLS 188
           L++ +LS
Sbjct: 294 LLLTYLS 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836838|ref|XP_002886301.1| CAAX amino terminal protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297332141|gb|EFH62560.1| CAAX amino terminal protease family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 129/183 (70%), Gaps = 1/183 (0%)

Query: 2   QALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFK-TIKSPAERNWLLASALGFAVLTSL 60
           Q LSL++ Q++ELS  + LL  T KP+   +NF K   +S  ERNW++ SALG   L   
Sbjct: 117 QVLSLVVLQMVELSGTVLLLRTTAKPQCKSINFLKGNNESREERNWVVGSALGLGCLVGF 176

Query: 61  VFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSL 120
           +F+ SLVAD+LFG+KA +   + +IL+S +++ +    + C++AP+LEE VYR FLLTSL
Sbjct: 177 IFVTSLVADQLFGSKAVHESELEKILVSGEVARSGCFALYCVVAPILEEIVYRRFLLTSL 236

Query: 121 ASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNAS 180
           AS M W  A+VISS +F+ AHFS  +F+QLF IGCV+GS Y WSGNL SS+ +HSLYNA 
Sbjct: 237 ASRMEWWKALVISSGVFAAAHFSGQDFVQLFGIGCVIGSCYIWSGNLASSVLVHSLYNAL 296

Query: 181 ILM 183
            L+
Sbjct: 297 TLL 299

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399457|ref|NP_565483.1| CAAX amino terminal protease family protein [Arabidopsis thaliana] gi|13878021|gb|AAK44088.1|AF370273_1 unknown protein [Arabidopsis thaliana] gi|17104585|gb|AAL34181.1| unknown protein [Arabidopsis thaliana] gi|20197698|gb|AAM15211.1| predicted protein [Arabidopsis thaliana] gi|26450643|dbj|BAC42433.1| unknown protein [Arabidopsis thaliana] gi|330251968|gb|AEC07062.1| CAAX amino terminal protease family protein [Arabidopsis thaliana]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 124/183 (67%), Gaps = 1/183 (0%)

Query: 2   QALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAE-RNWLLASALGFAVLTSL 60
           Q LSL++ Q++EL+  + LL  T KP+   +NF K      E RNW++ SALG   L   
Sbjct: 117 QVLSLVVLQMVELAGTVLLLRTTAKPQCKSINFLKGNNETREGRNWVVGSALGLGCLVGF 176

Query: 61  VFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSL 120
           +F+ SLVAD+LFG KA +   + +I++S +++ +    + C++AP+LEE VYR FLLTSL
Sbjct: 177 IFVTSLVADQLFGPKAVHESELEKIMVSGEVARSGCFALYCVVAPILEEIVYRRFLLTSL 236

Query: 121 ASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNAS 180
           AS M W  A+VISS +F+  HFS ++F+QLF IGC LG  Y WSGNL SS+ +HSLYNA 
Sbjct: 237 ASRMEWWKALVISSGVFAAGHFSGEDFVQLFGIGCGLGLCYSWSGNLASSVLVHSLYNAL 296

Query: 181 ILM 183
            L+
Sbjct: 297 TLL 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2827507	301	AT2G20725 "AT2G20725" [Arabido	0.872	0.544	0.496	3.7e-39
TAIR|locus:2012487	353	AT1G14270 [Arabidopsis thalian	0.882	0.470	0.337	1e-20
TAIR|locus:2175836	347	AT5G60750 "AT5G60750" [Arabido	0.734	0.397	0.340	6.8e-14
TIGR_CMR|BA_1378	337	BA_1378 "transcriptional regul	0.484	0.270	0.336	6.3e-11
UNIPROTKB|Q71XU3	228	LMOf2365_2102 "CAAX amino term	0.819	0.675	0.245	9.1e-10
GENEDB_PFALCIPARUM|PFI0660c	432	PFI0660c "protease, putative"	0.542	0.236	0.300	1.4e-09
UNIPROTKB|Q8I317	432	PFI0660c "Protease, putative"	0.542	0.236	0.300	1.4e-09
UNIPROTKB|Q81TY1	284	BAS1041 "CAAX amino terminal p	0.547	0.362	0.320	1.1e-08
TIGR_CMR|BA_1120	284	BA_1120 "CAAX amino terminal p	0.547	0.362	0.320	1.1e-08
UNIPROTKB|Q81V64	228	BAS0603 "CAAX amino terminal p	0.734	0.605	0.248	3.3e-08

TAIR|locus:2827507 AT2G20725 "AT2G20725" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 82/165 (49%), Positives = 111/165 (67%)

Query:    20 LLSRTIKPEYDLVNFFKTIKSPAE-RNWLLASALGFAVLTSLVFLASLVADRLFGAKAAN 78
             LL  T KP+   +NF K      E RNW++ SALG   L   +F+ SLVAD+LFG KA +
Sbjct:   135 LLRTTAKPQCKSINFLKGNNETREGRNWVVGSALGLGCLVGFIFVTSLVADQLFGPKAVH 194

Query:    79 NPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFS 138
                + +I++S +++ +    + C++AP+LEE VYR FLLTSLAS M W  A+VISS +F+
Sbjct:   195 ESELEKIMVSGEVARSGCFALYCVVAPILEEIVYRRFLLTSLASRMEWWKALVISSGVFA 254

Query:   139 VAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILM 183
               HFS ++F+QLF IGC LG  Y WSGNL SS+ +HSLYNA  L+
Sbjct:   255 AGHFSGEDFVQLFGIGCGLGLCYSWSGNLASSVLVHSLYNALTLL 299

GO:0003674 "molecular_function" evidence=ND

GO:0006508 "proteolysis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2012487 AT1G14270 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 60/178 (33%), Positives = 104/178 (58%)

Query:    19 FLLSRTIKP-EYDLVNFFKTIKSPA--ERNWLLASALGFAVLTSLVFLASLVADRLFGAK 75
             F +++T  P   D++ +   ++ P   ++ WL+   +G       + L  +V   +F  +
Sbjct:   165 FTVAKTFDPLPEDILRY--DLRQPVNLQKGWLVWGGIGLVGAVGAIALTGVVLS-VFRTE 221

Query:    76 AAN---NPLVREILL--SSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAV 130
             A     + L++ + L  SS+IS  ++V +  I+APLLEE V+RGF + SL   +    A+
Sbjct:   222 APEREVDSLMKLLPLIGSSNISTLSLVGITGILAPLLEETVFRGFFMVSLTKWVPTPIAI 281

Query:   131 VISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMII-FL 187
             +ISSA F++AHF+   F QLFI+G VLG SY  + NLI+ + IH  +N+ +++++ FL
Sbjct:   282 IISSAAFALAHFTPGEFPQLFILGSVLGLSYAQTRNLITPMVIHGFWNSGVILLLTFL 339

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TAIR|locus:2175836 AT5G60750 "AT5G60750" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 6.8e-14, P = 6.8e-14
 Identities = 49/144 (34%), Positives = 79/144 (54%)

Query:    45 NWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPL----VREILLSSDISATAI-VLV 99
             NW L   +G  +   +  L+ L  + L      ++P+    V + +++ D  A A+  +V
Sbjct:   201 NWQLDVIIGCFMFPFVNRLSQLNLN-LLPLPPTSSPVSLSSVEQSIMARDPVAMALYAVV 259

Query:   100 NCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGS 159
               I AP+ EE V+RGFLL SL   M    A+++SS  F++AHF++   L L  +G VLG 
Sbjct:   260 VSICAPVWEEIVFRGFLLPSLTRYMPVWCAILVSSIAFALAHFNVQRMLPLVFLGVVLGL 319

Query:   160 SYCWSGNLISSIAIHSLYNASILM 183
              +  S NL+ S+ +HSL+N  + M
Sbjct:   320 IFARSRNLLPSMLLHSLWNGFVFM 343

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TIGR_CMR|BA_1378 BA_1378 "transcriptional regulator, AbrB family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 157 (60.3 bits), Expect = 6.3e-11, P = 6.3e-11
 Identities = 32/95 (33%), Positives = 58/95 (61%)

Query:    85 ILLSSDISATAIVLVN-CIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFS 143
             ++ +S+I  T    ++ C++AP++EE ++RGF L  +A     + AV+ISS IF + HF 
Sbjct:   120 VINTSNIYMTIFTFISACVLAPIMEEVIFRGFFLQRMAYKWGIKKAVIISSLIFGLGHFD 179

Query:   144 IDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYN 178
             +   +  F+ G V+   Y  + N+ ++IA+H+L N
Sbjct:   180 V---IGAFMFGVVMCLLYIKTKNIWTNIAVHALNN 211

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|Q71XU3 LMOf2365_2102 "CAAX amino terminal protease family protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 141 (54.7 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 39/159 (24%), Positives = 73/159 (45%)

Query:    26 KPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREI 85
             KP+ + +   +  K      W++   +G  V      + S++   + G    +N    E+
Sbjct:    68 KPKENKIEIGEKTKPLLSIVWIVGGVIGLYVAQ---IICSVIITMISGE--LSNSANTEL 122

Query:    86 LLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSID 145
             L+    +A   ++   I+ P+LEE V+R  +   L++  +   A VISS  F + H  I 
Sbjct:   123 LVDLTKAAPIFLIFISILGPILEELVFRKVIFGGLSNVTNIHVAAVISSLFFGLLHGDIS 182

Query:   146 NFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMI 184
               L  F+IG +L   Y  +  ++ S+  H L N  +L++
Sbjct:   183 FLLTYFVIGLILCFLYTKTKRIVVSMGAHILMNTIVLLL 221

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GENEDB_PFALCIPARUM|PFI0660c PFI0660c "protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 147 (56.8 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/103 (30%), Positives = 56/103 (54%)

Query:    82 VREILLSSDISATAIVLVN-CIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVA 140
             + EI+   +  +T + +++ C  AP  EE +YR F+L SL   M+   AV  SS  F++ 
Sbjct:   325 IDEIVHEKEFFSTFLCIISPCFSAPFFEEFIYRFFVLKSLNLFMNINYAVTFSSLFFAIH 384

Query:   141 HFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILM 183
             H +I N + LF +       Y ++ N++ ++ IHS +N  + +
Sbjct:   385 HLNIFNLIPLFFLSFFWSYIYIYTDNILVTMLIHSFWNIYVFL 427

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8I317 PFI0660c "Protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 147 (56.8 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/103 (30%), Positives = 56/103 (54%)

Query:    82 VREILLSSDISATAIVLVN-CIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVA 140
             + EI+   +  +T + +++ C  AP  EE +YR F+L SL   M+   AV  SS  F++ 
Sbjct:   325 IDEIVHEKEFFSTFLCIISPCFSAPFFEEFIYRFFVLKSLNLFMNINYAVTFSSLFFAIH 384

Query:   141 HFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILM 183
             H +I N + LF +       Y ++ N++ ++ IHS +N  + +
Sbjct:   385 HLNIFNLIPLFFLSFFWSYIYIYTDNILVTMLIHSFWNIYVFL 427

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q81TY1 BAS1041 "CAAX amino terminal protease family protein" [Bacillus anthracis (taxid:1392)]

 Score = 135 (52.6 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 34/106 (32%), Positives = 58/106 (54%)

Query:    82 VREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAH 141
             +RE ++ S       V++   IAP++ E V+RGFLL   A+      A+++ + +F++ H
Sbjct:   117 LREPIIDSTGGYVYQVIMVVFIAPIIGEFVFRGFLLQRFAAKWGTSIAIIVVAILFALLH 176

Query:   142 FSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFL 187
               +D FL   +   VL   Y  + +L+  IAIH L NA ++ + FL
Sbjct:   177 --VD-FLGAVVFSVVLSIVYIRTNSLLMPIAIHMLNNAFVISLSFL 219

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_1120 BA_1120 "CAAX amino terminal protease family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 135 (52.6 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 34/106 (32%), Positives = 58/106 (54%)

Query:    82 VREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAH 141
             +RE ++ S       V++   IAP++ E V+RGFLL   A+      A+++ + +F++ H
Sbjct:   117 LREPIIDSTGGYVYQVIMVVFIAPIIGEFVFRGFLLQRFAAKWGTSIAIIVVAILFALLH 176

Query:   142 FSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFL 187
               +D FL   +   VL   Y  + +L+  IAIH L NA ++ + FL
Sbjct:   177 --VD-FLGAVVFSVVLSIVYIRTNSLLMPIAIHMLNNAFVISLSFL 219

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81V64 BAS0603 "CAAX amino terminal protease family protein" [Bacillus anthracis (taxid:1392)]

 Score = 128 (50.1 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 36/145 (24%), Positives = 73/145 (50%)

Query:    46 WLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNC-IIA 104
             W + + + F ++ S+  L  ++ +++ G    N+     +     I +  I ++   II+
Sbjct:    88 WTVGAVI-FLIVASIAVL--VIMEKM-GISFENSK-TETVQNDKSIYSFCIAVIGAAIIS 142

Query:   105 PLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQL-FIIGCVLGSSYCW 163
             P+ EE +YRG   T   +     + + ISS IF+V H    N L + F+ G V    Y  
Sbjct:   143 PIYEEILYRGVFYTFFRNRYGIWSGMFISSIIFTVVHIPTYNTLPVNFLSGVVFAWLYEK 202

Query:   164 SGNLISSIAIHSLYNASILMIIFLS 188
             + +++S++  H+L+N   +++ F+S
Sbjct:   203 TNSILSAMIAHALFNFIAVLLTFMS 227

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.120.118.1 hypothetical protein (235 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
pfam02517	93	pfam02517, Abi, CAAX protease self-immunity	1e-13
COG1266	226	COG1266, COG1266, Predicted metal-dependent membra	9e-05

>gnl|CDD|217080 pfam02517, Abi, CAAX protease self-immunity

 Score = 63.3 bits (155), Expect = 1e-13
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 91  ISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHF--SIDNFL 148
           +    ++L+  ++AP+ EE ++RGFLL  L        A++ISS +F + H       FL
Sbjct: 2   LLLLLLLLLLALLAPIGEELLFRGFLLPRLRKRFWPLLAILISSLLFGLLHLPNGPLAFL 61

Query: 149 QLFIIGCVLGSSYCWSGNLISSIAIHSLYNA 179
             F++G VLG  Y  +G+L ++I +H+L N 
Sbjct: 62  SAFLLGLVLGWLYLRTGSLWAAILLHALNNL 92

Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity. Length = 93

>gnl|CDD|224185 COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 6/176 (3%)

Query: 16  AALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAK 75
             + LL          +  F  +     +  L    L    L  +  L SL    L    
Sbjct: 47  LLVLLLLALFLIALAFLLGFLKLLGLLRKGGLAWILLLLLGLLLIPLLFSLFLSLLSVGL 106

Query: 76  AANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSA 135
             N   +  +L  + +      LV  I+APL EE ++RG+LL +LA       A++ISS 
Sbjct: 107 LLN--QLPLLLTLAVLWLLLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSL 164

Query: 136 IFSVAHFSIDNFLQL----FIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFL 187
           +F++ H      L      FI G +LG  Y  +G+L   I +H+L N   L+ + L
Sbjct: 165 LFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSLWVPILLHALINLLALLFLSL 220

Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
TIGR03008	222	pepcterm_CAAX CAAX prenyl protease-related protein	99.87
PF02517	91	Abi: CAAX protease self-immunity; InterPro: IPR003	99.84
COG1266	226	Predicted metal-dependent membrane protease [Gener	99.78
KOG4130	291	consensus Prenyl protein protease [Posttranslation	99.11
COG4449	827	Predicted protease of the Abi (CAAX) family [Gener	96.62
PF10086	223	DUF2324: Putative membrane peptidase family (DUF23	95.34
PF13367	191	PrsW-protease: Protease prsW family	91.85
COG4377	258	Predicted membrane protein [Function unknown]	91.31

>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein

Probab=99.87  E-value=5.7e-20  Score=142.24  Aligned_cols=137  Identities=19%  Similarity=0.289  Sum_probs=94.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChH-HHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029777           43 ERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNP-LVREILLSSDIS-ATAIVLVNCIIAPLLEEAVYRGFLLTSL  120 (188)
Q Consensus        43 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~p~~EEl~fRg~l~~~l  120 (188)
                      .+++..+...|+++..+.. ..+...... +.+...++ ...+.. .+++. ....++..+++.|+.||++|||++++++
T Consensus        67 ~~~~l~gi~~Gv~~f~lwi-~~~~~~~~~-~~~~~~~~~~i~~~~-~~~~~l~~~~l~~~~l~vpi~EElfFRG~l~~~l  143 (222)
T TIGR03008        67 PRHLLFSAAVGVAVFVLWV-NLDWLLPFQ-GEPAGFDPSQIGNAG-LTRWVLIAFRLAGATLVVPVMEELFWRSFLLRYL  143 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHhhc-CCccccchhhhhccc-chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            5678888888886665442 223333322 22222222 112111 11111 1223466678899999999999999999


Q ss_pred             Hhh-c-------ChHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHH
Q 029777          121 AST-M-------SWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMII  185 (188)
Q Consensus       121 ~~~-~-------~~~~ail~ssllF~l~H~~~~~~~~~~~~g~~~~~~y~~t~~i~~~i~~H~~~n~~~~i~~  185 (188)
                      .++ .       ..+.+.++||++|++.|..   ....++.|+++|++|.||||++.++++|+++|...-..+
T Consensus       144 ~~~~f~~~~~~~~~~~a~lisSllFal~H~~---~~~~~l~Gli~~~l~~~tgsL~~~I~~H~~~N~ll~~~v  213 (222)
T TIGR03008       144 QQSDFESVPGGRFHWPSFLAVTLLFGLEHHL---IVAGLIAGLAYNLLLLRTGSIMACILAHAVTNGLLGLWV  213 (222)
T ss_pred             HHhcccccccccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            753 1       2467999999999999974   556778899999999999999999999999999865543

The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.

>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases)

Probab=99.84  E-value=2.8e-20  Score=125.44  Aligned_cols=88  Identities=33%  Similarity=0.556  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHhhCCchHHH
Q 029777           93 ATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSI-DNFLQLFIIGCVLGSSYCWSGNLISSI  171 (188)
Q Consensus        93 ~~~~~~~~~~~~p~~EEl~fRg~l~~~l~~~~~~~~ail~ssllF~l~H~~~-~~~~~~~~~g~~~~~~y~~t~~i~~~i  171 (188)
                      .+...+...+.+|+.||++|||++++.++++.++..+.++|+++|++.|.+. ..+...++.|+.++++|.||||+|+++
T Consensus         3 ~~~~~~~~~~~~~~~EEl~fRg~l~~~l~~~~~~~~a~~is~~~f~~~H~~~~~~~~~~~~~g~~~~~~~~~t~sl~~~i   82 (91)
T PF02517_consen    3 FLIFFLVMILIAPIAEELFFRGFLFNRLRRRFNPWFAILISSLLFALWHLPNGPQFIYAFLFGLLFGYLYLRTGSLWAAI   82 (91)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            3455678889999999999999999999999888999999999999999975 448888999999999999999999999


Q ss_pred             HHHHHHHHH
Q 029777          172 AIHSLYNAS  180 (188)
Q Consensus       172 ~~H~~~n~~  180 (188)
                      ++|+.+|.+
T Consensus        83 ~~H~~~n~~   91 (91)
T PF02517_consen   83 IAHALWNLV   91 (91)
T ss_pred             HHHHHHHcC
Confidence            999999963

The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane

>COG1266 Predicted metal-dependent membrane protease [General function prediction only]

Probab=99.78  E-value=1e-16  Score=124.20  Aligned_cols=88  Identities=39%  Similarity=0.558  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhhhch----hHHHHHHHHHHHHHHHHHhhCCc
Q 029777           92 SATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSI----DNFLQLFIIGCVLGSSYCWSGNL  167 (188)
Q Consensus        92 ~~~~~~~~~~~~~p~~EEl~fRg~l~~~l~~~~~~~~ail~ssllF~l~H~~~----~~~~~~~~~g~~~~~~y~~t~~i  167 (188)
                      ......+...+.+|+.||++|||++++++.++.+.+.+.++||++|++.|.+.    .....++..|+.+++.|.||||+
T Consensus       121 ~~~~~~~~~~i~~~l~EEl~fRg~l~~~l~~~~~~~~a~iissllFal~H~~~~~~~~~~~~~~~~gli~~~~~~~t~~l  200 (226)
T COG1266         121 WLLLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSL  200 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            35566788889999999999999999999999999999999999999999964    56778889999999999999999


Q ss_pred             hHHHHHHHHHHH
Q 029777          168 ISSIAIHSLYNA  179 (188)
Q Consensus       168 ~~~i~~H~~~n~  179 (188)
                      |.++..|..+|.
T Consensus       201 ~~~i~~H~~~N~  212 (226)
T COG1266         201 WVPILLHALINL  212 (226)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999995

>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=3.8e-10  Score=86.80  Aligned_cols=86  Identities=29%  Similarity=0.345  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHhhhch--------------------hHHHHHHHHHH
Q 029777           97 VLVNCIIAPLLEEAVYRGFLLTSLAST-MSWRNAVVISSAIFSVAHFSI--------------------DNFLQLFIIGC  155 (188)
Q Consensus        97 ~~~~~~~~p~~EEl~fRg~l~~~l~~~-~~~~~ail~ssllF~l~H~~~--------------------~~~~~~~~~g~  155 (188)
                      .+-..+++|+.||+.||..+++....- .+...++..+.++||+.|...                    -++.++.+.|-
T Consensus       131 ~~RN~iiaPLtEElvfracmlp~~l~~~~s~l~avF~~PLfFGvAH~HHiyEqL~~g~~~~~~ilL~t~fQfsYTtlFG~  210 (291)
T KOG4130|consen  131 WFRNFIIAPLTEELVFRACMLPTYLNLIQSSLQAVFWQPLFFGVAHAHHIYEQLQEGSMTTVSILLTTCFQFSYTTLFGG  210 (291)
T ss_pred             HHHhhhhccchHHHHHHHHHHHHHHHhhhcchhhHHHhhHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            466789999999999999999988875 778889999999999999842                    13566778888


Q ss_pred             HHHHHHHhhCCchHHHHHHHHHHHHHH
Q 029777          156 VLGSSYCWSGNLISSIAIHSLYNASIL  182 (188)
Q Consensus       156 ~~~~~y~~t~~i~~~i~~H~~~n~~~~  182 (188)
                      --+.++.|||++|.+++.|+.+|..++
T Consensus       211 yTaflF~rTghl~~~iLvHAfCN~MGf  237 (291)
T KOG4130|consen  211 YTAFLFVRTGHLWCPILVHAFCNIMGF  237 (291)
T ss_pred             HHHHHhhhcCCchHHHHHHHHHhhcCC
Confidence            888899999999999999999998654

>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]

Probab=96.62  E-value=0.0012  Score=56.32  Aligned_cols=81  Identities=21%  Similarity=0.191  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHH--HHHHHhhhch--------------h-HHHHHHHHHHHHHH
Q 029777           97 VLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISS--AIFSVAHFSI--------------D-NFLQLFIIGCVLGS  159 (188)
Q Consensus        97 ~~~~~~~~p~~EEl~fRg~l~~~l~~~~~~~~ail~ss--llF~l~H~~~--------------~-~~~~~~~~g~~~~~  159 (188)
                      ++-+.++.+++||+.||-.+.+.=.+...+|..+-...  ++|.++|--.              + ....+.+.|+--+.
T Consensus       712 iL~vIl~PAl~EElvFRvvLlP~P~E~r~~W~tl~a~~~l~LfvLyHplnA~T~y~rg~PvFf~PiFL~ltglLGL~Ctv  791 (827)
T COG4449         712 ILTVILIPALGEELVFRVVLLPGPGEGRRPWVTLGAATGLVLFVLYHPLNALTFYPRGAPVFFRPIFLLLTGLLGLGCTV  791 (827)
T ss_pred             hhhheehhhccccceeEEEecCCCCccccchHhHHHHHHHHHHHHhhhhhhhhccccCCcceeccHHHHHHHHHhhhhhh
Confidence            35556677789999999999987666545555444333  3899999732              1 12334466776777


Q ss_pred             HHHhhCCchHHHHHHHHH
Q 029777          160 SYCWSGNLISSIAIHSLY  177 (188)
Q Consensus       160 ~y~~t~~i~~~i~~H~~~  177 (188)
                      .|.-|+|+|+.+.+|...
T Consensus       792 ty~vT~SlW~iV~lHW~v  809 (827)
T COG4449         792 TYRVTGSLWPIVLLHWAV  809 (827)
T ss_pred             hHHhccchHHHHHHHHHH
Confidence            788899999999999764

>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.34  E-value=1  Score=35.21  Aligned_cols=46  Identities=15%  Similarity=0.107  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhhh
Q 029777           93 ATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHF  142 (188)
Q Consensus        93 ~~~~~~~~~~~~p~~EEl~fRg~l~~~l~~~~~~~~ail~ssllF~l~H~  142 (188)
                      .....++..+.+++.||. -|-..++.+.++.+....   .++.||+.|.
T Consensus        60 ~~l~~ly~~l~AGiFEE~-gR~i~~k~l~kk~~~~~~---~al~~GlGhG  105 (223)
T PF10086_consen   60 PILYALYGGLMAGIFEET-GRYIGFKYLLKKRRDWSD---DALAYGLGHG  105 (223)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccchhh---HHHHHHcchH
Confidence            455668889999999995 355555555544332221   3455555554

However, they are predicted to be integral membrane proteins (with several transmembrane segments).

>PF13367 PrsW-protease: Protease prsW family

Probab=91.85  E-value=4.4  Score=30.56  Aligned_cols=37  Identities=22%  Similarity=0.283  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHhh---------CCchHHHHHHHHHHHHHHH
Q 029777          147 FLQLFIIGCVLGSSYCWS---------GNLISSIAIHSLYNASILM  183 (188)
Q Consensus       147 ~~~~~~~g~~~~~~y~~t---------~~i~~~i~~H~~~n~~~~i  183 (188)
                      ...+.+.|..+++...++         .-...++..|+++|.....
T Consensus       129 ~~~t~i~g~~l~~~~~~~~~~~~~~~~~~~~~a~~lH~~~N~~~~~  174 (191)
T PF13367_consen  129 ALFTAIFGYGLGLAKRRRKRGFRLALLLGFLLAVLLHGLWNFPLSL  174 (191)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            344556666666655322         2356789999999998765

>COG4377 Predicted membrane protein [Function unknown]

Probab=91.31  E-value=5.5  Score=30.68  Aligned_cols=71  Identities=14%  Similarity=0.161  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhhhchhHHHH--HHHHHHHHHHHHHhhCCchH
Q 029777           94 TAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQ--LFIIGCVLGSSYCWSGNLIS  169 (188)
Q Consensus        94 ~~~~~~~~~~~p~~EEl~fRg~l~~~l~~~~~~~~ail~ssllF~l~H~~~~~~~~--~~~~g~~~~~~y~~t~~i~~  169 (188)
                      ....++.+..+++.||-- |-..++.+.||-.-+    ..++.||+.|.....+..  +-...+..-.....|||...
T Consensus        77 l~y~IYG~lMAg~FEE~g-R~l~~rfl~kR~~~~----Ad~lAyglGHgGlEail~g~~S~~~l~i~~~Avn~g~~~~  149 (258)
T COG4377          77 LIYIIYGLLMAGFFEETG-RLLFFRFLEKRSLEK----ADALAYGLGHGGLEAILLGLTSLLNLYIVLSAVNTGNPQV  149 (258)
T ss_pred             cHHHHHHHHHHHHHHHHh-HHHHHHHHHhCcccc----hhHHHHhcccccHHHHHHHHHhHhhHHHhhhhhccCCHHH
Confidence            345588899999999964 777777776643332    378899999986533322  12233333333445666554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00