Citrus Sinensis ID: 029845

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MAGMMSSSLRRSITPTNSLSLLPKPHLLLQSFYSSKSSPAFSSSPETLNDENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYHEDLL
Secondary Structure (PSIPRED)
ccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccEEccccccccEEEHHHHHHHHHHHcccccEEEEEEEEEcccccEEEEEEEEEEEEccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccccccccccccccccccccHccccccccccccccccccccccccccccHHHHHHHHHcccccHHHEEEcccccccccEccHHHHHHHHHHccccccEEEEEEEEcccccEEEEEEEEEEEccccHEEEHccccccccccccccHHHHHHHHHHHHHHHHHcccEEEcccccc
Coil and Loop (DISEMBL)
magmmssslrrsitptnslsllpkphlllqsfyssksspafssspetlndendavptsgisrPLSEILKELNKNVPNSLIKIRVedgfsmkyiPWHIVNRIMnlhapewsgevrnitysadgkTVSVVYRVTIYGTDAEIFREStgtalvdeqgygDAVQKAEAMAFRRACARFGlglhlyhedll
Flexible Loop (DISEMBL)
magmmssslrrsitptnslsllPKPHLLLQSFYSSKSSPAFSsspetlndendavpTSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNItysadgktvSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLhlyhedll
Low Complexity Region (SEG)
MAGMMSSSLRRSITPTNslsllpkphlllQsfyssksspafssspETLNDENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYHEDLL
Disordered region (IsUnstruct)
*********************************************************************ELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYH****
Disordered Region (DISOPRED)
**********************************************************GISRPLSEILKELNKNVP**********GFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYHED**
Disordered Region (DISEMBL)
************ITPTNSLSLLPKPHLLLQSFYS****************ENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYHEDLL
Disordered Region (DISPRO)
*****************SL*L**********************************PTSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYHE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGMMSSSLRRSITPTNSLSLLPKPHLLLQSFYSSKSSPAFSSSPETLNDENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYHEDLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
225459957	188	PREDICTED: uncharacterized protein LOC10	0.725	0.718	0.851	7e-67
255539424	183	conserved hypothetical protein [Ricinus	0.924	0.939	0.696	2e-64
224127742	146	predicted protein [Populus trichocarpa]	0.736	0.938	0.817	8e-64
15224018	176	cobalt ion binding protein [Arabidopsis	0.747	0.789	0.811	8e-64
357470733	186	SnRK1-interacting protein [Medicago trun	0.801	0.801	0.753	1e-61
388519199	175	unknown [Lotus japonicus]	0.720	0.765	0.785	2e-58
115441385	188	Os01g0876900 [Oryza sativa Japonica Grou	0.860	0.851	0.618	3e-58
9367245	188	SnRK1-interacting protein 1 [Hordeum vul	0.854	0.845	0.627	3e-58
356531724	174	PREDICTED: uncharacterized protein LOC10	0.698	0.747	0.796	9e-58
294463247	184	unknown [Picea sitchensis]	0.779	0.788	0.710	7e-57

>gi|225459957|ref|XP_002266658.1| PREDICTED: uncharacterized protein LOC100261996 [Vitis vinifera] gi|297734753|emb|CBI16987.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (659), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 115/135 (85%), Positives = 130/135 (96%)

Query: 52  NDAVPTSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSG 111
           +D VPTSGISRPLSEILKEL+K VP++L+K+R EDGFS+KYIPWHIVNRIMNLHAPEWSG
Sbjct: 54  DDVVPTSGISRPLSEILKELSKKVPDTLVKVRTEDGFSIKYIPWHIVNRIMNLHAPEWSG 113

Query: 112 EVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRAC 171
           EVR+ITYSADGK+VSVVYRVT+YGTDAE++RESTGTALV++ GYGD VQKAEAMAFRRAC
Sbjct: 114 EVRSITYSADGKSVSVVYRVTLYGTDAEMYRESTGTALVEDTGYGDPVQKAEAMAFRRAC 173

Query: 172 ARFGLGLHLYHEDLL 186
           ARFGLGLHLYHED+L
Sbjct: 174 ARFGLGLHLYHEDML 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539424|ref|XP_002510777.1| conserved hypothetical protein [Ricinus communis] gi|223551478|gb|EEF52964.1| conserved hypothetical protein [Ricinus communis]

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/178 (69%), Positives = 145/178 (81%), Gaps = 6/178 (3%)

Query: 10  RRSITPTNSLSLLPKPHLLLQSFYSSKSSPAFSSSPETLNDENDA-VPTSGISRPLSEIL 68
           RRS++  + L +    +     +YS   S AF  + E  +  ND  +PTSGISRPLSEIL
Sbjct: 11  RRSLSDASPLKMKQSSYY----YYSKFLSNAFGET-ELESSRNDIDIPTSGISRPLSEIL 65

Query: 69  KELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSADGKTVSVV 128
           K+L+K VP+SL++ R+EDG S+KYIPWHIVNRIMNLHAPEWSGEVRNITYS DGK+VSVV
Sbjct: 66  KQLHKKVPDSLVRQRLEDGCSVKYIPWHIVNRIMNLHAPEWSGEVRNITYSPDGKSVSVV 125

Query: 129 YRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYHEDLL 186
           YRVT+YGTDAEI+RES+GTA VD  GYGDAVQKAEAMAFRRACARFGLGLHLYHED+L
Sbjct: 126 YRVTLYGTDAEIYRESSGTASVDHSGYGDAVQKAEAMAFRRACARFGLGLHLYHEDML 183

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127742|ref|XP_002329166.1| predicted protein [Populus trichocarpa] gi|222870947|gb|EEF08078.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (633), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 112/137 (81%), Positives = 128/137 (93%)

Query: 49  NDENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPE 108
           N END+VPTSGISRPLSEILKELNK VP++L+  RV++GFS+KY+PWH+VNRIMNLHAPE
Sbjct: 10  NAENDSVPTSGISRPLSEILKELNKKVPDTLVSQRVDNGFSIKYVPWHLVNRIMNLHAPE 69

Query: 109 WSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFR 168
           WSGEVRNITYS D K+VSVVYRVT+YGTDAE++RESTGTA +DE G+GD VQKAEAMAFR
Sbjct: 70  WSGEVRNITYSPDSKSVSVVYRVTLYGTDAELYRESTGTAALDEIGFGDPVQKAEAMAFR 129

Query: 169 RACARFGLGLHLYHEDL 185
           RACARFGLGLHLYHED+
Sbjct: 130 RACARFGLGLHLYHEDM 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224018|ref|NP_177287.1| cobalt ion binding protein [Arabidopsis thaliana] gi|30698791|ref|NP_849876.1| cobalt ion binding protein [Arabidopsis thaliana] gi|12323832|gb|AAG51886.1|AC016162_7 hypothetical protein; 63020-64147 [Arabidopsis thaliana] gi|22135986|gb|AAM91575.1| unknown protein [Arabidopsis thaliana] gi|23198344|gb|AAN15699.1| unknown protein [Arabidopsis thaliana] gi|332197065|gb|AEE35186.1| cobalt ion binding protein [Arabidopsis thaliana] gi|332197066|gb|AEE35187.1| cobalt ion binding protein [Arabidopsis thaliana]

 Score =  248 bits (633), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 116/143 (81%), Positives = 128/143 (89%), Gaps = 4/143 (2%)

Query: 44  SPETLNDENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMN 103
           S ET ND    VPTSGISRPL+EILKELNK VP+S+I+ RVEDG S+KYIPWHIVNRIMN
Sbjct: 38  STETEND----VPTSGISRPLAEILKELNKKVPDSVIRTRVEDGCSIKYIPWHIVNRIMN 93

Query: 104 LHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAE 163
           +HAPEWSGEVR++TYS DG TV+V YRVT+YGTDAEIFRESTGT  VD++GYGDAVQKAE
Sbjct: 94  MHAPEWSGEVRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAE 153

Query: 164 AMAFRRACARFGLGLHLYHEDLL 186
           AMAFRRACARFGLGLHLYHED L
Sbjct: 154 AMAFRRACARFGLGLHLYHEDAL 176

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470733|ref|XP_003605651.1| SnRK1-interacting protein [Medicago truncatula] gi|355506706|gb|AES87848.1| SnRK1-interacting protein [Medicago truncatula]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/150 (75%), Positives = 124/150 (82%), Gaps = 1/150 (0%)

Query: 36  KSSPAFSSSPETLNDENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVE-DGFSMKYIP 94
           K +   SSS        D VPTSGI RPLSEILKELNK VP+SL+K RVE DGF ++YIP
Sbjct: 35  KHAKTTSSSAADFEKVADDVPTSGICRPLSEILKELNKKVPDSLVKTRVEKDGFHIRYIP 94

Query: 95  WHIVNRIMNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQG 154
           WH VNR++NLHAPEWSGEVRNI YSAD K+VSVVYRVT+YGTDAEIFRESTGTA  D+  
Sbjct: 95  WHTVNRVLNLHAPEWSGEVRNIAYSADAKSVSVVYRVTLYGTDAEIFRESTGTASTDDTN 154

Query: 155 YGDAVQKAEAMAFRRACARFGLGLHLYHED 184
           YGD VQKAEAMAFRRACARFGLGLHLYHE+
Sbjct: 155 YGDPVQKAEAMAFRRACARFGLGLHLYHEE 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519199|gb|AFK47661.1| unknown [Lotus japonicus]

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/135 (78%), Positives = 121/135 (89%), Gaps = 1/135 (0%)

Query: 51  ENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVE-DGFSMKYIPWHIVNRIMNLHAPEW 109
           E+ ++P+SGI RPLS ILKELNK VP+SL+K R+E DG  ++YIPWH+VNRI+NLHAPEW
Sbjct: 39  EDASIPSSGICRPLSAILKELNKKVPDSLVKTRLENDGTPIRYIPWHVVNRILNLHAPEW 98

Query: 110 SGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRR 169
           SGEVRNI+YSAD K+VSVVYRVT+YGTDAEIFRESTGTA V +  YGD VQKAEAMAFRR
Sbjct: 99  SGEVRNISYSADAKSVSVVYRVTLYGTDAEIFRESTGTASVSDTSYGDPVQKAEAMAFRR 158

Query: 170 ACARFGLGLHLYHED 184
           ACARFGLGLHLYHED
Sbjct: 159 ACARFGLGLHLYHED 173

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441385|ref|NP_001044972.1| Os01g0876900 [Oryza sativa Japonica Group] gi|20804775|dbj|BAB92460.1| putative SnRK1-interacting protein 1 [Oryza sativa Japonica Group] gi|22202660|dbj|BAC07318.1| putative SnRK1-interacting protein 1 [Oryza sativa Japonica Group] gi|113534503|dbj|BAF06886.1| Os01g0876900 [Oryza sativa Japonica Group] gi|125572839|gb|EAZ14354.1| hypothetical protein OsJ_04274 [Oryza sativa Japonica Group]

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 130/173 (75%), Gaps = 13/173 (7%)

Query: 21  LLPKPHLLLQSFYSSKSSPAFSSSPETLNDEND--------AVPTSGISRPLSEILKELN 72
           LL +P             PAF S      DE+D          PT GIS+PL+E+L+EL 
Sbjct: 20  LLARPFAAKARASRRPQEPAFPS-----EDEDDFAGGEVAAPAPTEGISKPLAEVLRELG 74

Query: 73  KNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSADGKTVSVVYRVT 132
           K VP +L+K RVEDGFS+KYIPWHIVN+I+N+HAPEWSGEVR+I YS+DGK+VSV+YRVT
Sbjct: 75  KRVPEALVKTRVEDGFSLKYIPWHIVNKILNIHAPEWSGEVRSIVYSSDGKSVSVIYRVT 134

Query: 133 IYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYHEDL 185
           ++GTDAEI+RE+TGT+  D+ GYGD VQKAEAMAFRRAC R GLGLHLYHED+
Sbjct: 135 LHGTDAEIYREATGTSSADDTGYGDPVQKAEAMAFRRACTRLGLGLHLYHEDM 187

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9367245|emb|CAB97356.1| SnRK1-interacting protein 1 [Hordeum vulgare subsp. vulgare]

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 132/169 (78%), Gaps = 10/169 (5%)

Query: 27  LLLQSFYSSKSSPAFSSSPETLNDEND---------AVPTSGISRPLSEILKELNKNVPN 77
           LL + F +   +      PE L++E+D          +PT GIS+PL+ ILKEL K VP 
Sbjct: 19  LLARPFAAKARASQRPKEPEPLSEEDDDFTSGGEAAPIPTEGISKPLAGILKELGKKVPE 78

Query: 78  SLIKIRVED-GFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGT 136
           SL+K R+ED GF++KYIPWH+ N+++N HAPEWSGEVRNI YS+DGK+VSVVYRVT+YGT
Sbjct: 79  SLLKTRLEDNGFTLKYIPWHLANKVLNAHAPEWSGEVRNIVYSSDGKSVSVVYRVTLYGT 138

Query: 137 DAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYHEDL 185
           DAEI+RE+TGTA V+++GYGD VQKAE MAFRRACAR GLGLHLYHED+
Sbjct: 139 DAEIYREATGTASVEDKGYGDPVQKAEGMAFRRACARLGLGLHLYHEDM 187

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531724|ref|XP_003534426.1| PREDICTED: uncharacterized protein LOC100782719 [Glycine max]

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 106/133 (79%), Positives = 119/133 (89%), Gaps = 3/133 (2%)

Query: 55  VPTSGISRPLSEILKELNKNVPNSLIKIRVE---DGFSMKYIPWHIVNRIMNLHAPEWSG 111
           VP+S ISRPLSEILKELNK VP+SL+K R++   D   +++IPWH+VNRI+NLHAPEWSG
Sbjct: 40  VPSSRISRPLSEILKELNKKVPDSLVKTRLQKDQDASPIRFIPWHVVNRILNLHAPEWSG 99

Query: 112 EVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRAC 171
           EVRNITYSAD K+VSVVYRVT+YGTDAEIFRESTGTA VD+  YGD VQKAEAMAFRRAC
Sbjct: 100 EVRNITYSADAKSVSVVYRVTLYGTDAEIFRESTGTASVDDTSYGDPVQKAEAMAFRRAC 159

Query: 172 ARFGLGLHLYHED 184
           ARFGLGLHLYHED
Sbjct: 160 ARFGLGLHLYHED 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294463247|gb|ADE77159.1| unknown [Picea sitchensis]

 Score =  225 bits (573), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 103/145 (71%), Positives = 122/145 (84%)

Query: 42  SSSPETLNDENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRI 101
           S +P   + E   +P+S ISRPL++IL+ELN+ VP+ L+KIRVE+GF+ KY+PWHIVNRI
Sbjct: 40  SGAPGETDSEIPEIPSSTISRPLADILRELNRRVPDRLVKIRVEEGFTTKYVPWHIVNRI 99

Query: 102 MNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQK 161
           MNLHA EWSGEVR+ITYS DG +VSVVYRVTIYG DAEI RESTG+A   +  +GD VQK
Sbjct: 100 MNLHAQEWSGEVRSITYSNDGNSVSVVYRVTIYGVDAEIHRESTGSASTGDTNFGDPVQK 159

Query: 162 AEAMAFRRACARFGLGLHLYHEDLL 186
           AEAMAFRRACARFGLGLHLYHED+L
Sbjct: 160 AEAMAFRRACARFGLGLHLYHEDIL 184

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2032313	176	RAD52-1 "radiation sensitive 5	0.725	0.767	0.838	3.5e-59
TAIR|locus:2160967	199	RAD52-2 "AT5G47870" [Arabidops	0.677	0.633	0.492	7.1e-29

TAIR|locus:2032313 RAD52-1 "radiation sensitive 51-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 114/136 (83%), Positives = 126/136 (92%)

Query:    51 ENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWS 110
             END VPTSGISRPL+EILKELNK VP+S+I+ RVEDG S+KYIPWHIVNRIMN+HAPEWS
Sbjct:    42 END-VPTSGISRPLAEILKELNKKVPDSVIRTRVEDGCSIKYIPWHIVNRIMNMHAPEWS 100

Query:   111 GEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRA 170
             GEVR++TYS DG TV+V YRVT+YGTDAEIFRESTGT  VD++GYGDAVQKAEAMAFRRA
Sbjct:   101 GEVRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRA 160

Query:   171 CARFGLGLHLYHEDLL 186
             CARFGLGLHLYHED L
Sbjct:   161 CARFGLGLHLYHEDAL 176

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=IMP

TAIR|locus:2160967 RAD52-2 "AT5G47870" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 64/130 (49%), Positives = 89/130 (68%)

Query:    57 TSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMK---YIPWHIVNRIMNLHAPEWSGEV 113
             +S I+RPL EIL++LNK +P++++K       S     +IPW+  NR+++ +AP W GEV
Sbjct:    71 SSSITRPLIEILRDLNKKIPDNIVKSHDPPSTSAATSGFIPWYHANRMLSFYAPGWCGEV 130

Query:   114 RNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACAR 173
             R++ +S +G  V+VVYR+TI G+D E  RESTGT    +    D V  AE +AF RACAR
Sbjct:   131 RDVIFSENGN-VTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAEEIAFCRACAR 189

Query:   174 FGLGLHLYHE 183
             FGLGL+LYHE
Sbjct:   190 FGLGLYLYHE 199


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      186       159   0.00091  106 3  11 22  0.38    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  140 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.16u 0.16s 14.32t   Elapsed:  00:00:00
  Total cpu time:  14.16u 0.16s 14.32t   Elapsed:  00:00:00
  Start:  Tue May 21 00:42:23 2013   End:  Tue May 21 00:42:23 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
PF04098	154	Rad52_Rad22: Rad52/22 family double-strand break r	99.77
COG4712	234	Uncharacterized protein conserved in bacteria [Fun	99.75
PF06378	164	DUF1071: Protein of unknown function (DUF1071); In	99.51
TIGR00607	161	rad52 recombination protein rad52. This family is	99.06
PF06420	171	Mgm101p: Mitochondrial genome maintenance MGM101;	98.56
PHA02448	192	hypothetical protein	98.35
COG5055	375	RAD52 Recombination DNA repair protein (RAD52 path	98.04
KOG4141	222	consensus DNA repair and recombination protein RAD	96.19
PF03147	94	FDX-ACB: Ferredoxin-fold anticodon binding domain;	82.72

>PF04098 Rad52_Rad22: Rad52/22 family double-strand break repair protein; InterPro: IPR007232 The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways

Probab=99.77  E-value=1.5e-18  Score=138.12  Aligned_cols=118  Identities=26%  Similarity=0.423  Sum_probs=81.7

Q ss_pred             HHHHHHHHcCCCCCCcccccccCC--cccccchhHHHHhh-hhhcCC-ccccceeeEEE--ee-CCC------EEEEEEE
Q 029845           64 LSEILKELNKNVPNSLIKIRVEDG--FSMKYIPWHIVNRI-MNLHAP-EWSGEVRNITY--SA-DGK------TVSVVYR  130 (186)
Q Consensus        64 LsEIL~~L~kPfP~~~Ik~R~~~g--~~l~yIpW~~vnR~-L~~~aP-gW~~EVr~V~y--s~-~G~------~VtV~~R  130 (186)
                      +.+|.+.|++|||+..|+||...+  ..+.||+.+.+..+ ..++++ +|+.||.++..  .+ ++.      .+++.+|
T Consensus         2 ~~~i~~~L~~~~~~~~i~~R~~~~~~~~~~yl~~~~vi~~aN~vfGfngWs~~i~~~~~~~~~~~~~~~~~~~~~~~~vr   81 (154)
T PF04098_consen    2 IGEIQEKLEKPLPPEEISWRPGSGGKSKLPYLESRKVIELANEVFGFNGWSSEIISLEQDFVEEEPGEGKYSVGYSAIVR   81 (154)
T ss_dssp             HHHHHHHHH--B-TTTEEEEE-TTS--EEEEE-HHHHHHHHHHHH-TTTEEEEEEEEEEEEEEESSS--SEEEEEEEEEE
T ss_pred             HHHHHHHHhCccCHHHhEecccCCCCccccccCHHHHHHHHHHHhCcCCCceEEEeeEeeeeeccCCceeEEEEEEEEEE
Confidence            578999999999999999999753  47999999886544 455556 79999987765  22 122      2455555


Q ss_pred             EEEEecCceeEeecccccccCCC-----CCCchHHHHHHHHHHHHHHHhc--cceeccCCC
Q 029845          131 VTIYGTDAEIFRESTGTALVDEQ-----GYGDAVQKAEAMAFRRACARFG--LGLHLYHED  184 (186)
Q Consensus       131 LTI~G~DgeitREatGta~~~d~-----~~gDpv~aAes~AFrRACArFG--LGlYLY~ed  184 (186)
                      |||  .||+ +||++|.......     .+.++.+.|.++||||||..||  ||+|||+.+
T Consensus        82 itL--kdg~-~~e~~G~g~~~~~~~k~~a~~~akK~AvtdAlKRA~~~fG~~lG~~Lyd~~  139 (154)
T PF04098_consen   82 ITL--KDGT-YREDIGYGWSENMDGKGMAIEKAKKGAVTDALKRALRSFGNQLGRYLYDKE  139 (154)
T ss_dssp             EEE--TTS--EEEEEEEEEEESES-HHHHHHHHHHHHHHHHHHHHHHTT-GGGTTGGG-HH
T ss_pred             EEE--eCCc-eeeecceEEEecCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            555  4564 7899988754421     2567899999999999999999  999999853

This family includes proteins related to Rad52. These proteins contain two helix-hairpin-helix motifs [].; GO: 0006281 DNA repair, 0006310 DNA recombination; PDB: 1KN0_I 1H2I_U.

>COG4712 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.75  E-value=2.2e-18  Score=147.50  Aligned_cols=107  Identities=20%  Similarity=0.297  Sum_probs=92.6

Q ss_pred             HHHHHHHHcCCCCCCcccccccC-----C--cccccchhHHHHhhhhhcCC--ccccceeeEEEeeCCCEEEEEEEEEEE
Q 029845           64 LSEILKELNKNVPNSLIKIRVED-----G--FSMKYIPWHIVNRIMNLHAP--EWSGEVRNITYSADGKTVSVVYRVTIY  134 (186)
Q Consensus        64 LsEIL~~L~kPfP~~~Ik~R~~~-----g--~~l~yIpW~~vnR~L~~~aP--gW~~EVr~V~ys~~G~~VtV~~RLTI~  134 (186)
                      |+|.+..|++|+|++.|.||++.     +  .-++|++.+.++++|+.++|  ||..|..-|   +++.--+|..+++..
T Consensus         3 lsdvq~alq~pl~a~~V~wrv~~f~a~~~~allLAy~DaRavq~rlDevfgv~gW~~E~~~v---~G~~~ctV~v~~~d~   79 (234)
T COG4712           3 LSDVQMALQRPLKASEVEWRVQSFKAKSGCALLLAYKDARAVQKRLDEVFGVLGWEREHQLV---NGNLFCTVRVYDEDM   79 (234)
T ss_pred             HHHHHHHhhCCCCcceeEEeeeccccCCceeeeehhhhhHHHHHHHHHhcCcccchhheeec---cCCeeeeEEEEeeee
Confidence            78999999999999999999941     2  45789999999999999999  799998888   566656677777776


Q ss_pred             ecCceeEeecccccccCCCCCCchHHHHHHHHHHHHHHHhccceeccC
Q 029845          135 GTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYH  182 (186)
Q Consensus       135 G~DgeitREatGta~~~d~~~gDpv~aAes~AFrRACArFGLGlYLY~  182 (186)
                      +    +||+++||++..     -+++.+.|++|||||.+||+|||||+
T Consensus        80 w----VTk~D~ge~~~~-----ea~Kg~aSdsmKRaavqfGIGRyLYd  118 (234)
T COG4712          80 W----VTKQDVGEESNT-----EAEKGQASDSMKRAAVQFGIGRYLYD  118 (234)
T ss_pred             e----eeeccccccchh-----HHHhcccchHHHHHHhhhccchhhhc
Confidence            6    899999998642     26899999999999999999999996

>PF06378 DUF1071: Protein of unknown function (DUF1071); InterPro: IPR009425 This entry is represented by Bacteriophage bIL285, Orf14

Probab=99.51  E-value=5.7e-14  Score=116.04  Aligned_cols=103  Identities=24%  Similarity=0.329  Sum_probs=77.7

Q ss_pred             ccccCCcccccchhHHHHhhhhhcCCccccceeeE------------EEeeCCCEEEEEEEEEEEecCceeEeec---cc
Q 029845           82 IRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNI------------TYSADGKTVSVVYRVTIYGTDAEIFRES---TG  146 (186)
Q Consensus        82 ~R~~~g~~l~yIpW~~vnR~L~~~aPgW~~EVr~V------------~ys~~G~~VtV~~RLTI~G~DgeitREa---tG  146 (186)
                      .+++....+.|+.|+.+-.+|.-++|+|+++|..-            .|-.++....|..+|||.|...+.+-.-   ..
T Consensus        14 ~~vekk~~l~YLSWA~Aw~~lk~~~P~at~~i~~f~~~~~~~~~~~~p~~~t~~g~~V~v~vti~g~t~~~~lPVMD~rN   93 (164)
T PF06378_consen   14 DKVEKKNGLSYLSWAWAWALLKKIYPDATYEIVEFPEYDITGLPYGVPYLDTNTGYMVEVSVTIEGQTYTMWLPVMDGRN   93 (164)
T ss_pred             hhhheeCCCCeehHHHHHHHHHHhCCCCeEEEEECCCCCCCCCccccceecCCceEEEEEEEEECCEEEEEEEeecCCCC
Confidence            33333467899999999999999999999988652            1444555678999999999655554422   11


Q ss_pred             ccccCCCCCCchHHHHHHHHHHHHHHHhccceeccCCCCC
Q 029845          147 TALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYHEDLL  186 (186)
Q Consensus       147 ta~~~d~~~gDpv~aAes~AFrRACArFGLGlYLY~ed~l  186 (186)
                      .+ + +...+-.+.+|..+||.+|||.||||||||..++|
T Consensus        94 k~-i-~~p~~~dINka~~RclVKalA~~GLGLyiYaGEDl  131 (164)
T PF06378_consen   94 KA-I-EKPTAFDINKAIMRCLVKALAMFGLGLYIYAGEDL  131 (164)
T ss_pred             Cc-c-cCcchhhhHHHHHHHHHHHHHHhCccceeeccCcC
Confidence            11 2 22335579999999999999999999999998876

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical bacterial and phage proteins of unknown function.

>TIGR00607 rad52 recombination protein rad52

Probab=99.06  E-value=3.7e-10  Score=93.54  Aligned_cols=116  Identities=28%  Similarity=0.413  Sum_probs=87.0

Q ss_pred             HHHHHHcCCCCCCcccccccC-CcccccchhHHHHhhhhhcCC--ccccceeeEEE--ee--CCC-E--EEEEEEEEEEe
Q 029845           66 EILKELNKNVPNSLIKIRVED-GFSMKYIPWHIVNRIMNLHAP--EWSGEVRNITY--SA--DGK-T--VSVVYRVTIYG  135 (186)
Q Consensus        66 EIL~~L~kPfP~~~Ik~R~~~-g~~l~yIpW~~vnR~L~~~aP--gW~~EVr~V~y--s~--~G~-~--VtV~~RLTI~G  135 (186)
                      +|+..|++++++..|+.|+-+ |.++.||+.+.+..+-|-+=.  ||+-+|.++..  .+  .|+ +  ++++.|||+  
T Consensus         1 ~iq~~l~~~lgpe~is~R~g~gg~kv~Yieg~k~i~lANeiFGFnGWSs~I~~~~vd~~de~~~k~~vg~saiVRVtL--   78 (161)
T TIGR00607         1 AIQKALRQKLGPEYISSRSGGGGQKVCYIEGWKVINLANEIFGYNGWSHSITQQNVDFVDENNGKFSVGVCAIVRVTL--   78 (161)
T ss_pred             ChhHHhhcccCchheeeccCCCCceEEeccHHHHHHHHHHhcCCCCceeeeeecccceecccCCcEEEEEEEEEEEEE--
Confidence            378899999999999999965 789999999987666665555  89998876642  11  122 2  445555555  


Q ss_pred             cCceeEeecccccccCC-CCC----CchHHHHHHHHHHHHHHHhc--cceeccCCC
Q 029845          136 TDAEIFRESTGTALVDE-QGY----GDAVQKAEAMAFRRACARFG--LGLHLYHED  184 (186)
Q Consensus       136 ~DgeitREatGta~~~d-~~~----gDpv~aAes~AFrRACArFG--LGlYLY~ed  184 (186)
                      .|| .+||++|.....+ .+-    ..+-+.|..+|+|||+-.||  ||.-||+.+
T Consensus        79 kDG-t~~EdiG~G~~~n~~~K~~A~ekAKKeAvTDAlKRAlr~FGn~lGN~lydk~  133 (161)
T TIGR00607        79 KDG-SYHEDVGYGVSENLRSKALAFEKAKKEAVTDALKRALRNFGNALGNCLYDKD  133 (161)
T ss_pred             cCC-cEeecccceeeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhccHH
Confidence            578 6899999875542 232    34567789999999999999  899999875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06420 Mgm101p: Mitochondrial genome maintenance MGM101; InterPro: IPR009446 The mgm101 gene was identified as essential for maintenance of the mitochondrial genome in Saccharomyces cerevisiae []

Probab=98.56  E-value=5.7e-07  Score=75.40  Aligned_cols=112  Identities=24%  Similarity=0.391  Sum_probs=87.7

Q ss_pred             HHHHHHHcCCCCCCcccccccCCcccccchhHHHHhhhh-hcCC-ccccceeeEEEeeCCCEEEEEEEEEEEecCceeEe
Q 029845           65 SEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMN-LHAP-EWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFR  142 (186)
Q Consensus        65 sEIL~~L~kPfP~~~Ik~R~~~g~~l~yIpW~~vnR~L~-~~aP-gW~~EVr~V~ys~~G~~VtV~~RLTI~G~DgeitR  142 (186)
                      .|+.+.|.+|+.+..|+.|+ ||  +-|+|+-.+.|+|| +++| ||.--=|..... .++.|+=.|-|-.+|   .+.=
T Consensus        17 ~e~~~~L~~pl~~~DiEIKP-DG--liYLPEikYRRiLN~AFGpGgWgL~Prg~~~v-~~k~v~ReyaLic~G---r~Vs   89 (171)
T PF06420_consen   17 KEVADILLAPLDPEDIEIKP-DG--LIYLPEIKYRRILNKAFGPGGWGLVPRGETIV-TGKIVTREYALICHG---RLVS   89 (171)
T ss_pred             HHHHHHHhCCCChhceeECC-Cc--eEEchHHHHHHHHHHhcCCCceeeeecCCcee-cCceEEEEEEEEEcC---EEEE
Confidence            37888899999999999976 45  47999999999998 5679 697322222221 356677777777777   4667


Q ss_pred             ecccccc-cCCCCCCchHHHHHHHHHHHHHHHhccceeccCC
Q 029845          143 ESTGTAL-VDEQGYGDAVQKAEAMAFRRACARFGLGLHLYHE  183 (186)
Q Consensus       143 EatGta~-~~d~~~gDpv~aAes~AFrRACArFGLGlYLY~e  183 (186)
                      ++.|+-. .+..+.+++.+.|.+.||.|||.-.|++-.||+.
T Consensus        90 ~a~GEq~yf~~~~i~tA~EgcKSNALmRCCKDLGIaSELWDP  131 (171)
T PF06420_consen   90 QARGEQDYFSPDSIPTATEGCKSNALMRCCKDLGIASELWDP  131 (171)
T ss_pred             EeeccccccCCCCCchHHHHHHHHHHHHHHHHcCcchhhcCh
Confidence            8889874 4566778999999999999999999999999874

Based on its DNA-binding activity, and experimental work with a temperature-sensitive mgm101 mutant, it has been proposed that the mgm101 gene product performs an essential function in the repair of oxidatively damaged mitochondrial DNA [].; GO: 0000002 mitochondrial genome maintenance, 0000262 mitochondrial chromosome

>PHA02448 hypothetical protein

Probab=98.35  E-value=1e-06  Score=73.52  Aligned_cols=117  Identities=25%  Similarity=0.306  Sum_probs=89.8

Q ss_pred             CCccHHHHHHHHcCCCCCCcccccccCCcccccchhHHHHhhhhhcCCccccceeeEE------EeeCCCEEEEEEEEEE
Q 029845           60 ISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNIT------YSADGKTVSVVYRVTI  133 (186)
Q Consensus        60 itRPLsEIL~~L~kPfP~~~Ik~R~~~g~~l~yIpW~~vnR~L~~~aPgW~~EVr~V~------ys~~G~~VtV~~RLTI  133 (186)
                      |+.|=.|=|..|++|||++-|..-++.|..+.|+--..+.-++--+-|-|+||-..+.      +..+|.   +--|||+
T Consensus         1 msepdveglaklrepfppnqigklpkggi~ld~~gh~~lt~r~l~~dplwtwep~a~~~~glp~~d~~gg---lwirlt~   77 (192)
T PHA02448          1 MSEPDVEGLAKLREPFPPNQIGKLPKGGITLDFLGHGYLTARFLDVDPLWTWEPFAVGDNGLPLLDEHGG---LWIRLTL   77 (192)
T ss_pred             CCccchhHHHHhcCCCChhhhccCCCCceeEEecchhhhhhhhcccCccccccccccCCCCCcccccCCC---eEEEEEE
Confidence            4567788999999999999999988999999999876655444446799999876653      222333   5569999


Q ss_pred             EecCceeEeecccccccCCCCCCchHHHHHHHHHHHHHHHhccceeccCCCC
Q 029845          134 YGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLGLHLYHEDL  185 (186)
Q Consensus       134 ~G~DgeitREatGta~~~d~~~gDpv~aAes~AFrRACArFGLGlYLY~ed~  185 (186)
                      -|    .||-.-|.+.-.  .-.++|+.|+.+|+|.|--|||-.|-||...+
T Consensus        78 ~g----~tr~gygd~~gk--~gpnavkeaigdalrnagmrfgaal~lw~k~d  123 (192)
T PHA02448         78 CG----VTRIGYGDAGGK--KGPNAVKEAIGDALRNAGMRFGAALDLWCKGD  123 (192)
T ss_pred             ec----cceeeccccCCC--cCchHHHHHHHHHHHhccchhhHHHHHHhcCC
Confidence            99    677655554211  12568999999999999999999999997654

>COG5055 RAD52 Recombination DNA repair protein (RAD52 pathway) [DNA replication, recombination, and repair]

Probab=98.04  E-value=1.6e-05  Score=72.75  Aligned_cols=125  Identities=30%  Similarity=0.498  Sum_probs=86.9

Q ss_pred             CCCCCCCc-cHHHHHHHHcCCCCCCccccccc-CCcccccchhHH----HHhhhhhcCCccccceeeEEE--ee---CCC
Q 029845           55 VPTSGISR-PLSEILKELNKNVPNSLIKIRVE-DGFSMKYIPWHI----VNRIMNLHAPEWSGEVRNITY--SA---DGK  123 (186)
Q Consensus        55 ~p~s~itR-PLsEIL~~L~kPfP~~~Ik~R~~-~g~~l~yIpW~~----vnR~L~~~aPgW~~EVr~V~y--s~---~G~  123 (186)
                      -|.++++- -.-.|...|.+..=+..|.-|+- ++.+++||+-..    +|++..|  .||+-||++|..  -+   +++
T Consensus        16 ~~~~afs~~r~~~lqs~L~rklgpeYis~R~G~g~~~iayIegw~~I~lANeiFGf--nGWss~I~sv~id~~ee~~e~k   93 (375)
T COG5055          16 RPASAFSVQRIGKLQSKLERKLGPEYISRRSGFGGSSIAYIEGWKAIELANEIFGF--NGWSSEIRSVEIDYCEEFEEKK   93 (375)
T ss_pred             CccchhhhhHHHHHHHHHHHHhccHhhccccCCCCCceeeechhHHHHHHHHhhCc--Cccccceeeeeeeccccccccc
Confidence            34444432 26667888888888999999986 689999998544    4555433  489999998862  11   222


Q ss_pred             -E--EEEEEEEEEEecCceeEeecccccccCCCC-----CCchHHHHHHHHHHHHHHHhc--cceeccCCC
Q 029845          124 -T--VSVVYRVTIYGTDAEIFRESTGTALVDEQG-----YGDAVQKAEAMAFRRACARFG--LGLHLYHED  184 (186)
Q Consensus       124 -~--VtV~~RLTI~G~DgeitREatGta~~~d~~-----~gDpv~aAes~AFrRACArFG--LGlYLY~ed  184 (186)
                       +  ++|..||||  .|| .+||.+|.-+.+-..     |.-.-+.|.-+|+|||...||  ||-|||+..
T Consensus        94 ~svg~saiVRVTL--KDG-ty~EdiGyGsien~r~ka~ayek~KKEavtDALKRALr~Fgnslgnc~ydk~  161 (375)
T COG5055          94 FSVGASAIVRVTL--KDG-TYREDIGYGSIENCRRKAEAYEKAKKEAVTDALKRALRNFGNSLGNCLYDKT  161 (375)
T ss_pred             eeeeeEEEEEEEe--cCC-ccccccccceeecccccHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhH
Confidence             1  344555555  456 689999987765332     334456788899999999999  899999753

>KOG4141 consensus DNA repair and recombination protein RAD52/RAD22 [Replication, recombination and repair]

Probab=96.19  E-value=0.014  Score=51.10  Aligned_cols=110  Identities=26%  Similarity=0.410  Sum_probs=74.7

Q ss_pred             HHHHHHHcCCCCCCccccccc-CCcccccchhHH----HHhhhhhcCCccccceeeEE--Eee--CCCE---EEEEEEEE
Q 029845           65 SEILKELNKNVPNSLIKIRVE-DGFSMKYIPWHI----VNRIMNLHAPEWSGEVRNIT--YSA--DGKT---VSVVYRVT  132 (186)
Q Consensus        65 sEIL~~L~kPfP~~~Ik~R~~-~g~~l~yIpW~~----vnR~L~~~aPgW~~EVr~V~--ys~--~G~~---VtV~~RLT  132 (186)
                      ..|++.|.++.=+..|.-|.- .|.++.||+-+.    +|+|..+  .||+-+|++|.  |-+  +|+.   |++..|||
T Consensus        37 ~~iqk~L~~~lgpeYiS~R~g~gg~~v~yIegw~vI~lANeiFGy--NGWs~sI~~~~vd~~d~~~~k~~vg~~a~VrVt  114 (222)
T KOG4141|consen   37 QAIQKKLRQKLGPEYISSRMGGGGQSVCYIEGWRVINLANEIFGY--NGWSSSITSVNVDFVDEEEGKFSVGVSAIVRVT  114 (222)
T ss_pred             HHHHHHHHHHhccHhhhccccCCCceeEEecchHHHHHHHHHhCc--CcccccceeeecceeccccCeEEEeEEEEEEEE
Confidence            568899999999999999995 579999999655    3455332  48999997765  222  3331   44556666


Q ss_pred             EEecCceeEeecccccccCC-----CCCCchHHHHHHHHHHHHHHHhcccee
Q 029845          133 IYGTDAEIFRESTGTALVDE-----QGYGDAVQKAEAMAFRRACARFGLGLH  179 (186)
Q Consensus       133 I~G~DgeitREatGta~~~d-----~~~gDpv~aAes~AFrRACArFGLGlY  179 (186)
                      |.  || .|||++|.-+-.+     ..+.-.-+-|..+|.|+|-..|+....
T Consensus       115 Lk--DG-tyhEDiGyG~~e~~~~r~~~~~~~~k~~~~d~~k~~l~~~~n~i~  163 (222)
T KOG4141|consen  115 LK--DG-TYHEDIGYGSAENLSSRGLCYEKAKKEAVGDALKKALRSFENTIL  163 (222)
T ss_pred             Ee--cC-cccccccccccccchhhhhhhhhhhhhhhhhhhhHHHhhcccccc
Confidence            64  45 6899999862221     111223445788999999999987653

>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs

Probab=82.72  E-value=7.8  Score=28.30  Aligned_cols=71  Identities=15%  Similarity=0.279  Sum_probs=39.2

Q ss_pred             cchhHHHHhhhhhcCCccccce--eeEEEeeCC---CEEEEEEEEEEEecCceeEeecccccccCCCCCCchHHHHHHHH
Q 029845           92 YIPWHIVNRIMNLHAPEWSGEV--RNITYSADG---KTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMA  166 (186)
Q Consensus        92 yIpW~~vnR~L~~~aPgW~~EV--r~V~ys~~G---~~VtV~~RLTI~G~DgeitREatGta~~~d~~~gDpv~aAes~A  166 (186)
                      -++|..+.+.+.-.+.++-.+|  .++ |...+   ..-++.+|+|..-.|++++.+-              +++.....
T Consensus        17 ~~~~~~i~~~i~~~~~~~l~~v~l~D~-y~~~~l~~g~kS~~~rl~~~~~~~TLt~~e--------------v~~~~~~i   81 (94)
T PF03147_consen   17 DVPFADIEEVIRSAGGPLLESVELFDV-YRGEKLPEGKKSLTYRLTYQSPDRTLTDEE--------------VNEIHDKI   81 (94)
T ss_dssp             TS-HHHHHHHHHHHHTTTEEEEEEEEE-EESTTSGTTEEEEEEEEEE--SSS---HHH--------------HHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCccceeEEEEEEE-EcCCCCCCCcEEEEEEEEEECCCCCCCHHH--------------HHHHHHHH
Confidence            4577776665555554443333  333 66532   4689999999999888774332              55555555


Q ss_pred             HHHHHHHhccc
Q 029845          167 FRRACARFGLG  177 (186)
Q Consensus       167 FrRACArFGLG  177 (186)
                      ......+||.=
T Consensus        82 ~~~l~~~~~~~   92 (94)
T PF03147_consen   82 IKALEKKLGAE   92 (94)
T ss_dssp             HHHHHHTCT-B
T ss_pred             HHHHHHHhCcE
Confidence            55556788863

Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
1h2i_A	209	RAD52, DNA repair protein RAD52 homolog; DNA-bindi	2e-14

>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} SCOP: d.50.1.3 PDB: 1kn0_A Length = 209

 Score = 67.5 bits (164), Expect = 2e-14
 Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 25/170 (14%)

Query: 42  SSSPETLNDENDAVPTSGISRP-----------LSEILKELNKNVPNSLIKIRVE-DGFS 89
            +    L   +      G S                I K L + +    I  R+   G  
Sbjct: 3   GTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQK 62

Query: 90  MKYIPWHIVNRIMN--LHAPEWSGEVRNITYS---ADGKTVSVVYRVTIYGTDAE-IFRE 143
           + YI  H V  + N       W+  +          +     V     +     +  + E
Sbjct: 63  VCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHE 122

Query: 144 STGTA-LVDEQGYGDAVQK----AEAMAFRRACARFG--LGLHLYHEDLL 186
             G       +    +++K    A     +RA   FG  LG  +  +D L
Sbjct: 123 DVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYL 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
1h2i_A	209	RAD52, DNA repair protein RAD52 homolog; DNA-bindi	99.41

>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} SCOP: d.50.1.3 PDB: 1kn0_A

Probab=99.41  E-value=2.8e-13  Score=114.26  Aligned_cols=120  Identities=24%  Similarity=0.377  Sum_probs=93.0

Q ss_pred             HHHHHHHHcCCCCCCcccccccC-CcccccchhHHHHhhhh-hcCC-ccccceeeEE--Eee--CCC-EEEEEEEEEEEe
Q 029845           64 LSEILKELNKNVPNSLIKIRVED-GFSMKYIPWHIVNRIMN-LHAP-EWSGEVRNIT--YSA--DGK-TVSVVYRVTIYG  135 (186)
Q Consensus        64 LsEIL~~L~kPfP~~~Ik~R~~~-g~~l~yIpW~~vnR~L~-~~aP-gW~~EVr~V~--ys~--~G~-~VtV~~RLTI~G  135 (186)
                      .+.|.+.|+++++++.|++|+.. +.++.||+...+..+.| +++. ||+-+|.++.  |.+  +|+ +|.+.+.|.|.-
T Consensus        36 ~~~iq~~L~~~lgpe~is~R~g~gg~kv~YIeg~kvI~lANeiFGFNGWSs~I~~~~vd~~d~~~gk~~v~~~aiVRVtL  115 (209)
T 1h2i_A           36 YQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQL  115 (209)
T ss_dssp             HHHHHHHHHCCBCTTTEEEEECTTSCEEEEECHHHHHHHHHHHHCTTTEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEE
T ss_pred             HHHHHHHHhcccCchhheeccCCCCceEEEeeHHHHHHHHHhccCCCCCeeEEEEeeceeEeccCCeEEEEEEEEEEEEE
Confidence            68899999999999999999964 78899999988777776 7777 7999997653  322  333 344555566666


Q ss_pred             cCceeEeecccccccC-CCC----CCchHHHHHHHHHHHHHHHhc--cceeccCCC
Q 029845          136 TDAEIFRESTGTALVD-EQG----YGDAVQKAEAMAFRRACARFG--LGLHLYHED  184 (186)
Q Consensus       136 ~DgeitREatGta~~~-d~~----~gDpv~aAes~AFrRACArFG--LGlYLY~ed  184 (186)
                      .||+ +||++|..... ...    +..+-+.|+.+|||||+-.||  ||.+||+.+
T Consensus       116 kDGt-~~EdiG~G~~~n~~~kg~A~ekAKKeAvTDAlKRaLr~FGn~lGn~lydk~  170 (209)
T 1h2i_A          116 KDGS-YHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKD  170 (209)
T ss_dssp             TTSC-EEEEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTGGGCHH
T ss_pred             CCCC-EecceeeEEEecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChH
Confidence            7884 79999987433 122    335678899999999999999  999999854

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1kn0a_	184	d.50.1.3 (A:) The homologous-pairing domain of Rad	2e-23

>d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52 recombinase {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: The homologous-pairing domain of Rad52 recombinase
domain: The homologous-pairing domain of Rad52 recombinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 2e-23
 Identities = 28/137 (20%), Positives = 44/137 (32%), Gaps = 16/137 (11%)

Query: 65  SEILKELNKNVPNSLIKIRVED-GFSMKYIPWHIVNRIMN--LHAPEWSGEVRNITY--- 118
             I K L + +    I  R+   G  + YI  H V  + N       W+  +        
Sbjct: 13  QAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFV 72

Query: 119 --SADGKTVSVVYRVTIYGTDAEIFRESTGTALV-----DEQGYGDAVQKAEAMAFRRAC 171
             +     V V   V +   D   + E  G  +             A ++A     +RA 
Sbjct: 73  DLNNGKFYVGVCAFVRVQLKDGS-YHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRAL 131

Query: 172 ARFG--LGLHLYHEDLL 186
             FG  LG  +  +D L
Sbjct: 132 RSFGNALGNCILDKDYL 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1kn0a_	184	The homologous-pairing domain of Rad52 recombinase	99.87

>d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52 recombinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: The homologous-pairing domain of Rad52 recombinase
domain: The homologous-pairing domain of Rad52 recombinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.4e-23  Score=168.10  Aligned_cols=121  Identities=22%  Similarity=0.302  Sum_probs=95.1

Q ss_pred             HHHHHHHHcCCCCCCcccccccC-CcccccchhHHHHhhhh-hcCC-ccccceeeEEEee-----CCCEEEEEEEEEEEe
Q 029845           64 LSEILKELNKNVPNSLIKIRVED-GFSMKYIPWHIVNRIMN-LHAP-EWSGEVRNITYSA-----DGKTVSVVYRVTIYG  135 (186)
Q Consensus        64 LsEIL~~L~kPfP~~~Ik~R~~~-g~~l~yIpW~~vnR~L~-~~aP-gW~~EVr~V~ys~-----~G~~VtV~~RLTI~G  135 (186)
                      ..+|++.|++|||+..|++|+.+ |..+.||||+.+.+++| ++++ ||+.||.++....     ..-+|.|.|.|.|.-
T Consensus        12 ~~~lq~~L~k~~~~e~Is~R~g~gg~~~~YI~~~~vi~~aNeVFGfdGWs~~i~~~~~d~~d~~~~~~~v~v~a~Vrvtl   91 (184)
T d1kn0a_          12 YQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQL   91 (184)
T ss_dssp             HHHHHHHTTCCBCTTTEEEEECSSSCEEEEECHHHHHHHHHHHHCTTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHhcccCHHHheeeeCCCCcceeeccHHHHHHHHHHHhCCCCceeEEEEEEeecccccCCceeEEEEEEEEEEE
Confidence            57899999999999999999965 78899999988655555 5665 7999998876421     222355666666666


Q ss_pred             cCceeEeecccccccCC-----CCCCchHHHHHHHHHHHHHHHhc--cceeccCCCC
Q 029845          136 TDAEIFRESTGTALVDE-----QGYGDAVQKAEAMAFRRACARFG--LGLHLYHEDL  185 (186)
Q Consensus       136 ~DgeitREatGta~~~d-----~~~gDpv~aAes~AFrRACArFG--LGlYLY~ed~  185 (186)
                      .|| .++|++|.....+     ..++++.+.|+++||||||.+||  ||++|||.+.
T Consensus        92 kDG-t~~e~~G~G~~~~~~~k~~a~~~a~KeA~TDAlKRA~~~FGn~lG~~LYdk~~  147 (184)
T d1kn0a_          92 KDG-SYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDY  147 (184)
T ss_dssp             TTS-CEEEEEEEEEECSCSCHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTSTTCHHH
T ss_pred             ECC-EEEeccccccccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhccHHH
Confidence            788 5889888764432     12568999999999999999999  9999999764