Citrus Sinensis ID: 029822

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRLVPSENLR
Secondary Structure (PSIPRED)
cEEEEEHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
MVLLWLTtifpharplacdhplrdgcesatGSQLMLLYLAFGLMslggggirssslafgaeqlekgdgiksksESALKSYFSWYYVSVSASSMVAVTLIVYIQdnlgwkvgfGIPAAIMLLSALCFFLaspfyvkskaNTSLLSGLIQVLVASYKnrhiklsspqaaeeryhhregsvrlvpsenlr
Flexible Loop (DISEMBL)
MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEkgdgikskseSALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSspqaaeeryhhregsvrlvpsenlr
Low Complexity Region (SEG)
MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYlafglmslggggirssslAFGAEQLEKGDGIKSKSESALKsyfswyyvsvsassmvavTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRLVPSENLR
Disordered region (IsUnstruct)
*VLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAF******************LKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHI****************************
Disordered Region (DISOPRED)
MVLLWLTTIFPHARP***************GSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKG**********LKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSS******************P*****
Disordered Region (DISEMBL)
MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIK*******************LVPSENLR
Disordered Region (DISPRO)
MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEER*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRLVPSENLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q8LPL2	591	Probable peptide/nitrate	yes	no	0.989	0.313	0.481	1e-45
Q9M817	607	Probable peptide transpor	no	no	0.983	0.303	0.492	3e-45
Q9LV10	616	Probable peptide/nitrate	no	no	0.812	0.246	0.366	2e-26
Q9M9V7	587	Probable peptide/nitrate	no	no	0.887	0.282	0.348	4e-25
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.893	0.269	0.323	1e-24
Q9LYD5	481	Putative peptide/nitrate	no	no	0.716	0.278	0.435	2e-24
Q9M390	570	Peptide transporter PTR1	no	no	0.962	0.315	0.308	1e-23
Q3E8X3	559	Probable peptide/nitrate	no	no	0.828	0.277	0.347	1e-23
P46032	585	Peptide transporter PTR2	no	no	0.957	0.305	0.320	4e-23
Q9LFX9	576	Nitrate transporter 1.6 O	no	no	0.860	0.279	0.345	5e-23

>sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2

 Score =  182 bits (462), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/187 (48%), Positives = 120/187 (64%), Gaps = 2/187 (1%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           MV+LWLT + P  +P  C       C SAT SQL LLY AF L+S+G GGIR  SLAFGA
Sbjct: 109 MVVLWLTAMLPQVKPSPCVATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGA 168

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +QL+  +    K+E  L+S+F WYY S S + ++A T+IVYIQD+LGWK+GFGIPA +ML
Sbjct: 169 DQLDNKE--NPKNERVLESFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILML 226

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
           L+   F  ASP YVK   + SL +GL QV+ A+Y  R++ L     + + Y+  + S   
Sbjct: 227 LAGFLFVFASPLYVKRDVSKSLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELK 286

Query: 181 VPSENLR 187
            PS+ LR
Sbjct: 287 APSDKLR 293

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score =  181 bits (459), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/189 (49%), Positives = 124/189 (65%), Gaps = 5/189 (2%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDG--CESATGSQLMLLYLAFGLMSLGGGGIRSSSLAF 58
           MVLLWLT + P  +P  CD P   G  C S+T SQL LLY AF L+S+G GGIR  SLAF
Sbjct: 107 MVLLWLTAMLPQVKPSPCD-PTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAF 165

Query: 59  GAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAI 118
           GA+QL+  +    K+E  L+S+F WYY S + + ++A T IVYIQ++LGWK+GFG+PA +
Sbjct: 166 GADQLDNKE--NPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVL 223

Query: 119 MLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSV 178
           ML++AL F LASP YV      SL +GL Q +VA+YK R + L     + + Y+H + S 
Sbjct: 224 MLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSE 283

Query: 179 RLVPSENLR 187
              PS+ LR
Sbjct: 284 IKAPSQKLR 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 9/161 (5%)

Query: 3   LLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQ 62
           ++ LT   P   P AC       C   +G Q+  L +  G + +G GGIR  +LAFGA+Q
Sbjct: 131 VILLTAAVPQLHPAACGTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQ 190

Query: 63  LEKGDGIKSKSESA---LKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIM 119
                    KSES    + S+F+WY+ + + + ++++TL+VY+Q N+ W +G  IPA +M
Sbjct: 191 FN------PKSESGKRGIDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLM 244

Query: 120 LLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIK 160
            L+ L FF     YVK KA+ S L+G+ QV+  + K R +K
Sbjct: 245 FLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGLK 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1

 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 6/172 (3%)

Query: 2   VLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAE 61
           V + LT +     P  C   +   C   +  Q+M L  A  L+ +G GGIR  +L FGA+
Sbjct: 106 VAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGAD 165

Query: 62  QLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLL 121
           Q    D    + +  ++S+F+WY+ + + + MV++TLIVY+Q N+ W +G  IPA +MLL
Sbjct: 166 QF---DPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLL 222

Query: 122 SALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHH 173
             + FF  S  YVK KA+ S +  + +V+V + K R +K   P    E Y++
Sbjct: 223 GCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRLK---PVGPNELYNY 271

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 9/176 (5%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           ++ + LT  FP   P +C+      C      Q+ +L L    +S+G GGIR  S+ FG 
Sbjct: 137 LITITLTASFPQLHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGV 196

Query: 61  EQLEKGDGIKSKSESALK---SYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAA 117
           +Q ++      ++E  +K   S+F+WYY++ +   ++  T++VYIQD + W +GF IP  
Sbjct: 197 DQFDQ------RTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTG 250

Query: 118 IMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHH 173
           +M L+ + FF     YV  K   S+ SG+ QV+VA+ K R +KL +       Y+ 
Sbjct: 251 LMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLPAEDDGTVTYYD 306

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD5|PTR48_ARATH Putative peptide/nitrate transporter At5g11570 OS=Arabidopsis thaliana GN=At5g11570 PE=2 SV=1

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 89/140 (63%), Gaps = 6/140 (4%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           MVLLWLTTI    RP  CD  L + C+  T  + +LLY  F L ++G GG+RSS LAF A
Sbjct: 99  MVLLWLTTII---RP-ECDK-LTNVCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAA 153

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +QL+     +  + S+L++ F+WYY SV  +  ++ +L+V++Q   GW++GFG+  A M 
Sbjct: 154 DQLQPNQTSRVTT-SSLETLFNWYYFSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAMA 212

Query: 121 LSALCFFLASPFYVKSKANT 140
           LS   FF ASP+YV+ +  T
Sbjct: 213 LSVALFFAASPYYVRFQKPT 232

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 110/191 (57%), Gaps = 11/191 (5%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           M LL L+   P  +P  C+    D C   + SQ  + ++A  +++LG GGI+    +FGA
Sbjct: 110 MTLLTLSASVPGLKPGNCN---ADTCHPNS-SQTAVFFVALYMIALGTGGIKPCVSSFGA 165

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +Q ++ D  +   +S   S+F+W+Y S++  +++A T++V+IQ N+GW  GFG+P   M+
Sbjct: 166 DQFDENDENEKIKKS---SFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMV 222

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQA----AEERYHHREG 176
           ++   FF  S FY   +   S L+ + QV+VA+++   +K+   ++      +   + +G
Sbjct: 223 IAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKG 282

Query: 177 SVRLVPSENLR 187
           S +LV ++NL+
Sbjct: 283 SRKLVHTDNLK 293

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGS-QLMLLYLAFGLMSLGGGGIRSSSLAFG 59
           M +  LT   P  RP AC  P    C +     QL +L+   GL+++G GG+R  ++AFG
Sbjct: 103 MGIFALTAALPSLRPDACIDP--SNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFG 160

Query: 60  AEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIM 119
           A+Q    D    K ++ L+++F+W+Y S + + ++A+T +VYIQ N+ W +GF IP A +
Sbjct: 161 ADQF---DTSTKKGKAHLETFFNWWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACL 217

Query: 120 LLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIK 160
            LS   F +    Y+ +KA  S+ + +++V+ A+ K R +K
Sbjct: 218 ALSITTFVIGQHTYICAKAEGSVFADIVKVVTAACKKRKVK 258

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 8/187 (4%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           M  L L+   P  +P  C   + D C SAT +Q  + +    L++LG GGI+    +FGA
Sbjct: 127 MSALTLSASVPALKPAEC---IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGA 183

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +Q +  D   S+      S+F+W+Y S++  ++V+ +L+V+IQ+N GW +GFGIP   M 
Sbjct: 184 DQFDDTD---SRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMG 240

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
           L+   FF  +P Y   K   S ++ + QV+VAS++   +K+  P+ A   Y  ++ +  +
Sbjct: 241 LAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKV--PEDATLLYETQDKNSAI 298

Query: 181 VPSENLR 187
             S  + 
Sbjct: 299 AGSRKIE 305

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 98/171 (57%), Gaps = 10/171 (5%)

Query: 6   LTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEK 65
           LT   P   P  C++P  D C+     QL +L+L  G +S+G GGIR  S+ FG +Q ++
Sbjct: 105 LTACLPQLHPPPCNNPHPDECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQ 164

Query: 66  GDGIKSKSESALK---SYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLS 122
                 ++E  LK   S+F+WYY++++   + + T++VY+Q  + W +GF IP ++M  +
Sbjct: 165 ------RTEQGLKGVASFFNWYYLTLTMVLIFSHTVVVYLQ-TVSWVIGFSIPTSLMACA 217

Query: 123 ALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHH 173
            + FF+   FYV  K   S+ SG+ +V+VA+ K R +K+S      E Y+ 
Sbjct: 218 VVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKRDLKISLVDDGTEEYYE 268

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
224087732	605	predicted protein [Populus trichocarpa]	0.983	0.304	0.566	3e-51
224141763	581	predicted protein [Populus trichocarpa]	0.978	0.314	0.598	1e-49
224106908	606	predicted protein [Populus trichocarpa]	0.983	0.303	0.556	8e-49
224141761	515	predicted protein [Populus trichocarpa]	0.983	0.357	0.550	4e-48
224141759	564	predicted protein [Populus trichocarpa]	0.973	0.322	0.545	3e-47
255550992	578	nitrate transporter, putative [Ricinus c	0.983	0.318	0.545	3e-47
357454891	638	hypothetical protein MTR_2g101610 [Medic	0.973	0.285	0.508	3e-47
357454889	637	hypothetical protein MTR_2g101590 [Medic	0.973	0.285	0.518	7e-47
356556326	616	PREDICTED: probable peptide transporter	0.973	0.295	0.505	9e-47
356526121	607	PREDICTED: probable peptide transporter	0.973	0.299	0.497	1e-46

>gi|224087732|ref|XP_002335129.1| predicted protein [Populus trichocarpa] gi|222832886|gb|EEE71363.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/187 (56%), Positives = 130/187 (69%), Gaps = 3/187 (1%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           MVLLWLTTI P AR  +C     +    AT  QL+ LY   GLMS+G GGIRS SLAFGA
Sbjct: 118 MVLLWLTTIIPGARVPSCAQFSSNCTNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGA 177

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +QL K D +K      L+S+FSWYYV+ SAS  +++T IVYIQD +GWKVGFG+P  +M+
Sbjct: 178 DQLSKRDSLKHAG--ILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMI 235

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
           LS L FFLASP YVK KA  S L G  +VLVAS++ R I+LSS    +E YHHR+GS  +
Sbjct: 236 LSTLSFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLD-TDELYHHRKGSALV 294

Query: 181 VPSENLR 187
           VPSE +R
Sbjct: 295 VPSERIR 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141763|ref|XP_002324234.1| predicted protein [Populus trichocarpa] gi|222865668|gb|EEF02799.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 136/187 (72%), Gaps = 4/187 (2%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           ++LLWLTTI P  RP  C     D CESA+  QL+LLY + GLM++G GGIRSSSLAFGA
Sbjct: 107 VILLWLTTIIPGTRPPPCVQ-FHDSCESASTLQLLLLYSSLGLMAIGAGGIRSSSLAFGA 165

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           EQL K D +K      L+S+F WYY +VS +  +A+T I+YIQDN+GWKVGFGIP  +M+
Sbjct: 166 EQLGKRDTLKRAG--ILESFFRWYYATVSVALFLAMTCILYIQDNMGWKVGFGIPVVLMI 223

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
           LS L FFLASP YVKSKA    L G  +VLVAS++NR IKLSS Q  ++ YHHR+GS  L
Sbjct: 224 LSTLSFFLASPIYVKSKAKAGWLDGFARVLVASFRNRSIKLSS-QVTDDVYHHRKGSRLL 282

Query: 181 VPSENLR 187
           VPSE LR
Sbjct: 283 VPSEKLR 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106908|ref|XP_002333609.1| predicted protein [Populus trichocarpa] gi|222837572|gb|EEE75937.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 104/187 (55%), Positives = 126/187 (67%), Gaps = 3/187 (1%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           MVLLWLTTI P A   +C          AT  QL+ LY   GLMS+G GGIRS SLAFGA
Sbjct: 118 MVLLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGA 177

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +QL K D +K      L+S+FSWYYV+ SAS  +++T IVYIQD +GWKVGFG+P  +M+
Sbjct: 178 DQLSKRDSLKHAG--ILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMI 235

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
           LS L FFLASP YVK K   S L G  +VLVASY+ R I+LS     +E YHHR+GS  +
Sbjct: 236 LSTLSFFLASPIYVKPKVKASWLIGFARVLVASYRKRRIELSWLD-TDELYHHRKGSALV 294

Query: 181 VPSENLR 187
           VPSE +R
Sbjct: 295 VPSERIR 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141761|ref|XP_002324233.1| predicted protein [Populus trichocarpa] gi|222865667|gb|EEF02798.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/187 (55%), Positives = 127/187 (67%), Gaps = 3/187 (1%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           MVLLWLTTI P A   +C          AT  QL+ LY   GLMS+G GGIRS SLAFGA
Sbjct: 59  MVLLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGA 118

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +QL K D +K      L+S+FSWYYV  SAS  +++T +VYIQ+ +GWKVGFG+P  +M+
Sbjct: 119 DQLSKRDSLKHAG--ILESFFSWYYVISSASVFISMTCVVYIQEAMGWKVGFGVPVVLMI 176

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
           LS L FFLASP YVK KA  S L G  +VLVAS++ R I+LSS    +E YHHR+GS  +
Sbjct: 177 LSTLSFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLD-TDELYHHRKGSALV 235

Query: 181 VPSENLR 187
           VPSE +R
Sbjct: 236 VPSERIR 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141759|ref|XP_002324232.1| predicted protein [Populus trichocarpa] gi|222865666|gb|EEF02797.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 130/187 (69%), Gaps = 5/187 (2%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           MVLLWLTT FP AR   C H     C S +  QL+ LY AFG M++G GGIRSSSLAFGA
Sbjct: 96  MVLLWLTT-FPEARQPLCVH-FSHSCNSRSTLQLVHLYTAFGFMAIGAGGIRSSSLAFGA 153

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +QL     ++       +S+F WYYV+V+AS  VA+T +VYIQ+N+GW VGFG+P  +M+
Sbjct: 154 DQLSITHNLQRAR--IRESFFRWYYVTVTASVFVAMTCVVYIQENMGWMVGFGVPVVLMI 211

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
           LSAL F LASPFYVKSK   S ++GL QV+VAS++NR ++LS+    E RY H  GS+  
Sbjct: 212 LSALSFSLASPFYVKSKPKASWITGLAQVVVASFRNRSVELSTQATVEVRY-HTTGSILP 270

Query: 181 VPSENLR 187
           VPS+ LR
Sbjct: 271 VPSKRLR 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550992|ref|XP_002516544.1| nitrate transporter, putative [Ricinus communis] gi|223544364|gb|EEF45885.1| nitrate transporter, putative [Ricinus communis]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 130/187 (69%), Gaps = 3/187 (1%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           ++LLWLT + P ARPL CD    D C+S T  QL+LLY +FGL+S+G GGIRSSSLAFGA
Sbjct: 107 IILLWLTAVIPQARPLPCDQFTSDSCQSPTTLQLLLLYSSFGLLSIGAGGIRSSSLAFGA 166

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +QL  G  +K      L+ + SWYYV VS S++VA+T IVYIQD +GWKVGFG+P  +M 
Sbjct: 167 DQLGMGQSLKRAG--ILERFISWYYVLVSVSAVVAMTCIVYIQDAMGWKVGFGVPVVLMA 224

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
           ++ L FF AS FYVKSK   S  +G  QVL A+Y NR I  SS Q + + YH+R+G+  +
Sbjct: 225 IAVLSFFSASSFYVKSKPTASSFTGFAQVLAAAYHNRSIPFSS-QDSNDGYHNRKGATVV 283

Query: 181 VPSENLR 187
            PSE LR
Sbjct: 284 APSEMLR 290

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454891|ref|XP_003597726.1| hypothetical protein MTR_2g101610 [Medicago truncatula] gi|87240438|gb|ABD32296.1| TGF-beta receptor, type I/II extracellular region [Medicago truncatula] gi|355486774|gb|AES67977.1| hypothetical protein MTR_2g101610 [Medicago truncatula]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/187 (50%), Positives = 134/187 (71%), Gaps = 5/187 (2%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           M LLWLT + P ARP AC+HP  +GCESAT  QL +L+ A  L+++G GGI + SLAFGA
Sbjct: 113 MSLLWLTAMIPAARPSACNHP-SEGCESATPGQLAMLFSALILIAIGNGGI-TCSLAFGA 170

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +Q+ + D     +   L+ +FSWYY  ++ + ++A+T IVYIQD+LGW++GFG+PAA+ML
Sbjct: 171 DQVNRKD--NPNNYRVLEIFFSWYYAFITIAVIIALTGIVYIQDHLGWRIGFGVPAALML 228

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
           +S + FFLASP YVK    TSLL+G  QV VA+YKNR + L  P+ + E YHH++ S  +
Sbjct: 229 ISTVLFFLASPLYVKITQRTSLLTGFAQVSVAAYKNRKLSL-PPKTSPEFYHHKKDSDLV 287

Query: 181 VPSENLR 187
           +P++ LR
Sbjct: 288 IPTDKLR 294

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454889|ref|XP_003597725.1| hypothetical protein MTR_2g101590 [Medicago truncatula] gi|87240440|gb|ABD32298.1| TGF-beta receptor, type I/II extracellular region [Medicago truncatula] gi|355486773|gb|AES67976.1| hypothetical protein MTR_2g101590 [Medicago truncatula]

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 132/187 (70%), Gaps = 5/187 (2%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           M LLWLT + P ARP AC+HP  +GCESAT  QL +L+ A  L+++G GGI S SLAFGA
Sbjct: 112 MSLLWLTAMIPSARPPACNHP-SEGCESATPGQLAMLFSALILIAIGNGGI-SCSLAFGA 169

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +Q+ + D   ++    L+ +FSWYY   + + ++A+T IVYIQD+LGWKVGFG+PA +ML
Sbjct: 170 DQVNRKDNPNNRR--VLEIFFSWYYAFTTIAVIIALTGIVYIQDHLGWKVGFGVPAILML 227

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
           +S + FFLASP YVK K  TSL +G  QV VA+YKNR + L  P+ + E YH ++ S  +
Sbjct: 228 ISTVLFFLASPLYVKIKQKTSLFTGFAQVSVAAYKNRKLPL-PPKTSPEFYHQQKDSELV 286

Query: 181 VPSENLR 187
           VP++ LR
Sbjct: 287 VPTDKLR 293

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556326|ref|XP_003546477.1| PREDICTED: probable peptide transporter At1g52190-like [Glycine max]

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 129/186 (69%), Gaps = 4/186 (2%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           M LLWLT + P ARP  C      GC+SATG Q+ +L  A  LMS+G GG+ S SLAFGA
Sbjct: 111 MTLLWLTAMIPQARPPTCSSNKAGGCKSATGGQMAILISALALMSVGNGGL-SCSLAFGA 169

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +Q+ + D   ++    L+ +FSWYY S + S ++A+T IVYIQD+LGWKVG+G+PAA+ML
Sbjct: 170 DQVNRKDNPNNRR--VLEIFFSWYYASAAISVIIALTGIVYIQDHLGWKVGYGVPAALML 227

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
           LS + F LASP YVK+K  +SL +G +QV+V +YKNR + L  P  + E YHH++ S  +
Sbjct: 228 LSTVSFLLASPLYVKNKVESSLFTGFVQVIVVAYKNRKLPL-PPNNSPEHYHHKKESDLV 286

Query: 181 VPSENL 186
           VP++ L
Sbjct: 287 VPTDKL 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526121|ref|XP_003531668.1| PREDICTED: probable peptide transporter At1g52190-like [Glycine max]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 132/187 (70%), Gaps = 5/187 (2%)

Query: 1   MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGA 60
           M LL LT + P +RP  C+ P  + C+ AT  Q+ +L  +F LMS+G GG+ S S+AFGA
Sbjct: 116 MALLCLTAMIPQSRPPPCN-PATERCKPATAGQMAMLISSFALMSIGNGGL-SCSIAFGA 173

Query: 61  EQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML 120
           +Q+ K D     ++ AL+++FSWYY S + S ++A+T+IVYIQD+ GWKVGFG+PAA+M 
Sbjct: 174 DQVNKKD--NPNNQRALETFFSWYYASTAFSVIIALTVIVYIQDHFGWKVGFGVPAALMF 231

Query: 121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
           +S   FFLASP YVK+K   SL++GL QV+V +YKNR + L  P+ + E YHHR+ S  +
Sbjct: 232 MSTFFFFLASPLYVKNKIQGSLITGLAQVIVVAYKNRKLPL-PPRNSAEMYHHRKDSDLV 290

Query: 181 VPSENLR 187
           VP++ LR
Sbjct: 291 VPTDKLR 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2037452	607	AT1G52190 [Arabidopsis thalian	0.983	0.303	0.396	1.8e-29
TAIR|locus:2093442	591	AT3G16180 [Arabidopsis thalian	0.989	0.313	0.379	1.5e-28
TAIR|locus:2172249	616	GTR2 "AT5G62680" [Arabidopsis	0.823	0.25	0.295	1.6e-13
TAIR|locus:2144281	481	AT5G11570 [Arabidopsis thalian	0.716	0.278	0.328	9.3e-13
TAIR|locus:2061843	583	AT2G40460 [Arabidopsis thalian	0.860	0.276	0.294	1e-12
TAIR|locus:2205719	576	NRT1.6 "nitrate transporter 1.	0.882	0.286	0.257	1.3e-12
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.973	0.308	0.272	1.4e-12
TAIR|locus:2035005	587	NRT1.9 "nitrate transporter 1.	0.882	0.281	0.271	2.2e-12
TAIR|locus:2102669	516	AT3G45690 [Arabidopsis thalian	0.935	0.339	0.298	2.3e-12
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.860	0.295	0.289	3.2e-12

TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 1.8e-29, P = 1.8e-29
 Identities = 75/189 (39%), Positives = 99/189 (52%)

Query:     1 MVLLWLTTIFPHARPLACDHPLRDG--CESATGSQLMLLYXXXXXXXXXXXXXXXXXXAF 58
             MVLLWLT + P  +P  CD P   G  C S+T SQL LLY                  AF
Sbjct:   107 MVLLWLTAMLPQVKPSPCD-PTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAF 165

Query:    59 GAEQLEKGDGIKSKSESALKXXXXXXXXXXXXXXXXXXTLIVYIQDNLGWKVGFGIPAAI 118
             GA+QL+  +    K+E  L+                  T IVYIQ++LGWK+GFG+PA +
Sbjct:   166 GADQLDNKEN--PKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVL 223

Query:   119 MLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSV 178
             ML++AL F LASP YV      SL +GL Q +VA+YK R + L     + + Y+H + S 
Sbjct:   224 MLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSE 283

Query:   179 RLVPSENLR 187
                PS+ LR
Sbjct:   284 IKAPSQKLR 292

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 71/187 (37%), Positives = 95/187 (50%)

Query:     1 MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGA 60
             MV+LWLT + P  +P  C       C SAT SQL LLY                  AFGA
Sbjct:   109 MVVLWLTAMLPQVKPSPCVATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGA 168

Query:    61 EQLEKGDGIKSKSESALKXXXXXXXXXXXXXXXXXXTLIVYIQDNLGWKVGFGIPAAIML 120
             +QL+  +    K+E  L+                  T+IVYIQD+LGWK+GFGIPA +ML
Sbjct:   169 DQLDNKEN--PKNERVLESFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILML 226

Query:   121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
             L+   F  ASP YVK   + SL +GL QV+ A+Y  R++ L     + + Y+  + S   
Sbjct:   227 LAGFLFVFASPLYVKRDVSKSLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELK 286

Query:   181 VPSENLR 187
              PS+ LR
Sbjct:   287 APSDKLR 293

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 47/159 (29%), Positives = 67/159 (42%)

Query:     3 LLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGAEQ 62
             ++ LT   P   P AC       C   +G Q+  L                   AFGA+Q
Sbjct:   131 VILLTAAVPQLHPAACGTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQ 190

Query:    63 LEKGDGIKSKS-ESALKXXXXXXXXXXXXXXXXXXTLIVYIQDNLGWKVGFGIPAAIMLL 121
                    KS+S +  +                   TL+VY+Q N+ W +G  IPA +M L
Sbjct:   191 FNP----KSESGKRGIDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFL 246

Query:   122 SALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIK 160
             + L FF     YVK KA+ S L+G+ QV+  + K R +K
Sbjct:   247 ACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGLK 285

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0090448 "glucosinolate:hydrogen symporter activity" evidence=IDA

GO:0090449 "phloem glucosinolate loading" evidence=IMP

GO:1901349 "glucosinolate transport" evidence=IDA

TAIR|locus:2144281 AT5G11570 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 9.3e-13, P = 9.3e-13
 Identities = 46/140 (32%), Positives = 66/140 (47%)

Query:     1 MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGA 60
             MVLLWLTTI    RP  CD  L + C+  T  + +LLY                  AF A
Sbjct:    99 MVLLWLTTII---RP-ECDK-LTNVCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAA 153

Query:    61 EQLEKGDGIKSKSESALKXXXXXXXXXXXXXXXXXXTLIVYIQDNLGWKVGFGIPAAIML 120
             +QL+     +  + S+L+                  +L+V++Q   GW++GFG+  A M 
Sbjct:   154 DQLQPNQTSRVTT-SSLETLFNWYYFSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAMA 212

Query:   121 LSALCFFLASPFYVKSKANT 140
             LS   FF ASP+YV+ +  T
Sbjct:   213 LSVALFFAASPYYVRFQKPT 232

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 51/173 (29%), Positives = 77/173 (44%)

Query:     1 MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGA 60
             M+LL +       RP  C++ +   C  A+  Q+   Y                   FGA
Sbjct:   110 MILLTMAVTVKSLRP-TCENGV---CNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGA 165

Query:    61 EQLEKGDGIKSKSESALKXXXXXXXXXXXXXXXXXXTL-IVYIQDNLGWKVGFGIPAAIM 119
             +Q +    I+ K +   K                  TL +VYIQ+NLGW +G+GIP   +
Sbjct:   166 DQFDSYS-IEEKKQ---KVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGL 221

Query:   120 LLSALCFFLASPFYVKSKANT-SLLSGLIQVLVASYKNRHIKLSSPQAAEERY 171
             L+S + F++ +PFY      T +L   L+QV +A++KNR  KL  P    E Y
Sbjct:   222 LVSLVVFYIGTPFYRHKVIKTDNLAKDLVQVPIAAFKNR--KLQCPDDHLELY 272

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 45/175 (25%), Positives = 76/175 (43%)

Query:     1 MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGA 60
             ++ + LT   P   P  C++P  D C+     QL +L+                   FG 
Sbjct:   100 LMTVTLTACLPQLHPPPCNNPHPDECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGV 159

Query:    61 EQLEKGDGIKSKSESALKXXXXXXX---XXXXXXXXXXXTLIVYIQDNLGWKVGFGIPAA 117
             +Q ++      ++E  LK                     T++VY+Q  + W +GF IP +
Sbjct:   160 DQFDQ------RTEQGLKGVASFFNWYYLTLTMVLIFSHTVVVYLQ-TVSWVIGFSIPTS 212

Query:   118 IMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYH 172
             +M  + + FF+   FYV  K   S+ SG+ +V+VA+ K R +K+S      E Y+
Sbjct:   213 LMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKRDLKISLVDDGTEEYY 267

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010098 "suspensor development" evidence=IMP

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0048316 "seed development" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 51/187 (27%), Positives = 80/187 (42%)

Query:     1 MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGA 60
             M LL L+   P  +P AC       C  AT  Q  + +                  +FGA
Sbjct:   138 MALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGA 197

Query:    61 EQLEKGDGIKSKSESALKXXXXXXXXXXXXXXXXXXTLIVYIQDNLGWKVGFGIPAAIML 120
             +Q +  D  + +   A                    TL+V++Q+N+GW +GF IP   M 
Sbjct:   198 DQFDDTDP-RERVRKA--SFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMG 254

Query:   121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHHREGSVRL 180
             +S   FF+ +P Y   K   S ++ + QVLVA+Y  R +KL+ P+     Y  RE +  +
Sbjct:   255 VSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAY--RKLKLNLPEDISFLYETREKNSMI 312

Query:   181 VPSENLR 187
               S  ++
Sbjct:   313 AGSRKIQ 319

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 47/173 (27%), Positives = 72/173 (41%)

Query:     2 VLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGAE 61
             V + LT +     P  C   +   C   +  Q+M L                    FGA+
Sbjct:   106 VAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGAD 165

Query:    62 QLEKGDGIKSKS-ESALKXXXXXXXXXXXXXXXXXXTLIVYIQDNLGWKVGFGIPAAIML 120
             Q +     K+K  +  ++                  TLIVY+Q N+ W +G  IPA +ML
Sbjct:   166 QFDP----KTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILML 221

Query:   121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHH 173
             L  + FF  S  YVK KA+ S +  + +V+V + K R +K   P    E Y++
Sbjct:   222 LGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRLK---PVGPNELYNY 271

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010233 "phloem transport" evidence=IMP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0090408 "phloem nitrate loading" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2102669 AT3G45690 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 57/191 (29%), Positives = 81/191 (42%)

Query:     1 MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGA 60
             ++LL + T   H RP  C+      CES +  QL +LY                  + GA
Sbjct:   104 IILLTMITSLDHLRPPPCETG-SILCESPSKLQLGILYIALALVIIGSAGTRFTLASAGA 162

Query:    61 EQLEKGDGIKSKSESALKXXXXXXXXXXXXXXXXXXTLIVYIQDNLGWKVGFGIPAAIML 120
              Q EK      K + +                    T IVY Q+N  WK+GFG+ A   L
Sbjct:   163 NQYEK-----PKEQGSF---FNWYFLTLYTGAITGATAIVYTQENASWKLGFGLCAVANL 214

Query:   121 LSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHH---REGS 177
             +S + F     +Y   K   S  + LI+V+VA+ + R   +SS    EE YHH   REG 
Sbjct:   215 ISFIVFVSGKRYYKHDKPMGSPFTNLIRVVVAATRKRKAVISS---REEDYHHGLGREGK 271

Query:   178 VR-LVPSENLR 187
                 +PS++ R
Sbjct:   272 TSSAMPSKSFR 282

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 49/169 (28%), Positives = 73/169 (43%)

Query:     1 MVLLWLTTIFPHARPLACDHPLRDGCESATGSQLMLLYXXXXXXXXXXXXXXXXXXAFGA 60
             MV L L+   P  +P  C   L   C  AT  Q  +L+                  +FGA
Sbjct:   128 MVALTLSASVPGLKPAECIGSL---CPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGA 184

Query:    61 EQLEKGDGIKSKSESALKXXXXX-XXXXXXXXXXXXXTLIVYIQDNLGWKVGFGIPAAIM 119
             +Q +K D     SE   K                   T++V+IQ+N GW++GF IP   M
Sbjct:   185 DQFDKTD----PSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFM 240

Query:   120 LLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAE 168
              L+ + FF  +P Y   K   S ++ + QVLVA+Y+  ++K+      E
Sbjct:   241 GLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAAYRKSNLKVPEDSTDE 289

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.25930001 hypothetical protein (605 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
pfam00854	372	pfam00854, PTR2, POT family	2e-26
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	5e-09
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	2e-07
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	7e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	9e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  102 bits (257), Expect = 2e-26
 Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 8/140 (5%)

Query: 26  CESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYY 85
             S +  Q+ L Y+   L++LG GGI+ +  AFGA+Q ++        +     +FSW+Y
Sbjct: 24  PPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQ------DPRRDGFFSWFY 77

Query: 86  VSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVK--SKANTSLL 143
            S++A S++A  +  Y+Q N+G+ +GFG+PA  MLL+ L F L S  Y K      +   
Sbjct: 78  FSINAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFT 137

Query: 144 SGLIQVLVASYKNRHIKLSS 163
             +  ++ A+ KNR ++L  
Sbjct: 138 VCIAFIITAAGKNRKLQLPK 157

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 30  TGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVS 89
           + S    LY+   L+ +G G  + +  +   E   K D  +          F+ +Y+ ++
Sbjct: 113 SVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG-------FTLFYMGIN 165

Query: 90  ASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVKSKA 138
             S++A  +   +  N GW VGFG+ A  M++  L  FL    +VK   
Sbjct: 166 IGSLIAPIITGLLAINYGWHVGFGLAAVGMII-GLVIFLLGRRHVKGIG 213

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 26/161 (16%)

Query: 20  HPLRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKS 79
           HPL D         L L+ LA    +LG GGI+    AFG +Q E+         S    
Sbjct: 81  HPLHDA--------LSLVGLALI--ALGTGGIKPCVSAFGGDQFEER------QLSLRFR 124

Query: 80  YFSWYYVSVSASSMVAVTLIVYIQDNLG-------WKVGFGIPAAIMLLSALCFFLASPF 132
           +FS++Y +++A S+ +  +   ++ ++G       + + FG+P  +M L+ + F + S  
Sbjct: 125 FFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKM 184

Query: 133 YVKSKANTSLLSGLIQVLVASYKNRHIKLSSPQAAEERYHH 173
           Y K     +++S +++ +V + K R     +      R H 
Sbjct: 185 YKKKPPVGNIVSKVMKCIVFALKKR---FRTRSEDWPRLHW 222

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 29  ATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSV 88
           A      L++   G +++G G  +++  +   +  E+GD             F+ +Y+S+
Sbjct: 97  AMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGD------MPRRDGGFTLFYMSI 150

Query: 89  SASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLAS 130
           +  S ++  L   I +N G+ VGF + A  M++  L FF   
Sbjct: 151 NIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 9/101 (8%)

Query: 28  SATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVS 87
            A  S L LL +   L+ LGGG +  ++ A  AE                      +   
Sbjct: 81  LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP---------KERGRALGLFSAG 131

Query: 88  VSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFL 128
               +++   L   + ++LGW+  F I A + LL AL    
Sbjct: 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.95
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.87
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.72
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.43
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.32
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.28
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.14
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.71
TIGR00900	365	2A0121 H+ Antiporter protein.	97.89
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.71
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.67
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.64
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.64
PRK05122	399	major facilitator superfamily transporter; Provisi	97.63
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.63
TIGR00805	633	oat sodium-independent organic anion transporter.	97.6
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.55
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.51
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.5
TIGR00893	399	2A0114 d-galactonate transporter.	97.5
PRK03545	390	putative arabinose transporter; Provisional	97.47
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.44
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.43
TIGR00895	398	2A0115 benzoate transport.	97.39
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.38
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.37
PRK10489	417	enterobactin exporter EntS; Provisional	97.33
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.33
TIGR00901	356	2A0125 AmpG-related permease.	97.32
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.25
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.24
PRK11663	434	regulatory protein UhpC; Provisional	97.22
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.21
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.21
PRK12382	392	putative transporter; Provisional	97.18
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.14
PRK10504	471	putative transporter; Provisional	97.14
PRK11902	402	ampG muropeptide transporter; Reviewed	97.12
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.07
PRK12307	426	putative sialic acid transporter; Provisional	97.06
PRK10054	395	putative transporter; Provisional	97.06
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.04
PRK10091	382	MFS transport protein AraJ; Provisional	97.04
PRK11010	491	ampG muropeptide transporter; Validated	97.04
PRK09874	408	drug efflux system protein MdtG; Provisional	97.02
PRK11043	401	putative transporter; Provisional	96.94
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	96.91
PRK03893	496	putative sialic acid transporter; Provisional	96.89
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	96.87
TIGR00891	405	2A0112 putative sialic acid transporter.	96.86
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	96.83
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.82
KOG3764	464	consensus Vesicular amine transporter [Intracellul	96.81
PRK12382	392	putative transporter; Provisional	96.74
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.71
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	96.68
PRK03699	394	putative transporter; Provisional	96.67
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.65
PRK10642	490	proline/glycine betaine transporter; Provisional	96.62
PRK09874	408	drug efflux system protein MdtG; Provisional	96.62
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.6
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.58
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	96.58
PRK09705	393	cynX putative cyanate transporter; Provisional	96.58
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.57
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.56
TIGR00893	399	2A0114 d-galactonate transporter.	96.56
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	96.55
PRK10077	479	xylE D-xylose transporter XylE; Provisional	96.54
PRK05122	399	major facilitator superfamily transporter; Provisi	96.53
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.42
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.41
PRK15011	393	sugar efflux transporter B; Provisional	96.34
PRK03633	381	putative MFS family transporter protein; Provision	96.29
TIGR00898	505	2A0119 cation transport protein.	96.29
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.28
PRK10489	417	enterobactin exporter EntS; Provisional	96.25
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.18
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.16
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	96.1
PRK09952	438	shikimate transporter; Provisional	96.06
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	96.05
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	95.98
PRK03545	390	putative arabinose transporter; Provisional	95.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	95.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	95.93
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	95.9
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	95.89
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	95.8
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	95.73
PRK15075	434	citrate-proton symporter; Provisional	95.69
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.62
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	95.53
PRK09705	393	cynX putative cyanate transporter; Provisional	95.52
TIGR00897	402	2A0118 polyol permease family. This family of prot	95.49
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	95.4
PRK09528	420	lacY galactoside permease; Reviewed	95.24
PRK03633	381	putative MFS family transporter protein; Provision	95.22
PRK10133	438	L-fucose transporter; Provisional	95.11
PRK15011	393	sugar efflux transporter B; Provisional	95.05
PRK03699	394	putative transporter; Provisional	94.77
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	94.7
KOG2533	495	consensus Permease of the major facilitator superf	94.61
PRK11663	434	regulatory protein UhpC; Provisional	94.57
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	94.42
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	94.41
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	94.38
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	94.35
PRK09669	444	putative symporter YagG; Provisional	94.29
PRK03893	496	putative sialic acid transporter; Provisional	94.29
PLN00028	476	nitrate transmembrane transporter; Provisional	94.16
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	94.06
KOG3626	735	consensus Organic anion transporter [Secondary met	94.02
TIGR00891	405	2A0112 putative sialic acid transporter.	94.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	93.78
PRK10054	395	putative transporter; Provisional	93.7
PRK09669	444	putative symporter YagG; Provisional	93.65
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	93.63
TIGR00897	402	2A0118 polyol permease family. This family of prot	92.99
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	92.88
PRK11010	491	ampG muropeptide transporter; Validated	92.67
PRK10213	394	nepI ribonucleoside transporter; Reviewed	92.48
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	92.38
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	92.21
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	92.18
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	91.92
PRK09952	438	shikimate transporter; Provisional	91.78
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	91.78
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	91.63
KOG2532	466	consensus Permease of the major facilitator superf	91.37
PF13347	428	MFS_2: MFS/sugar transport protein	91.3
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	91.27
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	91.21
PRK11646	400	multidrug resistance protein MdtH; Provisional	91.13
PLN00028	476	nitrate transmembrane transporter; Provisional	91.08
PRK11462	460	putative transporter; Provisional	90.98
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	90.78
PRK09848	448	glucuronide transporter; Provisional	90.54
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	90.53
KOG0254	513	consensus Predicted transporter (major facilitator	90.48
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	90.38
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	90.38
PF13347	428	MFS_2: MFS/sugar transport protein	90.37
PRK09528	420	lacY galactoside permease; Reviewed	90.14
TIGR00900	365	2A0121 H+ Antiporter protein.	89.93
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	89.89
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	89.84
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	89.8
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	88.79
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	88.66
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	88.55
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	88.03
PRK10429	473	melibiose:sodium symporter; Provisional	87.9
PRK10642	490	proline/glycine betaine transporter; Provisional	87.81
PRK10429	473	melibiose:sodium symporter; Provisional	87.72
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	87.33
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	87.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	86.85
PRK11652	394	emrD multidrug resistance protein D; Provisional	86.78
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	86.67
TIGR00898	505	2A0119 cation transport protein.	86.37
PRK09584	500	tppB putative tripeptide transporter permease; Rev	86.04
PRK10091	382	MFS transport protein AraJ; Provisional	85.7
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	85.25
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	84.7
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	84.51
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	83.98
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	83.77
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	83.48
PRK11902	402	ampG muropeptide transporter; Reviewed	83.09
PRK15075	434	citrate-proton symporter; Provisional	82.93
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	82.47
PRK12307	426	putative sialic acid transporter; Provisional	82.16
TIGR00895	398	2A0115 benzoate transport.	82.04
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	81.94
PRK10504	471	putative transporter; Provisional	81.11

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=8.9e-35  Score=268.26  Aligned_cols=181  Identities=38%  Similarity=0.633  Sum_probs=160.6

Q ss_pred             eeeehhhhcCCCCCCCCCCC-CCCCCCCCCchhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHH
Q 029822            2 VLLWLTTIFPHARPLACDHP-LRDGCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSY   80 (187)
Q Consensus         2 ~ll~~sa~~~~~~p~~c~~~-~~~~c~~~~~~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~   80 (187)
                      ++||+++.+|.++|++|... ....|..++..|..++|.+|+++++|+||+|||+.+||+||||+.+++++   +.+.+|
T Consensus       119 ~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~---~~~~~f  195 (571)
T KOG1237|consen  119 FGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV---KGIPSF  195 (571)
T ss_pred             HHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh---hCcccc
Confidence            57899999999999998211 14579999999999999999999999999999999999999998887666   778899


Q ss_pred             HHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHHHHhcCCceeecCCCCChhHHHHHHHHHHHHhcCCC
Q 029822           81 FSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIK  160 (187)
Q Consensus        81 F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~f~~g~~~y~~~~p~gs~l~~~~~v~~~a~~~~~~~  160 (187)
                      |||||+.+|+|.+++.++.+|+|++.||.+||++++++|++++++|+.|++.|+.++|.|||+++++||++++++||+..
T Consensus       196 FnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~  275 (571)
T KOG1237|consen  196 FNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAV  275 (571)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccccccCCCccccCCCCCCC
Q 029822          161 LSSPQAAEERYHHREGSVRLVPSENLR  187 (187)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (187)
                      ++.++  +++++........+||++||
T Consensus       276 ~~~~~--~~~~~~~~~~~~~~~t~~f~  300 (571)
T KOG1237|consen  276 VSLDP--EELYYDCTDSVAIEGTKPFR  300 (571)
T ss_pred             CCCcc--hhccccccccccccCCcccc
Confidence            99986  45422222334456666665

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.95  E-value=3.8e-29  Score=218.29  Aligned_cols=128  Identities=38%  Similarity=0.718  Sum_probs=106.0

Q ss_pred             chhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcce
Q 029822           31 GSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKV  110 (187)
Q Consensus        31 ~~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~  110 (187)
                      +.+.+++|+||+++++|+|++|||+++|++|||+++++      ++++++|+||||++|+|++++.++.+|+|+++||.+
T Consensus        30 ~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~------~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~  103 (372)
T PF00854_consen   30 GIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD------SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFL  103 (372)
T ss_dssp             ----CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT------THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHH
T ss_pred             hHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch------hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhh
Confidence            56789999999999999999999999999999998753      589999999999999999999999999999999999


Q ss_pred             ehhhhHHHHHHHHHHHHhcCCceeec-CCCCChhHH-HHHHHHHHHHhcCCCCCCC
Q 029822          111 GFGIPAAIMLLSALCFFLASPFYVKS-KANTSLLSG-LIQVLVASYKNRHIKLSSP  164 (187)
Q Consensus       111 gF~i~~v~~~val~~f~~g~~~y~~~-~p~gs~l~~-~~~v~~~a~~~~~~~~~~~  164 (187)
                      +|++++++|++++++|+.++++|++. +|.|+++++ ...++.++.++++...|.+
T Consensus       104 ~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (372)
T PF00854_consen  104 GFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKG  159 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HH
T ss_pred             hhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccc
Confidence            99999999999999999999999998 899999999 7777778888888887644

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.87  E-value=2.9e-22  Score=187.82  Aligned_cols=122  Identities=27%  Similarity=0.586  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc------
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL------  106 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~------  106 (187)
                      +..+++++|+++++|+|++|||+.++++|||++++.      ++++++|+|||+++|+|++++.++++|+++++      
T Consensus        84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~------~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~  157 (654)
T TIGR00926        84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL------SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ  157 (654)
T ss_pred             HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence            456788999999999999999999999999987543      57999999999999999999999999999654      


Q ss_pred             -CcceehhhhHHHHHHHHHHHHhcCCceeecCCCCChhHHHHHHHHHHHHhcCCC
Q 029822          107 -GWKVGFGIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHIK  160 (187)
Q Consensus       107 -gw~~gF~i~~v~~~val~~f~~g~~~y~~~~p~gs~l~~~~~v~~~a~~~~~~~  160 (187)
                       ||+++|++++++|++++++|+.++++|++.+|.|+++.+++++++.++++|...
T Consensus       158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~  212 (654)
T TIGR00926       158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFST  212 (654)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhcc
Confidence             799999999999999999999999999999999999999999999999876543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.72  E-value=2.1e-18  Score=155.85  Aligned_cols=97  Identities=25%  Similarity=0.432  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCccee
Q 029822           32 SQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVG  111 (187)
Q Consensus        32 ~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~g  111 (187)
                      .....+|+||.+|++|+|++|||++++++|||+++|+       +||..|+.||+++|+|+++++..++++++++||+.+
T Consensus       115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp-------rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~g  187 (498)
T COG3104         115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP-------RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVG  187 (498)
T ss_pred             ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc-------ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHH
Confidence            3467899999999999999999999999999999998       489999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhcCCceee
Q 029822          112 FGIPAAIMLLSALCFFLASPFYVK  135 (187)
Q Consensus       112 F~i~~v~~~val~~f~~g~~~y~~  135 (187)
                      |++++++|.+++++|+++++.+..
T Consensus       188 F~~aavGm~~gl~~f~~~~r~~~~  211 (498)
T COG3104         188 FGLAAVGMIIGLVIFLLGRRHVKG  211 (498)
T ss_pred             HHHHHHHHHHHHHHHHHccchhcC
Confidence            999999999999999999988865

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.43  E-value=2.9e-13  Score=123.15  Aligned_cols=101  Identities=19%  Similarity=0.443  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGI  114 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i  114 (187)
                      .++++++.++++|+|++|||..++++|||++++       +++++.|+++|+++|+|+++++++.+++++++||+++|.+
T Consensus       106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~-------~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i  178 (489)
T PRK10207        106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKD-------PRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL  178 (489)
T ss_pred             hHHHHHHHHHHhccccccCCHHHHHHHhcCCCc-------hhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence            346789999999999999999999999998655       3567799999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCceeec--CCCCCh
Q 029822          115 PAAIMLLSALCFFLASPFYVKS--KANTSL  142 (187)
Q Consensus       115 ~~v~~~val~~f~~g~~~y~~~--~p~gs~  142 (187)
                      +.+++.++++.++.+++.+++.  +|.+++
T Consensus       179 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (489)
T PRK10207        179 CGAGLIIALLVYFACRGMVKDIGSEPDHKP  208 (489)
T ss_pred             HHHHHHHHHHHHHHcchhhcccCCCCCccc
Confidence            9999999999998888777553  344433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.32  E-value=2.9e-12  Score=115.95  Aligned_cols=101  Identities=23%  Similarity=0.439  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...+++++.++++|+|+++|+..++++|+|+++++      .+++..|+++|+++|+|+++++.+.+++++++||+.+|.
T Consensus       102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~------~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~  175 (475)
T TIGR00924       102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM------PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFN  175 (475)
T ss_pred             HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc------ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            45677888899999999999999999999987653      356779999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCceeecCCCC
Q 029822          114 IPAAIMLLSALCFFLASPFYVKSKANT  140 (187)
Q Consensus       114 i~~v~~~val~~f~~g~~~y~~~~p~g  140 (187)
                      ++++.+++++++++..++.|++.++++
T Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~  202 (475)
T TIGR00924       176 LAAVGMVIGLLTFFAGRHMLRDIGSVP  202 (475)
T ss_pred             HHHHHHHHHHHHHHHcccccccCCCCC
Confidence            999999999999988888876544333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.28  E-value=5.1e-12  Score=115.57  Aligned_cols=94  Identities=24%  Similarity=0.421  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGI  114 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i  114 (187)
                      ..+++++.++++|+|.++||.+++.+|+|+++|+       +|++.|+++|+.+|+|+++++.+.+++++++||+.+|++
T Consensus       101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~-------~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~i  173 (493)
T PRK15462        101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP-------RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGL  173 (493)
T ss_pred             hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc-------cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHH
Confidence            3467788889999999999999999999987653       678899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCceee
Q 029822          115 PAAIMLLSALCFFLASPFYVK  135 (187)
Q Consensus       115 ~~v~~~val~~f~~g~~~y~~  135 (187)
                      ++++|++++++|+.+++.+.+
T Consensus       174 aaigm~l~li~~~~~~~~l~~  194 (493)
T PRK15462        174 AAVGMIAGLVIFLCGNRHFTH  194 (493)
T ss_pred             HHHHHHHHHHHHHHhhhhhcc
Confidence            999999999999998877644

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.14  E-value=7.6e-11  Score=107.39  Aligned_cols=95  Identities=20%  Similarity=0.471  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...+++++.++++|.|.++|+..++.+++|++++       ++++..++++|+++|+|+++++.+.+++.+++||+++|.
T Consensus       112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~-------~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~  184 (500)
T PRK09584        112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD-------PRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFA  184 (500)
T ss_pred             HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc-------hhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence            3567788899999999999999999999998654       356678999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCceee
Q 029822          114 IPAAIMLLSALCFFLASPFYVK  135 (187)
Q Consensus       114 i~~v~~~val~~f~~g~~~y~~  135 (187)
                      ++++.++++++.++..++.+++
T Consensus       185 i~~i~~~i~~i~~~~~~~~~~~  206 (500)
T PRK09584        185 LSVVGMLITVVNFAFCQRWVKQ  206 (500)
T ss_pred             HHHHHHHHHHHHHHHhHHHhcc
Confidence            9999999998888777655544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.71  E-value=1.5e-08  Score=91.72  Aligned_cols=119  Identities=12%  Similarity=0.216  Sum_probs=91.2

Q ss_pred             hhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC-cce
Q 029822           32 SQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG-WKV  110 (187)
Q Consensus        32 ~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g-w~~  110 (187)
                      .+.+.+.+...++++|.+++-|-.+++++|.|++         .+|.+.|.||||++++|+.+|.++..++.+.-+ ||+
T Consensus       119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~---------~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~  189 (493)
T KOG1330|consen  119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD---------DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRW  189 (493)
T ss_pred             HHHHHHHHHHHHhccchhhhcccchhHhhhcCcc---------hhhhHHHHHhhhhcccccceeEEeeeeeccCccceEE
Confidence            4567777788899999999999999999999996         368899999999999999999999999988766 999


Q ss_pred             ehhhhHHH-HHHHHHHHHhcC-Cceee-cCCC-----CChhHHHHHHHHHHHHhcCC
Q 029822          111 GFGIPAAI-MLLSALCFFLAS-PFYVK-SKAN-----TSLLSGLIQVLVASYKNRHI  159 (187)
Q Consensus       111 gF~i~~v~-~~val~~f~~g~-~~y~~-~~p~-----gs~l~~~~~v~~~a~~~~~~  159 (187)
                      +|.+.++. ..+++++|++.+ +.... .+-+     ..+.+...+=++...+++..
T Consensus       190 af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~  246 (493)
T KOG1330|consen  190 AFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVF  246 (493)
T ss_pred             EEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCce
Confidence            99999986 444666666644 43311 1222     24577777767766664433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.89  E-value=5e-05  Score=63.84  Aligned_cols=86  Identities=16%  Similarity=0.120  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +.+.++++..+.++|.|...|...++.+|.+++         +++.+.++++..+.++|.++++.+..++.+..||+..|
T Consensus        91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~  161 (365)
T TIGR00900        91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE---------EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAI  161 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            567788888889999999999999999999874         45788899999999999999999999998889999999


Q ss_pred             hhhHHHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALCFF  127 (187)
Q Consensus       113 ~i~~v~~~val~~f~  127 (187)
                      .+.++..+++.+..+
T Consensus       162 ~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       162 WVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998877666655433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.71  E-value=0.00022  Score=60.92  Aligned_cols=86  Identities=19%  Similarity=0.161  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...++++..+.++|.+..-+...++..|.+++         +++...+.+++...++|..+++.+..++.+..||+..|.
T Consensus        93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  163 (385)
T TIGR00710        93 IETLLVLRFVQAFGASAGSVISQALVRDIYPG---------EELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA  163 (385)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            45667777888899999999999999998874         456778899999999999999999999988899999999


Q ss_pred             hhHHHHHHHHHHHHh
Q 029822          114 IPAAIMLLSALCFFL  128 (187)
Q Consensus       114 i~~v~~~val~~f~~  128 (187)
                      +.++..++..+..+.
T Consensus       164 ~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       164 FLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888766555554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.67  E-value=8.6e-05  Score=62.22  Aligned_cols=83  Identities=24%  Similarity=0.316  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...++++..+.++|.|...+...++..|.++++         ++...++++..+.++|..+++.+..++.++.||+..|.
T Consensus        85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~  155 (352)
T PF07690_consen   85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPE---------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFL  155 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC---------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHH
T ss_pred             HHHHhhhccccccccccccccccccccccchhh---------hhhhccccccchhhhhhhcccchhhhhhhccccccccc
Confidence            347888888999999999999999999999963         45778899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHH
Q 029822          114 IPAAIMLLSALC  125 (187)
Q Consensus       114 i~~v~~~val~~  125 (187)
                      +.++..+++.++
T Consensus       156 ~~~~~~~~~~il  167 (352)
T PF07690_consen  156 ISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             cccchhhhhhhh
Confidence            999988777664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.64  E-value=0.00021  Score=63.26  Aligned_cols=84  Identities=13%  Similarity=0.054  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|..-+.......|.|++         +++.+...++..+.++|..+++.+..++.+..||+..|
T Consensus       103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f  173 (413)
T PRK15403        103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ---------TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLF  173 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            355677778888888876656666677788774         34566788899999999999999988888889999999


Q ss_pred             hhhHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALC  125 (187)
Q Consensus       113 ~i~~v~~~val~~  125 (187)
                      .+.++..+++++.
T Consensus       174 ~~~~~~~~i~~~~  186 (413)
T PRK15403        174 AIIAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988776666554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.64  E-value=0.00024  Score=60.90  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...+++...+.+++.+...+...++..|.+++         +++...+++++...++|..+++.+..++.+..||+..|.
T Consensus        79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  149 (377)
T PRK11102         79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPK---------EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFW  149 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence            34566667778888898889999999998864         356778899999999999999999999988899999998


Q ss_pred             hhHHHHHHHHHH
Q 029822          114 IPAAIMLLSALC  125 (187)
Q Consensus       114 i~~v~~~val~~  125 (187)
                      +.++..++..+.
T Consensus       150 ~~~~~~~~~~~~  161 (377)
T PRK11102        150 VLALAAILAAAL  161 (377)
T ss_pred             HHHHHHHHHHHH
Confidence            887765555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.63  E-value=0.00013  Score=63.32  Aligned_cols=96  Identities=13%  Similarity=0.035  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGI  114 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i  114 (187)
                      ..++++..+.++|.+..-|.......+.+++         +.+.+.+.+++...++|..+++.+.+++-+..||+..|.+
T Consensus       303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~---------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  373 (399)
T PRK05122        303 WMALIGAALTGFGFSLVFPALGVEAVKRVPP---------QNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLA  373 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            3455666778888888777776666665542         4678889999999999998888889999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCceeecCCC
Q 029822          115 PAAIMLLSALCFFLASPFYVKSKAN  139 (187)
Q Consensus       115 ~~v~~~val~~f~~g~~~y~~~~p~  139 (187)
                      .++..+++++..+.-.++.+++.|+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~  398 (399)
T PRK05122        374 AALAALLGLALTWLLYRRAPRAVPE  398 (399)
T ss_pred             HHHHHHHHHHHHHHhcccccccCCC
Confidence            9888888777766655666555554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.63  E-value=0.00011  Score=69.74  Aligned_cols=121  Identities=11%  Similarity=-0.085  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +.....+.++.++++.+|.+++.+.+.++|.|..++      ++++.++++|||..+.+.+.+.+....+.....+..+|
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~------~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~f  154 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE------RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCF  154 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            466677788899999999999999999999998765      77889999999999999986555444444433455433


Q ss_pred             h-------hhHHHHHHHHHHHHhcCCceeecCCCCChhHHHHHHHHHHHHhcCC
Q 029822          113 G-------IPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRHI  159 (187)
Q Consensus       113 ~-------i~~v~~~val~~f~~g~~~y~~~~p~gs~l~~~~~v~~~a~~~~~~  159 (187)
                      .       ..++.+++.++.++.....++.-++.+..-..+.+++...+..++-
T Consensus       155 g~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~  208 (654)
T TIGR00926       155 GCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK  208 (654)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH
Confidence            3       6667788888889999988888889988888889999888777754

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.60  E-value=0.0004  Score=65.56  Aligned_cols=86  Identities=16%  Similarity=0.229  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc------
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL------  106 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~------  106 (187)
                      ...+++++..+.++|.|..-+...+++.|-++++         ++..++.+++.+..+|..+|+++.+++.+.+      
T Consensus       171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~---------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~  241 (633)
T TIGR00805       171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK---------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSV  241 (633)
T ss_pred             eehhhHHHHHHHhccCCcchhcCchhhhccCCcc---------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccC
Confidence            4567888999999999999999999999988753         4577889999999999999998888776432      


Q ss_pred             ----------------CcceehhhhHHHHHHHHHHHH
Q 029822          107 ----------------GWKVGFGIPAAIMLLSALCFF  127 (187)
Q Consensus       107 ----------------gw~~gF~i~~v~~~val~~f~  127 (187)
                                      +|+.+|.+.++..++..++++
T Consensus       242 ~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~  278 (633)
T TIGR00805       242 NTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF  278 (633)
T ss_pred             CCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            388999998876555444433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.55  E-value=0.00038  Score=60.73  Aligned_cols=84  Identities=17%  Similarity=0.061  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...+++...+.+++.+..-+...+...|.++++         ++.+..++++...++|..+++.+..++.++.||+..|.
T Consensus       101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~  171 (406)
T PRK15402        101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA---------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFV  171 (406)
T ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence            345666677778888888888888888888742         34556677777788899999999899988899999999


Q ss_pred             hhHHHHHHHHHHH
Q 029822          114 IPAAIMLLSALCF  126 (187)
Q Consensus       114 i~~v~~~val~~f  126 (187)
                      +.++..+++.+..
T Consensus       172 ~~~~~~~~~~~~~  184 (406)
T PRK15402        172 LFAALAALSFFGL  184 (406)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887766655543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.51  E-value=0.00027  Score=64.07  Aligned_cols=85  Identities=14%  Similarity=0.094  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|++.|.......+.|.+.        ++|..++.++....++|..+++.+..++-++.||++.|
T Consensus        93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~--------~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f  164 (495)
T PRK14995         93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEE--------KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVF  164 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHH
Confidence            4567778888899999999888888787877532        46788999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALC  125 (187)
Q Consensus       113 ~i~~v~~~val~~  125 (187)
                      .+.....++.+++
T Consensus       165 ~i~~~~~~~~~~l  177 (495)
T PRK14995        165 LINVPIVLVVMGL  177 (495)
T ss_pred             HHHHHHHHHHHHH
Confidence            9877655554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.50  E-value=0.00048  Score=60.49  Aligned_cols=85  Identities=16%  Similarity=0.028  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|.. ++.....++.+++         ++|....+++..+.++|..+++.+.+++.++.|||..|
T Consensus        78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~---------~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f  147 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIRE---------ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLI  147 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence            4567888888899999865 4444455777663         46788899999999999999999999999999999999


Q ss_pred             hhhHHH-HHHHHHHHH
Q 029822          113 GIPAAI-MLLSALCFF  127 (187)
Q Consensus       113 ~i~~v~-~~val~~f~  127 (187)
                      .+.++. .+..+++++
T Consensus       148 ~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903       148 IPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            885554 333343333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.50  E-value=0.0003  Score=59.22  Aligned_cols=84  Identities=13%  Similarity=0.181  Sum_probs=71.0

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|..-+...+...|.+++         ++|...+.++....++|.++++.+..++.++.+|++.|
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  151 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA---------SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAF  151 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH---------HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHH
Confidence            456777888899999999999999999998874         46788899999999999999999999988899999999


Q ss_pred             hhhHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALC  125 (187)
Q Consensus       113 ~i~~v~~~val~~  125 (187)
                      .+.++..++..+.
T Consensus       152 ~~~~~~~~~~~~~  164 (399)
T TIGR00893       152 IIEGVLGIIWGVL  164 (399)
T ss_pred             HHHHHHHHHHHHH
Confidence            9888765554444

>PRK03545 putative arabinose transporter; Provisional

Probab=97.47  E-value=0.00036  Score=60.69  Aligned_cols=84  Identities=13%  Similarity=0.131  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|..-|...++..|.+++         ++|...++++..+.++|..+++.+..++.+.+||++.|
T Consensus        96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~---------~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f  166 (390)
T PRK03545         96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA---------GKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTF  166 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHH
Confidence            345666777788888888888888999999874         34677888888899999999999999988889999999


Q ss_pred             hhhHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALC  125 (187)
Q Consensus       113 ~i~~v~~~val~~  125 (187)
                      .+.++..++..+.
T Consensus       167 ~~~~~~~~l~~~~  179 (390)
T PRK03545        167 LAIGGGALITLLL  179 (390)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988765555443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.44  E-value=0.00042  Score=49.85  Aligned_cols=84  Identities=15%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...+++...+.+++.+..-+...+...|.++++         .+....++++...++|..+++.+..++-+..||+..|.
T Consensus        51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  121 (141)
T TIGR00880        51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPE---------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFL  121 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh---------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHH
Confidence            345566677788888888888888888888753         45678888889999999999999999999899999998


Q ss_pred             hhHHHHHHHHHHH
Q 029822          114 IPAAIMLLSALCF  126 (187)
Q Consensus       114 i~~v~~~val~~f  126 (187)
                      +..+..+++.+..
T Consensus       122 ~~~~~~~~~~~~~  134 (141)
T TIGR00880       122 FLAILALAAFILL  134 (141)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887666655543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.43  E-value=0.00042  Score=61.42  Aligned_cols=84  Identities=18%  Similarity=0.213  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|+..+...++..|.+++         ++|...+.+++.+.++|..+++.+.+++.+++||++.|
T Consensus        89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~---------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f  159 (485)
T TIGR00711        89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP---------EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF  159 (485)
T ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence            355677788888999999999999999999874         45677889999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALC  125 (187)
Q Consensus       113 ~i~~v~~~val~~  125 (187)
                      .+.+...+++++.
T Consensus       160 ~~~~~~~~~~~~~  172 (485)
T TIGR00711       160 LINVPIGIIVVVV  172 (485)
T ss_pred             hhhhHHHHHHHHH
Confidence            9887655444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=97.39  E-value=0.00058  Score=58.04  Aligned_cols=82  Identities=20%  Similarity=0.195  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|..-+...++.+|.+++         +.+...++++..+.++|..+++.+.+++.++.||+..|
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~  174 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK---------RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLF  174 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCH---------HhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeeh
Confidence            345677788889999999999999999999874         35677888999999999999999999999999999999


Q ss_pred             hhhHHHHHHHH
Q 029822          113 GIPAAIMLLSA  123 (187)
Q Consensus       113 ~i~~v~~~val  123 (187)
                      .+.++..++..
T Consensus       175 ~~~~~~~~~~~  185 (398)
T TIGR00895       175 YVGGIAPLLLL  185 (398)
T ss_pred             hhhhhHHHHHH
Confidence            99865443333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.38  E-value=0.00047  Score=59.76  Aligned_cols=84  Identities=20%  Similarity=0.274  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhh---hhheeccCcce
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLI---VYIQDNLGWKV  110 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~---~~i~~~~gw~~  110 (187)
                      .+.++++..+.++|.|+.-+...++.+|.+++         ++|.....+++++.++|.++++.+.   ..+.+..||++
T Consensus       127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~---------~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~  197 (481)
T TIGR00879       127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPK---------ALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI  197 (481)
T ss_pred             hHHHHHHHHHHHhhhhHHHhHHHHHHHccCCh---------hhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHH
Confidence            35778888999999999999999999998874         3456788899999999999999988   67777889999


Q ss_pred             ehhhhHHHHHHHHHHH
Q 029822          111 GFGIPAAIMLLSALCF  126 (187)
Q Consensus       111 gF~i~~v~~~val~~f  126 (187)
                      .|.+.++..++.++.+
T Consensus       198 ~f~~~~~~~~~~~~~~  213 (481)
T TIGR00879       198 PLGLQLIPAGLLFLGL  213 (481)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999776655554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.37  E-value=0.00052  Score=60.35  Aligned_cols=83  Identities=19%  Similarity=0.327  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +.+.+++...+.+++.|...|...++..|.+++         +++.....+++.+.|+|..+++.+..++.+..||+..|
T Consensus       107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~---------~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f  177 (394)
T PRK10213        107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPP---------RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVF  177 (394)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence            456777788888999999999999999999864         35677888999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHH
Q 029822          113 GIPAAIMLLSAL  124 (187)
Q Consensus       113 ~i~~v~~~val~  124 (187)
                      .+.++..++.++
T Consensus       178 ~~~~~l~~~~~l  189 (394)
T PRK10213        178 NAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            988765544443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.33  E-value=0.00075  Score=59.19  Aligned_cols=85  Identities=18%  Similarity=0.111  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...+++...+.+++.|...+...+...|.+++         +++.+...++++..++|..+++.+..++-+..||++.|.
T Consensus       110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~  180 (417)
T PRK10489        110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGR---------ENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYG  180 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH---------HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHH
Confidence            34555566666777777777777777777763         345667788888999999999999999888889999999


Q ss_pred             hhHHHHHHHHHHHH
Q 029822          114 IPAAIMLLSALCFF  127 (187)
Q Consensus       114 i~~v~~~val~~f~  127 (187)
                      +.++..+++.+..+
T Consensus       181 ~~~~~~~~~~~~~~  194 (417)
T PRK10489        181 LAAAGTFITLLPLL  194 (417)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877666655433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.33  E-value=0.00056  Score=56.80  Aligned_cols=84  Identities=26%  Similarity=0.332  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|...+...++..|.++++         +|...+++++.+.++|..+++.+..++.+..+|+..|
T Consensus        86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  156 (352)
T cd06174          86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK---------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLF  156 (352)
T ss_pred             cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc---------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3566777888899999999999999999998852         4577889999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALC  125 (187)
Q Consensus       113 ~i~~v~~~val~~  125 (187)
                      .+.++..+++.+.
T Consensus       157 ~~~~~~~~~~~~~  169 (352)
T cd06174         157 LILAILGLLLALL  169 (352)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988776665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00901 2A0125 AmpG-related permease

Probab=97.32  E-value=0.0014  Score=55.91  Aligned_cols=86  Identities=20%  Similarity=0.105  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC-----
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG-----  107 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g-----  107 (187)
                      +...++....+.+++.+...+...++..|.+++         ++|.....+...+.++|.++++.+..++....|     
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~---------~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~  152 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSD---------EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL  152 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---------hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            344444444456677777788888999999864         356678888888999999999988888877777     


Q ss_pred             ---cceehhhhHHHHHHHHHHHH
Q 029822          108 ---WKVGFGIPAAIMLLSALCFF  127 (187)
Q Consensus       108 ---w~~gF~i~~v~~~val~~f~  127 (187)
                         |+..|.+.++..++++++.+
T Consensus       153 ~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       153 ITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHH
Confidence               99999999987777665533

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.25  E-value=0.0015  Score=56.73  Aligned_cols=83  Identities=19%  Similarity=0.127  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...++++..+.++|.|..-+...++..|.+++         ++|....++++...++|..+++.+..++.+..||+..|.
T Consensus        91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~---------~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~  161 (392)
T PRK10473         91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD---------RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY  161 (392)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence            34556666778888888888888888888874         356778888999999999999988888888899999999


Q ss_pred             hhHHHHHHHHHH
Q 029822          114 IPAAIMLLSALC  125 (187)
Q Consensus       114 i~~v~~~val~~  125 (187)
                      +.++..++..+.
T Consensus       162 ~~~~~~~i~~~~  173 (392)
T PRK10473        162 TMAAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHHHH
Confidence            887765554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.24  E-value=0.001  Score=57.76  Aligned_cols=83  Identities=20%  Similarity=0.206  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|...+...+...|.+++         +++....++++.+.++|.++++.+..++.+..+|+..|
T Consensus       102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  172 (406)
T PRK11551        102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP---------RLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIF  172 (406)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence            345566777888899999999999999999864         35677889999999999999999888888889999999


Q ss_pred             hhhHHHHHHHHH
Q 029822          113 GIPAAIMLLSAL  124 (187)
Q Consensus       113 ~i~~v~~~val~  124 (187)
                      .+.++..++..+
T Consensus       173 ~~~~~~~~~~~~  184 (406)
T PRK11551        173 YVGGVGPLLLVP  184 (406)
T ss_pred             HHHHHHHHHHHH
Confidence            988765544443

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.22  E-value=0.001  Score=59.10  Aligned_cols=78  Identities=13%  Similarity=0.174  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...+++...+.+++.|..-+...+...+.|++         +++.....+++.+.++|+.+++.+..++.+.+||++.|.
T Consensus       111 ~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~---------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~  181 (434)
T PRK11663        111 LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR---------TERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMM  181 (434)
T ss_pred             HHHHHHHHHHHHHHHHccchHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            34444555566788888888888999999874         356778899999999999999999999988999999999


Q ss_pred             hhHHHHH
Q 029822          114 IPAAIML  120 (187)
Q Consensus       114 i~~v~~~  120 (187)
                      +.++..+
T Consensus       182 ~~~i~~~  188 (434)
T PRK11663        182 IAGIIAI  188 (434)
T ss_pred             HHHHHHH
Confidence            8876543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.21  E-value=0.0012  Score=58.22  Aligned_cols=83  Identities=19%  Similarity=0.271  Sum_probs=67.6

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +.+.+++...+.++|.|...|...+...|.+++         +++....++++...++|..+++.+.+++. ++||+..|
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f  167 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP---------HQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVC  167 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHH
Confidence            345677777788888888889988888888763         35778999999999999999999999998 78999999


Q ss_pred             hhhHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALC  125 (187)
Q Consensus       113 ~i~~v~~~val~~  125 (187)
                      .+.++..++..+.
T Consensus       168 ~~~~~~~~~~~i~  180 (400)
T PRK11646        168 ATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988765555433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.21  E-value=0.0019  Score=57.60  Aligned_cols=81  Identities=7%  Similarity=0.130  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc-Ccceeh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL-GWKVGF  112 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~-gw~~gF  112 (187)
                      ...+++...+.++|.|+.-|.......+.+++         +++..+..+++.+.++|..+++.+..++.+.. ||+..|
T Consensus       131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f  201 (465)
T TIGR00894       131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPP---------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIF  201 (465)
T ss_pred             chHHHHHHHHHHHhcccchhhHHHHHHhcCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeh
Confidence            34567777788999999999999999988874         45778889999999999999999999998884 999999


Q ss_pred             hhhHHHHHHHH
Q 029822          113 GIPAAIMLLSA  123 (187)
Q Consensus       113 ~i~~v~~~val  123 (187)
                      .+.++..++..
T Consensus       202 ~i~~~~~~~~~  212 (465)
T TIGR00894       202 YVFGIVGCAWS  212 (465)
T ss_pred             hhhhHHHHHHH
Confidence            99887544433

>PRK12382 putative transporter; Provisional

Probab=97.18  E-value=0.001  Score=57.66  Aligned_cols=85  Identities=13%  Similarity=0.031  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGI  114 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i  114 (187)
                      ..++++..+.++|.|..-|.......+.+++         +++.+.+.+++...++|..+++.+.+++.+++||+..|.+
T Consensus       303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---------~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~  373 (392)
T PRK12382        303 WVALAGAALTGAGCSLIFPALGVEVVKRVPS---------QVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLA  373 (392)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            3445566667788887777777777776653         4678899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHh
Q 029822          115 PAAIMLLSALCFFL  128 (187)
Q Consensus       115 ~~v~~~val~~f~~  128 (187)
                      .++..++++++.+.
T Consensus       374 ~~~~~~~~~~~~~~  387 (392)
T PRK12382        374 GAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99888787776543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.14  E-value=0.0014  Score=64.93  Aligned_cols=83  Identities=13%  Similarity=0.079  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +.+.+++...+.++|.+.+.|...+++.|.++++         ++....+++.++.++|.++++.+.+++-+..||+..|
T Consensus       107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~---------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~  177 (1140)
T PRK06814        107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD---------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV  177 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc---------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            4667888889999999999999999999999853         4566889999999999999999999998899999998


Q ss_pred             hhhHHHHHHHHH
Q 029822          113 GIPAAIMLLSAL  124 (187)
Q Consensus       113 ~i~~v~~~val~  124 (187)
                      .+.++..+++++
T Consensus       178 ~~~~~~~~~~~~  189 (1140)
T PRK06814        178 ALLMGIAVLGWL  189 (1140)
T ss_pred             HHHHHHHHHHHH
Confidence            444444433333

>PRK10504 putative transporter; Provisional

Probab=97.14  E-value=0.0025  Score=56.73  Aligned_cols=86  Identities=14%  Similarity=0.166  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...++++..+.++|.|...|...+...|.+++         +++...+.++....++|..+++.+..++.++.||++.|.
T Consensus        98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPR---------EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH---------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            45567778889999999999888888888763         356678888999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHh
Q 029822          114 IPAAIMLLSALCFFL  128 (187)
Q Consensus       114 i~~v~~~val~~f~~  128 (187)
                      +......++.+....
T Consensus       169 ~~~~~~~l~~~~~~~  183 (471)
T PRK10504        169 INIPVGIIGAIATLM  183 (471)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            987665555544433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.12  E-value=0.0027  Score=55.56  Aligned_cols=85  Identities=19%  Similarity=0.170  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheec-cCccee
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDN-LGWKVG  111 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~-~gw~~g  111 (187)
                      +...+++...+.++..+...|...++..|.+++         ++|.++..+..++.++|.+++..+..++-+. .||+..
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~---------~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~  163 (402)
T PRK11902         93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP---------EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNT  163 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---------hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHH
Confidence            444455554556777888889999999998764         2456677777788899999998888887775 599999


Q ss_pred             hhhhHHHHHHHHHHH
Q 029822          112 FGIPAAIMLLSALCF  126 (187)
Q Consensus       112 F~i~~v~~~val~~f  126 (187)
                      |.+.++..++..+..
T Consensus       164 f~i~a~~~l~~~l~~  178 (402)
T PRK11902        164 YLLMAGLMLAGALTT  178 (402)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999887766655543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.07  E-value=0.0012  Score=58.41  Aligned_cols=80  Identities=26%  Similarity=0.451  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhe--------ec
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQ--------DN  105 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~--------~~  105 (187)
                      ...+.+...+.++|.|+.-|...++.+|.++++         +|..+.++.+.+.+.|.+++..+...+.        ..
T Consensus       124 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~---------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  194 (432)
T PRK10406        124 PALLLLARLFQGLSVGGEYGTSATYMSEVAVEG---------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELRE  194 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc
Confidence            346777888999999999999999999998752         3455677888888999888876655543        25


Q ss_pred             cCcceehhhhHHHHHHH
Q 029822          106 LGWKVGFGIPAAIMLLS  122 (187)
Q Consensus       106 ~gw~~gF~i~~v~~~va  122 (187)
                      +|||..|.+.++..++.
T Consensus       195 ~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        195 WGWRIPFALGAVLAVVA  211 (432)
T ss_pred             cchHHHHHHHHHHHHHH
Confidence            89999999877755444

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.06  E-value=0.0013  Score=57.41  Aligned_cols=80  Identities=15%  Similarity=0.287  Sum_probs=66.4

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|+.-+...++..|.+++         ++|....+++..+.++|.++++.+.+++.+.+||+..|
T Consensus       105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f  175 (426)
T PRK12307        105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPK---------HLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF  175 (426)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH---------hHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHH
Confidence            456777888889999999999999999998874         34566788888999999999999999998999999999


Q ss_pred             hhhHHHHHH
Q 029822          113 GIPAAIMLL  121 (187)
Q Consensus       113 ~i~~v~~~v  121 (187)
                      .+.++..++
T Consensus       176 ~i~~~~~~~  184 (426)
T PRK12307        176 FVGLLPVLL  184 (426)
T ss_pred             HHHHHHHHH
Confidence            986654433

>PRK10054 putative transporter; Provisional

Probab=97.06  E-value=0.0017  Score=57.14  Aligned_cols=79  Identities=16%  Similarity=0.143  Sum_probs=59.5

Q ss_pred             HHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhH
Q 029822           37 LYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPA  116 (187)
Q Consensus        37 ~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~  116 (187)
                      +++...+++.+.+.+.|...+...|.+++         +++.+.++++|...|+|..+++.+..++.+ .||+..|.+.+
T Consensus        99 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~  168 (395)
T PRK10054         99 VVLFFALINCAYSVFSTVLKAWFADNLSS---------TSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA  168 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence            33334445555566667777777777653         457789999999999999999999999875 79999999988


Q ss_pred             HHHHHHHHH
Q 029822          117 AIMLLSALC  125 (187)
Q Consensus       117 v~~~val~~  125 (187)
                      +..+++++.
T Consensus       169 ~~~~i~~i~  177 (395)
T PRK10054        169 ICSAFPLVF  177 (395)
T ss_pred             HHHHHHHHH
Confidence            877666543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.04  E-value=0.0029  Score=54.92  Aligned_cols=80  Identities=16%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...++++..+.++|.|...+....+..|.+++         +++.....++..+..+|.++++.+..++.+..||+..|.
T Consensus        96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~  166 (394)
T PRK11652         96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEG---------TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYL  166 (394)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence            45566677777888887777777777777763         245566777778889999999998888888899999999


Q ss_pred             hhHHHHHHH
Q 029822          114 IPAAIMLLS  122 (187)
Q Consensus       114 i~~v~~~va  122 (187)
                      +.++..++.
T Consensus       167 ~~~~~~~~~  175 (394)
T PRK11652        167 FLLLLGAGV  175 (394)
T ss_pred             HHHHHHHHH
Confidence            887654443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.04  E-value=0.0017  Score=56.48  Aligned_cols=84  Identities=8%  Similarity=0.186  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|...+....+..+.+++         +++......+..+.++|..+++.+..++-+..||++.|
T Consensus        90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f  160 (382)
T PRK10091         90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP---------GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF  160 (382)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh---------HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHH
Confidence            456677788888899888888777777777654         24555677777889999999988888888889999999


Q ss_pred             hhhHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALC  125 (187)
Q Consensus       113 ~i~~v~~~val~~  125 (187)
                      .+.++..++..+.
T Consensus       161 ~~~~~~~~~~~~~  173 (382)
T PRK10091        161 LLIAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988765554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.04  E-value=0.0038  Score=56.82  Aligned_cols=84  Identities=15%  Similarity=0.171  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee-ccCccee
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD-NLGWKVG  111 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~-~~gw~~g  111 (187)
                      +...+++...+.+++.+...+...++..|.+++         +++.....+.-++.++|.+++..+..++.+ ..||+..
T Consensus       106 ~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~---------~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~  176 (491)
T PRK11010        106 QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA---------EERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGM  176 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence            456666677778888888888999999999874         245667778888899999999988888888 5799999


Q ss_pred             hhhhHHHHHHHHHH
Q 029822          112 FGIPAAIMLLSALC  125 (187)
Q Consensus       112 F~i~~v~~~val~~  125 (187)
                      |.+.++.+++..+.
T Consensus       177 f~i~a~l~ll~~l~  190 (491)
T PRK11010        177 YWLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988776665554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.02  E-value=0.00071  Score=58.48  Aligned_cols=85  Identities=14%  Similarity=0.154  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGI  114 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i  114 (187)
                      ..+++...+.+++.|...|...+...+..++         +.+.+.+.+++...++|..+++.+..++.++.||+..|.+
T Consensus       312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~  382 (408)
T PRK09874        312 LQLGILRFLLGAADGALLPAVQTLLVYNSSN---------QIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLV  382 (408)
T ss_pred             HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCc---------ccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHH
Confidence            4455566677888888888877776555432         2456678888889999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHh
Q 029822          115 PAAIMLLSALCFFL  128 (187)
Q Consensus       115 ~~v~~~val~~f~~  128 (187)
                      .++..+++.+..+.
T Consensus       383 ~~~~~l~~~~~~~~  396 (408)
T PRK09874        383 TAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99887777665444

>PRK11043 putative transporter; Provisional

Probab=96.94  E-value=0.0026  Score=55.28  Aligned_cols=83  Identities=19%  Similarity=0.159  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...++++..+.++|.+..-+...++..|.+++         +++...++......++|..+++.+..++.+.+||+..|.
T Consensus        94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~  164 (401)
T PRK11043         94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA---------QKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFA  164 (401)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            45566677777888887777777888888874         244556777777889999999999999999999999999


Q ss_pred             hhHHHHHHHHHH
Q 029822          114 IPAAIMLLSALC  125 (187)
Q Consensus       114 i~~v~~~val~~  125 (187)
                      +.++..++..+.
T Consensus       165 ~~~~~~~~~~~~  176 (401)
T PRK11043        165 TLFAITLLLILP  176 (401)
T ss_pred             HHHHHHHHHHHH
Confidence            887765555443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=96.91  E-value=0.0013  Score=55.36  Aligned_cols=83  Identities=14%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHh-hhhhhheeccCccee
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAV-TLIVYIQDNLGWKVG  111 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~-~~~~~i~~~~gw~~g  111 (187)
                      +...++++..+.++|.|..-+...++..|.+++         +++...+.++..+.++|..+++ .+...+.+..+|+..
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  152 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR---------SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWV  152 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCH---------hhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhH
Confidence            456677788888999999999999999999875         2456677888889999999998 566777788899999


Q ss_pred             hhhhHHHHHHHHH
Q 029822          112 FGIPAAIMLLSAL  124 (187)
Q Consensus       112 F~i~~v~~~val~  124 (187)
                      |.+.++..++..+
T Consensus       153 ~~~~~~~~~~~~~  165 (379)
T TIGR00881       153 FIVPGIIAIIVSL  165 (379)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988876544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=96.89  E-value=0.0024  Score=57.06  Aligned_cols=81  Identities=19%  Similarity=0.242  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|+..+...++..|.+++         +++...+.+++.+.++|.++++.+..++-+++||+..|
T Consensus       107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f  177 (496)
T PRK03893        107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK---------HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALF  177 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence            456677788888999999999999999999874         45677788889999999999999999999999999999


Q ss_pred             hhhHHHHHHH
Q 029822          113 GIPAAIMLLS  122 (187)
Q Consensus       113 ~i~~v~~~va  122 (187)
                      .+.++..++.
T Consensus       178 ~~~~~~~~~~  187 (496)
T PRK03893        178 FIGILPIIFA  187 (496)
T ss_pred             HHHHHHHHHH
Confidence            8865544433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=96.87  E-value=0.0028  Score=56.05  Aligned_cols=79  Identities=15%  Similarity=0.160  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee------ccC
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD------NLG  107 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~------~~g  107 (187)
                      ...++++..+.++|.|+.-|.......+-|++         ++|.....++..+.++|..+++.+..++.+      ..|
T Consensus        96 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~---------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g  166 (412)
T TIGR02332        96 PESLYLLRILVGIAEAGFLPGILLYLTFWFPA---------YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKG  166 (412)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence            46677888899999999988888888888884         356778888889999999999888877753      479


Q ss_pred             cceehhhhHHHHHH
Q 029822          108 WKVGFGIPAAIMLL  121 (187)
Q Consensus       108 w~~gF~i~~v~~~v  121 (187)
                      |+..|.+.++..++
T Consensus       167 wr~~f~~~~~~~l~  180 (412)
T TIGR02332       167 WQWLFLLEGFPSVI  180 (412)
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999997765444

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=96.86  E-value=0.0032  Score=53.84  Aligned_cols=83  Identities=18%  Similarity=0.255  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC--cce
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG--WKV  110 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g--w~~  110 (187)
                      +...++++..+.++|.|+..+...++..|.+++         +++.....++..+.++|..+++.+...+.+..+  |+.
T Consensus        99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~  169 (405)
T TIGR00891        99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPK---------HLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRA  169 (405)
T ss_pred             cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH
Confidence            345677788889999999999999999998874         346778889999999999999988888877666  999


Q ss_pred             ehhhhHHHHHHHHH
Q 029822          111 GFGIPAAIMLLSAL  124 (187)
Q Consensus       111 gF~i~~v~~~val~  124 (187)
                      .|.+.++..++.++
T Consensus       170 ~f~~~~~~~~~~~~  183 (405)
T TIGR00891       170 LFFISILPIIFALW  183 (405)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99887665544443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=96.83  E-value=0.0047  Score=51.19  Aligned_cols=84  Identities=26%  Similarity=0.219  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...+++...+.+++.+...+.......+.+++         +.+...+..+.+..++|..+++.+..++.++.||+..|.
T Consensus       265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~  335 (352)
T cd06174         265 LALLLVALLLLGFGLGFAFPALLTLASELAPP---------EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFL  335 (352)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHhhcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHH
Confidence            45667778888999999999999999988874         357888899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH
Q 029822          114 IPAAIMLLSALCF  126 (187)
Q Consensus       114 i~~v~~~val~~f  126 (187)
                      +.++..+++.+.+
T Consensus       336 ~~~~~~~i~~i~~  348 (352)
T cd06174         336 ILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHh
Confidence            9998877776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.82  E-value=0.0042  Score=52.82  Aligned_cols=83  Identities=17%  Similarity=0.181  Sum_probs=56.3

Q ss_pred             HHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhh
Q 029822           36 LLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIP  115 (187)
Q Consensus        36 ~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~  115 (187)
                      .+++...+++.+.+..-|...++..+..++++       +.+..+..+.+...++|..+++.+..++.+..||+..|.+.
T Consensus        89 ~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        89 LLLVLGVLLSSFASTANPQLFALAREHADRTG-------REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-------hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence            34444444555555666766666666554221       22223456777788999999999999998889999999998


Q ss_pred             HHHHHHHHHH
Q 029822          116 AAIMLLSALC  125 (187)
Q Consensus       116 ~v~~~val~~  125 (187)
                      ++..++..+.
T Consensus       162 ~~~~~~~~~~  171 (375)
T TIGR00899       162 ALAFVLCGVL  171 (375)
T ss_pred             HHHHHHHHHH
Confidence            8876555444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.81  E-value=0.0026  Score=57.42  Aligned_cols=108  Identities=17%  Similarity=0.184  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      ..++++++..+=++|.....-+-.++.||-|.++.        .|.+....---++.+|.++++...+.+=|..|+.+.|
T Consensus       158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~--------er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF  229 (464)
T KOG3764|consen  158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN--------ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF  229 (464)
T ss_pred             hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch--------hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence            45688899999999999999999999999999753        3555666666679999999999999999999999999


Q ss_pred             hhhHHHHHHHHHH-HHhcCCceeec--CCCCChhHHHHH
Q 029822          113 GIPAAIMLLSALC-FFLASPFYVKS--KANTSLLSGLIQ  148 (187)
Q Consensus       113 ~i~~v~~~val~~-f~~g~~~y~~~--~p~gs~l~~~~~  148 (187)
                      +|.++.+++...+ |+.-++.-...  .+++.++.++.+
T Consensus       230 lVL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll~  268 (464)
T KOG3764|consen  230 LVLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLLM  268 (464)
T ss_pred             HHHHHHHHHHHHHHHheeCccccCccccccCccHHHHHh
Confidence            9999988776655 44444433332  578888888764

>PRK12382 putative transporter; Provisional

Probab=96.74  E-value=0.005  Score=53.38  Aligned_cols=77  Identities=12%  Similarity=0.227  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      ....++++..+.++|.+..-+...+.+.|.+++         ++|....+++..+.+.|..+++.+..++.+.+||+..+
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~---------~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~  181 (392)
T PRK12382        111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGP---------KHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALA  181 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc---------cccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence            456677788888999998888888888888764         24566788888899999999999999988889998776


Q ss_pred             hhhHHH
Q 029822          113 GIPAAI  118 (187)
Q Consensus       113 ~i~~v~  118 (187)
                      .+..+.
T Consensus       182 ~~~~~~  187 (392)
T PRK12382        182 LTTMVL  187 (392)
T ss_pred             HHHHHH
Confidence            665443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.71  E-value=0.0064  Score=51.43  Aligned_cols=82  Identities=22%  Similarity=0.325  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhe--------ecc
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQ--------DNL  106 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~--------~~~  106 (187)
                      .+++++..+.++|.|+.-+...++..|.++++         +|.....++..+.++|.++++.+...+.        +.+
T Consensus        97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~  167 (394)
T TIGR00883        97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPG---------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEW  167 (394)
T ss_pred             HHHHHHHHHHHhhccccccccHHHhhhcCCcc---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhcc
Confidence            35677778889999999999999999888642         4566778888888899988877655543        357


Q ss_pred             CcceehhhhHHHHHHHHHH
Q 029822          107 GWKVGFGIPAAIMLLSALC  125 (187)
Q Consensus       107 gw~~gF~i~~v~~~val~~  125 (187)
                      +|+..|.+.++..+++++.
T Consensus       168 ~w~~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       168 GWRIPFLVSAVLVLIGLYL  186 (394)
T ss_pred             chHHHHHHHHHHHHHHHHH
Confidence            9999999888766665544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=96.68  E-value=0.0029  Score=53.27  Aligned_cols=79  Identities=13%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             HHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhH
Q 029822           37 LYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPA  116 (187)
Q Consensus        37 ~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~  116 (187)
                      ++....+.+++.|+.-+...++..|.+++         +++.+.+.+++...++|..+++.+.+++.++.||+..|.+.+
T Consensus       298 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~  368 (377)
T TIGR00890       298 FLATVALVFFTWGGTISLFPSLVSDIFGP---------ANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTG  368 (377)
T ss_pred             HHHHHHHHHHHhccchhccHHHHHHHhhh---------hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Confidence            33445566677777777777788888764         346778889999999999999999999999999999999988


Q ss_pred             HHHHHHHH
Q 029822          117 AIMLLSAL  124 (187)
Q Consensus       117 v~~~val~  124 (187)
                      +..+++++
T Consensus       369 ~~~~~~~~  376 (377)
T TIGR00890       369 AFALTSLA  376 (377)
T ss_pred             HHHHHhcc
Confidence            87766653

>PRK03699 putative transporter; Provisional

Probab=96.67  E-value=0.0076  Score=52.59  Aligned_cols=84  Identities=13%  Similarity=0.124  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhh-eeccCccee
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYI-QDNLGWKVG  111 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i-~~~~gw~~g  111 (187)
                      +...++++..+.+++.|...++..+...+.+++         +++.......+...++|+.+++....++ .+..||+..
T Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~---------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~  164 (394)
T PRK03699         94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEG---------KQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWV  164 (394)
T ss_pred             hHHHHHHHHHHHHHhhHhhccchhHHhhhhccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            345677777888899998888888999998854         2345566666777888888888877776 456899999


Q ss_pred             hhhhHHHHHHHHHH
Q 029822          112 FGIPAAIMLLSALC  125 (187)
Q Consensus       112 F~i~~v~~~val~~  125 (187)
                      |.+.++..++..+.
T Consensus       165 f~~~~~~~~~~~~~  178 (394)
T PRK03699        165 YACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99877765554443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.65  E-value=0.005  Score=54.65  Aligned_cols=81  Identities=11%  Similarity=0.085  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhh-heeccCcceeh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVY-IQDNLGWKVGF  112 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~-i~~~~gw~~gF  112 (187)
                      ...+++...+.+++.|...+.......|.+++         +++...+++++.+.++|+.+++.+..+ +.++.||+..|
T Consensus       118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~---------~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f  188 (438)
T TIGR00712       118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ---------SERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAAL  188 (438)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc---------ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHH
Confidence            34556666778888888888888888888874         246778889999999999888776665 45567999999


Q ss_pred             hhhHHHHHHHH
Q 029822          113 GIPAAIMLLSA  123 (187)
Q Consensus       113 ~i~~v~~~val  123 (187)
                      .+.++..++..
T Consensus       189 ~~~~~~~~i~~  199 (438)
T TIGR00712       189 YFPAICAIIVA  199 (438)
T ss_pred             HHHHHHHHHHH
Confidence            99887655543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=96.62  E-value=0.0039  Score=56.39  Aligned_cols=79  Identities=22%  Similarity=0.269  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhe--------eccC
Q 029822           36 LLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQ--------DNLG  107 (187)
Q Consensus        36 ~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~--------~~~g  107 (187)
                      ++.+...+.++|.|+.-++..++.+|.++++         +|.....++..+.++|..++..+...+.        .++|
T Consensus       120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~---------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~g  190 (490)
T PRK10642        120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDR---------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWG  190 (490)
T ss_pred             HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC---------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCcc
Confidence            4777788899999999999999999998753         2344566677777777777765543332        3689


Q ss_pred             cceehhhhHHHHHHHH
Q 029822          108 WKVGFGIPAAIMLLSA  123 (187)
Q Consensus       108 w~~gF~i~~v~~~val  123 (187)
                      ||+.|.+.++..++++
T Consensus       191 WR~~f~i~~~~~l~~~  206 (490)
T PRK10642        191 WRIPFFIALPLGIIGL  206 (490)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999765444333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=96.62  E-value=0.0061  Score=52.66  Aligned_cols=82  Identities=17%  Similarity=0.180  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...++++..+.+++.+ +-+...+...|++++         +++.....++..+.++|.++++.+..++.+..||+..|.
T Consensus       107 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  176 (408)
T PRK09874        107 IWQFLILRALLGLLGG-FVPNANALIATQVPR---------NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFF  176 (408)
T ss_pred             HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            4556666666777654 446666777777653         345667788888999999999999999988899999999


Q ss_pred             hhHHHHHHHHHH
Q 029822          114 IPAAIMLLSALC  125 (187)
Q Consensus       114 i~~v~~~val~~  125 (187)
                      +.++..++..+.
T Consensus       177 ~~~~~~~~~~~~  188 (408)
T PRK09874        177 ITASVLFLCFLV  188 (408)
T ss_pred             HHHHHHHHHHHH
Confidence            988776655543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.60  E-value=0.0045  Score=55.54  Aligned_cols=76  Identities=16%  Similarity=0.130  Sum_probs=58.4

Q ss_pred             HHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHH
Q 029822           42 GLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLL  121 (187)
Q Consensus        42 ~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~v  121 (187)
                      .+.++|.|..-+.......+-|.          ++|.....+++.+.++|..+++.+.+++.+.+||++.|.+.++..++
T Consensus       116 ~l~G~~~~~~~~~~~~~~~~~~~----------~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~  185 (455)
T TIGR00892       116 FITGLGLAFNFQPSLTMLGKYFY----------RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLH  185 (455)
T ss_pred             HHHHhcchhhhhHHHHHHHHHHH----------hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            45677777654444566677663          34677888999999999999999999999999999999999987666


Q ss_pred             HHHHHH
Q 029822          122 SALCFF  127 (187)
Q Consensus       122 al~~f~  127 (187)
                      +.+..+
T Consensus       186 ~~v~~~  191 (455)
T TIGR00892       186 CCVCGA  191 (455)
T ss_pred             HHHHHH
Confidence            554433

>TIGR00788 fbt folate/biopterin transporter

Probab=96.58  E-value=0.0051  Score=55.75  Aligned_cols=80  Identities=20%  Similarity=0.160  Sum_probs=65.8

Q ss_pred             HHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHH
Q 029822           39 LAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAI  118 (187)
Q Consensus        39 ~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~  118 (187)
                      +.+.+++++.+......-++..|+.+ +++      +......++.|.+.++|.+++..+.+++.+.+||+..|.+.++.
T Consensus       125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~------~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l  197 (468)
T TIGR00788       125 AFIFLAALAKALYDVLVDSLYSERIR-ESP------SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAAL  197 (468)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhhh-cCC------CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            36778899999999999999999988 333      23455668899999999999999999999999999999998887


Q ss_pred             HHHHHHH
Q 029822          119 MLLSALC  125 (187)
Q Consensus       119 ~~val~~  125 (187)
                      .++.++.
T Consensus       198 ~ll~~~~  204 (468)
T TIGR00788       198 LLLQLFV  204 (468)
T ss_pred             HHHHHHH
Confidence            7666443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=96.58  E-value=0.0067  Score=51.01  Aligned_cols=82  Identities=22%  Similarity=0.193  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|...+...+...+.+++          +|.....++..+.++|.+++......+-+..||+..|
T Consensus        90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f  159 (377)
T TIGR00890        90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD----------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAF  159 (377)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc----------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHH
Confidence            345666777788888888777777777766642          3456778888899999887766667777778999999


Q ss_pred             hhhHHHHHHHHH
Q 029822          113 GIPAAIMLLSAL  124 (187)
Q Consensus       113 ~i~~v~~~val~  124 (187)
                      .+.++..++..+
T Consensus       160 ~~~~~~~~~~~~  171 (377)
T TIGR00890       160 IYMGIIFLLVIV  171 (377)
T ss_pred             HHHHHHHHHHHH
Confidence            998876555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.58  E-value=0.0048  Score=54.03  Aligned_cols=82  Identities=10%  Similarity=0.099  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc-Ccceeh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL-GWKVGF  112 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~-gw~~gF  112 (187)
                      ...++++..+.++|.|..-+.......+.|++          ++......+..+.+.|..++..+.+++.++. +|+..|
T Consensus        97 ~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~  166 (393)
T PRK09705         97 SALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ----------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTL  166 (393)
T ss_pred             hHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            45677788899999999999988888888752          3456777888889999999999999988775 899887


Q ss_pred             hhhHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALC  125 (187)
Q Consensus       113 ~i~~v~~~val~~  125 (187)
                      .+-++..+++++.
T Consensus       167 ~~~~~~~~~~~~~  179 (393)
T PRK09705        167 AWWALPAVVALFA  179 (393)
T ss_pred             HHHHHHHHHHHHH
Confidence            6655444444433

>TIGR00889 2A0110 nucleoside transporter

Probab=96.57  E-value=0.0048  Score=54.85  Aligned_cols=83  Identities=13%  Similarity=0.130  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHH-HHhhHhHHHHhhhhhhheec------c
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYY-VSVSASSMVAVTLIVYIQDN------L  106 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y-~~invG~li~~~~~~~i~~~------~  106 (187)
                      ...+++...+.+++.|...++...+.+|.+++         +.+.+.+.+++ +..++|+.+++.+.+++.++      +
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~---------~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~  378 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPV---------HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTF  378 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCC
Confidence            34566677778888888888888888998874         46788899997 56789999999999999887      4


Q ss_pred             CcceehhhhHHHHHHHHHH
Q 029822          107 GWKVGFGIPAAIMLLSALC  125 (187)
Q Consensus       107 gw~~gF~i~~v~~~val~~  125 (187)
                      ||+..|.+.++..+++.+.
T Consensus       379 ~~~~~f~~~~~~~~i~~~l  397 (418)
T TIGR00889       379 DWQTMWLFFAGYIAILAVL  397 (418)
T ss_pred             chHHHHHHHHHHHHHHHHH
Confidence            6999998887765554443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.56  E-value=0.0077  Score=55.30  Aligned_cols=91  Identities=10%  Similarity=0.107  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhh--eec-------
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYI--QDN-------  105 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i--~~~-------  105 (187)
                      ..+.+++.+.-++.....+...++++|..++++       ++....+.|+.+..++|++++..+..+.  .+.       
T Consensus       115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~-------~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~  187 (477)
T TIGR01301       115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDA-------RRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTE  187 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccc
Confidence            455666667777888888888999999998643       3456788999999999999998876654  111       


Q ss_pred             ------cCcceehhhhHHHHHHHHHHHHhcCCc
Q 029822          106 ------LGWKVGFGIPAAIMLLSALCFFLASPF  132 (187)
Q Consensus       106 ------~gw~~gF~i~~v~~~val~~f~~g~~~  132 (187)
                            .+.+..|.+.++.++++.++-+...+.
T Consensus       188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E  220 (477)
T TIGR01301       188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKE  220 (477)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence                  166788999998888877765554333

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.56  E-value=0.0094  Score=50.06  Aligned_cols=77  Identities=16%  Similarity=0.110  Sum_probs=60.8

Q ss_pred             HHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC-cceehhhhHHHHH
Q 029822           42 GLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG-WKVGFGIPAAIML  120 (187)
Q Consensus        42 ~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g-w~~gF~i~~v~~~  120 (187)
                      .+++.+..+..+...++.+|.+++         +.+...+.++....++|..+++.+.+++.+..| |...|.+.++..+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~  389 (399)
T TIGR00893       319 VALGFFGLGAGAIGWALISDNAPG---------NIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALAL  389 (399)
T ss_pred             HHHHHhchhhhhHHHHHHHhhcCh---------hHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHH
Confidence            333444444678888888888764         356788899999999999999999999999998 9999998888777


Q ss_pred             HHHHHHH
Q 029822          121 LSALCFF  127 (187)
Q Consensus       121 val~~f~  127 (187)
                      ++.+.++
T Consensus       390 ~~~~~~~  396 (399)
T TIGR00893       390 IGALSYL  396 (399)
T ss_pred             HHHHHHH
Confidence            7666543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=96.55  E-value=0.0053  Score=55.12  Aligned_cols=91  Identities=22%  Similarity=0.361  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCccee
Q 029822           32 SQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVG  111 (187)
Q Consensus        32 ~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~g  111 (187)
                      .+..++.++..+.++..|.+.+-..+..++.-.++         ++.+.-..-+.+..++..+|.-+..++.|.+|||..
T Consensus        99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~---------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~  169 (394)
T COG2814          99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPG---------KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT  169 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc---------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence            35678888999999999999999999999998753         567788888889999999998888999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhcCC
Q 029822          112 FGIPAAIMLLSALCFFLASP  131 (187)
Q Consensus       112 F~i~~v~~~val~~f~~g~~  131 (187)
                      |.+-++.-+++++..+..-|
T Consensus       170 F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         170 FLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhCC
Confidence            99999877777776666655

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=96.54  E-value=0.0075  Score=53.51  Aligned_cols=84  Identities=17%  Similarity=0.109  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhh--------ee
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYI--------QD  104 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i--------~~  104 (187)
                      ....++++..+.++|.|+.-|...++++|.++++         +|......+-.+..+|.+++..+...+        .+
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~---------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~  189 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH---------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLN  189 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence            3566778889999999999999999999999853         355566777777888888776543322        24


Q ss_pred             ccCcceehhhhHHHHHHHHHH
Q 029822          105 NLGWKVGFGIPAAIMLLSALC  125 (187)
Q Consensus       105 ~~gw~~gF~i~~v~~~val~~  125 (187)
                      .+||++.|.+.++..++.++.
T Consensus       190 ~~gWr~~f~~~~~~~~~~~~~  210 (479)
T PRK10077        190 TDGWRYMFASEAIPALLFLML  210 (479)
T ss_pred             cCChHHHHHHHHHHHHHHHHH
Confidence            579999999887765554443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.53  E-value=0.011  Score=51.31  Aligned_cols=79  Identities=19%  Similarity=0.167  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...+++...+.++|.|..-++..+...|.++++         +|.....++..+.++|..+++.+..++-+..||+..|.
T Consensus       112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~  182 (399)
T PRK05122        112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL---------HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGL  182 (399)
T ss_pred             HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh---------hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            445666777888999999999988888888643         34567788888889999999888888888899998888


Q ss_pred             hhHHHHHH
Q 029822          114 IPAAIMLL  121 (187)
Q Consensus       114 i~~v~~~v  121 (187)
                      +.++..++
T Consensus       183 ~~~~~~~~  190 (399)
T PRK05122        183 LIMLLALL  190 (399)
T ss_pred             HHHHHHHH
Confidence            76665433

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.42  E-value=0.007  Score=51.49  Aligned_cols=80  Identities=6%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             HHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHH
Q 029822           38 YLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAA  117 (187)
Q Consensus        38 ~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v  117 (187)
                      ++...+.+++.|..-+.......|.+++          ++.+....+++..++|..+++.+.+++.+..||+..|.+.++
T Consensus       292 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~  361 (375)
T TIGR00899       292 LMLQLLNAIFIGILAGIGMLYFQDLMPG----------RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIV  361 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcc----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            3333444566666666666666665532          234788999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q 029822          118 IMLLSALCFF  127 (187)
Q Consensus       118 ~~~val~~f~  127 (187)
                      ..+++.+..+
T Consensus       362 ~~~~~~~~~~  371 (375)
T TIGR00899       362 MLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHh
Confidence            8777776643

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.41  E-value=0.01  Score=53.21  Aligned_cols=85  Identities=12%  Similarity=0.106  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc-Ccceehh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL-GWKVGFG  113 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~-gw~~gF~  113 (187)
                      ..+++...+.+++.|..-++..++..|.+++         +++...+.++....++|..+++.+..++.+.. +|+..|.
T Consensus       334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~---------~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~  404 (455)
T TIGR00892       334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGA---------QRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFY  404 (455)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhhH---------HHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHH
Confidence            4455566677788888889988988888764         34567788999999999999999999999887 5999999


Q ss_pred             hhHHHHHHHHHHHHh
Q 029822          114 IPAAIMLLSALCFFL  128 (187)
Q Consensus       114 i~~v~~~val~~f~~  128 (187)
                      ++++.++++.+..+.
T Consensus       405 ~~~~~~li~~~~~~~  419 (455)
T TIGR00892       405 ASGSIVVSAGLFLAI  419 (455)
T ss_pred             HhhHHHHHHHHHHHH
Confidence            999877776654433

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.34  E-value=0.011  Score=51.63  Aligned_cols=69  Identities=13%  Similarity=0.170  Sum_probs=47.5

Q ss_pred             ccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHH
Q 029822           50 GIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALC  125 (187)
Q Consensus        50 g~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~  125 (187)
                      ...|....+..|..++++       +....+..+...+.++|..+++.+..++.+++||+..|.+.++..++..+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~  189 (393)
T PRK15011        121 TANPQMFALAREHADKTG-------REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVM  189 (393)
T ss_pred             hhHHHHHHHHHHHhhhcc-------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            444555566666544221       122233467888999999999999999999999999999888754444433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=96.29  E-value=0.014  Score=50.65  Aligned_cols=76  Identities=14%  Similarity=0.194  Sum_probs=56.6

Q ss_pred             HHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHH
Q 029822           39 LAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAI  118 (187)
Q Consensus        39 ~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~  118 (187)
                      .++.+.+++.++.-|...+...|+.++         +++......+..+.++|..+++.+..++-|+.||...|.+.+..
T Consensus       290 ~~~~l~g~~~~~~~p~~~~~~~~~~~~---------~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~  360 (381)
T PRK03633        290 PALFILGAAGFTLYPVAMAWACEKVEH---------HELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASV  360 (381)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHccCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            344555666666778887777776653         23345666667789999999999999999999999999988776


Q ss_pred             HHHHH
Q 029822          119 MLLSA  123 (187)
Q Consensus       119 ~~val  123 (187)
                      .+++.
T Consensus       361 ~l~~~  365 (381)
T PRK03633        361 SFIYL  365 (381)
T ss_pred             HHHHH
Confidence            65544

>TIGR00898 2A0119 cation transport protein

Probab=96.29  E-value=0.024  Score=50.89  Aligned_cols=81  Identities=19%  Similarity=0.130  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ...+++...+.++|.|+.-+....+..|.++++         +|.....++.++..+|.++++.+...+.+   |+..|.
T Consensus       180 ~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~---------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~  247 (505)
T TIGR00898       180 YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK---------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQL  247 (505)
T ss_pred             HHHHHHHHHHHHhhccchHHHHHHHhheecChh---------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHH
Confidence            456777778889999999999999999998752         34556667777888898888777655544   999999


Q ss_pred             hhHHHHHHHHHHH
Q 029822          114 IPAAIMLLSALCF  126 (187)
Q Consensus       114 i~~v~~~val~~f  126 (187)
                      +.++..++..+..
T Consensus       248 ~~~i~~~~~~~~~  260 (505)
T TIGR00898       248 AVSLPTFLFFLLS  260 (505)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887655554443

>TIGR00896 CynX cyanate transporter

Probab=96.28  E-value=0.011  Score=50.62  Aligned_cols=82  Identities=16%  Similarity=0.188  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc--Cccee
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL--GWKVG  111 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~--gw~~g  111 (187)
                      ...++++..+.++|.|...+.......|.+++          ++....+++..+.++|..+++.+..++.+..  +|+..
T Consensus        87 ~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~  156 (355)
T TIGR00896        87 TALLFAGTALIGVGIAIINVLLPSLIKRDFPQ----------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQA  156 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHhCcc----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            45566777788888888888877777776642          3466788888899999999988888887654  39999


Q ss_pred             hhhhHHHHHHHHHH
Q 029822          112 FGIPAAIMLLSALC  125 (187)
Q Consensus       112 F~i~~v~~~val~~  125 (187)
                      |.+.++..++.++.
T Consensus       157 f~~~~~~~~~~~~~  170 (355)
T TIGR00896       157 LAWWALPALLALLA  170 (355)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88776655444433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.25  E-value=0.01  Score=51.94  Aligned_cols=81  Identities=7%  Similarity=-0.019  Sum_probs=58.8

Q ss_pred             HHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhH
Q 029822           37 LYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPA  116 (187)
Q Consensus        37 ~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~  116 (187)
                      ..+.+.+.++|.+...+...++..+.+++         +.+.+.+.+++...++|..+++.+.+++-+.+|+...|.+.+
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~---------~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~  385 (417)
T PRK10489        315 AVLCLALFGYLSAISSLLQYTLLQTQTPD---------EMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASG  385 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCH---------HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHH
Confidence            34445555666665555555666666653         467888999999999999999999999999999998888777


Q ss_pred             HHHHHHHHHH
Q 029822          117 AIMLLSALCF  126 (187)
Q Consensus       117 v~~~val~~f  126 (187)
                      ++..+..++.
T Consensus       386 ~~~~~~~~~~  395 (417)
T PRK10489        386 FGLLIIGVLL  395 (417)
T ss_pred             HHHHHHHHHH
Confidence            6544443333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.18  E-value=0.014  Score=52.83  Aligned_cols=82  Identities=15%  Similarity=0.150  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee---------
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD---------  104 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~---------  104 (187)
                      ...++++..+.++|.|+.-+....+.++.+++         +.|....++++++.++|.+++..+..++..         
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~---------~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~  185 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATK---------KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAA  185 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            56788899999999999999999999999885         356777888888899988888766543311         


Q ss_pred             --------------ccCcceehhhhHHHHHHHHH
Q 029822          105 --------------NLGWKVGFGIPAAIMLLSAL  124 (187)
Q Consensus       105 --------------~~gw~~gF~i~~v~~~val~  124 (187)
                                    +.+||+.|.+.++..++.++
T Consensus       186 ~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       186 ADEASCTGSCVPAVDYMWRILIGFGAVPALLALY  219 (502)
T ss_pred             cccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence                          24899999887776555444

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01272 gluP glucose/galactose transporter

Probab=96.16  E-value=0.013  Score=50.29  Aligned_cols=83  Identities=10%  Similarity=-0.069  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee-------
Q 029822           32 SQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD-------  104 (187)
Q Consensus        32 ~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~-------  104 (187)
                      .+...+.+++.+++.|.+...+...+++++.-+++         +..+..|+.=.+..+|+++++++...+-.       
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~---------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~   78 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIE---------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLS   78 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc---------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchh
Confidence            46889999999999999999999999999997653         34556677777788899999888876542       


Q ss_pred             ---------ccCcceehhhhHHH-HHHHH
Q 029822          105 ---------NLGWKVGFGIPAAI-MLLSA  123 (187)
Q Consensus       105 ---------~~gw~~gF~i~~v~-~~val  123 (187)
                               ..+|+..|++-++. .++++
T Consensus        79 ~~~~~~~~~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        79 MQVATANAEAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                     14789999955544 44443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=96.10  E-value=0.026  Score=47.91  Aligned_cols=75  Identities=19%  Similarity=0.201  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee--------
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD--------  104 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~--------  104 (187)
                      +...++++..+.++|.+.+ +...++.+|.+++         ++|....+++..+.++|..++..+.+.+..        
T Consensus        90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~  159 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPK---------KIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGL  159 (366)
T ss_pred             hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCH---------hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence            4556677777788886655 4456788888864         245667777777777777777666555432        


Q ss_pred             --ccCcceeh-hhhHH
Q 029822          105 --NLGWKVGF-GIPAA  117 (187)
Q Consensus       105 --~~gw~~gF-~i~~v  117 (187)
                        ..+|++.| .+.++
T Consensus       160 ~~~~~w~~~~~~~~~~  175 (366)
T TIGR00886       160 PAHLAWGWAFVIVPAG  175 (366)
T ss_pred             cccccccchhHHHHHH
Confidence              35899999 44343

>PRK09952 shikimate transporter; Provisional

Probab=96.06  E-value=0.014  Score=52.04  Aligned_cols=78  Identities=19%  Similarity=0.291  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhe--------eccC
Q 029822           36 LLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQ--------DNLG  107 (187)
Q Consensus        36 ~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~--------~~~g  107 (187)
                      .+++...+.++|.|+.-|....+..+.++++         +|....+....+..+|.+++..+..++.        +.+|
T Consensus       127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~---------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~g  197 (438)
T PRK09952        127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKN---------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWG  197 (438)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHhCCCC---------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccC
Confidence            4667778899999999999999999887753         2344566677788888888866555543        3589


Q ss_pred             cceehhhhHHHHHHH
Q 029822          108 WKVGFGIPAAIMLLS  122 (187)
Q Consensus       108 w~~gF~i~~v~~~va  122 (187)
                      ||..|.+.++..+++
T Consensus       198 Wr~~f~~~~~~~l~~  212 (438)
T PRK09952        198 WRIPFLFSIVLVLIA  212 (438)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999887754443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=96.05  E-value=0.0049  Score=55.83  Aligned_cols=79  Identities=13%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             hhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhh--hhheeccCcceehhhhHH-HHHH
Q 029822           45 SLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLI--VYIQDNLGWKVGFGIPAA-IMLL  121 (187)
Q Consensus        45 avG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~--~~i~~~~gw~~gF~i~~v-~~~v  121 (187)
                      ++=.|.-.|...-..+.=|.+.         +|.+..+.+..+.|+|+.+.+.++  .++..+.+|+.+|.+|++ ++++
T Consensus       128 g~fQg~Gwpp~~~~i~~Wfsr~---------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiv  198 (448)
T COG2271         128 GWFQGMGWPPCARTITHWFSRK---------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIV  198 (448)
T ss_pred             HHHhcCCCcHHHHHHHHHcCcc---------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            3334444577777778888753         456778888899999999999998  999999999999999997 5777


Q ss_pred             HHHHHHhcCCc
Q 029822          122 SALCFFLASPF  132 (187)
Q Consensus       122 al~~f~~g~~~  132 (187)
                      +++.+..++.+
T Consensus       199 al~~~~~~rd~  209 (448)
T COG2271         199 ALILLFLLRDR  209 (448)
T ss_pred             HHHHHHHhCCC
Confidence            88888777654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=95.98  E-value=0.012  Score=51.18  Aligned_cols=81  Identities=17%  Similarity=0.072  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      .+.+++...+.+++.+...|...+...+. .+          ++...+.+..+..++|..+++.+..++-+++||+..|.
T Consensus        94 ~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~----------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~  162 (382)
T PRK11128         94 FWLLFVAIGLFNLFFSPLVPLTDALANTW-QK----------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILW  162 (382)
T ss_pred             HHHHHHHHHHHHHHHcccccHHHHHHHHH-Hh----------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence            45566666677888888888877776664 21          12334555666778999999999999999999999998


Q ss_pred             hhHHHHHHHHHH
Q 029822          114 IPAAIMLLSALC  125 (187)
Q Consensus       114 i~~v~~~val~~  125 (187)
                      +.++..++..+.
T Consensus       163 ~~~~~~~~~~~~  174 (382)
T PRK11128        163 ILTAGVASMLLG  174 (382)
T ss_pred             HHHHHHHHHHHH
Confidence            887765555443

>PRK03545 putative arabinose transporter; Provisional

Probab=95.96  E-value=0.028  Score=48.82  Aligned_cols=87  Identities=11%  Similarity=-0.108  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGI  114 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i  114 (187)
                      ..+++...+.++|.++.-+...+.+.+..+          +.+.+...++....++|..+|+.+.+++-++.|++..|.+
T Consensus       295 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~  364 (390)
T PRK03545        295 WHLSVLSIFWGIAIMCIGLAMQVKVLKLAP----------DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYV  364 (390)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHhCC----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHH
Confidence            344445555666776666666666555433          1345678888888899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCC
Q 029822          115 PAAIMLLSALCFFLASP  131 (187)
Q Consensus       115 ~~v~~~val~~f~~g~~  131 (187)
                      .++..+++++.++.-.+
T Consensus       365 ~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        365 GAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHHHHcc
Confidence            99888888877655443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=95.95  E-value=0.031  Score=49.09  Aligned_cols=77  Identities=25%  Similarity=0.307  Sum_probs=60.6

Q ss_pred             HHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHH
Q 029822           38 YLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAA  117 (187)
Q Consensus        38 ~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v  117 (187)
                      ++...+.++|.|.+.|...++..|.+++         +++.+...+.....++|..+|+.+.+++-+. .|+..|.+.++
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~---------~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~  161 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPG---------EKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCAL  161 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            3455678899999999999999999985         4678888888888999999999988888764 47777777665


Q ss_pred             HHHHHHH
Q 029822          118 IMLLSAL  124 (187)
Q Consensus       118 ~~~val~  124 (187)
                      ..+++.+
T Consensus       162 ~~~~~~~  168 (393)
T PRK11195        162 IYLLAAL  168 (393)
T ss_pred             HHHHHHH
Confidence            5444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=95.93  E-value=0.013  Score=50.88  Aligned_cols=83  Identities=16%  Similarity=0.086  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +.+.+++...+.+++.+..-|...++..+ +.          +++...+.+.....++|..+++.+..++-+.+||+..|
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~----------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f  161 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT-WQ----------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNIL  161 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH-HH----------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHH
Confidence            35566666666777777777777776533 32          23345678888899999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALCF  126 (187)
Q Consensus       113 ~i~~v~~~val~~f  126 (187)
                      .+..+...+.++.+
T Consensus       162 ~~~~~~~~~~~~~~  175 (382)
T TIGR00902       162 AILTAGLAFMLIGF  175 (382)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88766544443333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=95.90  E-value=0.024  Score=50.38  Aligned_cols=85  Identities=13%  Similarity=0.109  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhe---------
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQ---------  103 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~---------  103 (187)
                      ....++++..+.++|.|...+...++..+..++         +++.+..++.....++|+.+++.+.+.+-         
T Consensus        93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~  163 (410)
T TIGR00885        93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPE---------STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ  163 (410)
T ss_pred             cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence            456778888899999999999888888876543         23445567777778888888887776652         


Q ss_pred             -----------------eccCcceehhhhHHHHHHHHHHH
Q 029822          104 -----------------DNLGWKVGFGIPAAIMLLSALCF  126 (187)
Q Consensus       104 -----------------~~~gw~~gF~i~~v~~~val~~f  126 (187)
                                       +..+|+..|++.++..++..+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             12479999987776544443333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=95.89  E-value=0.026  Score=50.40  Aligned_cols=79  Identities=9%  Similarity=0.070  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhH-HHHhhhhhhheeccCcceeh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASS-MVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~-li~~~~~~~i~~~~gw~~gF  112 (187)
                      ...+++...+.+++.|..-|.......+.+++         +++....++++.+.++|. ++++.....+....||+..|
T Consensus       120 ~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f  190 (452)
T PRK11273        120 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ---------KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAAL  190 (452)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHhCCh---------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHH
Confidence            44566666778888888888888888888764         356778888888999886 44554333333345999999


Q ss_pred             hhhHHHHHH
Q 029822          113 GIPAAIMLL  121 (187)
Q Consensus       113 ~i~~v~~~v  121 (187)
                      .+.++..++
T Consensus       191 ~i~~~~~~~  199 (452)
T PRK11273        191 YMPAFAAIL  199 (452)
T ss_pred             HHHHHHHHH
Confidence            998765444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=95.80  E-value=0.044  Score=47.40  Aligned_cols=67  Identities=10%  Similarity=-0.008  Sum_probs=52.4

Q ss_pred             cccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHHH
Q 029822           51 IRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCF  126 (187)
Q Consensus        51 ~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~f  126 (187)
                      .-+....+..|.+.+         +.+......++++.++|.++++.+.+++.++.||...|.+.++..+++.++.
T Consensus       400 ~~~~~~~~~~~~~p~---------~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~  466 (481)
T TIGR00879       400 WGPVPWVIVSEIFPL---------SLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFV  466 (481)
T ss_pred             ccCeehhhhhccCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHH
Confidence            346666666777763         3566788888899999999999999999999999999998887766655543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=95.73  E-value=0.037  Score=54.61  Aligned_cols=63  Identities=10%  Similarity=0.067  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheec
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDN  105 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~  105 (187)
                      ...+++...+.+++.|..-|...++++|.+.++         ++...++++..+.++|.++++.+.+++.+.
T Consensus       103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE---------NLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc---------cchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            566777778889999999999999999998752         456788999999999999999988888665

>PRK15075 citrate-proton symporter; Provisional

Probab=95.69  E-value=0.028  Score=49.76  Aligned_cols=74  Identities=24%  Similarity=0.290  Sum_probs=51.8

Q ss_pred             HHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhh--------eeccC
Q 029822           36 LLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYI--------QDNLG  107 (187)
Q Consensus        36 ~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i--------~~~~g  107 (187)
                      .+.++..+.++|.|+.-++...+.+|.++++         +|.....++....++|..++..+...+        .+++|
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~---------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~g  189 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPG---------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWG  189 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCcc---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence            4577788899999999999999999998753         345566666555555555544443333        35789


Q ss_pred             cceehhhhHHH
Q 029822          108 WKVGFGIPAAI  118 (187)
Q Consensus       108 w~~gF~i~~v~  118 (187)
                      |+..|.+.++.
T Consensus       190 Wr~~f~~~~~~  200 (434)
T PRK15075        190 WRIPFLIGCLI  200 (434)
T ss_pred             hHHHHHHHHHH
Confidence            99999986543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.62  E-value=0.061  Score=47.03  Aligned_cols=84  Identities=12%  Similarity=0.147  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhe-------eccC
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQ-------DNLG  107 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~-------~~~g  107 (187)
                      ..+++...+..++.+.......++.++..++  +      ++|.+...|-.++.++|.+++..+.+.+.       +..|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~------~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g  171 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLD--P------RERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG  171 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCC--H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence            3344444455666666666666777766542  2      34566777777788888777655433332       3568


Q ss_pred             cceehhhhHHHHHHHHHHH
Q 029822          108 WKVGFGIPAAIMLLSALCF  126 (187)
Q Consensus       108 w~~gF~i~~v~~~val~~f  126 (187)
                      |+..|.+.++..++..++.
T Consensus       172 ~~~~~~i~~~l~~~~~~~~  190 (437)
T TIGR00792       172 WFMFALVLALIGVVSLIIC  190 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9988888877655554443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=95.53  E-value=0.026  Score=51.25  Aligned_cols=93  Identities=15%  Similarity=0.220  Sum_probs=74.5

Q ss_pred             hhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCccee
Q 029822           32 SQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVG  111 (187)
Q Consensus        32 ~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~g  111 (187)
                      .+.+.+.+...++++|+...-|...++..++-++         +.+..+...++.+..+|..++..+.....+..+|..-
T Consensus       379 ~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~---------~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~  449 (475)
T TIGR00924       379 TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ---------RLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGV  449 (475)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Confidence            4566777888889999999999999998887553         4678899999999999999998887777777788888


Q ss_pred             hhhhHHHHHHHHHHHHhcCCce
Q 029822          112 FGIPAAIMLLSALCFFLASPFY  133 (187)
Q Consensus       112 F~i~~v~~~val~~f~~g~~~y  133 (187)
                      |...++.+++..++++...+..
T Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~  471 (475)
T TIGR00924       450 FGKIGLVTLLVGVVMALMVPWL  471 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887777666666555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=95.52  E-value=0.034  Score=48.66  Aligned_cols=78  Identities=10%  Similarity=0.038  Sum_probs=60.3

Q ss_pred             HHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC-cceehhhhHHHHHH
Q 029822           43 LMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG-WKVGFGIPAAIMLL  121 (187)
Q Consensus        43 liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g-w~~gF~i~~v~~~v  121 (187)
                      +.++|.|+.-|+......+++.+.        +.+...+++.+...++++.+++.+..++.|+.| |..+|.+.+++.++
T Consensus       301 l~g~g~g~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~  372 (393)
T PRK09705        301 VCGLGLGGAFPLCLLLALDHSVQP--------AIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVG  372 (393)
T ss_pred             HHHHhccchHHHHHHHHHhhcCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            456777888787776777776532        356778899999999999999999999999875 88999998887766


Q ss_pred             HHHHHHh
Q 029822          122 SALCFFL  128 (187)
Q Consensus       122 al~~f~~  128 (187)
                      .++..+.
T Consensus       373 ~~~~~~~  379 (393)
T PRK09705        373 LMIITLR  379 (393)
T ss_pred             HHHHHHH
Confidence            6655433

>TIGR00897 2A0118 polyol permease family

Probab=95.49  E-value=0.1  Score=45.60  Aligned_cols=74  Identities=18%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhH-HHHhhhhhhheeccCcceeh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASS-MVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~-li~~~~~~~i~~~~gw~~gF  112 (187)
                      ...+++...+.++|.+..-+...+...+.+++         +++.....++..+.++|. .+++.+..++.+..||...+
T Consensus       105 ~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~---------~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~  175 (402)
T TIGR00897       105 YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ---------DNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTL  175 (402)
T ss_pred             HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence            34455556666778777666666666676653         356778888889999996 57888778888888865554


Q ss_pred             hhhH
Q 029822          113 GIPA  116 (187)
Q Consensus       113 ~i~~  116 (187)
                      ....
T Consensus       176 ~~~~  179 (402)
T TIGR00897       176 WSAL  179 (402)
T ss_pred             HHHH
Confidence            4443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=95.40  E-value=0.03  Score=54.16  Aligned_cols=85  Identities=16%  Similarity=0.144  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee--------
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD--------  104 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~--------  104 (187)
                      ....++++..+.++|.|+.-|....+.++.+..         +.|...+.++.++..+|.+++..+..++-.        
T Consensus       254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~---------~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~  324 (742)
T TIGR01299       254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ---------EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQM  324 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcc
Confidence            356777888899999999999999999998874         356667778777788888877665433322        


Q ss_pred             -----ccCcceehhhhHHHHHHHHHHH
Q 029822          105 -----NLGWKVGFGIPAAIMLLSALCF  126 (187)
Q Consensus       105 -----~~gw~~gF~i~~v~~~val~~f  126 (187)
                           ..+|++.|++.++..+++++.+
T Consensus       325 g~~~~~~gWR~l~~i~~lp~ll~ll~~  351 (742)
T TIGR01299       325 GSAYQFHSWRVFVIVCAFPCVFAIGAL  351 (742)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHH
Confidence                 2368888888777665555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.24  E-value=0.018  Score=50.64  Aligned_cols=81  Identities=12%  Similarity=0.099  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHH-HHHHhhHhHHHHhhhhhhheeccCcceehhh
Q 029822           36 LLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSW-YYVSVSASSMVAVTLIVYIQDNLGWKVGFGI  114 (187)
Q Consensus        36 ~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~-~Y~~invG~li~~~~~~~i~~~~gw~~gF~i  114 (187)
                      .+++...+.+++.+...+....++.+.++++         .+...+.. +.++.++|..+++.+..++-|..||+..|.+
T Consensus       317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---------~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~  387 (420)
T PRK09528        317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVR---------LSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI  387 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc---------ceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence            3444455556666666666666667776532         22333334 4567889999999999999999999999998


Q ss_pred             hHHHHHHHHHH
Q 029822          115 PAAIMLLSALC  125 (187)
Q Consensus       115 ~~v~~~val~~  125 (187)
                      .++..++..++
T Consensus       388 ~~~~~~i~~~~  398 (420)
T PRK09528        388 LGGIVLLFTLI  398 (420)
T ss_pred             HHHHHHHHHHH
Confidence            77766554444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=95.22  E-value=0.094  Score=45.41  Aligned_cols=72  Identities=7%  Similarity=-0.091  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|...|...+...+.+.+         +++.+.++++..+.++|..+++.+..++.+...|...+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  163 (381)
T PRK03633         93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS---------RNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW  163 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence            356677778888899988888776666666553         35677889999999999999999999887764443333


Q ss_pred             h
Q 029822          113 G  113 (187)
Q Consensus       113 ~  113 (187)
                      .
T Consensus       164 ~  164 (381)
T PRK03633        164 V  164 (381)
T ss_pred             H
Confidence            3

>PRK10133 L-fucose transporter; Provisional

Probab=95.11  E-value=0.094  Score=46.97  Aligned_cols=60  Identities=12%  Similarity=0.068  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVY  101 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~  101 (187)
                      +...+++++.+.++|.|...+...++++|..+++         ++....+.+-....+|..+++.+.+.
T Consensus       116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~---------~~~~~~s~~~~~~~~G~~~g~~~g~~  175 (438)
T PRK10133        116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES---------SGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh---------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888999999999999999999998754321         22223455555566777777665544

>PRK15011 sugar efflux transporter B; Provisional

Probab=95.05  E-value=0.039  Score=48.16  Aligned_cols=52  Identities=12%  Similarity=0.209  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHHHHh
Q 029822           77 LKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFL  128 (187)
Q Consensus        77 ~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~f~~  128 (187)
                      +.....++....++|..+++.+.+++.+..||+..|.+..+..+++++..+.
T Consensus       338 ~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        338 AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            3456677777789999999999999999999999999988887777766543

>PRK03699 putative transporter; Provisional

Probab=94.77  E-value=0.027  Score=49.13  Aligned_cols=77  Identities=9%  Similarity=0.155  Sum_probs=55.9

Q ss_pred             HHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHH
Q 029822           38 YLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAA  117 (187)
Q Consensus        38 ~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v  117 (187)
                      .+...+.+++.++.-+...+.+.++.++..          ....++.+.+.++|+.+++.+.+++-+..||...|.+.++
T Consensus       298 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~  367 (394)
T PRK03699        298 LYAILGLGFFSSAIYTTIITLGSQQTKVAS----------PKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANG  367 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCC----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHH
Confidence            334455666666666777777777665322          2235677778899999999999999999999999988777


Q ss_pred             HHHHHHH
Q 029822          118 IMLLSAL  124 (187)
Q Consensus       118 ~~~val~  124 (187)
                      ...++++
T Consensus       368 ~~~~~~~  374 (394)
T PRK03699        368 LYAVVFV  374 (394)
T ss_pred             HHHHHHH
Confidence            6666544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=94.70  E-value=0.082  Score=46.18  Aligned_cols=72  Identities=17%  Similarity=0.116  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCC-cccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcc
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDG-IKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWK  109 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~-~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~  109 (187)
                      ..+++...+.++|.|..-+...++.+|..|.++- ..+   +....++..+.++.++|..++..+.+++-+..||.
T Consensus       312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       312 PLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGV---RAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4455566677788888888899999998765431 111   35677888898999999999999999988877774

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.61  E-value=0.096  Score=48.41  Aligned_cols=84  Identities=19%  Similarity=0.153  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhe------eccC
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQ------DNLG  107 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~------~~~g  107 (187)
                      .+.+.+-..++++=+++.-|+.....+.-|+++         ++...+.+||-+.++|+.+|.++...++      ...|
T Consensus       134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~---------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g  204 (495)
T KOG2533|consen  134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKS---------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG  204 (495)
T ss_pred             hHHHHHHHHHHHHHhcccchHHHHHHHhhcChh---------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence            344555567788899999999999999999974         3566778899999999999988777753      3479


Q ss_pred             cceehhhhHHHHHH-HHHHH
Q 029822          108 WKVGFGIPAAIMLL-SALCF  126 (187)
Q Consensus       108 w~~gF~i~~v~~~v-al~~f  126 (187)
                      |++.|++.++.+++ ++++|
T Consensus       205 W~~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  205 WRWLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             ceeehhHHHHHHHHHHheEE
Confidence            99999999986544 44443

>PRK11663 regulatory protein UhpC; Provisional

Probab=94.57  E-value=0.07  Score=47.32  Aligned_cols=52  Identities=12%  Similarity=0.031  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHHH
Q 029822           75 SALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCF  126 (187)
Q Consensus        75 ~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~f  126 (187)
                      +.+.....+.++..++|..+++.+.+++.+..||...|.+.+++.+++.++.
T Consensus       369 ~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        369 EAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLL  420 (434)
T ss_pred             hhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            4567788888999999999999999999999999999999888766655443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=94.42  E-value=0.05  Score=48.55  Aligned_cols=51  Identities=20%  Similarity=0.240  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHhhHhHHH-HhhhhhhheeccCcceehhhhHHHHHHHHHH
Q 029822           75 SALKSYFSWYYVSVSASSMV-AVTLIVYIQDNLGWKVGFGIPAAIMLLSALC  125 (187)
Q Consensus        75 ~~~~~~F~~~Y~~invG~li-~~~~~~~i~~~~gw~~gF~i~~v~~~val~~  125 (187)
                      +.+.+.+.++.+..++|+.+ ++.+.+++.|..||+.+|.+..+..+++++.
T Consensus       379 ~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~  430 (452)
T PRK11273        379 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  430 (452)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            35677888888888998654 7889999999999999999888766665543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=94.41  E-value=0.11  Score=48.34  Aligned_cols=91  Identities=20%  Similarity=0.161  Sum_probs=74.2

Q ss_pred             hhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCccee
Q 029822           32 SQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVG  111 (187)
Q Consensus        32 ~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~g  111 (187)
                      .+.+.+++...++++|.+...|.-.+.+.+..+++         ++...-++.-...|+.-++|+.+.+.+-...|-...
T Consensus       101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~---------~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~  171 (524)
T PF05977_consen  101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE---------DLPAANALNSISFNIARIIGPALGGILVAFFGAAAA  171 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh---------hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            45677777778899999999999999999998853         456677888888999999999998888888898999


Q ss_pred             hhhhHHHHHHHHHHHHhcCC
Q 029822          112 FGIPAAIMLLSALCFFLASP  131 (187)
Q Consensus       112 F~i~~v~~~val~~f~~g~~  131 (187)
                      |++-+++.+++++.+..-++
T Consensus       172 f~inalsfl~~i~~l~~~~~  191 (524)
T PF05977_consen  172 FLINALSFLISILALLRWKP  191 (524)
T ss_pred             HHHHHHHHHHHHHHHHHccc
Confidence            99999988777665544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=94.38  E-value=0.075  Score=51.42  Aligned_cols=72  Identities=7%  Similarity=-0.045  Sum_probs=53.6

Q ss_pred             hhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHH
Q 029822           45 SLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSAL  124 (187)
Q Consensus        45 avG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~  124 (187)
                      ++..++..+.+.++.++.|..         +.|...+.|.+...++|+++++.+.+++.+. +....|.+.+++++++.+
T Consensus       659 g~~~~~~~~~~~a~~aEl~Pt---------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~l  728 (742)
T TIGR01299       659 GGLSIAAWNALDVLTVELYPS---------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGL  728 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            344445556677778888874         4678999999999999999999998877653 456678888777666555


Q ss_pred             HH
Q 029822          125 CF  126 (187)
Q Consensus       125 ~f  126 (187)
                      +.
T Consensus       729 l~  730 (742)
T TIGR01299       729 LA  730 (742)
T ss_pred             HH
Confidence            43

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=94.35  E-value=0.24  Score=42.93  Aligned_cols=51  Identities=16%  Similarity=0.124  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHHHH
Q 029822           77 LKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFF  127 (187)
Q Consensus        77 ~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~f~  127 (187)
                      +..+-.++.++..+|.+++..+..++.+++||+..|.+.++..++..+..+
T Consensus       131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~  181 (390)
T TIGR02718       131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVL  181 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            344455556677999999998888999999999999999987766555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09669 putative symporter YagG; Provisional

Probab=94.29  E-value=0.09  Score=46.72  Aligned_cols=73  Identities=7%  Similarity=0.018  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCC-cccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcc
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDG-IKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWK  109 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~-~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~  109 (187)
                      ...+++...+.++|.|+..+...++.+|..|.++. .++   ++...+|+.+.++.++|..+++.+..++-+..||.
T Consensus       319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~---r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGR---RLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            45567777788999999999999999999875442 122   34566788889999999999998888887766664

>PRK03893 putative sialic acid transporter; Provisional

Probab=94.29  E-value=0.11  Score=46.37  Aligned_cols=59  Identities=8%  Similarity=0.008  Sum_probs=45.5

Q ss_pred             ccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHH
Q 029822           52 RSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIM  119 (187)
Q Consensus        52 kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~  119 (187)
                      .+...++..+.+++         +++.+.+.+++...++|+.+++.+.+++.++.||+..|.+.++++
T Consensus       384 ~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        384 SGLLPKLIGGYFDT---------EQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             chhhHHHHHhhCCH---------HHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            34555566666653         457888999999999999999999999999999988876555443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=94.16  E-value=0.097  Score=47.30  Aligned_cols=80  Identities=9%  Similarity=0.046  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhe----e-----
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQ----D-----  104 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~----~-----  104 (187)
                      ...+++...+.++|.++.-+ .....++.|++         ++|......++...|+|+.++..+.+.+.    +     
T Consensus       124 ~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~---------~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~  193 (476)
T PLN00028        124 ATGFIAVRFFIGFSLATFVS-CQYWMSTMFNG---------KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPS  193 (476)
T ss_pred             HHHHHHHHHHHHHHHHhhHH-HHHHHHHhcCh---------hheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            34556666677787776543 34456777764         24556667777777778777766555442    2     


Q ss_pred             ccCcceehhhhHHHHHHHH
Q 029822          105 NLGWKVGFGIPAAIMLLSA  123 (187)
Q Consensus       105 ~~gw~~gF~i~~v~~~val  123 (187)
                      ..||+..|.+.++..++..
T Consensus       194 ~~gWr~~f~i~g~l~l~~~  212 (476)
T PLN00028        194 FTAWRIAFFVPGLLHIIMG  212 (476)
T ss_pred             hhhhHHHHHHHHHHHHHHH
Confidence            2589999999887654433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=94.06  E-value=0.033  Score=49.87  Aligned_cols=87  Identities=10%  Similarity=0.057  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc---Ccc
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL---GWK  109 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~---gw~  109 (187)
                      +...+++...+.++|.|..-|......++-|+++         +|...+.++-.+.++|..++..+..++.+..   +|+
T Consensus       121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~  191 (467)
T PRK09556        121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR---------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVI  191 (467)
T ss_pred             hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc---------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcch
Confidence            4566677777888999998899999999999863         3455678888889999999988877765543   688


Q ss_pred             eehhhhHHHH-HHHHHHHHh
Q 029822          110 VGFGIPAAIM-LLSALCFFL  128 (187)
Q Consensus       110 ~gF~i~~v~~-~val~~f~~  128 (187)
                      ..|.+.++.. .++++.++.
T Consensus       192 ~~f~~~g~~~~~~~i~~~~~  211 (467)
T PRK09556        192 GMFIFPSIIALIIGFIGLRY  211 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHh
Confidence            8888866543 344444444

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.02  E-value=0.43  Score=46.15  Aligned_cols=93  Identities=19%  Similarity=0.305  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee--------
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD--------  104 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~--------  104 (187)
                      -..+|++|+.+.++|.-.+.+    +|--..|+...+     +....++...|..--+|-.+|.++.++.-.        
T Consensus       236 ~~llff~~q~l~GIG~Tpi~t----lGisYiDDnvk~-----~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~  306 (735)
T KOG3626|consen  236 PFLLFFLGQLLLGIGATPIFT----LGISYIDDNVKK-----KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLS  306 (735)
T ss_pred             hHHHHHHHHHHhhcCCCCCcc----CCCccccccccc-----cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccC
Confidence            456889999999999866554    444444544322     345668888888888888888777766421        


Q ss_pred             c-----------cCcceehhhhHHHHHHHHHHHHhcCCcee
Q 029822          105 N-----------LGWKVGFGIPAAIMLLSALCFFLASPFYV  134 (187)
Q Consensus       105 ~-----------~gw~~gF~i~~v~~~val~~f~~g~~~y~  134 (187)
                      .           -.||+||++++..++++.+.|+.--+.+.
T Consensus       307 ~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  307 PIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence            1           24999999999998888777766554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=94.00  E-value=0.072  Score=45.43  Aligned_cols=73  Identities=11%  Similarity=0.044  Sum_probs=52.6

Q ss_pred             HHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC-cceehhh
Q 029822           36 LLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG-WKVGFGI  114 (187)
Q Consensus        36 ~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g-w~~gF~i  114 (187)
                      .+.+++.+.++..++.-+...++..|.+++         +.+.+.+.+++...++|..+++.+.+++.++.| |..+|..
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       330 VLGLGLFFQQMLVQGIWGILPKHLGEYFPT---------DQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHhhhCCc---------chhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            333444444455555566667777777653         356778889999999999999999999999988 8777665


Q ss_pred             hHH
Q 029822          115 PAA  117 (187)
Q Consensus       115 ~~v  117 (187)
                      ..+
T Consensus       401 ~~~  403 (405)
T TIGR00891       401 LSF  403 (405)
T ss_pred             hcc
Confidence            443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=93.78  E-value=0.5  Score=41.84  Aligned_cols=66  Identities=8%  Similarity=0.002  Sum_probs=46.0

Q ss_pred             cccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhh------hheeccCcceehhhhHHHHHHHHH
Q 029822           51 IRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIV------YIQDNLGWKVGFGIPAAIMLLSAL  124 (187)
Q Consensus        51 ~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~------~i~~~~gw~~gF~i~~v~~~val~  124 (187)
                      .-|+......+.|..         +.|.....+.+...++|..++..+.+      ++.++++|+..|.+-++..+++.+
T Consensus       381 ~~~~~~~~~~e~~p~---------~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (479)
T PRK10077        381 WGPVCWVLLSEIFPN---------AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL  451 (479)
T ss_pred             ccchhHHHhHhhCCh---------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHH
Confidence            346777777887753         45778888888888888887755555      445678999888887665444444


Q ss_pred             H
Q 029822          125 C  125 (187)
Q Consensus       125 ~  125 (187)
                      .
T Consensus       452 ~  452 (479)
T PRK10077        452 F  452 (479)
T ss_pred             H
Confidence            3

>PRK10054 putative transporter; Provisional

Probab=93.70  E-value=0.12  Score=45.32  Aligned_cols=92  Identities=13%  Similarity=-0.020  Sum_probs=58.5

Q ss_pred             HHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhH
Q 029822           37 LYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPA  116 (187)
Q Consensus        37 ~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~  116 (187)
                      +.++..+.++|.+..-|+..++..+.-+++         .+..+|+.+ ...++|..+++.+.+++.|..|....|.+-+
T Consensus       301 ~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~---------~~~~~~~~~-~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~  370 (395)
T PRK10054        301 WGMSAAVFTVGEIIYAPGEYMLIDHIAPPG---------MKASYFSAQ-SLGWLGAAINPLVSGVILTTLPPWSLFVILA  370 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCCcc---------cceehHhHH-HHHHHHHHHHHHHHHHHHHHcChhhHHHHHH
Confidence            344555666677666676666666654421         234455543 3566899999999999999999999998866


Q ss_pred             HHHHHHHHHHHhcCCceeecCCCCCh
Q 029822          117 AIMLLSALCFFLASPFYVKSKANTSL  142 (187)
Q Consensus       117 v~~~val~~f~~g~~~y~~~~p~gs~  142 (187)
                      +.+.++.+.-+   ++- +.+|.|.|
T Consensus       371 ~~~~~~~~~~~---~~~-~~~~~~~~  392 (395)
T PRK10054        371 LAIVAAWLLML---KGM-RARPWGQP  392 (395)
T ss_pred             HHHHHHHHHHH---hcc-ccCcccCC
Confidence            65555444333   222 23577765

>PRK09669 putative symporter YagG; Provisional

Probab=93.65  E-value=0.33  Score=43.10  Aligned_cols=84  Identities=12%  Similarity=0.196  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhh----he---ecc
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVY----IQ---DNL  106 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~----i~---~~~  106 (187)
                      ...+++...+..++...+...-.+++++..++.        ++|.+..+|.....++|..++..+...    +.   ...
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~--------~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~  180 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDP--------RERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQK  180 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            334444444445444456666677888876533        345677788888888888877654322    22   135


Q ss_pred             CcceehhhhHHHHHHHHHH
Q 029822          107 GWKVGFGIPAAIMLLSALC  125 (187)
Q Consensus       107 gw~~gF~i~~v~~~val~~  125 (187)
                      ||+..+.+.++..++..++
T Consensus       181 g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        181 GYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            7777777666655444433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=93.63  E-value=0.18  Score=43.60  Aligned_cols=80  Identities=16%  Similarity=-0.060  Sum_probs=55.9

Q ss_pred             HHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc-Ccceehhhh
Q 029822           37 LYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL-GWKVGFGIP  115 (187)
Q Consensus        37 ~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~-gw~~gF~i~  115 (187)
                      +++...+.+++.++..+...++..+.+++         +.+.+...+++...++|..+++.+.+++-++. +|...|.+.
T Consensus       311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~---------~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~  381 (406)
T PRK11551        311 MLLAGFAAGLFVVGGQSVLYALAPLFYPT---------QVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGAS  381 (406)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHcch---------hhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHH
Confidence            34444555666666677777888887764         34677888999999999999999999987764 455556666


Q ss_pred             HHHHHHHHHH
Q 029822          116 AAIMLLSALC  125 (187)
Q Consensus       116 ~v~~~val~~  125 (187)
                      ....+++.+.
T Consensus       382 ~~~~~~~~~~  391 (406)
T PRK11551        382 IPVILVAALA  391 (406)
T ss_pred             HHHHHHHHHH
Confidence            5555554444

>TIGR00897 2A0118 polyol permease family

Probab=92.99  E-value=0.25  Score=43.19  Aligned_cols=79  Identities=16%  Similarity=0.015  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhh
Q 029822           36 LLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIP  115 (187)
Q Consensus        36 ~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~  115 (187)
                      .+++...+.+++.++.-+. .+...+. .   +      +++...+.+++.+.++|..+++.+..++-+..||...|.+.
T Consensus       318 ~~~~~~~~~G~~~~~~~~~-~~~~~~~-~---~------~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~  386 (402)
T TIGR00897       318 VALIIAIALGIFLAGYVPL-AAVFPTL-A---P------KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIF  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHhh-C---c------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            3344444555665555332 3333332 2   2      34678889999999999999999999999989999999988


Q ss_pred             HHHHHHHHHH
Q 029822          116 AAIMLLSALC  125 (187)
Q Consensus       116 ~v~~~val~~  125 (187)
                      +++.+++.++
T Consensus       387 a~~~~i~~~~  396 (402)
T TIGR00897       387 AALYVVSAFL  396 (402)
T ss_pred             HHHHHHHHHH
Confidence            8776665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=92.88  E-value=0.29  Score=44.93  Aligned_cols=86  Identities=24%  Similarity=0.347  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC-cceeh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG-WKVGF  112 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g-w~~gF  112 (187)
                      .+-||+-=.++++..|+..+..-++.++.-.++         +...||..|.+..-..+++++++.+.+.+..| -|.||
T Consensus       380 ~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g---------~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~  450 (477)
T PF11700_consen  380 PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG---------REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGF  450 (477)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence            344666666788999999999999999887753         34779999999999999999999999988775 88999


Q ss_pred             hhhHHHHHHHHHHHHh
Q 029822          113 GIPAAIMLLSALCFFL  128 (187)
Q Consensus       113 ~i~~v~~~val~~f~~  128 (187)
                      +.-.+.+++++++++.
T Consensus       451 ~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  451 LFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9888888888877643

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11010 ampG muropeptide transporter; Validated

Probab=92.67  E-value=0.27  Score=44.71  Aligned_cols=68  Identities=10%  Similarity=0.116  Sum_probs=49.6

Q ss_pred             cchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHHHHhc
Q 029822           53 SSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLA  129 (187)
Q Consensus        53 p~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~f~~g  129 (187)
                      +...++..+..++.-         ....+.+++...++|..++..+.+++.|..||...|.+.+++.+++++....-
T Consensus       335 ~~~~a~~~~l~~~~~---------~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        335 AAFVALLMTLCNKSF---------SATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHcCCCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555332         23456777788899998888889999999999999999998887877765443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=92.48  E-value=0.42  Score=41.93  Aligned_cols=78  Identities=13%  Similarity=0.068  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGI  114 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i  114 (187)
                      +.++++..+.++|.+...+....+..+..++.          ..+..+.++...++|..+|+.+.+++-|.+|+...|..
T Consensus       306 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~  375 (394)
T PRK10213        306 IVATGVAIIWGLTFALVPVGWSTWITRSLADQ----------AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLML  375 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHH
Confidence            44555666677788888887777777665421          22344566667788988999999999999999888888


Q ss_pred             hHHHHHHH
Q 029822          115 PAAIMLLS  122 (187)
Q Consensus       115 ~~v~~~va  122 (187)
                      +++...+.
T Consensus       376 ~~~~~~~~  383 (394)
T PRK10213        376 SGTLMLLT  383 (394)
T ss_pred             HHHHHHHH
Confidence            77654433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=92.38  E-value=0.21  Score=41.93  Aligned_cols=56  Identities=18%  Similarity=0.165  Sum_probs=42.3

Q ss_pred             ccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           48 GGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        48 ~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      .++.-+.......+.+++         +.+...+.++....++|..+++.+.+++.+++||+..|
T Consensus       324 ~~~~~~~~~~~~~~~~~~---------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       324 VYGPQMLIGVIASELAPK---------KAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HhhhhHHHHHHHHHhcCc---------chhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            333334444555666553         35677889999999999999999999999999998775

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=92.21  E-value=0.23  Score=46.77  Aligned_cols=104  Identities=21%  Similarity=0.222  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFG  113 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~  113 (187)
                      ..+.|+...+..-+ ++.++|+..+.+++|......     .-+.-+|...|+.|++++++..+.            .|+
T Consensus        59 nlv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~g-----~~laD~f~gry~tI~~~s~i~~~G------------~~~  120 (571)
T KOG1237|consen   59 NLVTYLTLELHASG-GGAANNVNAFGGTQFLLPLLG-----AFLADSFLGRYFTINIGSLISLLG------------LFG  120 (571)
T ss_pred             HHHHHHHHHhccch-HHHHHHHHHHhhHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHH------------HHH
Confidence            34455555555555 899999999999999864321     467888999999999999988776            566


Q ss_pred             hhHHHHHHHHHHHHhcCCceee-cCCCCChhHHHHHHHHHHHHhcC
Q 029822          114 IPAAIMLLSALCFFLASPFYVK-SKANTSLLSGLIQVLVASYKNRH  158 (187)
Q Consensus       114 i~~v~~~val~~f~~g~~~y~~-~~p~gs~l~~~~~v~~~a~~~~~  158 (187)
                      ++...++.++..+-+   .+.. ....+++-+.+..++..++....
T Consensus       121 lt~~a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia  163 (571)
T KOG1237|consen  121 LTLSAMIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIA  163 (571)
T ss_pred             HHHHHHhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHhe
Confidence            666666666654443   1111 12344566667777777776543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=92.18  E-value=0.49  Score=43.38  Aligned_cols=86  Identities=9%  Similarity=-0.039  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhe-----e---
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQ-----D---  104 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~-----~---  104 (187)
                      +...+++.-.++++| |+.-+.....+.+.|++         +++.....++-...|+|..++..+.+.+-     .   
T Consensus       127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~---------~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G  196 (462)
T PRK15034        127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPK---------AKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLG  196 (462)
T ss_pred             CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH---------hHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            456777777788887 55667788888899985         34566677776667777766655554422     1   


Q ss_pred             ----------ccCcceehhhhHHHHHHHHHHHHh
Q 029822          105 ----------NLGWKVGFGIPAAIMLLSALCFFL  128 (187)
Q Consensus       105 ----------~~gw~~gF~i~~v~~~val~~f~~  128 (187)
                                ..+|+.++.+-.+..+++.+.+++
T Consensus       197 ~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        197 VNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             cccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      234555555555555455544444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=91.92  E-value=0.044  Score=51.02  Aligned_cols=92  Identities=15%  Similarity=0.257  Sum_probs=2.7

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee--------
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD--------  104 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~--------  104 (187)
                      -..+|++|.++.++|...+-+--.+    ..||.-++     ++-.-+...+|..-.+|..+|.++.++.-.        
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~tLG~t----YiDDnv~~-----~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~  210 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYTLGIT----YIDDNVSK-----KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKV  210 (539)
T ss_dssp             ------------SSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCccceee----eecccccc-----ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccc
Confidence            3577888999999998776654444    44443321     344567788888888888888766654321        


Q ss_pred             c-------------c-CcceehhhhHHHHHHHHHHHHhcCCce
Q 029822          105 N-------------L-GWKVGFGIPAAIMLLSALCFFLASPFY  133 (187)
Q Consensus       105 ~-------------~-gw~~gF~i~~v~~~val~~f~~g~~~y  133 (187)
                      .             + .||+||++.++..++..+.++.-.+..
T Consensus       211 ~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l  253 (539)
T PF03137_consen  211 PPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL  253 (539)
T ss_dssp             -------------------------------------------
T ss_pred             cccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence            0             2 399999999988777666655544443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK09952 shikimate transporter; Provisional

Probab=91.78  E-value=0.52  Score=41.92  Aligned_cols=81  Identities=14%  Similarity=0.009  Sum_probs=55.3

Q ss_pred             HHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHH-hhHhHHHHhhhhhhheecc--Ccceehhhh
Q 029822           39 LAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVS-VSASSMVAVTLIVYIQDNL--GWKVGFGIP  115 (187)
Q Consensus        39 ~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~-invG~li~~~~~~~i~~~~--gw~~gF~i~  115 (187)
                      +.+.+.+++.|...+...++.+|.|+.         +.|.+...+-|.. ..+|+.+++.+..++.+..  +|...|...
T Consensus       348 ~~~~l~~~~~~~~~~~~~~~~~e~~p~---------~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~  418 (438)
T PRK09952        348 FSIMLANIAHDMVVCVQQPMFTEMFGA---------SYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYL  418 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCc---------chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            344445667777777778888898875         2455566665554 4588888999998887643  577778777


Q ss_pred             HHHHHHHHHHHHh
Q 029822          116 AAIMLLSALCFFL  128 (187)
Q Consensus       116 ~v~~~val~~f~~  128 (187)
                      +++.+++.+..+.
T Consensus       419 ~~~~~i~~v~~~~  431 (438)
T PRK09952        419 LAGCLISAMTALL  431 (438)
T ss_pred             HHHHHHHHHHHHH
Confidence            7776666655443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=91.78  E-value=0.53  Score=42.11  Aligned_cols=53  Identities=13%  Similarity=-0.024  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHhhH-hHHHHhhhhhhhee------------ccCcceehhhhHHHHHHHHHHHH
Q 029822           75 SALKSYFSWYYVSVSA-SSMVAVTLIVYIQD------------NLGWKVGFGIPAAIMLLSALCFF  127 (187)
Q Consensus        75 ~~~~~~F~~~Y~~inv-G~li~~~~~~~i~~------------~~gw~~gF~i~~v~~~val~~f~  127 (187)
                      +.+...........++ |..+++.+++++.|            ..||..+|.+..++++++++.++
T Consensus       381 ~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        381 KAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             hhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            3566777778788886 77889999999988            67899999998888888766544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=91.63  E-value=0.67  Score=43.94  Aligned_cols=83  Identities=10%  Similarity=0.045  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      ....+..|..+.++|.|... ......+|....         |.|...+.+..+..-+...+++.+.-.+-.+.+||+.|
T Consensus       130 ~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~---------k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~  199 (599)
T PF06609_consen  130 NMNTFIAGMVLYGVGAGVQE-LAALAISELVPN---------KWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIF  199 (599)
T ss_pred             cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhccc---------chhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHH
Confidence            44567788889899987765 345556777642         12222222222211111112223322333456999999


Q ss_pred             hhhHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALC  125 (187)
Q Consensus       113 ~i~~v~~~val~~  125 (187)
                      .+..+...++++.
T Consensus       200 ~~~~i~~~i~~vl  212 (599)
T PF06609_consen  200 YIFIIWSGIALVL  212 (599)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999876666654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=91.37  E-value=0.59  Score=42.87  Aligned_cols=75  Identities=15%  Similarity=0.183  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheec-cCcceehhh
Q 029822           36 LLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDN-LGWKVGFGI  114 (187)
Q Consensus        36 ~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~-~gw~~gF~i  114 (187)
                      .+.+..++.++|.|..-|++..+.++=...         +.+..+....+-+..+|.+++.-+.+++-+. .||+..|.+
T Consensus       130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~---------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~  200 (466)
T KOG2532|consen  130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPP---------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV  200 (466)
T ss_pred             hhHHHHHHhHHHHhHHHhhhhceeeeECCH---------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence            445566677788888888888777766654         3567888999989999999999888998887 999999998


Q ss_pred             hHHHH
Q 029822          115 PAAIM  119 (187)
Q Consensus       115 ~~v~~  119 (187)
                      -++.-
T Consensus       201 ~g~~g  205 (466)
T KOG2532|consen  201 FGIVG  205 (466)
T ss_pred             HHHHH
Confidence            88743

>PF13347 MFS_2: MFS/sugar transport protein

Probab=91.30  E-value=0.43  Score=42.12  Aligned_cols=92  Identities=17%  Similarity=0.129  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhh----eec---
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYI----QDN---  105 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i----~~~---  105 (187)
                      +...+++...+..++...+.-+-.+++.|..++.+        +|....+|-.++.++|.++...+.+.+    .+.   
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--------~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~  173 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--------ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTS  173 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh--------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccc
Confidence            44445666666788888888888899999877543        344555555556666665444444433    322   


Q ss_pred             cCcceehhhhHHHHHHHHHHHHhcCCc
Q 029822          106 LGWKVGFGIPAAIMLLSALCFFLASPF  132 (187)
Q Consensus       106 ~gw~~gF~i~~v~~~val~~f~~g~~~  132 (187)
                      .+|+....+.++..++..++.+...|.
T Consensus       174 ~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  174 NGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            168888777777666666655554444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=91.27  E-value=0.88  Score=39.46  Aligned_cols=72  Identities=6%  Similarity=-0.083  Sum_probs=48.0

Q ss_pred             HHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHH
Q 029822           41 FGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIML  120 (187)
Q Consensus        41 L~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~  120 (187)
                      ..+.+++.+...|....+..|. .          +++...|++.....++|..+++.+...+.+ .||+..|.+.++..+
T Consensus       106 ~~~~g~~~~~~~~~~~~~~~~~-~----------~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~  173 (396)
T TIGR00882       106 GLYLGFVFSAGAGAIEAYIEKV-S----------RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFAL  173 (396)
T ss_pred             HHHHHHHhccchhhHHHHHHHh-h----------hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHH
Confidence            3445566666666665554432 1          111235677778899999999999888865 599999998877655


Q ss_pred             HHHH
Q 029822          121 LSAL  124 (187)
Q Consensus       121 val~  124 (187)
                      +..+
T Consensus       174 ~~~~  177 (396)
T TIGR00882       174 ILML  177 (396)
T ss_pred             HHHH
Confidence            5443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=91.21  E-value=0.41  Score=41.49  Aligned_cols=70  Identities=14%  Similarity=0.147  Sum_probs=51.0

Q ss_pred             cccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHH
Q 029822           47 GGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSAL  124 (187)
Q Consensus        47 G~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~  124 (187)
                      +.|..-+...+...+..+++        +.+.+.+.++....++|..+++.+..++.|..||...|.+.++..+++++
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       316 ITGITSVAIYTAFMRFAGDG--------DQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCcc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            34444455555555554431        24566778888888999999999999999999999999988876666554

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=91.13  E-value=0.26  Score=43.35  Aligned_cols=78  Identities=13%  Similarity=0.100  Sum_probs=52.5

Q ss_pred             HHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc---C-cceehh
Q 029822           38 YLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL---G-WKVGFG  113 (187)
Q Consensus        38 ~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~---g-w~~gF~  113 (187)
                      .+...+.++|.+...|...+...+..+++         ++.+.+.++.++.++|..+++.+.+++-|+.   + ....|.
T Consensus       301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~---------~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~  371 (400)
T PRK11646        301 FTLICLFYIGSIIAEPARETLSASLADAR---------ARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWM  371 (400)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHhcCCcc---------cchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHH
Confidence            33344556777778888888888877643         4566778888889999999999999987763   2 234454


Q ss_pred             hhHHHHHHHHH
Q 029822          114 IPAAIMLLSAL  124 (187)
Q Consensus       114 i~~v~~~val~  124 (187)
                      +..+..++..+
T Consensus       372 ~~~~~~~~~~~  382 (400)
T PRK11646        372 MLGIIGLITLL  382 (400)
T ss_pred             HHHHHHHHHHH
Confidence            44443333333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=91.08  E-value=0.37  Score=43.53  Aligned_cols=53  Identities=8%  Similarity=0.078  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHHHHhcC
Q 029822           77 LKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLAS  130 (187)
Q Consensus        77 ~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~f~~g~  130 (187)
                      +.....+...+.++|+.+++.+.. .++..+|..+|.+.++.++++.+++++.+
T Consensus       381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            445556666677888877766543 34456799999999988888877766654

>PRK11462 putative transporter; Provisional

Probab=90.98  E-value=1.4  Score=39.70  Aligned_cols=83  Identities=18%  Similarity=0.301  Sum_probs=46.9

Q ss_pred             HHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheec-------cCcc
Q 029822           37 LYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDN-------LGWK  109 (187)
Q Consensus        37 ~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~-------~gw~  109 (187)
                      +++...+..++.-.+.-.-.+++++.-++.        ++|.+..+|..++.++|.+++....+.+...       .||.
T Consensus       112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~--------~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~  183 (460)
T PRK11462        112 AAITYTLLTLLYTVVNIPYCALGGVITNDP--------TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ  183 (460)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            333333445555555556666777765542        4567788888888888887775554332221       3566


Q ss_pred             eehhhhHHHHHHHHHHHH
Q 029822          110 VGFGIPAAIMLLSALCFF  127 (187)
Q Consensus       110 ~gF~i~~v~~~val~~f~  127 (187)
                      ....+.++..++..++.+
T Consensus       184 ~~~~i~~ii~~i~~~i~~  201 (460)
T PRK11462        184 GGIAVLSVVAFMMLAFCF  201 (460)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            655555554444443333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=90.78  E-value=1.9  Score=38.89  Aligned_cols=80  Identities=24%  Similarity=0.130  Sum_probs=55.0

Q ss_pred             HHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHH
Q 029822           38 YLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAA  117 (187)
Q Consensus        38 ~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v  117 (187)
                      .+.+.+..+|.....-..-++..+.-+++..      . +...=++.|.+.++|++++....+++-++.+++..|.++++
T Consensus        90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~------~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~  162 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADALVVELARREPE------S-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAA  162 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc------h-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHH
Confidence            3444455566666555555555555433221      2 44455788889999999998888899999999999999987


Q ss_pred             HHHHHHH
Q 029822          118 IMLLSAL  124 (187)
Q Consensus       118 ~~~val~  124 (187)
                      ...+..+
T Consensus       163 ~~~l~~~  169 (433)
T PF03092_consen  163 LPLLMLI  169 (433)
T ss_pred             HHHHHHH
Confidence            6555543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09848 glucuronide transporter; Provisional

Probab=90.54  E-value=0.54  Score=41.72  Aligned_cols=72  Identities=17%  Similarity=0.242  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCC-cccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCc
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDG-IKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGW  108 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~-~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw  108 (187)
                      .+.+++++.+.++|.|...+...++.+|.-|.++- ..+   ++...+++.+.++..+|..++..+.+++-+..||
T Consensus       319 ~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~---r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        319 LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGV---RIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            45566777888999999999999999888765431 111   3456677888888999999988877766544444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=90.53  E-value=0.46  Score=41.93  Aligned_cols=45  Identities=20%  Similarity=0.211  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC-cceehhhhHHHH
Q 029822           75 SALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG-WKVGFGIPAAIM  119 (187)
Q Consensus        75 ~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g-w~~gF~i~~v~~  119 (187)
                      +.+...+.+.+...++|..+++.+.+.+.+..| |..+|.+.++..
T Consensus       365 ~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       365 QARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            567888999999999999999999999999874 999998777643

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=90.48  E-value=0.9  Score=41.43  Aligned_cols=77  Identities=16%  Similarity=0.216  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheec-cCccee
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDN-LGWKVG  111 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~-~gw~~g  111 (187)
                      ....+++|.++.++|.|+....++.+++|-=.+         +.|...-+.+...+++|.+++..+....++. ++||..
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~---------~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~  211 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA---------HIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIP  211 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh---------hhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHH
Confidence            567889999999999999997777766665332         3556666667778889999995554444443 599988


Q ss_pred             hhhhHHH
Q 029822          112 FGIPAAI  118 (187)
Q Consensus       112 F~i~~v~  118 (187)
                      +++..+.
T Consensus       212 ~~~~~i~  218 (513)
T KOG0254|consen  212 LGLALIP  218 (513)
T ss_pred             HHHHHHH
Confidence            7776664

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=90.38  E-value=0.65  Score=41.69  Aligned_cols=87  Identities=24%  Similarity=0.295  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc-Cccee
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL-GWKVG  111 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~-gw~~g  111 (187)
                      ....+|.+-.++++|.+....-+++++-+.|.+          +.......|-.+.++|+.++....+.+.++. ||+.+
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk----------~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~a  167 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK----------RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGA  167 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc----------chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHH
Confidence            456677777788888888888888888888873          5566778888999999999999888887776 79999


Q ss_pred             hhhhHHHHHHHHHHHHhc
Q 029822          112 FGIPAAIMLLSALCFFLA  129 (187)
Q Consensus       112 F~i~~v~~~val~~f~~g  129 (187)
                      .++=++.-++++++.+-.
T Consensus       168 L~~WAl~allAl~~WlPq  185 (395)
T COG2807         168 LGFWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            888887777777765554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=90.38  E-value=0.14  Score=43.16  Aligned_cols=76  Identities=17%  Similarity=0.050  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHH-HHhhHhHHHHhhhhhhheeccC-cceeh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYY-VSVSASSMVAVTLIVYIQDNLG-WKVGF  112 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y-~~invG~li~~~~~~~i~~~~g-w~~gF  112 (187)
                      ..++..+.+.+++.|...+...++..|.++++.         +.+.+...| ++..+|..+++.+..++-++.| |+..+
T Consensus       313 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~  383 (394)
T TIGR00883       313 TLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV---------RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIG  383 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc---------eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHH
Confidence            445555666777788888888999999887532         233445433 4566788889999999988888 77665


Q ss_pred             hhhHHHH
Q 029822          113 GIPAAIM  119 (187)
Q Consensus       113 ~i~~v~~  119 (187)
                      ...++..
T Consensus       384 ~~~~~~~  390 (394)
T TIGR00883       384 YYLAALA  390 (394)
T ss_pred             HHHHHHH
Confidence            5555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=90.37  E-value=0.68  Score=40.87  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=58.7

Q ss_pred             hhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCc-ccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcc
Q 029822           32 SQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGI-KSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWK  109 (187)
Q Consensus        32 ~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~-~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~  109 (187)
                      .+.+.+++...+.++|.|+......++.+|.-|.++-+ ++   ++...+++.+-+...+|..++..+...+-+..||.
T Consensus       313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~---r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGR---RREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCC---CchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            35677888888999999999999999999998865421 12   45677888888899999999988888776655554

>PRK09528 lacY galactoside permease; Reviewed

Probab=90.14  E-value=0.43  Score=41.85  Aligned_cols=48  Identities=8%  Similarity=0.082  Sum_probs=36.4

Q ss_pred             HHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHHHHh
Q 029822           80 YFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFL  128 (187)
Q Consensus        80 ~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~f~~  128 (187)
                      .+.......++|..+++.+.+++.+ .+|+..|.+.++..+++++.++.
T Consensus       142 ~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~  189 (420)
T PRK09528        142 EYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF  189 (420)
T ss_pred             cchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence            4566667789999999998888876 58999999888766665555444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=89.93  E-value=0.51  Score=39.40  Aligned_cols=65  Identities=17%  Similarity=0.190  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG  107 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g  107 (187)
                      ...+++...+.++|.|...+...++..|.+++         +.+.+.+..++...++|..+++.+.+++.|++|
T Consensus       301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       301 FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA---------ELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            45667777888899998888888888888763         467889999999999999999999988877653

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=89.89  E-value=0.92  Score=40.32  Aligned_cols=54  Identities=19%  Similarity=0.144  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHhhHhHHHHhhhhhhheecc---CcceehhhhHHHHHHHHHHHHh
Q 029822           75 SALKSYFSWYYVSVSASSMVAVTLIVYIQDNL---GWKVGFGIPAAIMLLSALCFFL  128 (187)
Q Consensus        75 ~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~---gw~~gF~i~~v~~~val~~f~~  128 (187)
                      +..........+..++|+++++.+++++.+..   +|..+|.+.++..+++.+.+..
T Consensus       392 ~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       392 RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            35666777778889999999999999887653   4888999988888887766544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=89.84  E-value=0.92  Score=39.35  Aligned_cols=82  Identities=16%  Similarity=0.104  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHH-HHhhHhHHHHhhhhhhheeccCccee
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYY-VSVSASSMVAVTLIVYIQDNLGWKVG  111 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y-~~invG~li~~~~~~~i~~~~gw~~g  111 (187)
                      ....+++...+-++..|.+-+....+..++ ++         +.+..+...|. .+..+|..+++.+.+++.|++|+ ..
T Consensus       292 ~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~---------~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~  360 (382)
T TIGR00902       292 AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG---------SEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GT  360 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HH
Confidence            345566677788888888888888777765 32         23344555554 36779999999999999999987 66


Q ss_pred             hhhhHHHHHHHHHH
Q 029822          112 FGIPAAIMLLSALC  125 (187)
Q Consensus       112 F~i~~v~~~val~~  125 (187)
                      |.+.++..++++++
T Consensus       361 ~~~~~~~~~~~~~~  374 (382)
T TIGR00902       361 FVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777766666554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=89.80  E-value=0.32  Score=43.13  Aligned_cols=52  Identities=17%  Similarity=0.252  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHhhHhH-HHHhhhhhhheeccCcceehhhhHHHHHHHHHHHH
Q 029822           76 ALKSYFSWYYVSVSASS-MVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFF  127 (187)
Q Consensus        76 ~~~~~F~~~Y~~invG~-li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~f~  127 (187)
                      .+.....+++...++|+ ++++.+.+++-++.||..+|.+.++..+++++..+
T Consensus       378 ~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  430 (438)
T TIGR00712       378 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  430 (438)
T ss_pred             heeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            45667788877788875 67899999999999999999888776666665544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=88.79  E-value=2.6  Score=38.15  Aligned_cols=50  Identities=16%  Similarity=0.098  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHhhHhHHHHhhhhhhheec----------cCcceehhhhHHHHHHHHH
Q 029822           75 SALKSYFSWYYVSVSASSMVAVTLIVYIQDN----------LGWKVGFGIPAAIMLLSAL  124 (187)
Q Consensus        75 ~~~~~~F~~~Y~~invG~li~~~~~~~i~~~----------~gw~~gF~i~~v~~~val~  124 (187)
                      +.|.....+.+...++|+++++.+.+++.+.          .++...|.+-++..+++.+
T Consensus       424 ~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i  483 (502)
T TIGR00887       424 RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL  483 (502)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999998773          3444556666655555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=88.66  E-value=1  Score=40.84  Aligned_cols=100  Identities=10%  Similarity=0.058  Sum_probs=63.3

Q ss_pred             chhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee------
Q 029822           31 GSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD------  104 (187)
Q Consensus        31 ~~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~------  104 (187)
                      .....+|.++|.+++.|.|..+....+++.+..+++..      ..|-..-.-|   ..+|+.+++.+..++-.      
T Consensus       101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a------~~rlnl~q~f---n~lGa~~gp~~g~~lils~~~~~  171 (422)
T COG0738         101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA------AFRLNLAQAF---NGLGAILGPLLGSSLILSGVALT  171 (422)
T ss_pred             hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH------HHHHHHHHHh---hhhHHHHHHHHHHHHHHhhhhhc
Confidence            34567888899999999999999999999999886532      2222222222   45677777666666543      


Q ss_pred             -------------ccCcceehhhhHHH-HHHHHHHHHhcCCceeecCCC
Q 029822          105 -------------NLGWKVGFGIPAAI-MLLSALCFFLASPFYVKSKAN  139 (187)
Q Consensus       105 -------------~~gw~~gF~i~~v~-~~val~~f~~g~~~y~~~~p~  139 (187)
                                   -..|+..|.+-+.. .+++++++..+.+.-....|+
T Consensus       172 ~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~  220 (422)
T COG0738         172 MSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPS  220 (422)
T ss_pred             cCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccc
Confidence                         12477777766653 444555444444544433333

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=88.55  E-value=2  Score=38.91  Aligned_cols=81  Identities=15%  Similarity=0.057  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      ....+.+...+.+++.++.-.+...+.+|.+.+         +.|...-++ +.....|+.+++...+|+-.  +||+-+
T Consensus       170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~---------~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~  237 (521)
T KOG0255|consen  170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSP---------KQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLF  237 (521)
T ss_pred             cHHHHHHHHHHHHhhccchhHHhHhhheeecCc---------chhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHH
Confidence            456677777788899999999999999999885         345556566 66777777778888888877  899999


Q ss_pred             hhhHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALC  125 (187)
Q Consensus       113 ~i~~v~~~val~~  125 (187)
                      ++..+.-++.++.
T Consensus       238 ~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  238 WIISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988765555444

>TIGR01272 gluP glucose/galactose transporter

Probab=88.03  E-value=0.56  Score=40.11  Aligned_cols=70  Identities=13%  Similarity=0.121  Sum_probs=54.3

Q ss_pred             HHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHH
Q 029822           39 LAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAI  118 (187)
Q Consensus        39 ~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~  118 (187)
                      .++.++++|.+.+.|+..+...+.+.++.        ...+..   .....+|+.+.+.+..++.|..|.+.+|.++.++
T Consensus       235 ~~~~l~g~~~s~i~P~~~s~a~~~~~~~~--------~~asai---~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       235 WFVLALGLFNSIMFPTIFSLALNALGRHT--------SQGSGI---LCLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhh--------hhhHHH---HHHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            35667889999999999999999887532        223333   2456789999999999999999999999877765


Q ss_pred             H
Q 029822          119 M  119 (187)
Q Consensus       119 ~  119 (187)
                      .
T Consensus       304 ~  304 (310)
T TIGR01272       304 Y  304 (310)
T ss_pred             H
Confidence            4

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=87.90  E-value=1  Score=40.57  Aligned_cols=72  Identities=17%  Similarity=0.194  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCC-CcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCc
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGD-GIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGW  108 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~-~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw  108 (187)
                      ..++++...+.++|.|..-+...++.+|.-|.++ ..++   ++...+|+++-++..+|..++..+.+++-+..||
T Consensus       324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~---R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGI---RCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3455666677888899888888999999977543 1122   3456688888889999999998888887665555

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=87.81  E-value=1.5  Score=39.64  Aligned_cols=75  Identities=5%  Similarity=-0.049  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc-Ccceehh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL-GWKVGFG  113 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~-gw~~gF~  113 (187)
                      ..++++..+.+++.|+.-+...+...+.|.+         +.|.....+.|...++++.+++.+..++.+.. +|+..+.
T Consensus       343 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~---------~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~  413 (490)
T PRK10642        343 GLIFAGLLMLAVILNCFTGVMASTLPAMFPT---------HIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAY  413 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH
Confidence            3444555555555555455556666676653         24556677766656666677888888887654 4555444


Q ss_pred             hhHHH
Q 029822          114 IPAAI  118 (187)
Q Consensus       114 i~~v~  118 (187)
                      +..+.
T Consensus       414 ~~~~~  418 (490)
T PRK10642        414 YLMVV  418 (490)
T ss_pred             HHHHH
Confidence            33333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=87.72  E-value=2.7  Score=37.81  Aligned_cols=82  Identities=7%  Similarity=0.084  Sum_probs=43.8

Q ss_pred             HHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhh-hh---e---eccCcce
Q 029822           38 YLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIV-YI---Q---DNLGWKV  110 (187)
Q Consensus        38 ~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~-~i---~---~~~gw~~  110 (187)
                      ++...+..++...+...-.+++++.-++.        ++|.+.++|-.+..|+|+++...+.. .+   .   +..||+.
T Consensus       110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~--------~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~  181 (473)
T PRK10429        110 CVTYILWGMTYTIMDIPFWSLVPTLTLDK--------REREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQM  181 (473)
T ss_pred             HHHHHHHHHHHHHHcchHHhhhHHhCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence            33333445566666666777777765432        34556666656667777665544332 22   1   1235665


Q ss_pred             ehhhhHHHHHHHHHHHH
Q 029822          111 GFGIPAAIMLLSALCFF  127 (187)
Q Consensus       111 gF~i~~v~~~val~~f~  127 (187)
                      ...+.++.+++..++-+
T Consensus       182 ~~~i~~~~~~~~~~~~~  198 (473)
T PRK10429        182 FTLVLIAFFIVSTIITL  198 (473)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555544444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=87.33  E-value=0.45  Score=41.29  Aligned_cols=46  Identities=17%  Similarity=0.280  Sum_probs=37.2

Q ss_pred             HHHH-HHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHH
Q 029822           80 YFSW-YYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALC  125 (187)
Q Consensus        80 ~F~~-~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~  125 (187)
                      .+.. +.++.++|+.+++.+.+++-+..||...|.+.++..++..++
T Consensus       344 ~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       344 IYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             eehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            3444 446899999999999999999999999999988876665544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=87.00  E-value=1.3  Score=41.20  Aligned_cols=54  Identities=24%  Similarity=0.262  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHHHHh
Q 029822           75 SALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFL  128 (187)
Q Consensus        75 ~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~f~~  128 (187)
                      ..+.+.++.|.+..+.+..+|..+.+++.+.+|-...+.+++++++++.++.+.
T Consensus       339 ~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  339 WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999888899999999999999999999999888777776544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=86.85  E-value=2.1  Score=37.19  Aligned_cols=72  Identities=10%  Similarity=-0.112  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGI  114 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i  114 (187)
                      ..+++++.+.++|.|..-+.......+..+          +.+.+.+..+++..++|..++..+..++-+..++....+.
T Consensus       310 ~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~  379 (406)
T PRK15402        310 LWLTAGLSLYAFGIGLANAGLYRLTLFSSD----------VSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLF  379 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHhhhcc----------ccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Confidence            445667777888888877766554433222          1345677777777888888888888888777776554444


Q ss_pred             hH
Q 029822          115 PA  116 (187)
Q Consensus       115 ~~  116 (187)
                      ++
T Consensus       380 ~~  381 (406)
T PRK15402        380 NL  381 (406)
T ss_pred             HH
Confidence            43

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=86.78  E-value=2.2  Score=36.85  Aligned_cols=73  Identities=12%  Similarity=0.033  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGI  114 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i  114 (187)
                      ..+..+..+.++|.|..-|...+...+.+++          .+......+....++|..++..+..++.++..+..+..+
T Consensus       300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~  369 (394)
T PRK11652        300 WTLLVPAALFFFGAGMLFPLATSGAMEPFPY----------LAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSLGLLM  369 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------cchHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence            4456666777888888888888888777653          223345666667789999999888888777655554444


Q ss_pred             hHH
Q 029822          115 PAA  117 (187)
Q Consensus       115 ~~v  117 (187)
                      ..+
T Consensus       370 ~~~  372 (394)
T PRK11652        370 TLM  372 (394)
T ss_pred             HHH
Confidence            433

>TIGR00806 rfc RFC reduced folate carrier

Probab=86.67  E-value=2.1  Score=39.83  Aligned_cols=82  Identities=13%  Similarity=0.066  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCccee-
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVG-  111 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~g-  111 (187)
                      ....+.+..++.++|+|+.- .....++.-|++         +.|.+..+++..+.++|.+++..+..++. ++||+.= 
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~---------kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~  182 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP---------SRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYS  182 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHH
Confidence            46677788889999999988 888888888885         45677888899999999999999998854 5788765 


Q ss_pred             --hhhhHHHHHHHHHH
Q 029822          112 --FGIPAAIMLLSALC  125 (187)
Q Consensus       112 --F~i~~v~~~val~~  125 (187)
                        +.|+...+.+++++
T Consensus       183 ~Ln~Isl~s~~~a~~~  198 (511)
T TIGR00806       183 TLNIISLVFMTFSVFL  198 (511)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence              34566667777765

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00898 2A0119 cation transport protein

Probab=86.37  E-value=1.3  Score=39.63  Aligned_cols=68  Identities=10%  Similarity=0.037  Sum_probs=45.9

Q ss_pred             hcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHH
Q 029822           46 LGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSAL  124 (187)
Q Consensus        46 vG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~  124 (187)
                      ++.++.-+....+.+|.|..         +.|.....+......+|+++++.+.. +. ..++...|.+.++..+++.+
T Consensus       422 ~~~~~~~~~~~~~~~e~~p~---------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~  489 (505)
T TIGR00898       422 FGITSAFQMVYLYTAELYPT---------VVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGI  489 (505)
T ss_pred             HHHHHHHHHHHHHhcccccH---------HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHH
Confidence            44444446666677777763         45677889999999999999988877 43 34566666666665544443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=86.04  E-value=1.4  Score=40.36  Aligned_cols=90  Identities=14%  Similarity=0.151  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee-------
Q 029822           32 SQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD-------  104 (187)
Q Consensus        32 ~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~-------  104 (187)
                      .+...+..+..++++|++.+.|...++..+.-++         +.+......|+++.-+|++++..+......       
T Consensus       380 vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~---------~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~  450 (500)
T PRK09584        380 VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ---------RLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDP  450 (500)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            4455677778889999999999999998887443         567888888888888888887666543321       


Q ss_pred             ---ccCcceehhhhHHHHHHHHHHHHhcC
Q 029822          105 ---NLGWKVGFGIPAAIMLLSALCFFLAS  130 (187)
Q Consensus       105 ---~~gw~~gF~i~~v~~~val~~f~~g~  130 (187)
                         ..++...|..-++..++..+++++-.
T Consensus       451 ~~~~~~~~~~f~~~~~~~~~~a~~~~~~~  479 (500)
T PRK09584        451 LMSLEVYGRVFLQIGIATAVIAVLMLLTA  479 (500)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence               12366777776665444343444333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=85.70  E-value=2.4  Score=36.61  Aligned_cols=41  Identities=7%  Similarity=-0.033  Sum_probs=31.9

Q ss_pred             HHHhhHhHHHHhhhhhhhee-ccCcceehhhhHHHHHHHHHH
Q 029822           85 YVSVSASSMVAVTLIVYIQD-NLGWKVGFGIPAAIMLLSALC  125 (187)
Q Consensus        85 Y~~invG~li~~~~~~~i~~-~~gw~~gF~i~~v~~~val~~  125 (187)
                      ....++|..+++.+.+++-| +.||+..|.+.++...+++..
T Consensus       330 ~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (382)
T PRK10091        330 QIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS  371 (382)
T ss_pred             HHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence            45678999999999988877 478999999988765555444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=85.25  E-value=1.3  Score=44.22  Aligned_cols=76  Identities=9%  Similarity=-0.079  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee-ccCcceeh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD-NLGWKVGF  112 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~-~~gw~~gF  112 (187)
                      .+.+++++.++++|.|..-+...++..+..+++         .+.+.+..+.+..++|..++..+...+.+ ..++...|
T Consensus       334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~---------~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~  404 (1140)
T PRK06814        334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPA---------HRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWII  404 (1140)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc---------cceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            355667778888999988888888888877653         34556677777788888888877777763 45666666


Q ss_pred             hhhHHH
Q 029822          113 GIPAAI  118 (187)
Q Consensus       113 ~i~~v~  118 (187)
                      .+.++.
T Consensus       405 ~~~~~~  410 (1140)
T PRK06814        405 LFIALA  410 (1140)
T ss_pred             HHHHHH
Confidence            655544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=84.70  E-value=2.2  Score=38.74  Aligned_cols=85  Identities=15%  Similarity=0.121  Sum_probs=60.4

Q ss_pred             HHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC---cceehh
Q 029822           37 LYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG---WKVGFG  113 (187)
Q Consensus        37 ~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g---w~~gF~  113 (187)
                      +++.=.++++|.|.+-.. .+....-|.++         ++.....++= ..|+|..+...+.|.+....|   |+..-.
T Consensus       108 ll~~gll~G~~GasFav~-m~~~s~~fP~~---------~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~  176 (417)
T COG2223         108 LLVIGLLLGLAGASFAVG-MPNASFFFPKE---------KQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAG  176 (417)
T ss_pred             HHHHHHHHhcccceehcc-cccccccCChh---------hhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            333333455555555433 34556667653         3455555655 899999999999999999999   999999


Q ss_pred             hhHHHHHHHHHHHHhcCCc
Q 029822          114 IPAAIMLLSALCFFLASPF  132 (187)
Q Consensus       114 i~~v~~~val~~f~~g~~~  132 (187)
                      +..+.++++.+.+++..+-
T Consensus       177 i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         177 IYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHHHHHHHHHHHHHHhCC
Confidence            9999999988887776544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=84.51  E-value=2.1  Score=42.33  Aligned_cols=76  Identities=13%  Similarity=0.046  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee-ccCcceeh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD-NLGWKVGF  112 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~-~~gw~~gF  112 (187)
                      ...+.+.+.+++++.|..-+...++..+..++         +.+.+.+.++++..++|.+++..+...+.. .+++...|
T Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~---------~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~  392 (1146)
T PRK08633        322 LASVLVLFFLFGFSAGLFIVPLNALIQFRAPE---------KELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLF  392 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc---------cchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            34455666777888888888888887777654         245677888888888888766655544432 23444455


Q ss_pred             hhhHHH
Q 029822          113 GIPAAI  118 (187)
Q Consensus       113 ~i~~v~  118 (187)
                      .+.++.
T Consensus       393 ~~~~~~  398 (1146)
T PRK08633        393 YLIALV  398 (1146)
T ss_pred             HHHHHH
Confidence            554443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=83.98  E-value=9.4  Score=34.59  Aligned_cols=96  Identities=21%  Similarity=0.187  Sum_probs=62.6

Q ss_pred             chhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC---
Q 029822           31 GSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG---  107 (187)
Q Consensus        31 ~~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g---  107 (187)
                      ........++..++++|.+.-.....++.+|.-+++         +|.+.-..-|...-+|..++.++...+-+.++   
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~---------~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~r  156 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE---------RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPER  156 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh---------hhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence            344556666667777888878888888999987753         44555566666667888888887777666554   


Q ss_pred             -cceehhhhHHHHHHHHHHHHhcCCceee
Q 029822          108 -WKVGFGIPAAIMLLSALCFFLASPFYVK  135 (187)
Q Consensus       108 -w~~gF~i~~v~~~val~~f~~g~~~y~~  135 (187)
                       ++..-.++.+.+.+.++..+-.++++..
T Consensus       157 L~~v~~~~a~i~~~l~~ia~wg~E~r~~~  185 (403)
T PF03209_consen  157 LIQVIQGVALIALLLNLIALWGQEPRRSR  185 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence             2333444445555666655656666544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=83.77  E-value=4.5  Score=36.51  Aligned_cols=59  Identities=19%  Similarity=0.108  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHHHHhcCCceee
Q 029822           77 LKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVK  135 (187)
Q Consensus        77 ~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~f~~g~~~y~~  135 (187)
                      .+..-+++--+.|+|..+|..+...+-|++||.....++++.++++++..+...+.+++
T Consensus       333 ~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~  391 (394)
T COG2814         333 ADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDRR  391 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34555666567777777777777777788999999999999999998887776665544

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=83.48  E-value=1.5  Score=40.60  Aligned_cols=79  Identities=15%  Similarity=0.199  Sum_probs=61.9

Q ss_pred             HHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC-cceehhhhHHHHHH
Q 029822           43 LMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG-WKVGFGIPAAIMLL  121 (187)
Q Consensus        43 liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g-w~~gF~i~~v~~~v  121 (187)
                      +.++..|.+-...+....|....         ++..+.|.+..+...++.++++-+..++.|..| |...|..+.+.+++
T Consensus       397 ~fG~~~g~~~~l~~~i~~~~~g~---------~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~  467 (509)
T KOG2504|consen  397 LFGFCVGSFSSLTPVILVDLVGL---------EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLL  467 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCh---------hhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHH
Confidence            34455566666666666677664         467888999999999999999999999998877 99999999999988


Q ss_pred             HHHHHHhcC
Q 029822          122 SALCFFLAS  130 (187)
Q Consensus       122 al~~f~~g~  130 (187)
                      +...++.-.
T Consensus       468 s~~~~~~~~  476 (509)
T KOG2504|consen  468 SAVLLLILR  476 (509)
T ss_pred             HHHHHHHhH
Confidence            886654443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=83.09  E-value=2.6  Score=36.71  Aligned_cols=45  Identities=13%  Similarity=0.152  Sum_probs=33.9

Q ss_pred             HHHHHHhhHhHHHHhhhhhhheeccCcceehhhhHHHHHHHHHHH
Q 029822           82 SWYYVSVSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCF  126 (187)
Q Consensus        82 ~~~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~~v~~~val~~f  126 (187)
                      .++....++|..++..+.+++.|..||+..|.+.++..++++++.
T Consensus       342 ~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        342 ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            444444567777666678899999999999999988777766654

>PRK15075 citrate-proton symporter; Provisional

Probab=82.93  E-value=1.9  Score=38.15  Aligned_cols=60  Identities=15%  Similarity=0.039  Sum_probs=38.9

Q ss_pred             HHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhH-hHHHHhhhhhhheeccCcc
Q 029822           41 FGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSA-SSMVAVTLIVYIQDNLGWK  109 (187)
Q Consensus        41 L~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~inv-G~li~~~~~~~i~~~~gw~  109 (187)
                      +++++++.|...+...+...|.++++         .+...+.+.|...+. ++.+++.+.+++.++.|+.
T Consensus       338 ~~~~~~~~g~~~~~~~~~~~e~~p~~---------~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        338 ELWLSFLYGSYNGAMVVALTEVMPAE---------VRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCC---------ccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            34445566666666667777777643         345566666554443 4667888889998888753

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=82.47  E-value=3.1  Score=35.92  Aligned_cols=79  Identities=18%  Similarity=0.128  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHH-HHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYY-VSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y-~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      .+.+++...+.+++.|..-+.......++ +   +      .++.....++. +..++|..+++.+.+++.|.+|+. .|
T Consensus       293 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~---~------~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~  361 (382)
T PRK11128        293 LPWLIVIQILHCGTFTVCHLAAMRYIAAR-P---G------SEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VF  361 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C---H------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HH
Confidence            44556666677777777666655554443 2   1      22345566664 456778788999999999998874 55


Q ss_pred             hhhHHHHHHHH
Q 029822          113 GIPAAIMLLSA  123 (187)
Q Consensus       113 ~i~~v~~~val  123 (187)
                      .+.++..++++
T Consensus       362 ~~~~~~~~~~~  372 (382)
T PRK11128        362 WVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHH
Confidence            55554444443

>PRK12307 putative sialic acid transporter; Provisional

Probab=82.16  E-value=3.5  Score=35.83  Aligned_cols=51  Identities=8%  Similarity=-0.021  Sum_probs=38.8

Q ss_pred             ccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCccee
Q 029822           52 RSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVG  111 (187)
Q Consensus        52 kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~g  111 (187)
                      -+....+..|.+++         +.+.+.....+...++|+.+++.+.+++.+..|+..+
T Consensus       339 ~~~~~~~~~~~~p~---------~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~  389 (426)
T PRK12307        339 GGLVPKFLYDYFPL---------EVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA  389 (426)
T ss_pred             hHHHHHHHHHhCcH---------HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence            34455566666653         3567788888899999999999999999998886554

>TIGR00895 2A0115 benzoate transport

Probab=82.04  E-value=2.2  Score=35.99  Aligned_cols=59  Identities=17%  Similarity=0.095  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhh
Q 029822           35 MLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYI  102 (187)
Q Consensus        35 ~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i  102 (187)
                      ..+++...+.+++.|+..+...+...|.+++         +.+...+.+++...++|..+++.+.+++
T Consensus       339 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       339 TLLLLLGAIAGFFVNGGQSGLYALMALFYPT---------AIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH---------HHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            4455666677888888888888888888763         4567889999999999999998887654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=81.94  E-value=4  Score=34.49  Aligned_cols=71  Identities=13%  Similarity=0.237  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhH-hHHHHhhhhhhheeccCcceehhh
Q 029822           36 LLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSA-SSMVAVTLIVYIQDNLGWKVGFGI  114 (187)
Q Consensus        36 ~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~inv-G~li~~~~~~~i~~~~gw~~gF~i  114 (187)
                      .++....+.++|.+..-+.......|.+++          ++.+....+....+. |++.++. .+.+.++.+|...|..
T Consensus       302 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       302 MIIGPMMFVGIGNSMISSIAMAYALEDFPH----------VAGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcc----------cchHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHHHHH
Confidence            444455567788888888777766665532          234455555554443 4544444 4566666566555544


Q ss_pred             hHH
Q 029822          115 PAA  117 (187)
Q Consensus       115 ~~v  117 (187)
                      ...
T Consensus       371 ~~~  373 (385)
T TIGR00710       371 LVL  373 (385)
T ss_pred             HHH
Confidence            433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10504 putative transporter; Provisional

Probab=81.11  E-value=2.8  Score=37.19  Aligned_cols=62  Identities=16%  Similarity=0.028  Sum_probs=43.3

Q ss_pred             HHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCc
Q 029822           38 YLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGW  108 (187)
Q Consensus        38 ~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw  108 (187)
                      .+.+.+.++|.|..-+....+..+..++         +.+...+.++.+..++|..+++.+...+-+..|+
T Consensus       357 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        357 PFVLFLQGMVNSTRFSSMNTLTLKDLPD---------NLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCH---------HhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3445556677777777777777776653         3456678888889999988888887776555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
2xut_A	524	Proton/peptide symporter family protein; transport	5e-26
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	3e-07

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  102 bits (257), Expect = 5e-26
 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 28  SATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVS 87
           +     +   Y    L++LG GGI+    +F  +Q ++ +      +S  +  F  +Y +
Sbjct: 103 AIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQKAFDMFYFT 156

Query: 88  VSASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLI 147
           ++  S  A   +  +  N G  V FGIP  +M ++ + F+L    Y+          G +
Sbjct: 157 INFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFL 216

Query: 148 QVLVASYKNR 157
            V+ ++   +
Sbjct: 217 PVIRSALLTK 226

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 29  ATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSV 88
           A       L+ +  L+ +G G ++ +         ++ D           + FS +   +
Sbjct: 103 ALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD-------RRRDAGFSIFVFGI 155

Query: 89  SASSMVAVTLIVYIQDNLGWKVGFGIPAAIMLLSALCFFLASPFYVK 135
           +  + +A  ++   Q+  G+ V F + A  M +  L ++      + 
Sbjct: 156 NLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
2xut_A	524	Proton/peptide symporter family protein; transport	98.77
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.25
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.57
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.54
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.9
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	96.27
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.41
2xut_A	524	Proton/peptide symporter family protein; transport	95.06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	94.98
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	93.41
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	92.54
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	89.49

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.77  E-value=1e-08  Score=90.00  Aligned_cols=120  Identities=23%  Similarity=0.459  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|...|+..++++|.+++++.      .+....|++++.+.++|..+++.+..++.+..||+..|
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f  181 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK------SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF  181 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT------THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            456788888999999999999999999999986542      34577899999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCceeecCCCCChhHHHHHHHHHHHHhcC
Q 029822          113 GIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRH  158 (187)
Q Consensus       113 ~i~~v~~~val~~f~~g~~~y~~~~p~gs~l~~~~~v~~~a~~~~~  158 (187)
                      .+.++..++++++++...+.++..+|++++..+..+.+..++++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (524)
T 2xut_A          182 GIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV  227 (524)
T ss_dssp             HHHHHHHHHHHHHHHSSSSSCCCCC--------------------C
T ss_pred             HHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhh
Confidence            9999988888877776666665555665555555666666666654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.25  E-value=6.7e-07  Score=77.60  Aligned_cols=93  Identities=16%  Similarity=0.301  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|+..|+..++.+|.+++++       +.+...+++++.+.++|..+++.+..++.++.||++.|
T Consensus       107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f  179 (491)
T 4aps_A          107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD-------RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAF  179 (491)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT-------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc-------ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            34667888889999999999999999999998654       36788999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCc
Q 029822          113 GIPAAIMLLSALCFFLASPF  132 (187)
Q Consensus       113 ~i~~v~~~val~~f~~g~~~  132 (187)
                      .+.++..++++++++...+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~  199 (491)
T 4aps_A          180 SLAAIGMFIGLLVYYFGGKK  199 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCcc
Confidence            99988887777776554333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.57  E-value=8.6e-05  Score=63.02  Aligned_cols=83  Identities=12%  Similarity=0.088  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC-cceeh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG-WKVGF  112 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g-w~~gF  112 (187)
                      ...++++..+.++|.|...+...++.+|.+++         ++|...+.++..+.++|.++++.+..++-+..| |++.|
T Consensus       119 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~---------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f  189 (451)
T 1pw4_A          119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ---------KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL  189 (451)
T ss_dssp             SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT---------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCT
T ss_pred             HHHHHHHHHHHHHHhhhccchHHHHHHHHCCc---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            45677888899999999999999999999974         357888999999999999999999988778888 99999


Q ss_pred             hhhHHHHHHHHHH
Q 029822          113 GIPAAIMLLSALC  125 (187)
Q Consensus       113 ~i~~v~~~val~~  125 (187)
                      .+.++..++..++
T Consensus       190 ~~~~~~~~~~~~~  202 (451)
T 1pw4_A          190 YMPAFCAILVALF  202 (451)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9988765554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.54  E-value=0.00013  Score=61.68  Aligned_cols=87  Identities=18%  Similarity=0.171  Sum_probs=69.7

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhe-eccC----
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQ-DNLG----  107 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~-~~~g----  107 (187)
                      +.+.++++..+.++|.|...+...++++|.++++         +|...++++..+.++|..+++.+..++. +..+    
T Consensus       116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  186 (438)
T 3o7q_A          116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES---------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ  186 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST---------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCH
T ss_pred             cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            4677888999999999999999999999999753         4566789999999999999999988887 5554    


Q ss_pred             ---------------------cceehhhhHHHHHHHHHHHHh
Q 029822          108 ---------------------WKVGFGIPAAIMLLSALCFFL  128 (187)
Q Consensus       108 ---------------------w~~gF~i~~v~~~val~~f~~  128 (187)
                                           |++.|.+.++..++..++++.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          187 DVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                 899997777655444444333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.07  E-value=7.2e-05  Score=62.42  Aligned_cols=83  Identities=13%  Similarity=0.151  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +...++++..+.++|.|...+...++..|.++++         ++...+.++..+.++|..+++.+..++.+..||+..|
T Consensus        87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  157 (375)
T 2gfp_A           87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT---------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACY  157 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHH
Confidence            4566777788889999999999999999999753         3455788888999999999999999999999999999


Q ss_pred             hhhHHHHHHHHH
Q 029822          113 GIPAAIMLLSAL  124 (187)
Q Consensus       113 ~i~~v~~~val~  124 (187)
                      .+.++..++..+
T Consensus       158 ~~~~~~~~~~~~  169 (375)
T 2gfp_A          158 LFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            988876655554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.90  E-value=0.0017  Score=54.89  Aligned_cols=87  Identities=15%  Similarity=0.103  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhH-hHHHHhhhhhhheeccCccee
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSA-SSMVAVTLIVYIQDNLGWKVG  111 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~inv-G~li~~~~~~~i~~~~gw~~g  111 (187)
                      ....+.+.+.+++++.++..+....+..+.+++         +.+...+.++....++ |..+++.+.+++.+..||...
T Consensus       345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  415 (451)
T 1pw4_A          345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPK---------KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG  415 (451)
T ss_dssp             CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT---------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred             CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            345667777788888888888888888888874         3578899999999999 999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHh
Q 029822          112 FGIPAAIMLLSALCFFL  128 (187)
Q Consensus       112 F~i~~v~~~val~~f~~  128 (187)
                      |.+.++..+++.+.++.
T Consensus       416 ~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          416 FMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998887777766554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=96.27  E-value=0.0044  Score=53.34  Aligned_cols=90  Identities=16%  Similarity=0.125  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      ....+.++..+.++|.+..-|...++..+.++++.         +.....+++...++|..+++.+.+++.+. ++...|
T Consensus       385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~  454 (491)
T 4aps_A          385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---------NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYF  454 (491)
T ss_dssp             CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC---------SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence            45667778888999999999999999999987643         34566778889999999999998888764 677788


Q ss_pred             hhhHHHHHHHHHHHHhcCCc
Q 029822          113 GIPAAIMLLSALCFFLASPF  132 (187)
Q Consensus       113 ~i~~v~~~val~~f~~g~~~  132 (187)
                      .+.++..+++.++++...+.
T Consensus       455 ~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          455 SYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             HHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88887776666665554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.41  E-value=0.0075  Score=51.44  Aligned_cols=82  Identities=9%  Similarity=0.049  Sum_probs=57.9

Q ss_pred             HHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHH-HHHHhhHhHHHHhhhhhhheeccCcceehhhh
Q 029822           37 LYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSW-YYVSVSASSMVAVTLIVYIQDNLGWKVGFGIP  115 (187)
Q Consensus        37 ~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~-~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~  115 (187)
                      +.+...+.+++.+..-+....+..|.+++         +.+...+.+ +..+.++|+.+++.+.+++.++.||...|.+.
T Consensus       315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~---------~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~  385 (417)
T 2cfq_A          315 VVILKTLHMFEVPFLLVGCFKYITSQFEV---------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL  385 (417)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHSCH---------HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence            33344444555555555556677777763         355666777 45677899999999999998888999999988


Q ss_pred             HHHHHHHHHHHH
Q 029822          116 AAIMLLSALCFF  127 (187)
Q Consensus       116 ~v~~~val~~f~  127 (187)
                      ++..+++.++.+
T Consensus       386 ~~~~l~~~~~~~  397 (417)
T 2cfq_A          386 GLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            887777766543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=95.06  E-value=0.0089  Score=51.93  Aligned_cols=92  Identities=18%  Similarity=0.273  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc--Cc--
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL--GW--  108 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~--gw--  108 (187)
                      ....+.++..+.++|.+..-+...++..+..+++         .+.....+++...++|..+++.+.+++.+..  +|  
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~---------~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~  474 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA---------MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIV  474 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT---------CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH---------HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            3455666778888999999999999999988753         3456778888899999999999999887732  23  


Q ss_pred             -------ceehhhhHHHHHHHHHHHHhcCCce
Q 029822          109 -------KVGFGIPAAIMLLSALCFFLASPFY  133 (187)
Q Consensus       109 -------~~gF~i~~v~~~val~~f~~g~~~y  133 (187)
                             ...|.+.++..+++.++++...+.+
T Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (524)
T 2xut_A          475 QTGMSVTAFQMFFFAGFAILAAIVFALYARSY  506 (524)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   2236666666666666554444433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=94.98  E-value=0.042  Score=46.05  Aligned_cols=77  Identities=16%  Similarity=0.115  Sum_probs=56.4

Q ss_pred             HHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC-cceehhhhH
Q 029822           38 YLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG-WKVGFGIPA  116 (187)
Q Consensus        38 ~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g-w~~gF~i~~  116 (187)
                      .+.+.+++++.+..-|...++..+.+.++          +.....+.. ..++|..+++.+.+++.+..| |+.+|.+++
T Consensus       351 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  419 (438)
T 3o7q_A          351 LIALTLCSAFMSIQYPTIFSLGIKNLGQD----------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA  419 (438)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHSSCGGG----------HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccc----------ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            34556778888888899888888887732          222223333 456999999999999999998 999999887


Q ss_pred             HHHHHHHHH
Q 029822          117 AIMLLSALC  125 (187)
Q Consensus       117 v~~~val~~  125 (187)
                      ++.++.++.
T Consensus       420 ~~~~~~~~~  428 (438)
T 3o7q_A          420 LCFAVIFIF  428 (438)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=93.41  E-value=0.032  Score=46.06  Aligned_cols=77  Identities=12%  Similarity=-0.003  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF  112 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF  112 (187)
                      +.+.++++..+.++|.|...+...+...|.++          +.+.+.+..+....++|..+++.+..++.++.+|...|
T Consensus       290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p----------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~  359 (375)
T 2gfp_A          290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP----------FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGL  359 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH----------HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC----------cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHH
Confidence            45566677888899999999999999998875          24677888888999999999999999998888888888


Q ss_pred             hhhHHHH
Q 029822          113 GIPAAIM  119 (187)
Q Consensus       113 ~i~~v~~  119 (187)
                      .+.++++
T Consensus       360 ~~~~~~~  366 (375)
T 2gfp_A          360 LMTLMGL  366 (375)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7765544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=92.54  E-value=0.15  Score=43.54  Aligned_cols=83  Identities=14%  Similarity=0.103  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheec------
Q 029822           32 SQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDN------  105 (187)
Q Consensus        32 ~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~------  105 (187)
                      .....++++..+.++|.|+.-+....+.+|...+         +.|.....++.+++.+|.+++..+...+...      
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~---------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  194 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA---------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWL  194 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG---------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH---------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccc
Confidence            3577899999999999999999999999998764         4567777788888888888887665554332      


Q ss_pred             --cCcceehhhhHHHHHHHH
Q 029822          106 --LGWKVGFGIPAAIMLLSA  123 (187)
Q Consensus       106 --~gw~~gF~i~~v~~~val  123 (187)
                        .+|++.+.+..+..++.+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~  214 (491)
T 4gc0_A          195 NTDGWRYMFASECIPALLFL  214 (491)
T ss_dssp             TTTHHHHHHHTTHHHHHHHH
T ss_pred             cchhhHHHhhhhhhhhhhhh
Confidence              356766766666544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=89.49  E-value=0.86  Score=38.67  Aligned_cols=82  Identities=10%  Similarity=0.044  Sum_probs=54.8

Q ss_pred             cccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheec------cCcceehhhhHHHHHHHHH
Q 029822           51 IRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDN------LGWKVGFGIPAAIMLLSAL  124 (187)
Q Consensus        51 ~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~------~gw~~gF~i~~v~~~val~  124 (187)
                      .-|....+.+|.|..         +.|.....+.+...++|++++..+.+++.+.      .++...|.+-++..+++.+
T Consensus       387 ~~~~~~~~~~E~fPt---------~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i  457 (491)
T 4gc0_A          387 WGPVCWVLLSEIFPN---------AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL  457 (491)
T ss_dssp             TTHHHHHHHHHSSCT---------TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            345666788899875         3567788888889999999998888887653      4566667666655555544


Q ss_pred             HHHhcCCceeecCCCCChhHHH
Q 029822          125 CFFLASPFYVKSKANTSLLSGL  146 (187)
Q Consensus       125 ~f~~g~~~y~~~~p~gs~l~~~  146 (187)
                      ..++     .-+|.+|.++.++
T Consensus       458 ~~~~-----~~PETkg~tLeei  474 (491)
T 4gc0_A          458 FMWK-----FVPETKGKTLEEL  474 (491)
T ss_dssp             HHHH-----HCCCCTTCCHHHH
T ss_pred             HHHh-----eecCCCCCCHHHH
Confidence            3221     1235666666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.86
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.74
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.67

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00048  Score=54.04  Aligned_cols=86  Identities=8%  Similarity=0.042  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHH-HhhHhHHHHhhhhhhheeccCccee
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYV-SVSASSMVAVTLIVYIQDNLGWKVG  111 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~-~invG~li~~~~~~~i~~~~gw~~g  111 (187)
                      +...+++...+.+++.|...+...++..|.+++         +.+.+.+..++. +.++|..+++.+.+++.|+.||+..
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~  381 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV---------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA  381 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG---------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence            345667777788899999999999999999874         346677777654 5679999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHH
Q 029822          112 FGIPAAIMLLSALCFF  127 (187)
Q Consensus       112 F~i~~v~~~val~~f~  127 (187)
                      |.+.++..++..++.+
T Consensus       382 ~~~~~~~~~~~~~~~~  397 (417)
T d1pv7a_         382 YLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9988877666555533

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0013  Score=53.09  Aligned_cols=86  Identities=10%  Similarity=0.087  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhee-ccCcceeh
Q 029822           34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQD-NLGWKVGF  112 (187)
Q Consensus        34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~-~~gw~~gF  112 (187)
                      ...+++...+.++|.|..-+...++.+|.+++         ++|...+.++..+.++|..+++....++.. ..+|+..|
T Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---------~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~  186 (447)
T d1pw4a_         116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ---------KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL  186 (447)
T ss_dssp             SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT---------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCT
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh---------hcccccccccccccchhhhhhhhhhhhHhhhhhcccccc
Confidence            45667777888899999999999999999874         357788899999999999999877776544 45899999


Q ss_pred             hhhHHHHHH-HHHHHHh
Q 029822          113 GIPAAIMLL-SALCFFL  128 (187)
Q Consensus       113 ~i~~v~~~v-al~~f~~  128 (187)
                      .+.++..++ +++.+..
T Consensus       187 ~~~~~~~~~~~~~~~~~  203 (447)
T d1pw4a_         187 YMPAFCAILVALFAFAM  203 (447)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHh
Confidence            988876544 3444433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.002  Score=51.90  Aligned_cols=84  Identities=15%  Similarity=0.087  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhH-hHHHHhhhhhhheeccCccee
Q 029822           33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSA-SSMVAVTLIVYIQDNLGWKVG  111 (187)
Q Consensus        33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~inv-G~li~~~~~~~i~~~~gw~~g  111 (187)
                      +..+..+.+.+++++.++.-+.......|.+++         +.+.....+.++..++ |.++++.+.+++.++.||...
T Consensus       342 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~---------~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~  412 (447)
T d1pw4a_         342 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPK---------KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG  412 (447)
T ss_dssp             CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT---------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            445666677778888888888888888888774         3567778888888887 456678889999999999999


Q ss_pred             hhhhHHHHHHHHHH
Q 029822          112 FGIPAAIMLLSALC  125 (187)
Q Consensus       112 F~i~~v~~~val~~  125 (187)
                      |.+.+++.+++.+.
T Consensus       413 ~~~~~~~~~~~~~~  426 (447)
T d1pw4a_         413 FMVMIGGSILAVIL  426 (447)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            98887766665554