Citrus Sinensis ID: 029846

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTFTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARSCHDIFAC
Secondary Structure (PSIPRED)
ccccccccccccHHcccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEccEEEEEEEHHHHHHHHHcccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHcccccccccccccEEEEcccccccHHHHHHHHccccccccccHHHHHHHHHcccccHccccHHHHccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHccHHcccccEEEccccEEEEEcccEEEEEEHHHHHHHHHHcccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtdenqvdvkdevaelapfdptkkkkkkkvviqdpsddsvDKLAEKTETLSVSEGLESTFtglkkkkkkpvessllndeigdagddldghvgeddeadgsggprqrypwegsdrdYEYEELLGRVFNILRennpelagdrrrtvmrppqvlregtkkTVFVNFMDLCKTYVLHasaarschdifac
Flexible Loop (DISEMBL)
mtdenqvdvkdevaelapfdptkkkkkkkvviqdpsddsvdklaektetlsvseglestftglkkkkkkpvessllndeigdagddldghvgeddeadgsggprqrypwegsDRDYEYEELLGRVFNILRennpelagdrrrtvmrppqvlregtkktvFVNFMDLCKTYVLhasaarscHDIFAC
Low Complexity Region (SEG)
MTDENQVDVKDEVAELAPFDPTkkkkkkkVVIQDPSDDSVDKLAEKTETLSVSEGLESTFTGLkkkkkkPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARSCHDIFAC
Disordered region (IsUnstruct)
******************************************************************************************************************DYEYEELLGRVFNILRE******************VLREGTKKTVFVNFMDLCKTYVLHASAARSCHDIF**
Disordered Region (DISOPRED)
************VA*LAPF******************************************************************************************EGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARSCHDIFAC
Disordered Region (DISEMBL)
********VKDEVAELAPFDP********************KLAEKTETLSVSEGLESTF*************SLLNDEIGDAGDDLDGHVG************QRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARSCHDIFAC
Disordered Region (DISPRO)
*******DVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKT****************************************************************SDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARSCHDIFAC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTFTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARSCHDIFAC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
P55871	271	Eukaryotic translation in	N/A	no	0.908	0.623	0.741	7e-59
O24473	270	Eukaryotic translation in	N/A	no	0.897	0.618	0.730	8e-55
Q41969	268	Eukaryotic translation in	yes	no	0.903	0.626	0.688	7e-53
Q99L45	331	Eukaryotic translation in	yes	no	0.424	0.238	0.573	2e-20
Q5R4T9	333	Eukaryotic translation in	yes	no	0.397	0.222	0.615	2e-20
P20042	333	Eukaryotic translation in	yes	no	0.397	0.222	0.615	2e-20
P41035	333	Eukaryotic translation in	yes	no	0.397	0.222	0.615	3e-20
Q5E9D0	333	Eukaryotic translation in	yes	no	0.397	0.222	0.615	3e-20
Q54T27	317	Eukaryotic translation in	yes	no	0.387	0.227	0.506	9e-18
P41375	312	Eukaryotic translation in	yes	no	0.478	0.285	0.505	2e-17

>sp|P55871|IF2B_MALDO Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2

 Score =  226 bits (576), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 126/170 (74%), Positives = 142/170 (83%), Gaps = 1/170 (0%)

Query: 1   MTDENQVDVKDEV-AELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLEST 59
           M D+NQ +VKDEV A++APFDPTKKKKKK+VVIQD +DDSV KLAEK E  + SEG EST
Sbjct: 1   MADDNQNEVKDEVVADIAPFDPTKKKKKKEVVIQDTTDDSVGKLAEKAEACTASEGQEST 60

Query: 60  FTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           F GLKKKKKKP+E+S+LN+E GDA +DL+   GED+E +G       YPWEGSDRDY YE
Sbjct: 61  FAGLKKKKKKPIETSILNEESGDAVEDLNERTGEDEEGEGIVLETPSYPWEGSDRDYTYE 120

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           ELL RVF ILRENNP+LAGDRRRTVMRPPQVLREGTKK VFVNFMDLCKT
Sbjct: 121 ELLDRVFTILRENNPDLAGDRRRTVMRPPQVLREGTKKAVFVNFMDLCKT 170

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.
Malus domestica (taxid: 3750)

>sp|O24473|IF2B_WHEAT Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1

 Score =  213 bits (541), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 125/171 (73%), Positives = 141/171 (82%), Gaps = 4/171 (2%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DE Q++ K+E  E+APFDPTKKKKKKKVVIQDP+D+ VDKLAEKTE LSV+E  E++F
Sbjct: 1   MADEEQMERKEEATEIAPFDPTKKKKKKKVVIQDPADE-VDKLAEKTEGLSVTESGEASF 59

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGS--GGPRQRYPWEGSDRDYEY 118
            GLKKKKKK VE      E GD  D LD  VGED++ +G   GG  Q YPWEG+DRDY+Y
Sbjct: 60  VGLKKKKKKLVELDPSLVEAGDGEDTLDDQVGEDEQGEGIVLGGATQ-YPWEGTDRDYKY 118

Query: 119 EELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           +ELLGRVFNILRENNP+LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT
Sbjct: 119 DELLGRVFNILRENNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Triticum aestivum (taxid: 4565)

>sp|Q41969|IF2B_ARATH Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=2 SV=3

 Score =  206 bits (524), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 117/170 (68%), Positives = 141/170 (82%), Gaps = 2/170 (1%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDK-LAEKTETLSVSEGLEST 59
           M DE   ++++E  +LAPFDP+KKKKKKKVVIQ+P +D  +    EK+++L V++GLES+
Sbjct: 1   MADEIN-EIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLESS 59

Query: 60  FTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           FTG+KKKKKKP ESSLLN+E  DAG+DLD    ++ E +     +QRYPWEGS+RDY Y+
Sbjct: 60  FTGMKKKKKKPTESSLLNNESVDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYD 119

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT
Sbjct: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Arabidopsis thaliana (taxid: 3702)

>sp|Q99L45|IF2B_MOUSE Eukaryotic translation initiation factor 2 subunit 2 OS=Mus musculus GN=Eif2s2 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 60/82 (73%), Gaps = 3/82 (3%)

Query: 93  EDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVL 151
           ED + D       +  W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+
Sbjct: 149 EDSKKDDGISFSSQTAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVV 208

Query: 152 REGTKKTVFVNFMDLCKTYVLH 173
           R GTKKT FVNF D+CK  +LH
Sbjct: 209 RVGTKKTSFVNFTDICK--LLH 228

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Mus musculus (taxid: 10090)

>sp|Q5R4T9|IF2B_PONAB Eukaryotic translation initiation factor 2 subunit 2 OS=Pongo abelii GN=EIF2S2 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 59/78 (75%), Gaps = 4/78 (5%)

Query: 98  DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGT 155
           DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GT
Sbjct: 155 DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGT 214

Query: 156 KKTVFVNFMDLCKTYVLH 173
           KKT FVNF D+CK  +LH
Sbjct: 215 KKTSFVNFTDICK--LLH 230

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Pongo abelii (taxid: 9601)

>sp|P20042|IF2B_HUMAN Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 59/78 (75%), Gaps = 4/78 (5%)

Query: 98  DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGT 155
           DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GT
Sbjct: 155 DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGT 214

Query: 156 KKTVFVNFMDLCKTYVLH 173
           KKT FVNF D+CK  +LH
Sbjct: 215 KKTSFVNFTDICK--LLH 230

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Homo sapiens (taxid: 9606)

>sp|P41035|IF2B_RABIT Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus cuniculus GN=EIF2S2 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 59/78 (75%), Gaps = 4/78 (5%)

Query: 98  DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGT 155
           DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GT
Sbjct: 155 DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGT 214

Query: 156 KKTVFVNFMDLCKTYVLH 173
           KKT FVNF D+CK  +LH
Sbjct: 215 KKTSFVNFTDICK--LLH 230

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q5E9D0|IF2B_BOVIN Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus GN=EIF2S2 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 59/78 (75%), Gaps = 4/78 (5%)

Query: 98  DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGT 155
           DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GT
Sbjct: 155 DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGT 214

Query: 156 KKTVFVNFMDLCKTYVLH 173
           KKT FVNF D+CK  +LH
Sbjct: 215 KKTSFVNFTDICK--LLH 230

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Bos taurus (taxid: 9913)

>sp|Q54T27|IF2B_DICDI Eukaryotic translation initiation factor 2 subunit 2 OS=Dictyostelium discoideum GN=eif2s2 PE=3 SV=1

 Score = 89.7 bits (221), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 97  ADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTK 156
           +DG    +   PW G+DRDY+Y EL  R++++L+ NNP+L  D++RT M+PPQV+REGTK
Sbjct: 144 SDGDTFVQGTIPWAGTDRDYKYSELTYRIYHLLQANNPDLISDQKRT-MKPPQVMREGTK 202

Query: 157 KTVFVNFMDLCKT 169
           KT++ NF ++C T
Sbjct: 203 KTIWANFAEICGT 215

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Dictyostelium discoideum (taxid: 44689)

>sp|P41375|IF2B_DROME Eukaryotic translation initiation factor 2 subunit 2 OS=Drosophila melanogaster GN=eIF-2beta PE=1 SV=1

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 62/99 (62%), Gaps = 10/99 (10%)

Query: 76  LNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPE 135
           L++   D  DD      E+DE + S        W GSDRDY Y+ELL RVF I+ + NP+
Sbjct: 120 LDELFADQADDDKSEDKENDEDNSS-------TWFGSDRDYTYDELLKRVFEIILDKNPD 172

Query: 136 LAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKTYVLH 173
           +A  R+ + VMRPPQVLR GTKKT F NFMD+ KT  LH
Sbjct: 173 MAAGRKPKFVMRPPQVLRVGTKKTSFANFMDIAKT--LH 209

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This preinitiation complex mediates ribosomal recognition of a start codon during the scanning process of the leader region.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
297745750	290	unnamed protein product [Vitis vinifera]	0.903	0.579	0.828	6e-66
225434323	269	PREDICTED: eukaryotic translation initia	0.903	0.624	0.828	6e-66
224126981	270	predicted protein [Populus trichocarpa]	0.930	0.640	0.774	2e-63
118488478	270	unknown [Populus trichocarpa]	0.930	0.640	0.768	2e-63
388509026	195	unknown [Lotus japonicus]	0.892	0.851	0.805	8e-62
255648391	268	unknown [Glycine max]	0.897	0.623	0.786	4e-60
449529178	270	PREDICTED: eukaryotic translation initia	0.903	0.622	0.770	1e-59
356499030	354	PREDICTED: eukaryotic translation initia	0.897	0.471	0.781	1e-59
449443396	269	PREDICTED: eukaryotic translation initia	0.897	0.620	0.764	2e-58
255637249	268	unknown [Glycine max]	0.897	0.623	0.769	3e-58

>gi|297745750|emb|CBI15806.3| unnamed protein product [Vitis vinifera]

 Score =  255 bits (651), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 155/169 (91%), Gaps = 1/169 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DENQ +VKDEVAELAPFDPTKKKKKKKVVIQDP+DDSVDKLAEKTE+LSVSEG+E+TF
Sbjct: 22  MADENQNEVKDEVAELAPFDPTKKKKKKKVVIQDPADDSVDKLAEKTESLSVSEGVENTF 81

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEE 120
           +G+KKKKKKPVE+ +LND+ GD  +DLD H GED+E +G    + RYPWEGSDRDY+YEE
Sbjct: 82  SGMKKKKKKPVETDILNDDGGDGKEDLDDHNGEDEEGEGI-VLQPRYPWEGSDRDYKYEE 140

Query: 121 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT
Sbjct: 141 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434323|ref|XP_002265847.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Vitis vinifera]

 Score =  255 bits (651), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 155/169 (91%), Gaps = 1/169 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DENQ +VKDEVAELAPFDPTKKKKKKKVVIQDP+DDSVDKLAEKTE+LSVSEG+E+TF
Sbjct: 1   MADENQNEVKDEVAELAPFDPTKKKKKKKVVIQDPADDSVDKLAEKTESLSVSEGVENTF 60

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEE 120
           +G+KKKKKKPVE+ +LND+ GD  +DLD H GED+E +G    + RYPWEGSDRDY+YEE
Sbjct: 61  SGMKKKKKKPVETDILNDDGGDGKEDLDDHNGEDEEGEGI-VLQPRYPWEGSDRDYKYEE 119

Query: 121 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT
Sbjct: 120 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126981|ref|XP_002319977.1| predicted protein [Populus trichocarpa] gi|222858353|gb|EEE95900.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/177 (77%), Positives = 159/177 (89%), Gaps = 4/177 (2%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M D+N  D+KDEVAELAPFDPTKKKKKKKVVIQ+ +D+SVD LAEKTE+LSVS+GLES+F
Sbjct: 1   MADDN-TDLKDEVAELAPFDPTKKKKKKKVVIQENADESVDSLAEKTESLSVSDGLESSF 59

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGD-DLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           TGLKKKKKKPVE+SLL++E GDAG+ DLD H GE++  +G+   +QR+PW+G+DRDY+YE
Sbjct: 60  TGLKKKKKKPVETSLLDEETGDAGEEDLDVHAGEEENGEGADLQQQRFPWDGTDRDYDYE 119

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASA 176
           ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT  +H  A
Sbjct: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT--MHRQA 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488478|gb|ABK96053.1| unknown [Populus trichocarpa]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 136/177 (76%), Positives = 159/177 (89%), Gaps = 4/177 (2%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M D+N  D+KDEVAELAPFDPTKKKKK+KVVIQ+ +D+SVD LAEKTE+LSVS+GLES+F
Sbjct: 1   MADDN-TDLKDEVAELAPFDPTKKKKKEKVVIQENADESVDSLAEKTESLSVSDGLESSF 59

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGD-DLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           TGLKKKKKKPVE+SLL++E GDAG+ DLD H GE++  +G+   +QR+PW+G+DRDY+YE
Sbjct: 60  TGLKKKKKKPVETSLLDEETGDAGEEDLDVHAGEEENGEGADLQQQRFPWDGTDRDYDYE 119

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASA 176
           ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT  +H  A
Sbjct: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT--MHRQA 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509026|gb|AFK42579.1| unknown [Lotus japonicus]

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 137/170 (80%), Positives = 146/170 (85%), Gaps = 4/170 (2%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DE Q D+K+EV E+ PFDPTKKKKKKK+ I DP+DDSVDKLAEKTE LSVSEG+ESTF
Sbjct: 1   MADEAQADLKEEVPEIVPFDPTKKKKKKKITIVDPADDSVDKLAEKTENLSVSEGVESTF 60

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQ-RYPWEGSDRDYEYE 119
           TGLKKKKKKPVE S LNDE  DA +DLDG + ED+E      P Q RYPWEGSDRDYEYE
Sbjct: 61  TGLKKKKKKPVEMSALNDESVDAVEDLDGPIEEDEE---DAIPLQPRYPWEGSDRDYEYE 117

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFM LCKT
Sbjct: 118 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMGLCKT 167

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648391|gb|ACU24646.1| unknown [Glycine max]

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 143/169 (84%), Gaps = 2/169 (1%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DE   ++K+EV E+ PFDPTKKKKKKK+ I DP+DD V+KLAEKTE LSVSEG+E+ F
Sbjct: 1   MADETPNEMKEEVPEIVPFDPTKKKKKKKITIVDPADDPVEKLAEKTENLSVSEGVETAF 60

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEE 120
            GLKKKKKKPVE S LNDE GDA +DLD H  EDDE  G   P  RYPWEGSDRDYEYEE
Sbjct: 61  AGLKKKKKKPVEMSNLNDESGDANEDLDDH-PEDDEG-GVVAPEARYPWEGSDRDYEYEE 118

Query: 121 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT
Sbjct: 119 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529178|ref|XP_004171578.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis sativus]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/170 (77%), Positives = 152/170 (89%), Gaps = 2/170 (1%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLES-T 59
           M DE Q DV D+VA++APFDPTKKKKKKKVV+QDP+D+SVDKLAEKTE+LSVS+GLE+ T
Sbjct: 1   MADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDPTDESVDKLAEKTESLSVSDGLEAAT 60

Query: 60  FTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           F+GLKKKKKKPVE+S LN++  DA +DL+   GE+++ +G    + RYPWEG+DRDYEYE
Sbjct: 61  FSGLKKKKKKPVEASSLNEDGADATEDLEDQAGENEDREGLV-LQYRYPWEGTDRDYEYE 119

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT
Sbjct: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499030|ref|XP_003518347.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Glycine max]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/169 (78%), Positives = 143/169 (84%), Gaps = 2/169 (1%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DE   ++K+EV E+ PFDPTKKKKKKK+ I DP+DD V+KLAEKTE LSVSEG+E+ F
Sbjct: 87  MADETPNEMKEEVPEIVPFDPTKKKKKKKITIVDPADDPVEKLAEKTENLSVSEGVETAF 146

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEE 120
            GLKKKKKKPVE S LNDE GDA +DLD H  EDDE +    P  RYPWEGSDRDYEYEE
Sbjct: 147 AGLKKKKKKPVEMSNLNDESGDANEDLDDH-PEDDEGEVVA-PEARYPWEGSDRDYEYEE 204

Query: 121 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT
Sbjct: 205 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443396|ref|XP_004139463.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis sativus]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/170 (76%), Positives = 151/170 (88%), Gaps = 3/170 (1%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLES-T 59
           M DE Q DV D+VA++APFDPTKKKKKK VV+QDP+D+SVDKLAEKTE+LSVS+GLE+ T
Sbjct: 1   MADEVQNDVNDQVADIAPFDPTKKKKKK-VVLQDPTDESVDKLAEKTESLSVSDGLEAAT 59

Query: 60  FTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           F+GLKKKKKKPVE+S LN++  DA +DL+   GE+++ +G    + RYPWEG+DRDYEYE
Sbjct: 60  FSGLKKKKKKPVEASSLNEDGADATEDLEDQAGENEDREGLV-LQYRYPWEGTDRDYEYE 118

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT
Sbjct: 119 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 168

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637249|gb|ACU18955.1| unknown [Glycine max]

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 130/169 (76%), Positives = 144/169 (85%), Gaps = 2/169 (1%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DE   ++K+EV E+ PFDPTKKKKKKK+ I DP+D+ V+KLAEKTE LSVSEG+E+ F
Sbjct: 1   MADETPNEMKEEVPEIVPFDPTKKKKKKKITIVDPADEPVEKLAEKTENLSVSEGVETAF 60

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEE 120
           TGLKKKKKKPVE   LNDE GDA +DLD H  EDDE +    P+ RYPWEGSDR+YEYEE
Sbjct: 61  TGLKKKKKKPVEMGNLNDESGDAIEDLDDH-PEDDEGEMVV-PQARYPWEGSDRNYEYEE 118

Query: 121 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT
Sbjct: 119 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2147162	268	EIF2 BETA "eukaryotic translat	0.903	0.626	0.611	3.6e-50
UNIPROTKB|P41035	333	EIF2S2 "Eukaryotic translation	0.494	0.276	0.540	1e-23
UNIPROTKB|F1PZ47	333	EIF2S2 "Uncharacterized protei	0.494	0.276	0.540	3.9e-21
UNIPROTKB|P20042	333	EIF2S2 "Eukaryotic translation	0.494	0.276	0.540	3.9e-21
UNIPROTKB|F1S4Y8	328	EIF2S2 "Uncharacterized protei	0.494	0.280	0.540	3.9e-21
UNIPROTKB|Q4R5G5	333	Q4R5G5 "Macaca fascicularis br	0.494	0.276	0.540	3.9e-21
RGD|735192	333	Eif2s2 "eukaryotic translation	0.494	0.276	0.540	3.9e-21
UNIPROTKB|Q5E9D0	333	EIF2S2 "Eukaryotic translation	0.494	0.276	0.530	4.9e-21
MGI|MGI:1914454	331	Eif2s2 "eukaryotic translation	0.489	0.274	0.525	1.3e-20
ZFIN|ZDB-GENE-030131-3085	327	eif2s2 "eukaryotic translation	0.478	0.272	0.552	2.7e-20

TAIR|locus:2147162 EIF2 BETA "eukaryotic translation initiation factor 2 beta subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 104/170 (61%), Positives = 128/170 (75%)

Query:     1 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKL-AEKTETLSVSEGLEST 59
             M DE   ++++E  +LAPFDP+       VVIQ+P +D  +    EK+++L V++GLES+
Sbjct:     1 MADEIN-EIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLESS 59

Query:    60 FTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
             FTG+      P ESSLLN+E  DAG+DLD    ++ E +     +QRYPWEGS+RDY Y+
Sbjct:    60 FTGMKKKKKKPTESSLLNNESVDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYD 119

Query:   120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
             ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT
Sbjct:   120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

UNIPROTKB|P41035 EIF2S2 "Eukaryotic translation initiation factor 2 subunit 2" [Oryctolagus cuniculus (taxid:9986)]

 Score = 248 (92.4 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 53/98 (54%), Positives = 68/98 (69%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 194

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLH 173
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK  +LH
Sbjct:   195 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICK--LLH 230

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|F1PZ47 EIF2S2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 53/98 (54%), Positives = 68/98 (69%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 194

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLH 173
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK  +LH
Sbjct:   195 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICK--LLH 230

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|P20042 EIF2S2 "Eukaryotic translation initiation factor 2 subunit 2" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 53/98 (54%), Positives = 68/98 (69%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 194

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLH 173
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK  +LH
Sbjct:   195 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICK--LLH 230

GO:0046872 "metal ion binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=TAS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1S4Y8 EIF2S2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 53/98 (54%), Positives = 68/98 (69%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   132 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 189

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLH 173
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK  +LH
Sbjct:   190 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICK--LLH 225

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q4R5G5 Q4R5G5 "Macaca fascicularis brain cDNA clone: QorA-11002, similar to human eukaryotic translation initiation factor 2, subunit 2beta, 38kDa (EIF2S2), mRNA, RefSeq: NM_003908.2" [Macaca fascicularis (taxid:9541)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 53/98 (54%), Positives = 68/98 (69%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 194

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLH 173
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK  +LH
Sbjct:   195 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICK--LLH 230

GO:0003743 "translation initiation factor activity" evidence=ISS

RGD|735192 Eif2s2 "eukaryotic translation initiation factor 2, subunit 2 beta" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 53/98 (54%), Positives = 68/98 (69%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 194

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLH 173
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK  +LH
Sbjct:   195 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICK--LLH 230

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0002176 "male germ cell proliferation" evidence=ISO

GO:0003743 "translation initiation factor activity" evidence=ISO;ISS

GO:0008584 "male gonad development" evidence=ISO

UNIPROTKB|Q5E9D0 EIF2S2 "Eukaryotic translation initiation factor 2 subunit 2" [Bos taurus (taxid:9913)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 52/98 (53%), Positives = 68/98 (69%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DE+ +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   137 DEVLEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 194

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLH 173
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK  +LH
Sbjct:   195 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICK--LLH 230

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1914454 Eif2s2 "eukaryotic translation initiation factor 2, subunit 2 (beta)" [Mus musculus (taxid:10090)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 51/97 (52%), Positives = 67/97 (69%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPEL- 136
             DEI +  + L+    ED + D       +  W GS+RDY YEELL RVFNI+RE NP++ 
Sbjct:   137 DEILEKDEALED---EDSKKDDGISFSSQTAWAGSERDYTYEELLNRVFNIMREKNPDMV 193

Query:   137 AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLH 173
             AG++R+ VM+PPQV+R GTKKT FVNF D+CK  +LH
Sbjct:   194 AGEKRKFVMKPPQVVRVGTKKTSFVNFTDICK--LLH 228

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0002176 "male germ cell proliferation" evidence=IMP

GO:0003743 "translation initiation factor activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0008584 "male gonad development" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-3085 eif2s2 "eukaryotic translation initiation factor 2, subunit 2 beta" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 53/96 (55%), Positives = 67/96 (69%)

Query:    82 DAGDDLDGHVGEDDE--ADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-A 137
             D+    DG V +DD   AD      Q  P W GS+RDY Y+ELL RVFNI+RE NP++ A
Sbjct:   132 DSQSKEDG-VEDDDSKNADDITFSTQTGPAWAGSERDYTYDELLNRVFNIMREKNPDMVA 190

Query:   138 GDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLH 173
             G++R+ VM+PPQV+R GTKKT FVNF D+CK  +LH
Sbjct:   191 GEKRKFVMKPPQVVRVGTKKTSFVNFTDICK--LLH 224

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41969	IF2B_ARATH	No assigned EC number	0.6882	0.9032	0.6268	yes	no
P55871	IF2B_MALDO	No assigned EC number	0.7411	0.9086	0.6236	N/A	no
O24473	IF2B_WHEAT	No assigned EC number	0.7309	0.8978	0.6185	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
pfam01873	125	pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5	1e-12
smart00653	110	smart00653, eIF2B_5, domain present in translation	6e-12
PRK03988	138	PRK03988, PRK03988, translation initiation factor	8e-06
COG1601	151	COG1601, GCD7, Translation initiation factor 2, be	8e-05

>gnl|CDD|216754 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5

 Score = 61.2 bits (149), Expect = 1e-12
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 130 RENNPE-LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
              NP+ +AGD+ R  M PPQV  EG  KT+ VNF D+ K 
Sbjct: 3   FNQNPDRVAGDKFRFEMPPPQVKIEGKIKTIIVNFSDIAKA 43

This family includes the N terminus of eIF-5, and the C terminus of eIF-2 beta. This region corresponds to the whole of the archaebacterial eIF-2 beta homologue. The region contains a putative zinc binding C4 finger. Length = 125

>gnl|CDD|214764 smart00653, eIF2B_5, domain present in translation initiation factor eIF2B and eIF5

 Score = 59.2 bits (144), Expect = 6e-12
 Identities = 18/30 (60%), Positives = 19/30 (63%)

Query: 140 RRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
             R  M PPQVLREG  KTV VNF D+ K 
Sbjct: 1   FYRFKMPPPQVLREGKGKTVIVNFADIAKA 30

Length = 110

>gnl|CDD|235189 PRK03988, PRK03988, translation initiation factor IF-2 subunit beta; Validated

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCK 168
            Y+YEELL R +  L    PE      R  +  P V  EG  +T+  NF ++  
Sbjct: 4   YYDYEELLDRAYEKL----PEKVFKESRFEVPKPDVRIEGN-RTIIRNFKEIAD 52

Length = 138

>gnl|CDD|224517 COG1601, GCD7, Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 112 SDRDYEYEELLGRVFNILRENNPELAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           S+ + +YEELL R +       PE       R  +  P++ REG  +T+  NF D+ + 
Sbjct: 2   SEMEDDYEELLERAY----SELPEKEVKNDERFRIPEPEINREG-NRTIIRNFGDIAEA 55

Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
KOG2768	231	consensus Translation initiation factor 2, beta su	100.0
PRK03988	138	translation initiation factor IF-2 subunit beta; V	99.81
TIGR00311	133	aIF-2beta translation initiation factor aIF-2, bet	99.77
PRK12336	201	translation initiation factor IF-2 subunit beta; P	99.76
COG1601	151	GCD7 Translation initiation factor 2, beta subunit	99.53
PF01873	125	eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro:	99.52
smart00653	110	eIF2B_5 domain present in translation initiation f	99.43
COG1163	365	DRG Predicted GTPase [General function prediction	84.93

>KOG2768 consensus Translation initiation factor 2, beta subunit (eIF-2beta) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.6e-34  Score=244.06  Aligned_cols=125  Identities=51%  Similarity=0.725  Sum_probs=95.2

Q ss_pred             ccccCccccccccccccCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCchHHHHHHHHHHHHH
Q 029846           51 SVSEGLESTFTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILR  130 (186)
Q Consensus        51 ~~~~~~~~~f~~~KKKKKK~~~~~~~~~e~~~~~e~~~~~~~~~~~~~gi~~~~~~~~w~~~~~~y~YeeLL~R~f~~L~  130 (186)
                      .+++.++..+.++||||||++..+.++++...+++..+....++.++ ++.  ++.++|.|++++|+|+|||.|+|++||
T Consensus        17 ~~~~~l~~~~~~kKKKKkk~k~~s~~ee~~~~~~e~~~e~~~~~~e~-~~~--~~~~~~~g~e~dy~Y~ElL~rvf~ilr   93 (231)
T KOG2768|consen   17 EASERLDFLSLKKKKKKKKSKSLSALEEEDVNAGEFADEDKDPDKEV-RQN--QQGVSWVGSEPDYTYYELLSRVFNILR   93 (231)
T ss_pred             chhhcccccccccccccCCCCchhhhHHHHHhccchhhhccChhhcc-ccc--cccccccccCCCccHHHHHHHHHHHHH
Confidence            34556666666667766666655555554444444332221222211 133  334999999999999999999999999


Q ss_pred             hcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846          131 ENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       131 e~NPela~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      +|||+++|++++|+|+||||+|+| |||+|.||+|||++|||+|+||=+
T Consensus        94 eknpe~aGe~~k~v~~PPqvlReg-kkT~f~Nf~Dick~mhR~pdHv~~  141 (231)
T KOG2768|consen   94 EKNPELAGEKRKFVMKPPQVLREG-KKTVFVNFADICKTMHRSPDHVMQ  141 (231)
T ss_pred             hcCchhcccccceeeCCHHHHhhc-cceeeeeHHHHHHHhccChHHHHH
Confidence            999999999999999999999999 779999999999999999999854

>PRK03988 translation initiation factor IF-2 subunit beta; Validated

Probab=99.81  E-value=2.2e-20  Score=149.81  Aligned_cols=60  Identities=30%  Similarity=0.474  Sum_probs=56.1

Q ss_pred             CchHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846          115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       115 ~y~YeeLL~R~f~~L~e~NPela~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      +|+|++||+|||++|    |+..++..||.||+|+|.++|+| |+|.||.+||+.|||+|+||-.
T Consensus         4 ~~~Y~~lL~R~~~~l----p~~~~~~~R~~~p~~~v~~eG~k-Tvi~Nf~~I~~~L~R~~~hv~k   63 (138)
T PRK03988          4 YYDYEELLDRAYEKL----PEKVFKESRFEVPKPDVRIEGNR-TIIRNFKEIADRLNRDPKHVAK   63 (138)
T ss_pred             ccCHHHHHHHHHHHC----ccccCCCcceeCCCCeEEEEcCc-EEEecHHHHHHHHCCCHHHHHH
Confidence            689999999999999    88888889999999999999965 9999999999999999999863

>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative

Probab=99.77  E-value=3.6e-19  Score=142.04  Aligned_cols=58  Identities=24%  Similarity=0.406  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846          117 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       117 ~YeeLL~R~f~~L~e~NPela~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      +|++||+|||+.|    |+..++..||.||+|+|.++|+| |+|.||.+||++|||+|+||-.
T Consensus         1 ~Y~~lL~R~~~~l----~~~~~~~~R~~mP~~~v~~eG~k-Tvi~Nf~~Ia~~L~R~~~~v~k   58 (133)
T TIGR00311         1 DYEKLLERAIDQL----PDEVFETKRFEVPKAYIVIEGNR-TIIQNFREVAKALNRDEQHLLK   58 (133)
T ss_pred             CHHHHHHHHHHHC----ccccCCCccccCCCceEEEEcCc-EEEecHHHHHHHHCCCHHHHHH
Confidence            5999999999999    88777788999999999999965 9999999999999999999863

>PRK12336 translation initiation factor IF-2 subunit beta; Provisional

Probab=99.76  E-value=9e-19  Score=147.04  Aligned_cols=58  Identities=28%  Similarity=0.506  Sum_probs=55.1

Q ss_pred             chHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHh
Q 029846          116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAAR  178 (186)
Q Consensus       116 y~YeeLL~R~f~~L~e~NPela~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~  178 (186)
                      |+|++||+|+|+.|    |++.++..||.||+|||.++| +||+|.||.+||+.|||+|+||-
T Consensus         1 ~~Y~~lL~r~~~~l----~~~~~~~~R~~~p~~~v~~eG-~kT~i~N~~~i~~~l~R~~~~~~   58 (201)
T PRK12336          1 MDYESLLDRAMEVL----PEPTKSGERFSIPEPKIFIEG-KTTILTNFGEIADALNRDPDHLM   58 (201)
T ss_pred             CCHHHHHHHHHHHC----CcccCCccceecCCceEEEEc-CcEEEecHHHHHHHHCCCHHHHH
Confidence            68999999999999    998888899999999999999 56999999999999999999986

>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=5.9e-15  Score=120.38  Aligned_cols=61  Identities=30%  Similarity=0.479  Sum_probs=54.7

Q ss_pred             CCCchHHHHHHHHHHHHHhcCCCCccccc-ceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHh
Q 029846          113 DRDYEYEELLGRVFNILRENNPELAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAAR  178 (186)
Q Consensus       113 ~~~y~YeeLL~R~f~~L~e~NPela~~~~-Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~  178 (186)
                      ...|.|++||+|+|..|    |+..+... ||.||+|.|.++|++ ||+.||.+||+.|||||+|+-
T Consensus         3 ~~~~~yeelLeR~~~~l----P~~~~~~~~R~~ip~~~i~~~g~~-Ti~~Nf~dia~~l~rDp~h~~   64 (151)
T COG1601           3 EMEDDYEELLERAYSEL----PEKEVKNDERFRIPEPEINREGNR-TIIRNFGDIAEALNRDPEHLV   64 (151)
T ss_pred             hhhhhHHHHHHHHHHhC----CccccccccceecCCcceecccch-hHHHhHHHHHHHhcCCHHHHH
Confidence            34678999999999666    99888766 999999999999977 999999999999999999864

>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []

Probab=99.52  E-value=1.2e-14  Score=114.85  Aligned_cols=49  Identities=47%  Similarity=0.672  Sum_probs=41.1

Q ss_pred             hcCCC-CcccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846          131 ENNPE-LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       131 e~NPe-la~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      ++||+ ..++..||.||+|+|.++|++||+|.||.+||++|||+|+||-.
T Consensus         4 ~~np~~~~~~~~R~kmP~~~v~~eG~~KTvi~Nf~dI~~~L~R~p~~~~k   53 (125)
T PF01873_consen    4 EKNPERSNSDKFRYKMPPPQVKIEGKKKTVIVNFVDICKALNRDPEHVLK   53 (125)
T ss_dssp             CSSTTTSCSSSSS-CCCT--EEEETSTEEEETTHHHHHHHHTSSHHHHHH
T ss_pred             HhCcCcccCCCcceecCCCeEEEEccceeeeecHHHHHHHHCCCHHHHHH
Confidence            57899 45666799999999999998889999999999999999999864

Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....

>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5

Probab=99.43  E-value=1.3e-13  Score=107.11  Aligned_cols=39  Identities=46%  Similarity=0.595  Sum_probs=36.5

Q ss_pred             cceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846          141 RRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       141 ~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      .||.||+|+|.++|++||+|.||.+||++|||+|+||-.
T Consensus         2 ~R~~~p~~~v~~eG~~kTvi~Nf~~I~~~L~R~p~hv~k   40 (110)
T smart00653        2 YRFKMPPPQVLREGKGKTVIVNFADIAKALNRPPDHVLK   40 (110)
T ss_pred             CccccCCCeEEEEcCCeEEEEcHHHHHHHHCCCHHHHHH
Confidence            489999999999998779999999999999999999863

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=84.93  E-value=0.78  Score=42.71  Aligned_cols=50  Identities=22%  Similarity=0.460  Sum_probs=37.8

Q ss_pred             CCCchHHHHHHHHHHHHHhcCCCCc-----ccccceecCCCeEEEeCCceeEeechHHHHHHhCCC
Q 029846          113 DRDYEYEELLGRVFNILRENNPELA-----GDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLH  173 (186)
Q Consensus       113 ~~~y~YeeLL~R~f~~L~e~NPela-----~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rd  173 (186)
                      .++++-++|++++|..|     .+.     ........++|-|+|.|+.      .+|+|.+|||+
T Consensus       272 ~~~~nld~L~e~i~~~L-----~liRVYtK~~g~~pd~~~PlIlr~GsT------V~Dvc~~IH~~  326 (365)
T COG1163         272 KKGINLDELKERIWDVL-----GLIRVYTKPPGEEPDFDEPLILRRGST------VGDVCRKIHRD  326 (365)
T ss_pred             ccCCCHHHHHHHHHHhh-----CeEEEEecCCCCCCCCCCCeEEeCCCc------HHHHHHHHHHH
Confidence            44667899999999998     221     0112334579999999966      89999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
3cw2_K	139	Translation initiation factor 2 subunit beta; AIF2	2e-14
2d74_B	148	Translation initiation factor 2 beta subunit; prot	1e-13
1nee_A	138	EIF-2-beta, probable translation initiation factor	1e-13
2e9h_A	157	EIF-5, eukaryotic translation initiation factor 5;	5e-06
2g2k_A	170	EIF-5, eukaryotic translation initiation factor 5;	2e-05
1k8b_A	52	EIF-2-beta, probable translation initiation factor	9e-04

>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Length = 139

 Score = 66.1 bits (161), Expect = 2e-14
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 113 DRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
             + EY E+L R+++ L E        +  T   P  ++      T+  NF + C  
Sbjct: 2   SSEKEYVEMLDRLYSKLPEKG-----RKEGTQSLPNMIILNIGNTTIIRNFAEYCDR 53

>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Length = 148

 Score = 63.8 bits (155), Expect = 1e-13
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 114 RDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
             Y+YE+LL + +  L EN       + R  +    V  EG  KT+  NF D+   
Sbjct: 4   DYYDYEKLLEKAYQELPENVK---HHKSRFEVPGALVTIEG-NKTIIENFKDIADA 55

>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Length = 138

 Score = 63.8 bits (155), Expect = 1e-13
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 111 GSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
           GS  D  YE+LL R  + L    P    + +R  +     + +G  +T   NF ++   
Sbjct: 1   GSHMDD-YEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQG-NRTFIQNFREVADA 53

>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 157

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 132 NNPELAGDRRRTVMRPPQVLREGTK---KTVFVNFMDLCKT 169
            N  ++    R  M       EG     KTV VN +D+ K 
Sbjct: 12  VNRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKA 52

>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Length = 170

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 129 LRENNPELAGD-RRRTVMRPPQVLREGTK---KTVFVNFMDLCKT 169
           L  N      D   R  M       EG     KTV VN +D+ K 
Sbjct: 1   LSVNVNRSVMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKA 45

>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1 Length = 52

 Score = 35.1 bits (81), Expect = 9e-04
 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 149 QVLREGTKKTVFVNFMDLCKT 169
           ++L EG  +T+  NF +L K 
Sbjct: 1   EILIEG-NRTIIRNFRELAKA 20

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
1nee_A	138	EIF-2-beta, probable translation initiation factor	99.78
2d74_B	148	Translation initiation factor 2 beta subunit; prot	99.77
3cw2_K	139	Translation initiation factor 2 subunit beta; AIF2	99.75
2e9h_A	157	EIF-5, eukaryotic translation initiation factor 5;	99.36
1k8b_A	52	EIF-2-beta, probable translation initiation factor	99.18
2g2k_A	170	EIF-5, eukaryotic translation initiation factor 5;	99.12

>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1

Probab=99.78  E-value=4.4e-21  Score=152.76  Aligned_cols=60  Identities=20%  Similarity=0.280  Sum_probs=54.9

Q ss_pred             CchHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846          115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       115 ~y~YeeLL~R~f~~L~e~NPela~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      +|+|++||+|||++|    |+..++..||.||+|||.++|+| |+|.||.+||++|||+|+||-.
T Consensus         4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~~mp~~~v~~eG~k-Tvi~Nf~dIa~~L~R~p~hv~k   63 (138)
T 1nee_A            4 MDDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQGNR-TFIQNFREVADALNRDPQHLLK   63 (138)
T ss_dssp             CCSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEETTE-EEESCHHHHHHHHCSSHHHHHH
T ss_pred             ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEECCc-EEEEcHHHHHHHHCCCHHHHHH
Confidence            689999999999999    66556678999999999999986 9999999999999999999853

>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*

Probab=99.77  E-value=3.7e-20  Score=149.08  Aligned_cols=60  Identities=28%  Similarity=0.417  Sum_probs=55.5

Q ss_pred             CchHHHHHHHHHHHHHhcCCCCc-ccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846          115 DYEYEELLGRVFNILRENNPELA-GDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       115 ~y~YeeLL~R~f~~L~e~NPela-~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      .|+|++||+|||++|    |+.+ ++..||.||+|||.++|+ ||+|.||.+||++|||+|+||-.
T Consensus         5 ~~~Y~~LL~R~~~~l----p~~~~~~~~RykmP~~~v~~eGk-KTvi~Nf~dIa~~L~R~p~hv~k   65 (148)
T 2d74_B            5 YYDYEKLLEKAYQEL----PENVKHHKSRFEVPGALVTIEGN-KTIIENFKDIADALNRDPQHLLK   65 (148)
T ss_dssp             TTCHHHHHHTTTSSS----CHHHHSSSCCCCCCCCCEEEETT-EEEESCHHHHHHHHTCCSHHHHH
T ss_pred             cccHHHHHHHHHHHC----ccccCCCCCceecCCCeEEEecC-eEEEEcHHHHHHHHCCCHHHHHH
Confidence            588999999999999    9987 777899999999999995 69999999999999999999853

>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*

Probab=99.75  E-value=2.1e-20  Score=149.02  Aligned_cols=60  Identities=23%  Similarity=0.409  Sum_probs=54.5

Q ss_pred             CchHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846          115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       115 ~y~YeeLL~R~f~~L~e~NPela~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      +|+|++||+|||++|    |+..+...||.||+|||.++|+| |+|.||.+||++|||+|+||-.
T Consensus         4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~kmp~~~v~~eG~k-Tvi~Nf~dIa~~L~R~p~hv~k   63 (139)
T 3cw2_K            4 EKEYVEMLDRLYSKL----PEKGRKEGTQSLPNMIILNIGNT-TIIRNFAEYCDRIRREDKICMK   63 (139)
T ss_dssp             SGGGHHHHTTTTTSS----TTSSSCSSCCSCCCCCCCCCSSS-CCCSCSSSTTTTTSSCCTTTHH
T ss_pred             ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEECCe-EEEEcHHHHHHHHCCCHHHHHH
Confidence            689999999999999    55446678999999999999986 9999999999999999999853

>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.2e-13  Score=112.07  Aligned_cols=50  Identities=26%  Similarity=0.252  Sum_probs=44.7

Q ss_pred             HHHHHhcCCCCcccccceecCCCeEEEeCC---ceeEeechHHHHHHhCCCHHHHhh
Q 029846          126 FNILRENNPELAGDRRRTVMRPPQVLREGT---KKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       126 f~~L~e~NPela~~~~Rf~ippPqV~reGt---KKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      |+|+|++||.+.    ||.||+|||.++|+   +||+|.||.+||++|||+|+||-.
T Consensus        10 ~nI~r~~~d~~~----RykmP~~~v~~eG~gnG~KTvi~Nf~dIak~L~R~p~hv~k   62 (157)
T 2e9h_A           10 VNVNRSVSDQFY----RYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTK   62 (157)
T ss_dssp             EESSTTCCCSCC----CCEEECCCEEECSSSSSCEEEETTHHHHHHHTTSCTHHHHH
T ss_pred             EeccCCCCCccc----ceecCCCeEEEeccCCccEEEEEcHHHHHHHHCCCHHHHHH
Confidence            567777887775    89999999999998   679999999999999999999854

>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1

Probab=99.18  E-value=1e-11  Score=84.32  Aligned_cols=30  Identities=27%  Similarity=0.385  Sum_probs=27.9

Q ss_pred             eEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846          149 QVLREGTKKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       149 qV~reGtKKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      +|+|+|+| |+|.||.+||++|||+|+||-.
T Consensus         1 ~v~~eG~k-Tvi~Nf~~Ia~~L~R~p~hv~k   30 (52)
T 1k8b_A            1 EILIEGNR-TIIRNFRELAKAVNRDEEFFAK   30 (52)
T ss_dssp             CEEEETTE-EEECCHHHHHHHHHTCHHHHHH
T ss_pred             CcEEEcCe-EEEECHHHHHHHHCCCHHHHHH
Confidence            68999987 9999999999999999999854

>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}

Probab=99.12  E-value=2.3e-11  Score=99.88  Aligned_cols=40  Identities=28%  Similarity=0.204  Sum_probs=36.6

Q ss_pred             ccceecCCCeEEEeCC---ceeEeechHHHHHHhCCCHHHHhh
Q 029846          140 RRRTVMRPPQVLREGT---KKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       140 ~~Rf~ippPqV~reGt---KKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      -.||.||+|||.++|+   +||+|.||.+||++|||+|+||-.
T Consensus        13 ~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~k   55 (170)
T 2g2k_A           13 FYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTK   55 (170)
T ss_dssp             CSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHH
T ss_pred             cccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHH
Confidence            3599999999999998   579999999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1neea1	98	d.241.1.1 (A:1-98) Translation initiation factor 2	9e-13
d1k8ba_	52	d.241.1.1 (A:) Translation initiation factor 2 bet	4e-04

>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 59.4 bits (144), Expect = 9e-13
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
            +YE+LL R  + L    P    + +R  +     + +G  +T   NF ++   
Sbjct: 2   DDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQG-NRTFIQNFREVADA 50

>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 52

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 34.9 bits (81), Expect = 4e-04
 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 149 QVLREGTKKTVFVNFMDLCKT 169
           ++L EG  +T+  NF +L K 
Sbjct: 1   EILIEG-NRTIIRNFRELAKA 20

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1neea1	98	Translation initiation factor 2 beta, aIF2beta, N-	99.76
d1k8ba_	52	Translation initiation factor 2 beta, aIF2beta, N-	99.16

>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=6.7e-21  Score=141.85  Aligned_cols=59  Identities=20%  Similarity=0.303  Sum_probs=53.9

Q ss_pred             chHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846          116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       116 y~YeeLL~R~f~~L~e~NPela~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      ++|++||+|||+.|    |+...+..||.||+|+|.++| +||+|.||.+||+.|||+|+||..
T Consensus         2 ~~Y~~LL~R~~~~l----~~~~~~~~R~~mP~~~v~~eG-kkTii~Nf~~Ia~~L~R~p~hl~k   60 (98)
T d1neea1           2 DDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQG-NRTFIQNFREVADALNRDPQHLLK   60 (98)
T ss_dssp             CSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEET-TEEEESCHHHHHHHHCSSHHHHHH
T ss_pred             ccHHHHHHHHHHHC----CcccCCCcceecCCceEEEec-ceEEEechHHHHHHHCCCHHHHHH
Confidence            47999999999999    777667779999999999999 569999999999999999999964

>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.16  E-value=7.5e-12  Score=83.34  Aligned_cols=30  Identities=27%  Similarity=0.388  Sum_probs=27.6

Q ss_pred             eEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846          149 QVLREGTKKTVFVNFMDLCKTYVLHASAARS  179 (186)
Q Consensus       149 qV~reGtKKTif~NF~eIck~L~Rdp~hv~~  179 (186)
                      +|+++| +||+|.||.+||++|||+|+||-.
T Consensus         1 ~v~~EG-kkTvi~Nf~eI~~~L~R~p~hv~k   30 (52)
T d1k8ba_           1 EILIEG-NRTIIRNFRELAKAVNRDEEFFAK   30 (52)
T ss_dssp             CEEEET-TEEEECCHHHHHHHHHTCHHHHHH
T ss_pred             CceEec-ceEeeecHHHHHHHhCCCHHHHHH
Confidence            689999 569999999999999999999964