Citrus Sinensis ID: 029804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESECGDGSWK
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEcccccccccEEccHHHHHHHHccccccccEEcEEEEEEEEEEccccccccEEEEEEcccccccEEEEEEEEcccccccEEEEEEEcccccEEEcccccccEEEccccccccEEEEEEEEEccccEEEEEccccccccccccEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHcccccEEEEEEcccccccccccccHHHHHHHHccccHHHHHHcccEEEEEEEEEccccccEEEEEEcccccccEEEEEEEEEEcccccEEEEEEEEcccccEEEcEccccccEcccccccccEEEEEEEEEcccccEEEEccccccccccccEEccccEHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mrcknptlcsgrgtrviltdlnhsnqtdfVISSRAFMALsnqgkgqdilklgvvdveykrvpceyknqnLAVRVEessqkpnyLAVKVLYQGGQTEMVAMDVAQvgssnwgymsrnygavwdtsrvpngalQFRFVVtsgydgkwiwaknvlpadwkpgmiynsgvqitdiakegcsesecgdgswk
Flexible Loop (DISEMBL)
mrcknptlcsgrgtrVILTDLNHSNQTDFVISSRAFMALSnqgkgqdilKLGVVDVEYKRVPCEYKNQNLAVrveessqkpnyLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKegcsesecgdgswk
Low Complexity Region (SEG)
MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESECGDGSWK
Disordered region (IsUnstruct)
********CSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEE**QKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAK**************
Disordered Region (DISOPRED)
MRCK***LCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE*******
Disordered Region (DISEMBL)
MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKE*************
Disordered Region (DISPRO)
MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESECGD****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESECGDGSWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q9SVE5	265	Expansin-like A2 OS=Arabi	yes	no	0.983	0.694	0.643	2e-69
Q9LZT4	265	Expansin-like A1 OS=Arabi	no	no	0.962	0.679	0.644	2e-68
Q9LZT5	263	Expansin-like A3 OS=Arabi	no	no	0.962	0.684	0.646	4e-66
Q8H274	276	Expansin-like A3 OS=Oryza	yes	no	0.989	0.670	0.531	6e-59
Q10S70	279	Expansin-like A1 OS=Oryza	no	no	0.989	0.663	0.531	8e-56
Q7XCL0	275	Expansin-like A2 OS=Oryza	no	no	0.989	0.672	0.521	5e-50
Q5Z980	313	Expansin-like A4 OS=Oryza	no	no	0.957	0.571	0.387	9e-39
O23547	250	Expansin-like B1 OS=Arabi	no	no	0.903	0.676	0.390	1e-32
Q850K7	256	Expansin-like B1 OS=Oryza	no	no	0.898	0.656	0.366	5e-31
P58738	269	Expansin-B1 OS=Zea mays G	N/A	no	0.882	0.613	0.354	2e-22

>sp|Q9SVE5|EXLA2_ARATH Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1

 Score =  261 bits (667), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 121/188 (64%), Positives = 156/188 (82%), Gaps = 4/188 (2%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQ--GKGQDILKLGVVDVEY 58
           +RCKNPTLCS +GT VI+TDLN +NQTD V+SSRAF A++    G  +D+LK G+VD+EY
Sbjct: 79  VRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEY 138

Query: 59  KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYG 118
           +RVPC+Y N+ + VRVEESS+ PNYLA+K+LYQGGQTE+VA+ +AQVGSS+W YM+R++G
Sbjct: 139 RRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHG 198

Query: 119 AVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSE 178
           AVW T +VPNGALQFRFVVT+GYDGK +W++ VLPA+W+ G  Y++GVQITDIA+EGC  
Sbjct: 199 AVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSYDAGVQITDIAQEGC-- 256

Query: 179 SECGDGSW 186
             C D  W
Sbjct: 257 DPCDDHIW 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZT4|EXLA1_ARATH Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1

 Score =  258 bits (658), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 118/183 (64%), Positives = 156/183 (85%), Gaps = 3/183 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQ--GKGQDILKLGVVDVEY 58
           +RCKNP LCS +GT V++TDLN SNQTD V+SSRAF A++    G  +D+LK G+VD+EY
Sbjct: 78  VRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEY 137

Query: 59  KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSS-NWGYMSRNY 117
           +RVPC+Y N+N+ VRVEE+S+KPNYL +K+LYQGGQTE+V++D+AQVGSS NWGYM+R++
Sbjct: 138 QRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSH 197

Query: 118 GAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCS 177
           GAVW T +VP GA+QFRFVVT GYDGK IW+++VLP++W+ G IY++GVQITDIA+EGC 
Sbjct: 198 GAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIYDAGVQITDIAQEGCD 257

Query: 178 ESE 180
             +
Sbjct: 258 PCD 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZT5|EXLA3_ARATH Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1

 Score =  250 bits (639), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 119/184 (64%), Positives = 148/184 (80%), Gaps = 4/184 (2%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQD--ILKLGVVDVEY 58
           +RCKNP LC+ +GT V++TDLN SNQTD V+SSRAF A++    G D  +LK G+VDVEY
Sbjct: 78  VRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEY 137

Query: 59  KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYG 118
           +RVPC Y  +NL VRVEE+S+KPNYLA+K+LYQGGQTE+V +D+A VGSS W YMSR++G
Sbjct: 138 QRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHG 197

Query: 119 AVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSE 178
           AVW T +VP GALQF+F VT GYDGK +W+K VLPA+W  G IY++GVQITDIA+EGC  
Sbjct: 198 AVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIYDAGVQITDIAQEGC-- 255

Query: 179 SECG 182
             CG
Sbjct: 256 DTCG 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H274|EXLA3_ORYSJ Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1

 Score =  226 bits (577), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 100/188 (53%), Positives = 137/188 (72%), Gaps = 3/188 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           MRC+N  +CS  G RV+LTD + SN TDF++   AF  L+  G    + KL  + VEY+R
Sbjct: 91  MRCRNAEVCSNAGVRVVLTDFHRSNSTDFLLGGPAFAGLAKPGMAHKLKKLDALSVEYRR 150

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           +PC+YK++NL++ VEE S++PN L +K LYQGGQT+++A+DVAQVGSS+W +M+R YG V
Sbjct: 151 IPCDYKDKNLSILVEEQSKRPNNLVIKFLYQGGQTDILAVDVAQVGSSDWRFMTRVYGPV 210

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWA-KNVLPADWKPGMIYNSGVQITDIAKEGCSES 179
           W   R PNG LQFR VVT GYDGKW+WA + VLPA+W+PG +Y++G +I D+A+E C   
Sbjct: 211 WSIDRAPNGPLQFRAVVTGGYDGKWVWADREVLPANWQPGQVYDTGARIADVARESC--L 268

Query: 180 ECGDGSWK 187
           +C    WK
Sbjct: 269 DCATLDWK 276

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10S70|EXLA1_ORYSJ Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1

 Score =  216 bits (550), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 100/188 (53%), Positives = 134/188 (71%), Gaps = 3/188 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           +RCK+  LCS  G RV++TD   +N+T  V+SS AF A++  G    + +L  VDVEYKR
Sbjct: 94  VRCKDKKLCSNAGARVVVTDRARTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKR 153

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           VPCEY++++L+VRV+E S+ PN L +  LYQGGQT++VA+DVAQVGSS+W +M+R +G  
Sbjct: 154 VPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPS 213

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWA-KNVLPADWKPGMIYNSGVQITDIAKEGCSES 179
           W  +  P G LQ R VVT GYDGKW+WA + VLP  W+ G +Y++GVQITDIA+EGC   
Sbjct: 214 WSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEGC--F 271

Query: 180 ECGDGSWK 187
            C    WK
Sbjct: 272 PCDTHEWK 279

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XCL0|EXLA2_ORYSJ Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1

 Score =  197 bits (500), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 132/190 (69%), Gaps = 5/190 (2%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYK 59
           +RCK+  LCS  G +V++TD   S N+TD V+S+ A+ A++  G    +     VDVEYK
Sbjct: 88  VRCKDGKLCSTAGAKVVVTDEARSTNRTDLVLSAAAYAAMARPGMAAQLRTRRAVDVEYK 147

Query: 60  RVPCEYK-NQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYG 118
           RVPCEY   +NL++RVEE S+ P  L+++ LYQGGQT++VA+DVA VGSSNW +M+R+YG
Sbjct: 148 RVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRDYG 207

Query: 119 AVWDTSRVPNGALQFRFVVTSGYDGKWIWAK-NVLPADWKPGMIYNSGVQITDIAKEGCS 177
             W T++ P G LQFR VVT GYDGKW+WA   VLP  W  G +Y++GVQI D+A+EGC 
Sbjct: 208 PAWSTAQAPAGPLQFRVVVTGGYDGKWVWADGEVLPRRWTAGRVYDAGVQIADVAQEGC- 266

Query: 178 ESECGDGSWK 187
              C    WK
Sbjct: 267 -YPCDTQEWK 275

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5Z980|EXLA4_ORYSJ Expansin-like A4 OS=Oryza sativa subsp. japonica GN=EXLA4 PE=2 SV=1

 Score =  159 bits (402), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 129/204 (63%), Gaps = 25/204 (12%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTD------------FVISSRAFMALSNQG-KGQD 47
           +RC++  LC   G +V++ D+    + +            F I+  AF A++ QG    +
Sbjct: 93  LRCRDRRLCGEDGVKVVVADMAKQPEQEGEMNRTAGGSLQFRITEDAFAAMAKQGVSAHE 152

Query: 48  ILKLGVVDVEYKRVPCEYK-NQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVG 106
           + +   ++V+++R+PCEY+ ++ LAVRVEE+S+ P +LA++ LYQGGQT++ A+++AQ  
Sbjct: 153 LTRQRTLEVDFRRIPCEYRESRRLAVRVEEASRNPTHLAIRFLYQGGQTDIAAVEIAQAN 212

Query: 107 SS--------NWGYMSRNYGA--VWDTSRVPNGALQFRFVVTSGYDGKWIWAK-NVLPAD 155
           ++        +W YM+R  GA  VW TSR P G L+ R VVT+G  GKW+ +   VLPAD
Sbjct: 213 ATPPSSSYYSSWRYMTRRDGAPGVWTTSRAPVGPLRLRVVVTAGSGGKWLRSDGEVLPAD 272

Query: 156 WKPGMIYNSGVQITDIAKEGCSES 179
           W+PG +Y++G+++TD+A   CS S
Sbjct: 273 WRPGEVYDTGLRVTDVAVRSCSLS 296

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O23547|EXLB1_ARATH Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 95/169 (56%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           +RCK P  CS  G  V+ TD    + TDF++S +A+  ++  G    +   GVV+VEY+R
Sbjct: 82  VRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQLYSFGVVNVEYQR 141

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           +PC Y   NL  ++ E S  P+YLA+ VLY GG  +++A++V Q     W  M R +GAV
Sbjct: 142 IPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAV 201

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQIT 169
            D    P G L  RF+V       WI + N +PADW  G  Y+S + +T
Sbjct: 202 HDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATYDSNILLT 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q850K7|EXLB1_ORYSJ Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2

 Score =  134 bits (336), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 4/172 (2%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALS-NQGKGQDILKLGVVDVEYK 59
           +RC NP  CS  G  +++TD   S+ TDF++S  AF  ++ +   G  +L LGVV +EY+
Sbjct: 82  VRCTNPYYCSPNGVTIVITDSGASDGTDFILSQHAFTRMAQSTDAGTALLTLGVVGIEYR 141

Query: 60  RVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGA 119
           RV C Y N+N+  ++ ESS  PNYL  ++ YQ G  +++A+ + +  +     +SR +GA
Sbjct: 142 RVSCTYPNKNIVFKITESSNFPNYLEFEIWYQQGNQDIIAVQLCETVNLTCQLLSRTHGA 201

Query: 120 VWDTSRVPNGALQFRFVVTSGYD---GKWIWAKNVLPADWKPGMIYNSGVQI 168
           VW     P+G L  R + +SG       W+   N++P +W  G  Y+SGVQ+
Sbjct: 202 VWAAVSPPSGPLSIRMLFSSGAPRGGDTWLVPTNIVPQNWTAGATYDSGVQV 253

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P58738|EXPB1_MAIZE Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 7/172 (4%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSN--QTDFVISSRAFMALSNQGKGQDILKLGVVDVEY 58
           +RCK    CSG    V +TD+N+       F +S +AF +L+  G    I   G++DVE+
Sbjct: 100 VRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEF 159

Query: 59  KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYG 118
           +RV C+Y      V   E    PNYLAV V Y     ++V M++    S+ W  M  ++G
Sbjct: 160 RRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWG 219

Query: 119 AVW--DTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQI 168
           A+W  DT++   G    R    S   GK + AK+V+PA+W+P  +Y S VQ 
Sbjct: 220 AIWRMDTAKALKGPFSIRLTSES---GKKVIAKDVIPANWRPDAVYTSNVQF 268

May aid fertilization by loosening the cell wall of the stigma and style, thereby facilitating penetration of the pollen tube. Acts selectively on grass cell walls, which are relatively poor in pectins and xyloglucans and rich in glucuronoarabinoxylans and (1-3),(1-4)-beta-D-glucans, when compared with cell walls of other angiosperms, including other monocots.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
255587002	259	Beta-expansin 1a precursor, putative [Ri	0.989	0.714	0.818	1e-88
224105087	259	hypothetical protein POPTRDRAFT_832983 [	0.989	0.714	0.796	8e-87
356543973	261	PREDICTED: expansin-like A1-like [Glycin	0.983	0.704	0.768	8e-83
224078466	259	hypothetical protein POPTRDRAFT_713415 [	0.989	0.714	0.759	2e-82
33111959	265	expansin-like protein [Quercus robur]	0.989	0.698	0.754	1e-80
83778371	260	expansin-like protein precursor [Solanum	0.989	0.711	0.727	6e-80
388506836	260	unknown [Medicago truncatula]	0.983	0.707	0.731	2e-79
217071872	260	unknown [Medicago truncatula]	0.983	0.707	0.731	2e-79
350535991	261	expansin-like protein precursor [Solanum	0.989	0.708	0.716	7e-79
183238956	268	expansin-like 1 protein [Ipomoea batatas	0.978	0.682	0.743	9e-79

>gi|255587002|ref|XP_002534094.1| Beta-expansin 1a precursor, putative [Ricinus communis] gi|223525857|gb|EEF28288.1| Beta-expansin 1a precursor, putative [Ricinus communis]

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 153/187 (81%), Positives = 174/187 (93%), Gaps = 2/187 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           +RC+N T+CS +GT VILTDLNH+NQTDFV+SSRAFMA++N+G GQDIL+LG+VD+EYKR
Sbjct: 75  IRCRNKTMCSSKGTTVILTDLNHNNQTDFVLSSRAFMAMANKGMGQDILRLGIVDIEYKR 134

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           VPC YKNQNLAVRVEESSQKPNYLA+KVLYQGGQTE+VAMDVAQVGSSNW YMSRNYGAV
Sbjct: 135 VPCVYKNQNLAVRVEESSQKPNYLAIKVLYQGGQTEIVAMDVAQVGSSNWSYMSRNYGAV 194

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 180
           WDTSRVP GALQFRFVVT+GYDGKWIWAK+VLPADWKPG++Y+SGVQI+DIA+EGC  S 
Sbjct: 195 WDTSRVPGGALQFRFVVTAGYDGKWIWAKSVLPADWKPGVVYDSGVQISDIAQEGC--SP 252

Query: 181 CGDGSWK 187
           C D  WK
Sbjct: 253 CDDEIWK 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105087|ref|XP_002313682.1| hypothetical protein POPTRDRAFT_832983 [Populus trichocarpa] gi|222850090|gb|EEE87637.1| hypothetical protein POPTRDRAFT_832983 [Populus trichocarpa]

 Score =  324 bits (831), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 149/187 (79%), Positives = 172/187 (91%), Gaps = 2/187 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           +RCKN  LCS RGT VI+TDLN++NQTDFV+SSRAFMA++N+G GQD+LK G++DVEYKR
Sbjct: 75  IRCKNTALCSSRGTTVIVTDLNNNNQTDFVLSSRAFMAMANKGMGQDVLKHGILDVEYKR 134

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           VPCEYKNQNLAVRVEESS+KPNYLA+K+LYQGGQTE+VAMDVA+VGSSNWG+MSRN+GAV
Sbjct: 135 VPCEYKNQNLAVRVEESSKKPNYLAIKLLYQGGQTEVVAMDVAKVGSSNWGFMSRNHGAV 194

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 180
           WDT RVP GALQFRFVVT+G+DGKWIWA+ VLP DWKPGM Y+SGVQITDIA+EGC  S 
Sbjct: 195 WDTDRVPAGALQFRFVVTAGFDGKWIWAQKVLPEDWKPGMTYDSGVQITDIAQEGC--SP 252

Query: 181 CGDGSWK 187
           CGDG WK
Sbjct: 253 CGDGIWK 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543973|ref|XP_003540432.1| PREDICTED: expansin-like A1-like [Glycine max]

 Score =  311 bits (797), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 143/186 (76%), Positives = 165/186 (88%), Gaps = 2/186 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           +RCKNPTLCS  GTRV+LTDLNH+NQTDFV+SSRAF  ++ +G G+ ILKLG+ D+EYKR
Sbjct: 77  IRCKNPTLCSKEGTRVVLTDLNHNNQTDFVLSSRAFAGMAQKGMGKQILKLGIADIEYKR 136

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           VPCEYK QNLAVRVEESS+KP YLA+K LYQGGQTE+VA+DVAQVGSSNW +MSR+ GAV
Sbjct: 137 VPCEYKKQNLAVRVEESSKKPEYLAIKFLYQGGQTEIVAVDVAQVGSSNWSFMSRSDGAV 196

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 180
           WDTSRVP GALQFR VVT+GYDGKWIWAK VLPADWK G+IY+SG+QITDIA+EGC  S 
Sbjct: 197 WDTSRVPQGALQFRLVVTAGYDGKWIWAKKVLPADWKNGLIYDSGLQITDIAQEGC--SP 254

Query: 181 CGDGSW 186
           C DG+W
Sbjct: 255 CDDGTW 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078466|ref|XP_002305545.1| hypothetical protein POPTRDRAFT_713415 [Populus trichocarpa] gi|118483011|gb|ABK93417.1| unknown [Populus trichocarpa] gi|222848509|gb|EEE86056.1| hypothetical protein POPTRDRAFT_713415 [Populus trichocarpa]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 142/187 (75%), Positives = 170/187 (90%), Gaps = 2/187 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           +RCK+ TLCS  GTRVI+TDLN +NQTDFV+SSRAFMA++N+ KG++ILK G+V+VEYKR
Sbjct: 75  IRCKDTTLCSREGTRVIVTDLNRNNQTDFVLSSRAFMAMANKDKGRNILKQGIVEVEYKR 134

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           VPCEYKNQNLAVRVEESS+  NYLA+K+LYQGGQTE+VA+D A+VGSSNWG+MSRN+GAV
Sbjct: 135 VPCEYKNQNLAVRVEESSKNSNYLAIKLLYQGGQTEVVAIDFAKVGSSNWGFMSRNHGAV 194

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 180
           WD+ RVP+GALQFRFV+T+G+DGKWIWA+NVLP DWKPGM Y+SGVQITDIA+EGC  S 
Sbjct: 195 WDSDRVPSGALQFRFVITAGFDGKWIWARNVLPEDWKPGMTYDSGVQITDIAQEGC--SP 252

Query: 181 CGDGSWK 187
           C DG WK
Sbjct: 253 CDDGIWK 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33111959|emb|CAE12163.1| expansin-like protein [Quercus robur]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/187 (75%), Positives = 165/187 (88%), Gaps = 2/187 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           +RCKN + C+  GT V +TDLN +NQTDFV+SSRAFMA++ +G GQDILKLG+VDVEYKR
Sbjct: 81  VRCKNTSHCTKEGTIVTVTDLNRNNQTDFVVSSRAFMAMAQKGMGQDILKLGIVDVEYKR 140

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           VPC+YKNQNLAVRVEE SQKPNYLAVK LYQG QTE+V +DVAQVGSSNWG+MS NYGAV
Sbjct: 141 VPCQYKNQNLAVRVEEPSQKPNYLAVKFLYQGSQTEIVGVDVAQVGSSNWGFMSHNYGAV 200

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 180
           WDTSRVP+GALQFR V+T+GYDGK+IWA++VLPADWK G+IY+SGVQ TDIA+EGC  S 
Sbjct: 201 WDTSRVPSGALQFRIVITAGYDGKYIWAQHVLPADWKSGVIYDSGVQFTDIAQEGC--SP 258

Query: 181 CGDGSWK 187
           C D +WK
Sbjct: 259 CDDEAWK 265

Source: Quercus robur

Species: Quercus robur

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83778371|gb|ABC47126.1| expansin-like protein precursor [Solanum tuberosum]

 Score =  301 bits (772), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 136/187 (72%), Positives = 169/187 (90%), Gaps = 2/187 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           +RCK+P +CS  GT V++TDLN +NQTDFVISSRAFMA++ +GK +D+LKLG+ DVEYKR
Sbjct: 75  IRCKDPKICSKHGTTVMVTDLNTNNQTDFVISSRAFMAMAIEGKAKDVLKLGIADVEYKR 134

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           VPC+YK +NLAVRV+ESSQKP YLA+ + YQGGQTE+V++DVAQVGSSNW +++RN+GA+
Sbjct: 135 VPCDYKGKNLAVRVDESSQKPYYLAISIFYQGGQTEIVSVDVAQVGSSNWNFLTRNHGAI 194

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 180
           WDTSRVP+GALQFRFVVT+GYDGKWIWAK+VLP+DWK G+IY++GVQITDIA+EGC  S 
Sbjct: 195 WDTSRVPSGALQFRFVVTAGYDGKWIWAKSVLPSDWKMGVIYDTGVQITDIAQEGC--SP 252

Query: 181 CGDGSWK 187
           C DGSWK
Sbjct: 253 CDDGSWK 259

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506836|gb|AFK41484.1| unknown [Medicago truncatula]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 136/186 (73%), Positives = 163/186 (87%), Gaps = 2/186 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           +RCKN  +C+  GT+V+LTDLNH+NQTDFV+SSRAF A++ +G  Q ILKLG+VD+EYKR
Sbjct: 76  VRCKNQAICTKEGTKVVLTDLNHNNQTDFVLSSRAFTAMAQKGMSQQILKLGIVDIEYKR 135

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           VPCEYK QNLAVRVEESS+KP+YLA+K LYQGGQTE+V +DVAQVGSSNW ++SRN+GAV
Sbjct: 136 VPCEYKKQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVGVDVAQVGSSNWSFLSRNHGAV 195

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 180
           WDTSRVP GALQFR VVTSGYDGKW+WAK VLPADWK G+IY+S +QIT+IA+EGC  S 
Sbjct: 196 WDTSRVPQGALQFRIVVTSGYDGKWLWAKKVLPADWKNGVIYDSDIQITEIAQEGC--SP 253

Query: 181 CGDGSW 186
           C D +W
Sbjct: 254 CNDETW 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071872|gb|ACJ84296.1| unknown [Medicago truncatula]

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 136/186 (73%), Positives = 163/186 (87%), Gaps = 2/186 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           +RCKN  +C+  GT+V+LTDLNH+NQTDFV+SSRAF A++ +G  Q ILKLG+VD+EYKR
Sbjct: 76  VRCKNQAICTKEGTKVVLTDLNHNNQTDFVLSSRAFTAMAQKGMSQQILKLGIVDIEYKR 135

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           VPCEYK QNLAVRVEESS+KP+YLA+K LYQGGQTE+V +DVAQVGSSNW ++SRN+GAV
Sbjct: 136 VPCEYKKQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVGVDVAQVGSSNWSFLSRNHGAV 195

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 180
           WDTSRVP GALQFR VVTSGYDGKW+WAK VLPADWK G+IY+S +QIT+IA+EGC  S 
Sbjct: 196 WDTSRVPQGALQFRIVVTSGYDGKWLWAKKVLPADWKNGVIYDSDIQITEIAQEGC--SP 253

Query: 181 CGDGSW 186
           C D +W
Sbjct: 254 CNDETW 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535991|ref|NP_001234736.1| expansin-like protein precursor [Solanum lycopersicum] gi|77176889|gb|ABA64550.1| expansin-like protein precursor [Solanum lycopersicum]

 Score =  298 bits (763), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 168/187 (89%), Gaps = 2/187 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           +RC +P +CS  GT V++TDLN +NQTDFVISSRAFMA++ +GK QD+ KLG+ DVEYKR
Sbjct: 75  IRCTDPKICSKHGTTVMVTDLNTNNQTDFVISSRAFMAMAIEGKAQDVHKLGIADVEYKR 134

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           VPC+YK +NLAVRV+ESSQKP+YLA+ + YQGGQTE+V++DVAQVGSSNW ++SRN+GA+
Sbjct: 135 VPCDYKGKNLAVRVDESSQKPHYLAISIFYQGGQTEIVSVDVAQVGSSNWNFLSRNHGAI 194

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 180
           WDTSRVP+GALQFRFVVT+GYDGKWIWAK+VLP+DWK G++Y++G+QITDIA+EGC  S 
Sbjct: 195 WDTSRVPSGALQFRFVVTAGYDGKWIWAKSVLPSDWKNGVVYDTGLQITDIAQEGC--SP 252

Query: 181 CGDGSWK 187
           C DGSWK
Sbjct: 253 CDDGSWK 259

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|183238956|gb|ACC61048.1| expansin-like 1 protein [Ipomoea batatas]

 Score =  298 bits (762), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 136/183 (74%), Positives = 163/183 (89%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           MRCK+P LC+ +GT VI+TDLN +NQTDFVISSRAF A++ QGK QD+LKLG+ DV+YKR
Sbjct: 83  MRCKDPNLCTKQGTTVIVTDLNTNNQTDFVISSRAFRAMATQGKDQDLLKLGIADVDYKR 142

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           VPC YK +NLAV VEE+SQKPNYLA+K LYQGGQTE+VA+DVAQVGSSNW +MSRN+GA+
Sbjct: 143 VPCNYKTKNLAVFVEETSQKPNYLAIKFLYQGGQTEIVAVDVAQVGSSNWNFMSRNHGAI 202

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 180
           WDTSRVP+GALQFRFVVT+GYDGKW WAKNV+PADWK G+IY++ +QITDIA+EGCS  +
Sbjct: 203 WDTSRVPSGALQFRFVVTAGYDGKWYWAKNVMPADWKNGVIYDAALQITDIAQEGCSPCD 262

Query: 181 CGD 183
             D
Sbjct: 263 HDD 265

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2121803	265	EXLA2 "expansin-like A2" [Arab	0.983	0.694	0.643	5.8e-66
TAIR|locus:2077177	265	EXLA1 "expansin-like A1" [Arab	0.983	0.694	0.634	8.5e-65
TAIR|locus:2077167	263	EXLA3 "expansin-like A3" [Arab	0.962	0.684	0.646	3.3e-63
TAIR|locus:2130444	250	EXLB1 "expansin-like B1" [Arab	0.903	0.676	0.390	2.9e-32
TAIR|locus:2018521	273	EXPB2 "expansin B2" [Arabidops	0.871	0.597	0.331	5.1e-19
TAIR|locus:2123643	264	EXPB3 "expansin B3" [Arabidops	0.898	0.636	0.28	3.7e-16
TAIR|locus:2051338	271	EXPB1 "expansin B1" [Arabidops	0.898	0.619	0.275	4.7e-16
TAIR|locus:4515102723	223	EXPB6 "AT1G65681" [Arabidopsis	0.866	0.726	0.307	5.4e-15
TAIR|locus:2055594	259	EXPB4 "expansin B4" [Arabidops	0.839	0.606	0.317	1.4e-14
TAIR|locus:2034680	262	EXPA7 "expansin A7" [Arabidops	0.780	0.557	0.322	1.6e-10

TAIR|locus:2121803 EXLA2 "expansin-like A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 121/188 (64%), Positives = 156/188 (82%)

Query:     1 MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQ--GKGQDILKLGVVDVEY 58
             +RCKNPTLCS +GT VI+TDLN +NQTD V+SSRAF A++    G  +D+LK G+VD+EY
Sbjct:    79 VRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEY 138

Query:    59 KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYG 118
             +RVPC+Y N+ + VRVEESS+ PNYLA+K+LYQGGQTE+VA+ +AQVGSS+W YM+R++G
Sbjct:   139 RRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHG 198

Query:   119 AVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSE 178
             AVW T +VPNGALQFRFVVT+GYDGK +W++ VLPA+W+ G  Y++GVQITDIA+EGC  
Sbjct:   199 AVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSYDAGVQITDIAQEGCDP 258

Query:   179 SECGDGSW 186
               C D  W
Sbjct:   259 --CDDHIW 264

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

TAIR|locus:2077177 EXLA1 "expansin-like A1" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 120/189 (63%), Positives = 157/189 (83%)

Query:     1 MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQ--GKGQDILKLGVVDVEY 58
             +RCKNP LCS +GT V++TDLN SNQTD V+SSRAF A++    G  +D+LK G+VD+EY
Sbjct:    78 VRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEY 137

Query:    59 KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSS-NWGYMSRNY 117
             +RVPC+Y N+N+ VRVEE+S+KPNYL +K+LYQGGQTE+V++D+AQVGSS NWGYM+R++
Sbjct:   138 QRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSH 197

Query:   118 GAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCS 177
             GAVW T +VP GA+QFRFVVT GYDGK IW+++VLP++W+ G IY++GVQITDIA+EGC 
Sbjct:   198 GAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIYDAGVQITDIAQEGCD 257

Query:   178 ESECGDGSW 186
                C    W
Sbjct:   258 P--CDAHIW 264

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2077167 EXLA3 "expansin-like A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 119/184 (64%), Positives = 148/184 (80%)

Query:     1 MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQD--ILKLGVVDVEY 58
             +RCKNP LC+ +GT V++TDLN SNQTD V+SSRAF A++    G D  +LK G+VDVEY
Sbjct:    78 VRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEY 137

Query:    59 KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYG 118
             +RVPC Y  +NL VRVEE+S+KPNYLA+K+LYQGGQTE+V +D+A VGSS W YMSR++G
Sbjct:   138 QRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHG 197

Query:   119 AVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSE 178
             AVW T +VP GALQF+F VT GYDGK +W+K VLPA+W  G IY++GVQITDIA+EGC  
Sbjct:   198 AVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIYDAGVQITDIAQEGCDT 257

Query:   179 SECG 182
               CG
Sbjct:   258 --CG 259

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2130444 EXLB1 "expansin-like B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 66/169 (39%), Positives = 95/169 (56%)

Query:     1 MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
             +RCK P  CS  G  V+ TD    + TDF++S +A+  ++  G    +   GVV+VEY+R
Sbjct:    82 VRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQLYSFGVVNVEYQR 141

Query:    61 VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
             +PC Y   NL  ++ E S  P+YLA+ VLY GG  +++A++V Q     W  M R +GAV
Sbjct:   142 IPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAV 201

Query:   121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQIT 169
              D    P G L  RF+V       WI + N +PADW  G  Y+S + +T
Sbjct:   202 HDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATYDSNILLT 250

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS

GO:0009828 "plant-type cell wall loosening" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2018521 EXPB2 "expansin B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 57/172 (33%), Positives = 89/172 (51%)

Query:     1 MRCKNPTLCSGRGTRVILTDLNHS---NQTDFVISSRAFMALSNQGKGQDILKLGVVDVE 57
             ++C + + CS     V++TD           F +S  AF A++  G+   +  +G + + 
Sbjct:   103 VKCTSKSACSKNPVTVVITDECPGCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQIL 162

Query:    58 YKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQ-VGSSNWGYMSRN 116
             YK+V C Y  + +  +V++ S   N  AV V Y  G  E+  +++ Q + S  W  MS++
Sbjct:   163 YKKVECNYIGKTVTFQVDKGSNA-NSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQS 221

Query:   117 YGAVW--DTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGV 166
             +GAVW  D S      L  R  VTS   GK + A NV+PA+W+PG IY S V
Sbjct:   222 WGAVWKLDVSSPLRAPLSLR--VTSLESGKTVVASNVIPANWQPGAIYKSNV 271

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2123643 EXPB3 "expansin B3" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 49/175 (28%), Positives = 86/175 (49%)

Query:     1 MRCKNPTLCSGRGTRVILTDLN---HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVE 57
             +RC + ++CS R   VI+TD         T F +S   F  L+  G+   +   G++ V 
Sbjct:    92 VRCLDKSICSRRAVTVIITDECPGCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVI 151

Query:    58 YKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNY 117
             Y+R  C+Y+ +N+A  V E S    +L++ V ++ G+ ++ +M + Q G+  W  M   +
Sbjct:   152 YRRTACKYRGKNIAFHVNEGSTD-FWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVW 210

Query:   118 GAVWDTSRVP-NGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDI 171
             GA W     P  G    +    S   GK + A +V+P +W P   Y+S +  + +
Sbjct:   211 GANWCIIGGPLKGPFSIKLTTLSA--GKTLSATDVVPRNWAPKATYSSRLNFSPV 263

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0019953 "sexual reproduction" evidence=IEA

GO:0006949 "syncytium formation" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2051338 EXPB1 "expansin B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 49/178 (27%), Positives = 87/178 (48%)

Query:     1 MRCKNPTLCSGRGTRVILTDLNHSN------QTDFVISSRAFMALSNQGKGQDILKLGVV 54
             +RC + T+CS R   +I TD + S        T F +S  AF  ++  G    I   G++
Sbjct:    96 VRCLDKTICSKRAVTIIATDQSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLL 155

Query:    55 DVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMS 114
             ++ Y+R  C+Y+ +N+A  V   S    +L++ + Y+ G+ ++ +M + Q GS  W  M 
Sbjct:   156 NILYRRTACKYRGKNIAFHVNAGSTD-YWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMK 214

Query:   115 RNYGAVWDTSRVP-NGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDI 171
               +GA W     P  G    +    S  + K + A +V+P++W P   Y S +  + +
Sbjct:   215 HIWGANWCIVEGPLKGPFSVKLTTLS--NNKTLSATDVIPSNWVPKATYTSRLNFSPV 270

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:4515102723 EXPB6 "AT1G65681" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 52/169 (30%), Positives = 78/169 (46%)

Query:     3 CKNPTLCSGRGTRVILTDLNH-----SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVE 57
             C     CS R   V +TD        S    F +S +A  AL+  G+G  +   GV+ V 
Sbjct:    54 CNGHPACSRRPITVTITDECPGGPCASEPAHFDLSGKAMGALARPGQGDRLRSAGVLRVY 113

Query:    58 YKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNY 117
             Y+RV C Y+  N+A R++  +  P Y++  V Y+ G  ++  +++ Q     +  M    
Sbjct:   114 YRRVECLYRRTNIAFRMDPGAN-PYYISFVVEYENGDGDLAYIEI-QPADGEFIPMQEMR 171

Query:   118 GAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGV 166
              AVW  S        F   +TS    K + A NV+PA+WKP   Y S V
Sbjct:   172 SAVWKISSGSPLTGPFNIRLTSAESHKVVLAYNVIPANWKPNETYRSVV 220

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2055594 EXPB4 "expansin B4" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 54/170 (31%), Positives = 81/170 (47%)

Query:     3 CKNPTLCSGRGTRVILTDLNH-----SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVE 57
             C     CSG    V +TD        S      +S +A  AL+  G+   +   GV+ V 
Sbjct:    91 CIGHPACSGSPITVTITDECPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVN 150

Query:    58 YKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNY 117
             YKR  C Y+  N+  R++  +  P Y++  V Y+ G  ++  +++   G S +  M    
Sbjct:   151 YKRAACLYRGTNIVFRMDAGAN-PYYISFVVEYENGDGDLSNVEIQPAGGS-FISMQEMR 208

Query:   118 GAVWDTSRVPNG-ALQ--FRFVVTSGYDGKWIWAKNVLPADWKPGMIYNS 164
              AVW   +V +G AL+  F   +TSG   K I A NV+PA+WKP   Y S
Sbjct:   209 SAVW---KVNSGSALRGPFNIRLTSGESHKVIVAYNVIPANWKPDESYRS 255

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2034680 EXPA7 "expansin A7" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 57/177 (32%), Positives = 89/177 (50%)

Query:     4 KNPTLCSGRGTRVILTDL------NHSN--------QTDFVISSRAFMALSNQGKGQDIL 49
             K+P   SG+ T V  T+L        SN        +T F ++  AFM L+         
Sbjct:    96 KSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLA-------YW 148

Query:    50 KLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGS-S 108
             + G++ V Y+RVPC+ ++  +  + + +S    +L + V+  GG  ++ +M V   GS +
Sbjct:   149 RAGIIPVAYRRVPCQ-RSGGMRFQFQGNSY---WLLIFVMNVGGAGDIKSMAVK--GSRT 202

Query:   109 NWGYMSRNYGAVWDT-SRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNS 164
             NW  MS N+GA +   S +   +L FR  VTS   G+ I+A NV PA+W  G  Y S
Sbjct:   203 NWISMSHNWGASYQAFSSLYGQSLSFR--VTSYTTGETIYAWNVAPANWSGGKTYKS 257

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0048446 "petal morphogenesis" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SVE5	EXLA2_ARATH	No assigned EC number	0.6436	0.9839	0.6943	yes	no
Q8H274	EXLA3_ORYSJ	No assigned EC number	0.5319	0.9893	0.6702	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrEXLA2 hypothetical protein (260 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
PLN03023	247	PLN03023, PLN03023, Expansin-like B1; Provisional	3e-55
pfam01357	82	pfam01357, Pollen_allerg_1, Pollen allergen	1e-27
PLN00050	247	PLN00050, PLN00050, expansin A; Provisional	6e-09
PLN00193	256	PLN00193, PLN00193, expansin-A; Provisional	8e-07

>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional

 Score =  174 bits (443), Expect = 3e-55
 Identities = 71/169 (42%), Positives = 105/169 (62%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60
           +RCK P LCS  G  V++TD    ++TDF++S RA+  L+      ++   GVVDVEY+R
Sbjct: 79  VRCKAPNLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRR 138

Query: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
           +PC Y   NL  +V E S+ P+YLA+ +LYQ GQ +++A+++ Q     W  M + YGAV
Sbjct: 139 IPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAV 198

Query: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQIT 169
           WD    P G +  RF V+      W+ AKNV+P+DWK G+ Y+S +Q+ 
Sbjct: 199 WDMPNPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQLD 247

Length = 247

>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen

 Score = 98.8 bits (247), Expect = 1e-27
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 70  LAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPN- 128
           +   V   S  P +LAV V   GG  ++VA+++ + GS  W  MSRN+GA W +  V   
Sbjct: 1   VRFTVNGGS-NPYFLAVLVENVGGDGDIVAVEIKEAGSGEWIPMSRNWGANWQSDSVLLG 59

Query: 129 GALQFRFVVTSGYDGKWIWAKNVLP 153
           G L FR  VTS   GK + A NV+P
Sbjct: 60  GPLSFR--VTSSDSGKTLVADNVIP 82

This family contains allergens lol PI, PII and PIII from Lolium perenne. Length = 82

>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional

 Score = 53.5 bits (128), Expect = 6e-09
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 9/114 (7%)

Query: 50  KLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN 109
           K G+V V+Y+RV C  K+  +   +   S     L   V   GG  ++VA+ + +   SN
Sbjct: 137 KAGIVPVQYRRVACR-KSGGIRFTINGHSYFNLVLITNV---GGAGDIVAVSI-KGSKSN 191

Query: 110 WGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIY 162
           W  MSRN+G  W ++   NG AL F+ V TS  DG+ + + N  P++W  G  Y
Sbjct: 192 WQAMSRNWGQNWQSNSYLNGQALSFK-VTTS--DGRTVISNNAAPSNWAFGQTY 242

Length = 247

>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional

 Score = 47.6 bits (113), Expect = 8e-07
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 17/125 (13%)

Query: 48  ILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQG----GQTEMVAMDVA 103
           I + G+V V ++RVPC+       VR   + +  +Y  + VL       G  + V++  +
Sbjct: 143 IYRGGIVPVLFQRVPCKKHG---GVRFTINGR--DYFEL-VLISNVGGAGSIQSVSIKGS 196

Query: 104 QVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIY 162
           + G   W  MSRN+GA W ++   +G +L F+   T   DG+  +  NV+PA+W  G  +
Sbjct: 197 KTG---WMAMSRNWGANWQSNAYLDGQSLSFKVTTT---DGQTRFFLNVVPANWGFGQTF 250

Query: 163 NSGVQ 167
           +S VQ
Sbjct: 251 SSSVQ 255

Length = 256

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
PLN03023	247	Expansin-like B1; Provisional	100.0
PLN00193	256	expansin-A; Provisional	100.0
PLN00050	247	expansin A; Provisional	100.0
PLN00115	118	pollen allergen group 3; Provisional	99.96
PF01357	82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	99.95
COG4305	232	Endoglucanase C-terminal domain/subunit and relate	99.9
smart00837	87	DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b	99.53
PLN03024	125	Putative EG45-like domain containing protein 1; Pr	99.33
PF03330	78	DPBB_1: Rare lipoprotein A (RlpA)-like double-psi	99.21
PF00967	119	Barwin: Barwin family; InterPro: IPR001153 Barwin	97.35
COG0797	233	RlpA Lipoproteins [Cell envelope biogenesis, outer	96.33
TIGR00413	208	rlpA rare lipoprotein A. This is a family of proka	95.82
PF07249	119	Cerato-platanin: Cerato-platanin; InterPro: IPR010	93.29
PF03404	131	Mo-co_dimer: Mo-co oxidoreductase dimerisation dom	89.11
PRK10672	361	rare lipoprotein A; Provisional	89.06
cd02110	317	SO_family_Moco_dimer Subgroup of sulfite oxidase (	84.24

>PLN03023 Expansin-like B1; Provisional

Probab=100.00  E-value=8.3e-55  Score=367.88  Aligned_cols=168  Identities=43%  Similarity=0.900  Sum_probs=159.0

Q ss_pred             CeeCCCCCCcCCCcEEEEecCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccccCCcEEEEEecCCCC
Q 029804            1 MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQK   80 (187)
Q Consensus         1 v~C~~~~~C~~~~v~V~vtD~Cp~~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~~g~ni~~~v~~gS~~   80 (187)
                      |||.++++|++++|+|+|||+||.++.|||||.+||.+||.+|++++|+++|+|+|+||||||.++|++|+|+|+++|++
T Consensus        79 irC~~~~~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~  158 (247)
T PLN03023         79 VRCKAPNLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRF  158 (247)
T ss_pred             eecCCCCccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999998999999999966


Q ss_pred             CcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCCCCcceEEEEEEEeCCCC-eEEEEccccCCCCCCC
Q 029804           81 PNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDG-KWIWAKNVLPADWKPG  159 (187)
Q Consensus        81 ~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~l~gPlsvRvt~t~~~~G-~~iv~~~vip~~w~~G  159 (187)
                      ++||+++|.|++|++||++||||++++..|++|+|+|||+|+++.+|+|||+||+++++ .+| +++++.||||++|++|
T Consensus       159 p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~Gp~slrf~v~~-~~g~~~vva~nViPa~Wk~G  237 (247)
T PLN03023        159 PDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSG-SAGQTWVQAKNVIPSDWKAG  237 (247)
T ss_pred             CceEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCCceeEEEEEEe-CCCcEEEEECceeCCCCCCC
Confidence            99999999999999999999999987779999999999999999999999999998876 466 4599999999999999


Q ss_pred             cEEecCcccc
Q 029804          160 MIYNSGVQIT  169 (187)
Q Consensus       160 ~~y~t~vqf~  169 (187)
                      ++|++++||+
T Consensus       238 ~TY~s~vq~~  247 (247)
T PLN03023        238 VAYDSNIQLD  247 (247)
T ss_pred             CEEecccccC
Confidence            9999999995

>PLN00193 expansin-A; Provisional

Probab=100.00  E-value=2.6e-48  Score=329.86  Aligned_cols=153  Identities=24%  Similarity=0.508  Sum_probs=140.8

Q ss_pred             CeeC---CCCCCcCC-CcEEEEecCCCC--------------CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEe
Q 029804            1 MRCK---NPTLCSGR-GTRVILTDLNHS--------------NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVP   62 (187)
Q Consensus         1 v~C~---~~~~C~~~-~v~V~vtD~Cp~--------------~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~   62 (187)
                      |||.   ++++|..+ +|+|+|||+||+              ++.|||||++||.+||.       ++.|+|+|+|||||
T Consensus        85 v~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVp  157 (256)
T PLN00193         85 IMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVP  157 (256)
T ss_pred             EECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEec
Confidence            5784   57789765 799999999985              57899999999999998       89999999999999


Q ss_pred             ccccCCcEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCCCCc-ceEEEEEEEeCC
Q 029804           63 CEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSGY  141 (187)
Q Consensus        63 C~~~g~ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~l~g-PlsvRvt~t~~~  141 (187)
                      |.++| +|+|+|++   ++||++++|.|++|++||++|+||+++ +.|++|+|+||++|+++.+|.+ ||+||||+   .
T Consensus       158 C~~~G-~i~f~v~g---n~y~~~vlv~nv~G~gdV~~v~Ik~~~-~~W~~M~R~wGa~W~~~~~l~g~plsfRvts---~  229 (256)
T PLN00193        158 CKKHG-GVRFTING---RDYFELVLISNVGGAGSIQSVSIKGSK-TGWMAMSRNWGANWQSNAYLDGQSLSFKVTT---T  229 (256)
T ss_pred             cccCC-CcEEEEcC---CccEEEEEEEEeCCCccEEEEEEecCC-CCeeECcccccceeEecCCCCCCCEEEEEEE---c
Confidence            99999 99999984   489999999999999999999999875 5899999999999999987755 99999987   7


Q ss_pred             CCeEEEEccccCCCCCCCcEEecCccc
Q 029804          142 DGKWIWAKNVLPADWKPGMIYNSGVQI  168 (187)
Q Consensus       142 ~G~~iv~~~vip~~w~~G~~y~t~vqf  168 (187)
                      +|+++++.||||++|++|++|++.+||
T Consensus       230 ~G~~~~~~~viPa~W~~G~ty~s~vqf  256 (256)
T PLN00193        230 DGQTRFFLNVVPANWGFGQTFSSSVQF  256 (256)
T ss_pred             CCeEEEECceeCCCCCCCCeEecCccC
Confidence            899999999999999999999999998

>PLN00050 expansin A; Provisional

Probab=100.00  E-value=9.2e-48  Score=325.18  Aligned_cols=152  Identities=28%  Similarity=0.563  Sum_probs=139.6

Q ss_pred             CeeCC-CCCCcCCCcEEEEecCCCC--------------CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccc
Q 029804            1 MRCKN-PTLCSGRGTRVILTDLNHS--------------NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEY   65 (187)
Q Consensus         1 v~C~~-~~~C~~~~v~V~vtD~Cp~--------------~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~   65 (187)
                      |||.+ +.+|.+++|+|+|||+||+              ++.|||||++||.+||.       +++|+|+|+||||||.+
T Consensus        80 V~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~  152 (247)
T PLN00050         80 IKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRK  152 (247)
T ss_pred             EEcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcC
Confidence            68865 4589988999999999995              57999999999999999       89999999999999999


Q ss_pred             cCCcEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCCCCc-ceEEEEEEEeCCCCe
Q 029804           66 KNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSGYDGK  144 (187)
Q Consensus        66 ~g~ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~l~g-PlsvRvt~t~~~~G~  144 (187)
                      +| ||+|+|+++   +||++++|.|++|+++|++|+||+++ +.|++|+|+|||+|+++.++.+ ||+||||+   .+|+
T Consensus       153 ~G-~i~f~v~g~---sy~~~vlv~nv~G~gdi~~V~ikg~~-~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~---~~G~  224 (247)
T PLN00050        153 SG-GIRFTINGH---SYFNLVLITNVGGAGDIVAVSIKGSK-SNWQAMSRNWGQNWQSNSYLNGQALSFKVTT---SDGR  224 (247)
T ss_pred             CC-CeEEEEcCC---ceeEEEEEEEcCCCccEEEEEEecCC-CCeeECccccCceeEccCCCCCCcEEEEEEe---cCCc
Confidence            99 999999863   59999999999999999999999864 5899999999999999887755 99999987   7899


Q ss_pred             EEEEccccCCCCCCCcEEecCccc
Q 029804          145 WIWAKNVLPADWKPGMIYNSGVQI  168 (187)
Q Consensus       145 ~iv~~~vip~~w~~G~~y~t~vqf  168 (187)
                      ++++.||||++|++|++|++. ||
T Consensus       225 ~~~~~~V~Pa~W~~G~ty~~~-~f  247 (247)
T PLN00050        225 TVISNNAAPSNWAFGQTYTGM-QF  247 (247)
T ss_pred             EEEECceeCCCCCCCCeEecC-cC
Confidence            999999999999999999994 87

>PLN00115 pollen allergen group 3; Provisional

Probab=99.96  E-value=8.1e-29  Score=188.78  Aligned_cols=95  Identities=20%  Similarity=0.527  Sum_probs=85.6

Q ss_pred             eccccCCcEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeE-EcccCCCCeeeeCC--CCCcceEEEEEEE
Q 029804           62 PCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWG-YMSRNYGAVWDTSR--VPNGALQFRFVVT  138 (187)
Q Consensus        62 ~C~~~g~ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~-~m~r~~ga~W~~~~--~l~gPlsvRvt~t  138 (187)
                      .|.   .+|+|+|++||+ +|||++++ |    ++|.+||||++|+..|+ +|+|+||++|+++.  +|+|||+||+|+ 
T Consensus        21 ~~g---~~v~F~V~~gSn-p~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~-   90 (118)
T PLN00115         21 SCA---TEVTFKVGKGSS-STSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLV-   90 (118)
T ss_pred             hcC---CceEEEECCCCC-cceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEEE-
Confidence            475   489999999995 99997765 4    36999999999878999 99999999999864  789999999997 


Q ss_pred             eCCCCeEEEEccccCCCCCCCcEEecCccc
Q 029804          139 SGYDGKWIWAKNVLPADWKPGMIYNSGVQI  168 (187)
Q Consensus       139 ~~~~G~~iv~~~vip~~w~~G~~y~t~vqf  168 (187)
                        .+|++++++||||++|++|++|++++||
T Consensus        91 --~~G~~~va~nViPa~Wk~G~tY~s~vq~  118 (118)
T PLN00115         91 --KGGGYRVVDDVIPESFKAGSVYKTGIQV  118 (118)
T ss_pred             --eCCCEEEECceECCCCCCCCEEeccccC
Confidence              6899999999999999999999999997

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []

Probab=99.95  E-value=1.4e-27  Score=171.51  Aligned_cols=80  Identities=43%  Similarity=0.717  Sum_probs=68.1

Q ss_pred             EEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeC-CCCCcceEEEEEEEeCCC-CeEEE
Q 029804           70 LAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS-RVPNGALQFRFVVTSGYD-GKWIW  147 (187)
Q Consensus        70 i~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~-~~l~gPlsvRvt~t~~~~-G~~iv  147 (187)
                      |+|+|+++| ++|||+|+|.|++|+++|++||||++++.+|++|+|+|||+|+++ +++++||+||||+   .+ |++++
T Consensus         1 v~f~V~~gS-~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rvts---~~~G~~vv   76 (82)
T PF01357_consen    1 VRFTVKGGS-NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRVTS---GDSGQTVV   76 (82)
T ss_dssp             EEEEE-TT--BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEEEE---TTTSEEEE
T ss_pred             CEEEECCCC-CCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEEEE---cCCCeEEE
Confidence            689999999 599999999999999999999999999888999999999999998 7889999999986   56 99999


Q ss_pred             EccccC
Q 029804          148 AKNVLP  153 (187)
Q Consensus       148 ~~~vip  153 (187)
                      ++||||
T Consensus        77 ~~nViP   82 (82)
T PF01357_consen   77 ADNVIP   82 (82)
T ss_dssp             EEEEE-
T ss_pred             EecccC
Confidence            999998

They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]

Probab=99.90  E-value=4e-23  Score=165.99  Aligned_cols=140  Identities=24%  Similarity=0.343  Sum_probs=118.7

Q ss_pred             CcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccccCCcEEEEEecCCCCCcEEEEEEEEe
Q 029804           13 GTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQ   91 (187)
Q Consensus        13 ~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~~g~ni~~~v~~gS~~~~w~av~v~n~   91 (187)
                      .++|-|||.-|+ .++.||||+.||.+|++       .+.|.|+|+||.|+-+..| |+.++|||||+ .||.++||+|+
T Consensus        88 ~TTVYVTDlYPegasGaLDLSpNAFakIGn-------m~qGrIpvqWrvv~aPvtG-N~~YRiKeGSs-~WWAAIQVRnH  158 (232)
T COG4305          88 KTTVYVTDLYPEGASGALDLSPNAFAKIGN-------MKQGRIPVQWRVVKAPVTG-NFTYRIKEGSS-RWWAAIQVRNH  158 (232)
T ss_pred             ceEEEEecccccccccccccChHHHhhhcc-------hhcCccceeEEEecccccc-cEEEEEecCCc-cceeeeeeecc
Confidence            479999999998 57999999999999999       9999999999999999999 99999999997 99999999998


Q ss_pred             CCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCCCCcceEEEEEEEeCCCCeEEEEccccCCCCCC--CcEEe--cCcc
Q 029804           92 GGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKP--GMIYN--SGVQ  167 (187)
Q Consensus        92 ~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~l~gPlsvRvt~t~~~~G~~iv~~~vip~~w~~--G~~y~--t~vq  167 (187)
                      .  .+|.++|+.++|  .|..|....+|.|.-.+.-.+||++|+|+   .-|+.++-.  +|.--+.  -+.|.  ..+|
T Consensus       159 ~--yPV~KlE~~qdg--~WinlpK~dYNhFVgT~LG~~pL~~RmTD---IRG~~l~Dt--lP~Lpk~asSKaY~V~G~VQ  229 (232)
T COG4305         159 K--YPVMKLEYEQDG--KWINLPKMDYNHFVGTNLGTGPLKVRMTD---IRGKVLKDT--LPKLPKSASSKAYTVPGHVQ  229 (232)
T ss_pred             c--CceEEEEEecCC--eEeeccccccceeeccccCCCceEEEEee---cccceeecc--cccccccccCCceeecceee
Confidence            7  789999999864  89999999887665555568999999998   889887754  5533222  33343  5678


Q ss_pred             ccc
Q 029804          168 ITD  170 (187)
Q Consensus       168 f~~  170 (187)
                      |++
T Consensus       230 FsE  232 (232)
T COG4305         230 FSE  232 (232)
T ss_pred             cCC
Confidence            863

>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Probab=99.53  E-value=9.5e-15  Score=106.10  Aligned_cols=51  Identities=27%  Similarity=0.529  Sum_probs=45.1

Q ss_pred             CeeC-CCCCCcCC-CcEEEEecCCCC--------------CCCceecCHHHHHHhhcCCCCcccccccEEEEEE
Q 029804            1 MRCK-NPTLCSGR-GTRVILTDLNHS--------------NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEY   58 (187)
Q Consensus         1 v~C~-~~~~C~~~-~v~V~vtD~Cp~--------------~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~y   58 (187)
                      |||. ++++|.++ +|+|+|||+||.              ++.|||||++||.+||.       ++.|+|+|+|
T Consensus        21 v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~-------~~~Gvi~v~y   87 (87)
T smart00837       21 IMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ-------YKAGIVPVKY   87 (87)
T ss_pred             EEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh-------hcCCEEeeEC
Confidence            5785 56789875 799999999995              47899999999999999       8999999997

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.

>PLN03024 Putative EG45-like domain containing protein 1; Provisional

Probab=99.33  E-value=1.9e-12  Score=99.90  Aligned_cols=52  Identities=27%  Similarity=0.606  Sum_probs=45.8

Q ss_pred             CeeCCC-----CCCcCCCcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEE
Q 029804            1 MRCKNP-----TLCSGRGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYK   59 (187)
Q Consensus         1 v~C~~~-----~~C~~~~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yr   59 (187)
                      |||.++     .+|.+.+|+|+|||.||+ ...|||||++||.+||+       +++|+|+|+|.
T Consensus        67 V~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~-------~~aG~v~V~y~  124 (125)
T PLN03024         67 VKCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIAN-------PVAGIINIDYI  124 (125)
T ss_pred             EEECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcC-------ccCCEEEEEEe
Confidence            578654     489988999999999994 56799999999999999       88999999996

>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures

Probab=99.21  E-value=9.1e-12  Score=87.94  Aligned_cols=43  Identities=28%  Similarity=0.448  Sum_probs=39.2

Q ss_pred             CcC--CCcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEE
Q 029804            9 CSG--RGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEY   58 (187)
Q Consensus         9 C~~--~~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~y   58 (187)
                      |..  .+|+|+|+|.||+ +..|||||+.||.+||.       ++.|+|+|+|
T Consensus        33 ~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~-------~~~G~i~V~w   78 (78)
T PF03330_consen   33 CKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALAD-------PDAGVIPVEW   78 (78)
T ss_dssp             BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBS-------TTCSSEEEEE
T ss_pred             EEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCC-------CCceEEEEEC
Confidence            776  7899999999996 78999999999999999       8999999998

They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.

>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds

Probab=97.35  E-value=0.00014  Score=55.23  Aligned_cols=46  Identities=20%  Similarity=0.341  Sum_probs=34.2

Q ss_pred             CcEEEEecCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEec
Q 029804           13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPC   63 (187)
Q Consensus        13 ~v~V~vtD~Cp~~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C   63 (187)
                      .++|.|+|+|+.+  +|||+..+|.+|-..|   +=...|.+.|.|..|.|
T Consensus        74 ~~~~RIVDqCsnG--GLDld~~vF~~iDtdG---~G~~~Ghl~V~y~fV~C  119 (119)
T PF00967_consen   74 QVTVRIVDQCSNG--GLDLDPTVFNQIDTDG---QGYAQGHLIVDYEFVDC  119 (119)
T ss_dssp             EEEEEEEEE-SSS--SEES-SSSHHHH-SSS---HHHHHTEEEEEEEEE--
T ss_pred             EEEEEEEEcCCCC--CcccChhHHhhhccCC---cccccceEEEEEEEEcC
Confidence            4788899999876  9999999999996522   11578999999999998

It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.

>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]

Probab=96.33  E-value=0.008  Score=50.96  Aligned_cols=47  Identities=21%  Similarity=0.193  Sum_probs=41.9

Q ss_pred             CCCcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEecc
Q 029804           11 GRGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCE   64 (187)
Q Consensus        11 ~~~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~   64 (187)
                      +.+|+|.|.|.+|. ..-.+|||..|+.+|+.       .+.|+.+|..+++.+.
T Consensus       131 grsvvVRINDRGPf~~gRiIDlS~aAA~~l~~-------~~~G~a~V~i~~l~~~  178 (233)
T COG0797         131 GRSVVVRINDRGPFVSGRIIDLSKAAADKLGM-------IRSGVAKVRIEVLGVA  178 (233)
T ss_pred             CcEEEEEEeCCCCCCCCcEeEcCHHHHHHhCC-------ccCceEEEEEEEeccc
Confidence            35699999999997 45689999999999998       8999999999999875

>TIGR00413 rlpA rare lipoprotein A

Probab=95.82  E-value=0.024  Score=47.38  Aligned_cols=47  Identities=17%  Similarity=0.110  Sum_probs=41.8

Q ss_pred             CCcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccc
Q 029804           12 RGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEY   65 (187)
Q Consensus        12 ~~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~   65 (187)
                      ..|+|.|.|.+|. +.--+|||..|+.+|+.       ...|+.+|+.+.+....
T Consensus        48 rsviVrVnDRGPf~~gRiIDLS~aAA~~Lg~-------~~~G~a~V~vevl~~~~   95 (208)
T TIGR00413        48 RSVIVRINDRGPFSDDRIIDLSHAAAREIGL-------ISRGVGQVRIEVLHVAK   95 (208)
T ss_pred             CEEEEEEeCCCCCCCCCEEECCHHHHHHcCC-------CcCceEEEEEEEEecCC
Confidence            4689999999997 56689999999999998       89999999999998755

This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.

>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family

Probab=93.29  E-value=0.16  Score=39.01  Aligned_cols=43  Identities=35%  Similarity=0.484  Sum_probs=29.1

Q ss_pred             CcEEEEecCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEe
Q 029804           13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVP   62 (187)
Q Consensus        13 ~v~V~vtD~Cp~~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~   62 (187)
                      +|.|+..|.-.   ..|+|+.+||..|.. |++   ...|.|+++|++|+
T Consensus        71 si~vlaID~a~---~gfnis~~A~n~LT~-g~a---~~lG~V~a~~~qV~  113 (119)
T PF07249_consen   71 SIYVLAIDHAG---GGFNISLDAMNDLTN-GQA---VELGRVDATYTQVD  113 (119)
T ss_dssp             EEEEEEEEE-S---SSEEE-HHHHHHHHT-S-C---CCC-EEE-EEEEE-
T ss_pred             EEEEEEEecCC---CcccchHHHHHHhcC-Ccc---cceeEEEEEEEEcC
Confidence            46777777643   469999999999987 333   34699999999996

It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.

>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT)

Probab=89.11  E-value=1.5  Score=33.95  Aligned_cols=24  Identities=17%  Similarity=0.400  Sum_probs=17.5

Q ss_pred             CCCc-ceEEEEEEEcCCCCeEEccc
Q 029804           92 GGQT-EMVAMDVAQVGSSNWGYMSR  115 (187)
Q Consensus        92 ~G~g-~I~~VeVk~~g~~~W~~m~r  115 (187)
                      +|.+ .|.+|||+.+++.+|++...
T Consensus        37 ~g~g~~I~rVEVS~DgG~tW~~A~l   61 (131)
T PF03404_consen   37 SGGGRGIARVEVSTDGGKTWQEATL   61 (131)
T ss_dssp             -STT--EEEEEEESSTTSSEEE-EE
T ss_pred             eCCCcceEEEEEEeCCCCCcEEeEe
Confidence            3445 89999999999889997544

MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....

>PRK10672 rare lipoprotein A; Provisional

Probab=89.06  E-value=0.88  Score=41.10  Aligned_cols=44  Identities=20%  Similarity=0.049  Sum_probs=35.8

Q ss_pred             CCCcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEE
Q 029804           11 GRGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRV   61 (187)
Q Consensus        11 ~~~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV   61 (187)
                      +..|+|.|.|.+|. +.--+|||..|+.+|+.       ...+.|.|++-.|
T Consensus       127 grsvvVrVnDRGP~~~gRiiDLS~aAA~~Lg~-------~~~~~V~ve~i~v  171 (361)
T PRK10672        127 GRMIVVRINDRGPYGPGRVIDLSRAAADRLNT-------SNNTKVRIDPIIV  171 (361)
T ss_pred             CcEEEEEEeCCCCCCCCCeeEcCHHHHHHhCC-------CCCceEEEEEEee
Confidence            34689999999997 55688999999999997       5567777777666

>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain

Probab=84.24  E-value=2.3  Score=37.48  Aligned_cols=46  Identities=20%  Similarity=0.343  Sum_probs=29.3

Q ss_pred             CCCcceEEEEEEEcCCCCeEEcccCCCC-------eeeeC-CCCCc--ceEEEEEE
Q 029804           92 GGQTEMVAMDVAQVGSSNWGYMSRNYGA-------VWDTS-RVPNG--ALQFRFVV  137 (187)
Q Consensus        92 ~G~g~I~~VeVk~~g~~~W~~m~r~~ga-------~W~~~-~~l~g--PlsvRvt~  137 (187)
                      +|...|++|||+.+|+.+|++..-....       .|++. .+..|  -+.+|.++
T Consensus       233 ~g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D  288 (317)
T cd02110         233 SGGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATD  288 (317)
T ss_pred             cCCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEEC
Confidence            3445799999999998899976543211       44444 22245  46666665

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
2hcz_X	245	Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans		1e-23
1n10_A	241	Crystal Structure Of Phl P 1, A Major Timothy Grass		3e-18

>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 7/172 (4%)
Query: 1   MRCKNPTLCSGRGTRVILTDLNHSN--QTDFVISSRAFMALSNQGKGQDILKLGVVDVEY 58
           +RCK    CSG    V +TD+N+       F +S +AF +L+  G    I   G++DVE+
Sbjct: 76  VRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEF 135
Query: 59  KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYG 118
           +RV C+Y      V   E    PNYLAV V Y     ++V M++    S+ W  M  ++G
Sbjct: 136 RRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWG 195
Query: 119 AVW--DTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQI 168
           A+W  DT++   G    R    S   GK + AK+V+PA+W+P  +Y S VQ 
Sbjct: 196 AIWRMDTAKALKGPFSIRLTSES---GKKVIAKDVIPANWRPDAVYTSNVQF 244

>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 1   MRCKNPTLCSGRGTRVILTDLNHSN--QTDFVISSRAFMALSNQGKGQDILKLGVVDVEY 58
           ++C  P  CSG    V +TD N        F +S  AF A++ +G  Q +   G +++++
Sbjct: 76  IKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQF 135
Query: 59  KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYG 118
           +RV C+Y          E    PNYLA+ V Y  G  ++VA+D+ + G   W  +  ++G
Sbjct: 136 RRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWG 195
Query: 119 AVW--DTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNS 164
           A+W  DT     G    R+    G   +   A++V+P  WK    Y S
Sbjct: 196 AIWRIDTPDKLTGPFTVRYTTEGGTKTE---AEDVIPEGWKADTSYES 240

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	5e-40
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	9e-39
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	7e-30
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	8e-30
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	7e-25
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	3e-19

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245

 Score =  135 bits (340), Expect = 5e-40
 Identities = 60/171 (35%), Positives = 89/171 (52%), Gaps = 7/171 (4%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEY 58
           +RCK    CSG    V +TD+N+       F +S +AF +L+  G    I   G++DVE+
Sbjct: 76  VRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEF 135

Query: 59  KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYG 118
           +RV C+Y      V   E    PNYLAV V Y     ++V M++    S+ W  M  ++G
Sbjct: 136 RRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWG 195

Query: 119 AVW--DTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQ 167
           A+W  DT++   G    R        GK + AK+V+PA+W+P  +Y S VQ
Sbjct: 196 AIWRMDTAKALKGPFSIRLTSE---SGKKVIAKDVIPANWRPDAVYTSNVQ 243

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241

 Score =  131 bits (331), Expect = 9e-39
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEY 58
           ++C  P  CSG    V +TD N        F +S  AF A++ +G  Q +   G +++++
Sbjct: 76  IKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQF 135

Query: 59  KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYG 118
           +RV C+Y          E    PNYLA+ V Y  G  ++VA+D+ + G   W  +  ++G
Sbjct: 136 RRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWG 195

Query: 119 AVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNS 164
           A+W           F    T+   G    A++V+P  WK    Y S
Sbjct: 196 AIWRIDTPDKLTGPFTVRYTTE-GGTKTEAEDVIPEGWKADTSYES 240

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108

 Score =  104 bits (262), Expect = 7e-30
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 11/110 (10%)

Query: 58  YKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNY 117
           +           +   V++ S  P  L + + Y      +  +++ Q GS  W  +++  
Sbjct: 7   HHHGSA----VQVTFTVQKGS-DPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK- 60

Query: 118 GAVW--DTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSG 165
           G VW   +S+   G   FRF+      G       V+P  +  G  Y   
Sbjct: 61  GNVWEVKSSKPLVGPFNFRFMSK---GGMRNVFDEVIPTAFSIGKTYKPE 107

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100

 Score =  104 bits (261), Expect = 8e-30
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 68  QNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSR 125
             +   V++ S  P  L + + Y      +  +++ Q GS  W  +++  G VW   +S+
Sbjct: 2   VQVTFTVQKGS-DPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSSK 59

Query: 126 VPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQ 167
              G   FRF+      G       V+P  +  G  Y    Q
Sbjct: 60  PLVGPFNFRFMSK---GGMRNVFDEVIPTAFSIGKTYKPEEQ 98

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96

 Score = 91.8 bits (228), Expect = 7e-25
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 69  NLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRV 126
            +   VE+ S    +LAV V Y+G    M  +++ + GS  W  M++  G VW  D+   
Sbjct: 3   KVTFTVEKGS-NEKHLAVLVKYEGD--TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEP 59

Query: 127 PNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSG 165
             G   FRF+      G      +V+P  +  G  Y   
Sbjct: 60  LQGPFNFRFLTE---KGMKNVFDDVVPEKYTIGATYAPE 95

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208

 Score = 80.7 bits (199), Expect = 3e-19
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 9   CSGRGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKN 67
                T V +TDL     +    +S  AF  + N   G        ++++++ V      
Sbjct: 60  GPKGKTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDG-------KINIKWRVVKAPITG 112

Query: 68  QNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVP 127
            N   R++E S    + A++V  +  +  ++ M+        W  M +     + ++ + 
Sbjct: 113 -NFTYRIKEGS-SRWWAAIQV--RNHKYPVMKMEYE--KDGKWINMEKMDYNHFVSTNLG 166

Query: 128 NGALQFRFVVTSGYDGKWIWAKNVL--PADWKPGMIYNSGVQ 167
            G+L+ R  +T    GK +         +           VQ
Sbjct: 167 TGSLKVR--MTDI-RGKVVKDTIPKLPESGTSKAYTVPGHVQ 205

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	100.0
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	100.0
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	100.0
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	100.0
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	99.97
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	99.96
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	99.3
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	99.01
4avr_A	95	PA4485; unknown function, GRAM-negative bacteria,	97.92
3sul_A	122	Cerato-platanin-like protein; double PSI beta barr	90.58
3suj_A	127	Cerato-platanin 1; double PSI beta barrel, unknown	90.34
3suk_A	125	Cerato-platanin-like protein; double PSI beta barr	89.77
3m3g_A	120	EPL1 protein; fungal, plant defense, fungus, polys	87.62
2kqa_A	129	Cerato-platanin; elicitor, secreted, toxin; NMR {C	82.77

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}

Probab=100.00  E-value=4.5e-53  Score=357.09  Aligned_cols=164  Identities=35%  Similarity=0.699  Sum_probs=154.6

Q ss_pred             CeeCCCCCCcCCCcEEEEecCCCC--CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccccC-CcEEEEEecC
Q 029804            1 MRCKNPTLCSGRGTRVILTDLNHS--NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKN-QNLAVRVEES   77 (187)
Q Consensus         1 v~C~~~~~C~~~~v~V~vtD~Cp~--~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~~g-~ni~~~v~~g   77 (187)
                      |+|.++++|.+++|+|+|||+||+  ++.|||||+.||.+||.+|++++|++.|+|+|+||||+|+++| .||+|+|++|
T Consensus        76 V~c~~~~~C~~~sv~V~VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~G  155 (245)
T 2hcz_X           76 VRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKG  155 (245)
T ss_dssp             EECCSSSSBCSSCEEEEEEEECCCTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCC
T ss_pred             EEeCCCCccCCCCEEEEEEeccCCCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCC
Confidence            588887899998999999999987  7899999999999999999999999999999999999999983 4799999999


Q ss_pred             CCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCC--CCcceEEEEEEEeCCCCeEEEEccccCCC
Q 029804           78 SQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRV--PNGALQFRFVVTSGYDGKWIWAKNVLPAD  155 (187)
Q Consensus        78 S~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~--l~gPlsvRvt~t~~~~G~~iv~~~vip~~  155 (187)
                      |+ +||++|+|.|++|+++|++||||+++++.|++|+|+|||+|+++..  |++||+||||+   .+|++|++.||||++
T Consensus       156 s~-~~~~avlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~gpls~RvT~---~~G~~v~~~nViP~~  231 (245)
T 2hcz_X          156 CN-PNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTS---ESGKKVIAKDVIPAN  231 (245)
T ss_dssp             CS-SSCCCEEEECCCTTCCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCSSCCEEEEE---TTSCEEEESCSCCSS
T ss_pred             CC-cceEEEEEEecCCCCCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCCCEEEEEEE---eCCcEEEEeeeecCC
Confidence            95 9999999999999999999999998777999999999999999864  78999999998   899999999999999


Q ss_pred             CCCCcEEecCccc
Q 029804          156 WKPGMIYNSGVQI  168 (187)
Q Consensus       156 w~~G~~y~t~vqf  168 (187)
                      |++|++|++++||
T Consensus       232 w~~g~ty~~~~qf  244 (245)
T 2hcz_X          232 WRPDAVYTSNVQF  244 (245)
T ss_dssp             CCTTCEEECSCCC
T ss_pred             CCCCCEEeCcccc
Confidence            9999999999999

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3

Probab=100.00  E-value=7.6e-52  Score=348.80  Aligned_cols=161  Identities=31%  Similarity=0.646  Sum_probs=150.4

Q ss_pred             CeeCCCCCCcCCCcEEEEecCCCC--CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccccC-CcEEEEEecC
Q 029804            1 MRCKNPTLCSGRGTRVILTDLNHS--NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKN-QNLAVRVEES   77 (187)
Q Consensus         1 v~C~~~~~C~~~~v~V~vtD~Cp~--~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~~g-~ni~~~v~~g   77 (187)
                      |+|.++++|++++|+|+|||+|++  ++.|||||+.||.+||.+|++++|++.|+|+|+||||+|+++| .||+|+|++|
T Consensus        76 V~c~~~~~C~~~~v~V~VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~G  155 (241)
T 1n10_A           76 IKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKG  155 (241)
T ss_dssp             EEECSSTTBCSCCEEEEEEEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTT
T ss_pred             EEeCCCCccCCCCEEEEEeEecCCCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCCCCCCCceEEEEcCC
Confidence            588877889999999999999976  6899999999999999999999999999999999999999984 5899999999


Q ss_pred             CCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCC--CCcceEEEEEEEeCCCCeEEEEccccCCC
Q 029804           78 SQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRV--PNGALQFRFVVTSGYDGKWIWAKNVLPAD  155 (187)
Q Consensus        78 S~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~--l~gPlsvRvt~t~~~~G~~iv~~~vip~~  155 (187)
                      |+ +||++|+|.|++|.++|++||||+++++.|++|+|+|||+|+++..  |++||+||||+   .+|++|+++||||++
T Consensus       156 s~-~~~~~vlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~~~~~~~l~gpls~RvT~---~~G~~v~~~nViP~~  231 (241)
T 1n10_A          156 SN-PNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTT---EGGTKTEAEDVIPEG  231 (241)
T ss_dssp             CB-TTEEEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCSCEEEEEEE---SSSCEEEEEEEECSS
T ss_pred             CC-cceEEEEEEecCCCCCEEEEEEEeCCCCCeEECccCcCcEEEeCCCCCCCCCEEEEEEE---eCCcEEEEccccCCC
Confidence            95 9999999999999999999999998777999999999999999864  78999999998   899999999999999


Q ss_pred             CCCCcEEecC
Q 029804          156 WKPGMIYNSG  165 (187)
Q Consensus       156 w~~G~~y~t~  165 (187)
                      |++|++|+++
T Consensus       232 w~~g~ty~~~  241 (241)
T 1n10_A          232 WKADTSYESK  241 (241)
T ss_dssp             CCSSEEEEC-
T ss_pred             CCCCCEEeCC
Confidence            9999999873

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A

Probab=100.00  E-value=4e-42  Score=283.94  Aligned_cols=141  Identities=21%  Similarity=0.323  Sum_probs=130.1

Q ss_pred             CCcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccccCCcEEEEEecCCCCCcEEEEEEEE
Q 029804           12 RGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLY   90 (187)
Q Consensus        12 ~~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~~g~ni~~~v~~gS~~~~w~av~v~n   90 (187)
                      ++|+|+|||+||+ +..|||||+.||.+||.       ++.|+++|+||+|+|+++| +|+|+|++||+ +||++|||.|
T Consensus        63 gsv~V~v~D~CP~C~~~~~DLS~~aF~~la~-------~~~G~i~v~~~~V~C~~~G-~i~f~v~~Gs~-~~~~~v~v~n  133 (208)
T 3d30_A           63 GKTTVYVTDLYPEGARGALDLSPNAFRKIGN-------MKDGKINIKWRVVKAPITG-NFTYRIKEGSS-RWWAAIQVRN  133 (208)
T ss_dssp             EEEEEEEEEECTTCCTTCEEECHHHHHHHSC-------GGGSSEEEEEEEECCCCCS-CCEEEECTTCS-SSEEEEEEES
T ss_pred             CcEEEEEEECCCCCCCCeEECCHHHHHHhcc-------cCCCEEEEEEEEeCCCCCC-ceeEEEcCCCC-CceEEEEEEe
Confidence            4599999999986 78999999999999998       8999999999999999999 99999999995 9999999999


Q ss_pred             eCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCCCCcceEEEEEEEeCCCCeEEEEccccCCCCCC----CcEEecCc
Q 029804           91 QGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKP----GMIYNSGV  166 (187)
Q Consensus        91 ~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~l~gPlsvRvt~t~~~~G~~iv~~~vip~~w~~----G~~y~t~v  166 (187)
                      ++|  +|++|||+++  +.|++|+|+|++.|..+.++.+||+||||+   .+|++|  .++||++|++    +.+|++++
T Consensus       134 ~~g--~v~~v~i~~~--~~W~~m~r~~~n~~~~~~~~~~pls~rvT~---~~G~~v--~~vip~~w~~~~~~~~~~~~~~  204 (208)
T 3d30_A          134 HKY--PVMKMEYEKD--GKWINMEKMDYNHFVSTNLGTGSLKVRMTD---IRGKVV--KDTIPKLPESGTSKAYTVPGHV  204 (208)
T ss_dssp             CSS--CEEEEEEEET--TEEEEEEECTTSCEEEECCCSSSEEEEEEE---TTCCEE--EEEECCCCSSCCSSCEEEECCC
T ss_pred             cCC--CEEEEEEecC--CcEEEccccccceeecCCCCCCCEEEEEEE---CCCCEE--EEEECCCCccCcccceEEeCcC
Confidence            986  8999999986  489999999988777666678999999997   899999  7899999997    89999999


Q ss_pred             cccc
Q 029804          167 QITD  170 (187)
Q Consensus       167 qf~~  170 (187)
                      ||++
T Consensus       205 Qf~~  208 (208)
T 3d30_A          205 QFPE  208 (208)
T ss_dssp             CCCC
T ss_pred             ccCC
Confidence            9984

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A

Probab=100.00  E-value=9e-34  Score=209.60  Aligned_cols=96  Identities=23%  Similarity=0.467  Sum_probs=90.8

Q ss_pred             CcEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCC--CCCcceEEEEEEEeCCCCeE
Q 029804           68 QNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSR--VPNGALQFRFVVTSGYDGKW  145 (187)
Q Consensus        68 ~ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~--~l~gPlsvRvt~t~~~~G~~  145 (187)
                      .+|+|+|++||+ +||++|+|.|++|+|||.+||||+++++.|++|+| ||++|++++  +|+|||+||||+   .+|++
T Consensus         2 ~~i~F~V~~gs~-~~~l~vlv~nv~G~gdI~~V~ik~s~t~~W~~M~r-wGa~W~~~s~~~l~GplSfRvt~---~~G~~   76 (100)
T 3ft1_A            2 VQVTFTVQKGSD-PKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTK-KGNVWEVKSSKPLVGPFNFRFMS---KGGMR   76 (100)
T ss_dssp             BEEEEEECTTCB-TTEEEEEEEEECTTCCEEEEEEECTTCCCCEECEE-ETTEEEEECSSCCCSSEEEEEEE---TTCCE
T ss_pred             CCEEEEEecCCC-cceEEEEEEEcCCCccEEEEEEEeCCCCCeEEecc-cCCEeEeCCCCCCCCCEEEEEEE---cCCcE
Confidence            389999999995 99999999999999999999999987668999999 999999986  789999999997   79999


Q ss_pred             EEEccccCCCCCCCcEEecCccc
Q 029804          146 IWAKNVLPADWKPGMIYNSGVQI  168 (187)
Q Consensus       146 iv~~~vip~~w~~G~~y~t~vqf  168 (187)
                      +++.||||++|++|++|++++||
T Consensus        77 ~v~~nViPa~W~~G~ty~s~vq~   99 (100)
T 3ft1_A           77 NVFDEVIPTAFSIGKTYKPEEQE   99 (100)
T ss_dssp             EEEEEEECTTCCTTCEECCCCBC
T ss_pred             EEECeEeCCCCCCCcEEeccccc
Confidence            99999999999999999999997

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}

Probab=99.97  E-value=1.5e-31  Score=199.94  Aligned_cols=96  Identities=22%  Similarity=0.476  Sum_probs=89.5

Q ss_pred             cCCcEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCC--CCCcceEEEEEEEeCCCC
Q 029804           66 KNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSR--VPNGALQFRFVVTSGYDG  143 (187)
Q Consensus        66 ~g~ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~--~l~gPlsvRvt~t~~~~G  143 (187)
                      .|.||+|+|+++|+ +|||+|+|.|++|+|||.+||||+.++..|++|+|+ |++|+++.  +|+|||+||||+   .+|
T Consensus        11 ~g~~v~f~V~~~sn-p~~l~VlV~nv~G~GdI~~V~Ik~~~~~~W~~M~rn-Ga~W~~~s~~~L~GplSfRvtt---s~G   85 (108)
T 2jnz_A           11 SAVQVTFTVQKGSD-PKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSSKPLVGPFNFRFMS---KGG   85 (108)
T ss_dssp             CCCEEEEEECTTCC-SSEEEEEEEEEBTTBCEEEEEEECTTCCCCEECEEE-TTEEEEECSSCCCSSEEEEEEE---TTT
T ss_pred             CCccEEEEEecCCC-ccEEEEEEEEeCCCCCEEEEEEEeCCCCcEeEcccc-CCEeEeCCCCCCCCCEEEEEEE---cCC
Confidence            46799999999995 999999999999999999999998666789999999 99999986  789999999997   899


Q ss_pred             eEEEEccccCCCCCCCcEEecCc
Q 029804          144 KWIWAKNVLPADWKPGMIYNSGV  166 (187)
Q Consensus       144 ~~iv~~~vip~~w~~G~~y~t~v  166 (187)
                      +++++.||||++|++|++|++++
T Consensus        86 ~~~va~nViPa~W~~Gqty~s~v  108 (108)
T 2jnz_A           86 MRNVFDEVIPTAFSIGKTYKPEE  108 (108)
T ss_dssp             EEEEEEEEECSSCCTTCEECCCC
T ss_pred             cEEEECeEECCCCCCCCEEeCCC
Confidence            99999999999999999999864

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A

Probab=99.96  E-value=3e-31  Score=194.80  Aligned_cols=93  Identities=28%  Similarity=0.508  Sum_probs=85.1

Q ss_pred             CcEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCC--CCCcceEEEEEEEeCCCCeE
Q 029804           68 QNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSR--VPNGALQFRFVVTSGYDGKW  145 (187)
Q Consensus        68 ~ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~--~l~gPlsvRvt~t~~~~G~~  145 (187)
                      .+|+|+|++||+ +|||+|+|.|++  |||.+||||++++..|++|+|+||++|+++.  +|+|||+||||+   .+|++
T Consensus         2 ~~i~F~V~~gs~-~~~l~vlv~nv~--gdI~~V~ik~~~~~~W~~M~r~wGa~W~~~~~~~L~GplSfRvt~---~~G~~   75 (96)
T 1bmw_A            2 PKVTFTVEKGSN-EKHLAVLVKYEG--DTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLT---EKGMK   75 (96)
T ss_dssp             CCCCCCCCTTCS-SSBCCBCCCCSS--SCCCCCEECCSSSSSCEECBCCSSSSBBCBCCSSCCCCCCBCCEE---TTTEE
T ss_pred             CCEEEEEecCCC-CceEEEEEEEeC--CCEEEEEEEECCCCcEEECccCcCceeEeCCCCCCCCCEEEEEEE---cCCcE
Confidence            379999999995 999999999998  7899999999767789999999999999987  578999999997   89999


Q ss_pred             EEEccccCCCCCCCcEEecCc
Q 029804          146 IWAKNVLPADWKPGMIYNSGV  166 (187)
Q Consensus       146 iv~~~vip~~w~~G~~y~t~v  166 (187)
                      +++.||||++|++|++|++++
T Consensus        76 ~v~~nViP~~W~~G~ty~~~~   96 (96)
T 1bmw_A           76 NVFDDVVPEKYTIGATYAPEE   96 (96)
T ss_dssp             CCBSSCSCSSCCSSSCCCC--
T ss_pred             EEEeeEeCCCCCCCCEEeCCC
Confidence            999999999999999999853

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1

Probab=99.30  E-value=1.7e-13  Score=109.90  Aligned_cols=52  Identities=8%  Similarity=0.215  Sum_probs=43.9

Q ss_pred             CCcCC-CcEEEEecCCCC----------C-----------CCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccc
Q 029804            8 LCSGR-GTRVILTDLNHS----------N-----------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEY   65 (187)
Q Consensus         8 ~C~~~-~v~V~vtD~Cp~----------~-----------~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~   65 (187)
                      +|..+ +|+|||||+||.          +           +.||||+++| .+||.       +..|+|+|+||||+|+.
T Consensus        88 ~~~~g~SI~VtaTN~CPpn~~nggWCn~pp~~~~~n~~G~~~HFDLs~pa-~~Ia~-------~~~GivpV~yrrV~C~~  159 (181)
T 1wc2_A           88 PVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLENGR-SQVTG-------MGWNNPETTWEVVNCDS  159 (181)
T ss_dssp             CCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEECTT-STTGG-------GTCSSEEEEEEEECHHH
T ss_pred             cCCCCCeEEEEEecCCCCCCCCCCccCCCcccCcccccCccccccccchH-HHhhh-------hcCCCceeEEEEEeCCC
Confidence            34443 699999999992          1           5799999999 89998       88999999999999987


Q ss_pred             cC
Q 029804           66 KN   67 (187)
Q Consensus        66 ~g   67 (187)
                      .+
T Consensus       160 ~~  161 (181)
T 1wc2_A          160 EH  161 (181)
T ss_dssp             HH
T ss_pred             CC
Confidence            44

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A

Probab=99.01  E-value=1e-10  Score=89.03  Aligned_cols=48  Identities=17%  Similarity=0.304  Sum_probs=41.1

Q ss_pred             CCcEEEEecCCCCCCCceecC-HHHHHHhhcCCCCcccccccEEEEEEEEEecc
Q 029804           12 RGTRVILTDLNHSNQTDFVIS-SRAFMALSNQGKGQDILKLGVVDVEYKRVPCE   64 (187)
Q Consensus        12 ~~v~V~vtD~Cp~~~~~fdLs-~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~   64 (187)
                      .+|+|+|+|+||.  .+|||| +.||.+|+.+|   +.+..|+++|+|++|+|+
T Consensus        76 ksV~V~VvD~CP~--ggLDLS~~~AF~~Ia~~g---~G~~~G~i~V~w~~V~C~  124 (125)
T 1bw3_A           76 AQITARIVDQCAN--GGLDLDWDTVFTKIDTNG---IGYQQGHLNVNYQFVDCR  124 (125)
T ss_dssp             EEEEEEEEECCSS--SSCCSCSSSSHHHHCSSC---HHHHHSEEEEEEEEECCC
T ss_pred             CEEEEEEEEeCCC--CCCCCCCHHHHHHHhccC---CcccCcEEEEEEEEEeCC
Confidence            4699999999997  459999 99999999732   225789999999999996

>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}

Probab=97.92  E-value=1e-05  Score=58.65  Aligned_cols=44  Identities=20%  Similarity=0.200  Sum_probs=38.8

Q ss_pred             CCCcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEE
Q 029804           11 GRGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRV   61 (187)
Q Consensus        11 ~~~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV   61 (187)
                      +.+|+|.|.|.||. +...+|||..||.+|+.       .+.|+++|+++.+
T Consensus        50 GksVvVrVnDRGP~~~griIDLS~aAa~~Lg~-------~~~G~~~V~ve~~   94 (95)
T 4avr_A           50 RRSVVVRINDRGPFRRGRIIDVSRKAAEGLGM-------IRSGVAPVRIESL   94 (95)
T ss_dssp             CCEEEEEEEECCCCSTTEEEEECHHHHHHHTC-------TTTSCEEEEEEEC
T ss_pred             CcEEEEEEccCCCCCCCCEEEeCHHHHHHhCC-------cCCCEEEEEEEEe
Confidence            45699999999997 45579999999999998       8899999999875

>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}

Probab=90.58  E-value=0.29  Score=36.64  Aligned_cols=43  Identities=30%  Similarity=0.450  Sum_probs=32.9

Q ss_pred             CcEEEEecCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEe
Q 029804           13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVP   62 (187)
Q Consensus        13 ~v~V~vtD~Cp~~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~   62 (187)
                      +|.|...|.-++   .|+|+.+||..|.. |++   ...|.|+++|++|+
T Consensus        74 si~vlaID~a~~---Gfnis~~Amn~LT~-G~a---~~lG~V~a~~~qV~  116 (122)
T 3sul_A           74 TIHVVGVDVAGN---GFNVGQRAMDDLTN-GQA---VALGNIDVTATLVD  116 (122)
T ss_dssp             EEEEEEEEECSS---SEEECHHHHHHHHT-SCH---HHHSEEEEEEEEEC
T ss_pred             EEEEEEEecCCC---ceeehHHHHHHhcC-Ccc---eecceEeEEEEEcC
Confidence            467777776543   49999999999986 322   33699999999996

>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=90.34  E-value=0.26  Score=37.16  Aligned_cols=43  Identities=26%  Similarity=0.417  Sum_probs=32.5

Q ss_pred             CcEEEEecCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEe
Q 029804           13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVP   62 (187)
Q Consensus        13 ~v~V~vtD~Cp~~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~   62 (187)
                      +|.|+..|.-++   .|+|+.+||..|.. |++   -..|.|+++|++|+
T Consensus        77 si~vlaID~a~~---Gfnis~~Amn~LT~-g~a---~~lG~V~~~~~~V~  119 (127)
T 3suj_A           77 SIYMVAIDRSAE---GFTASKQAMDDLTN-KRA---EELGTVNVDVRKVD  119 (127)
T ss_dssp             EEEEEEEEECSS---SEEECHHHHHHHHT-SCH---HHHSSEEEEEEEEC
T ss_pred             EEEEEEEecCCC---ceeecHHHHHHhcC-Ccc---ccceeEEEEEEEeC
Confidence            466666676543   49999999999986 222   34588999999996

>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=89.77  E-value=0.46  Score=35.70  Aligned_cols=43  Identities=26%  Similarity=0.451  Sum_probs=32.2

Q ss_pred             CcEEEEecCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEe
Q 029804           13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVP   62 (187)
Q Consensus        13 ~v~V~vtD~Cp~~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~   62 (187)
                      +|.|...|.-+   ..|+|+.+||..|.. |++.   ..|.|+++|++|+
T Consensus        77 si~vlaID~a~---~Gfnis~~Amn~LT~-G~a~---~lG~V~~~~~~V~  119 (125)
T 3suk_A           77 SINLVAIDHAG---NGFNVAQAAMDELTN-GNAV---ALGTIDVQSQQVA  119 (125)
T ss_dssp             EEEEEEEEECS---SSEEECHHHHHHHHT-SCHH---HHCEEEEEEEEEC
T ss_pred             EEEEEEEecCC---CceeecHHHHHHhcC-Cccc---ccceEeEEEEEcC
Confidence            35666667654   349999999999986 3322   3599999999996

>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}

Probab=87.62  E-value=0.48  Score=35.33  Aligned_cols=43  Identities=30%  Similarity=0.449  Sum_probs=33.0

Q ss_pred             CcEEEEecCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEe
Q 029804           13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVP   62 (187)
Q Consensus        13 ~v~V~vtD~Cp~~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~   62 (187)
                      +|.|+..|.-   ...|+|+.+||..|.. |++   ...|.|+++|++|+
T Consensus        72 si~vlaID~a---~~Gfnis~~A~n~LT~-G~a---~~lG~V~a~~~~V~  114 (120)
T 3m3g_A           72 TIYVLAVDHA---ASGFNIALDAMNALTG-GQA---VQLGRVSATATQVP  114 (120)
T ss_dssp             EEEEEEEEEC---SSSEEECHHHHHHHHT-SCH---HHHCEEECEEEEEC
T ss_pred             EEEEEEEecC---CCceeecHHHHHHhhC-Ccc---eeeeeEeEEEEEcC
Confidence            4677777765   3459999999999985 332   24699999999996

>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}

Probab=82.77  E-value=0.72  Score=34.79  Aligned_cols=41  Identities=24%  Similarity=0.327  Sum_probs=33.3

Q ss_pred             CcEEEEecCCCCCCCceecCHHHHHHhhcCCCCcccccccEE-EEEEEEEe
Q 029804           13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVV-DVEYKRVP   62 (187)
Q Consensus        13 ~v~V~vtD~Cp~~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii-~v~yrrV~   62 (187)
                      +|.|+..|.-+   ..|+++.+||..|...      ...|.| +++|++|+
T Consensus        79 sI~vlaID~A~---~gFnIs~~Amn~LT~G------~~lG~V~~a~~~qV~  120 (129)
T 2kqa_A           79 SIFIRGVDSGR---GGFNVNPTAFTKLVGS------TEAGRVDNVNYVQVD  120 (129)
T ss_dssp             EEEEEEEEECS---SSEEECHHHHHHHHSS------SSSCCBCSCEEEECC
T ss_pred             EEEEEEEccCC---CceeehHHHHHHhcCC------cccCcEeEEEEEEcC
Confidence            46677767655   4699999999999873      568999 99999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1n10a1	95	b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T	2e-28
d1whoa_	94	b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten	2e-24
d1n10a2	143	b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t	1e-14

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score = 99.8 bits (249), Expect = 2e-28
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 69  NLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRV 126
            +   VE+ S  PNYLA+ V Y  G  ++VA+D+ + G   W  +  ++GA+W  DT   
Sbjct: 2   KVTFHVEKGS-NPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDK 60

Query: 127 PNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNS 164
             G    R+       G    A++V+P  WK    Y S
Sbjct: 61  LTGPFTVRYTTE---GGTKTEAEDVIPEGWKADTSYES 95

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score = 89.4 bits (222), Expect = 2e-24
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 70  LAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG 129
           +   VE+ S    +LAV V Y+G    M  +++ + GS  W  M++  G VW        
Sbjct: 4   VTFTVEKGS-NEKHLAVLVKYEGD--TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPL 60

Query: 130 ALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIY 162
              F F   +   G      +V+P  +  G  Y
Sbjct: 61  QGPFNFRFLTE-KGMKNVFDDVVPEKYTIGATY 92

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score = 65.4 bits (159), Expect = 1e-14
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 1   MRCKNPTLCSGRGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEY 58
           ++C  P  CSG    V +TD N        F +S  AF A++ +G  Q +   G +++++
Sbjct: 74  IKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQF 133

Query: 59  KRVPCEYK 66
           +RV C+Y 
Sbjct: 134 RRVKCKYP 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1n10a1	95	PHL P 1 C-terminal domain {Timothy grass (Phleum p	100.0
d1whoa_	94	PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1	99.96
d1n10a2	143	Pollen allergen PHL P 1 N-terminal domain {Timothy	99.8
d1wc2a1	180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	99.53
d1bw3a_	125	Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	95.11
d2a9da1	123	Sulfite oxidase, C-terminal domain {Chicken (Gallu	86.18

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=4.9e-33  Score=202.25  Aligned_cols=93  Identities=31%  Similarity=0.646  Sum_probs=87.0

Q ss_pred             CcEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCC--CCCcceEEEEEEEeCCCCeE
Q 029804           68 QNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSR--VPNGALQFRFVVTSGYDGKW  145 (187)
Q Consensus        68 ~ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~--~l~gPlsvRvt~t~~~~G~~  145 (187)
                      ++|+|+|++||+ +|||+|+|.|++|++||.+||||+++++.|++|+|+|||+|+++.  +++|||+||||+   .+|++
T Consensus         1 t~i~F~v~~gsn-p~~lav~v~n~~g~gdI~~vevk~~g~~~W~~m~r~~ga~W~~~~~~~~~gpls~Rvt~---~~G~~   76 (95)
T d1n10a1           1 TKVTFHVEKGSN-PNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTT---EGGTK   76 (95)
T ss_dssp             CCCEEEECTTCB-TTEEEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCSCEEEEEEE---SSSCE
T ss_pred             CcEEEEECCCCC-cceEEEEEEEcCCCCcEEEEEEEeCCCCcceEEEECCCCeEEECCCCCCCcCEEEEEEE---cCCCE
Confidence            379999999996 999999999999999999999999988899999999999999865  357899999997   89999


Q ss_pred             EEEccccCCCCCCCcEEec
Q 029804          146 IWAKNVLPADWKPGMIYNS  164 (187)
Q Consensus       146 iv~~~vip~~w~~G~~y~t  164 (187)
                      +++.||||++|++|++|++
T Consensus        77 ~v~~nViP~~W~~G~tY~s   95 (95)
T d1n10a1          77 TEAEDVIPEGWKADTSYES   95 (95)
T ss_dssp             EEEEEEECSSCCSSEEEEC
T ss_pred             EEECceECCCCCCCCEEeC
Confidence            9999999999999999986

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.96  E-value=5.5e-30  Score=185.61  Aligned_cols=89  Identities=29%  Similarity=0.541  Sum_probs=82.7

Q ss_pred             cEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCC--CCCcceEEEEEEEeCCCCeEE
Q 029804           69 NLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSR--VPNGALQFRFVVTSGYDGKWI  146 (187)
Q Consensus        69 ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~--~l~gPlsvRvt~t~~~~G~~i  146 (187)
                      .|+|+|++||+ +|||+|++.|++|  +|.+|||++.++++|++|+|+|||+|+++.  ++++||+||||+   .+|+++
T Consensus         3 ~v~f~v~~GSn-p~~lav~v~~~gg--~i~~vev~~~gs~~W~~M~r~wGa~W~~~~~~~~~gplsfRvt~---~~G~~~   76 (94)
T d1whoa_           3 KVTFTVEKGSN-EKHLAVLVKYEGD--TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLT---EKGMKN   76 (94)
T ss_dssp             SEEEEECTTCB-TTEEEEEEEETTC--CEEEEEEECTTCCCCEECEECSTTEEEEECSSCCCSSEEEEEEE---TTSCEE
T ss_pred             cEEEEECCCCC-ccEEEEEEEEcCC--CEEEEEEEECCCCceeECccCcCccEEECCCCCCCccEEEEEEE---cCCCEE
Confidence            69999999996 9999999999985  799999999888899999999999998864  468899999997   899999


Q ss_pred             EEccccCCCCCCCcEEe
Q 029804          147 WAKNVLPADWKPGMIYN  163 (187)
Q Consensus       147 v~~~vip~~w~~G~~y~  163 (187)
                      ++.||||++|++|++|+
T Consensus        77 v~~nViP~~W~~G~ty~   93 (94)
T d1whoa_          77 VFDDVVPEKYTIGATYA   93 (94)
T ss_dssp             EEEEEECSSCCTTCEEC
T ss_pred             EEcceECCCCCCCCEEC
Confidence            99999999999999996

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.80  E-value=5e-21  Score=147.67  Aligned_cols=67  Identities=31%  Similarity=0.662  Sum_probs=62.3

Q ss_pred             CeeCCCCCCcCCCcEEEEecCCCC--CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccccC
Q 029804            1 MRCKNPTLCSGRGTRVILTDLNHS--NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKN   67 (187)
Q Consensus         1 v~C~~~~~C~~~~v~V~vtD~Cp~--~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~~g   67 (187)
                      |+|.++++|.+++|+|+|||.||.  +..|||||++||.+||+++.+.+|+++|+|+|+||||+|.++|
T Consensus        74 v~c~~~~~c~~~sv~V~vtd~c~~~~~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          74 IKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             EEECSSTTBCSCCEEEEEEEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             eEcCCCCcccCCCEEEEEEecccCCCCCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            588888999999999999999986  5789999999999999998888889999999999999999987

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=99.53  E-value=3.4e-17  Score=129.93  Aligned_cols=66  Identities=11%  Similarity=0.215  Sum_probs=52.6

Q ss_pred             CeeCCCCCCc-------CCCcEEEEecCCCC----------C-----------CCceecCHHHHHHhhcCCCCccccccc
Q 029804            1 MRCKNPTLCS-------GRGTRVILTDLNHS----------N-----------QTDFVISSRAFMALSNQGKGQDILKLG   52 (187)
Q Consensus         1 v~C~~~~~C~-------~~~v~V~vtD~Cp~----------~-----------~~~fdLs~~AF~~ia~~~~~~~l~~~G   52 (187)
                      |||.+...|.       +.+|+|||||+||.          +           ..||||+ .||.+||.       +..|
T Consensus        75 V~C~~~~~~~~~~~~~~g~sV~V~iTd~CP~n~~n~gWCn~p~~~~~~n~~g~~~HFDLs-~af~~ia~-------~~~G  146 (180)
T d1wc2a1          75 LTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLE-NGRSQVTG-------MGWN  146 (180)
T ss_dssp             EEEEEEECTTSCCCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEE-CTTSTTGG-------GTCS
T ss_pred             EEECCCCCCccCCCCCCCCcEEEEEEecCCCCCCCCCccCCccccccccccCcccceech-HHHHHHhh-------hcCC
Confidence            5776543332       33699999999994          1           1399997 59999999       8999


Q ss_pred             EEEEEEEEEeccccCCcEEEEEe
Q 029804           53 VVDVEYKRVPCEYKNQNLAVRVE   75 (187)
Q Consensus        53 ii~v~yrrV~C~~~g~ni~~~v~   75 (187)
                      +|+|+||||+|+..+ ++++++.
T Consensus       147 ~v~V~yrrV~C~~~g-~~~~~~~  168 (180)
T d1wc2a1         147 NPETTWEVVNCDSEH-NHDHRTP  168 (180)
T ss_dssp             SEEEEEEEECHHHHH-HHCTTSC
T ss_pred             cceeEEEEeeCCCcc-ccccccc
Confidence            999999999999988 8887655

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Barwin
domain: Barwin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=95.11  E-value=0.0038  Score=44.62  Aligned_cols=47  Identities=17%  Similarity=0.326  Sum_probs=38.0

Q ss_pred             CcEEEEecCCCCCCCceecC-HHHHHHhhcCCCCcccccccEEEEEEEEEecc
Q 029804           13 GTRVILTDLNHSNQTDFVIS-SRAFMALSNQGKGQDILKLGVVDVEYKRVPCE   64 (187)
Q Consensus        13 ~v~V~vtD~Cp~~~~~fdLs-~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~   64 (187)
                      .+++.|+|+|...  .|||. +..|.+|...|   +=...|.+.|.|..|.|.
T Consensus        77 ~~~~RiVDqCsng--GlDLD~~~vFn~iDtdG---~G~~~Ghl~V~y~fV~C~  124 (125)
T d1bw3a_          77 QITARIVDQCANG--GLDLDWDTVFTKIDTNG---IGYQQGHLNVNYQFVDCR  124 (125)
T ss_dssp             EEEEEEEECCSSS--SCCSCSSSSHHHHCSSC---HHHHHSEEEEEEEEECCC
T ss_pred             EEEEEEeecccCC--CCccccHhhhheecCCC---cccccccEEEEEEEecCC
Confidence            4899999999864  78999 67999996432   115679999999999994

>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=86.18  E-value=0.54  Score=33.13  Aligned_cols=19  Identities=32%  Similarity=0.574  Sum_probs=16.7

Q ss_pred             ceEEEEEEEcCCCCeEEcc
Q 029804           96 EMVAMDVAQVGSSNWGYMS  114 (187)
Q Consensus        96 ~I~~VeVk~~g~~~W~~m~  114 (187)
                      .|++|||+.+++.+|++..
T Consensus        35 ~I~rVEVS~DgG~tW~~A~   53 (123)
T d2a9da1          35 EVVRVDVSLDGGRTWKVAR   53 (123)
T ss_dssp             CEEEEEEESBSSSSCEECE
T ss_pred             eEEEEEEEcCCCCccEEeE
Confidence            6999999999988998754