Citrus Sinensis ID: 029859

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSW
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKlqvhppeiivdhhiylppgpghhnahgpsw
Flexible Loop (DISEMBL)
mndadvskqIQQMVRFIRQEAEEKANeisvsaeeefnieklqlveAEKKKIRqeyerkekqveiRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSW
Low Complexity Region (SEG)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLppgpghhnahgpSW
Disordered region (IsUnstruct)
********************************************************************EYSMQLNASRIKVLQA***************VLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL**************
Disordered Region (DISOPRED)
******SKQIQQMVRFIRQEAEEKANEISVSAEEEFN*********************************************QAQDDLVSNMMEAA************SYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPP***********W
Disordered Region (DISEMBL)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPG*********
Disordered Region (DISPRO)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNxxxxxxxxxxxxxxxxxxxxxxxxVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
Q9MB46	230	V-type proton ATPase subu	N/A	no	1.0	0.808	0.994	1e-103
Q9SWE7	230	V-type proton ATPase subu	N/A	no	1.0	0.808	0.989	1e-102
O23948	237	V-type proton ATPase subu	N/A	no	0.983	0.772	0.812	4e-79
Q41396	229	V-type proton ATPase subu	N/A	no	0.978	0.794	0.797	9e-77
Q39258	230	V-type proton ATPase subu	yes	no	0.983	0.795	0.748	2e-74
Q40272	226	V-type proton ATPase subu	N/A	no	0.994	0.818	0.752	6e-71
P0CAN7	237	V-type proton ATPase subu	no	no	1.0	0.784	0.708	8e-70
Q9C9Z8	235	V-type proton ATPase subu	no	no	0.919	0.727	0.690	3e-64
P31402	226	V-type proton ATPase subu	N/A	no	0.930	0.765	0.482	5e-35
P11019	226	V-type proton ATPase subu	yes	no	0.913	0.752	0.457	2e-34

>sp|Q9MB46|VATE_CITUN V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/186 (99%), Positives = 185/186 (99%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSW 186
           AHGPS 
Sbjct: 181 AHGPSC 186

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Citrus unshiu (taxid: 55188)

>sp|Q9SWE7|VATE_CITLI V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/186 (98%), Positives = 184/186 (98%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSW 186
           AHGPS 
Sbjct: 181 AHGPSC 186

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Citrus limon (taxid: 2708)

>sp|O23948|VATE_GOSHI V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1

 Score =  293 bits (750), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 156/192 (81%), Positives = 170/192 (88%), Gaps = 9/192 (4%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           M+DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHH- 179
           SL+RLKEP VLLRCRK+D HLVESVL+SAKEEYA K+ VHPPEIIVD  ++LPPGP HH 
Sbjct: 121 SLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVD-DVHLPPGPSHHH 179

Query: 180 -------NAHGP 184
                   AHGP
Sbjct: 180 GFFHHHAEAHGP 191

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Gossypium hirsutum (taxid: 3635)

>sp|Q41396|VATE_SPIOL V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1

 Score =  285 bits (730), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 146/183 (79%), Positives = 162/183 (88%), Gaps = 1/183 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DV KQIQQMVRFIRQEAEEKANEISV+AEEEFNIEKLQLVEAEKKKIR EYERKEK
Sbjct: 1   MNDTDVQKQIQQMVRFIRQEAEEKANEISVAAEEEFNIEKLQLVEAEKKKIRPEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++R+KIEYSMQLNASRIKVLQAQDDLV++M E A+KE+L VS DH+ YK+LLK L+VQ
Sbjct: 61  QVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRL+EP VLLRCR+DD HLVE VL SAKEEYA+K +VH PEIIVD  I+LP GP HH 
Sbjct: 121 SLLRLREPGVLLRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVD-SIHLPAGPSHHK 179

Query: 181 AHG 183
            HG
Sbjct: 180 EHG 182

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Spinacia oleracea (taxid: 3562)

>sp|Q39258|VATE1_ARATH V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2

 Score =  278 bits (710), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 137/183 (74%), Positives = 161/183 (87%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEK
Sbjct: 1   MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           Q ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ
Sbjct: 61  QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
            LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+LPP P  ++
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSND 180

Query: 181 AHG 183
            HG
Sbjct: 181 PHG 183

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Required for Golgi organization and vacuole function in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40272|VATE_MESCR V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1

 Score =  266 bits (680), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 140/186 (75%), Positives = 157/186 (84%), Gaps = 1/186 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DV  QIQQMVRF+RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK K
Sbjct: 1   MNDTDVQNQIQQMVRFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++R+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQ
Sbjct: 61  QVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCR++D H V  VL SA+EEY +K  V  PE+IVD  I+LPP P  ++
Sbjct: 121 SLLRLKEPAVLLRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVD-DIHLPPAPTSYD 179

Query: 181 AHGPSW 186
           +H  S 
Sbjct: 180 SHELSC 185

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|P0CAN7|VATE3_ARATH V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1

 Score =  262 bits (670), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 158/192 (82%), Gaps = 6/192 (3%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSR------DHNSYKKLL 114
           QV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LL
Sbjct: 61  QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query: 115 KGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPP 174
           K LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+LPP
Sbjct: 121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPP 180

Query: 175 GPGHHNAHGPSW 186
            P   + H  S 
Sbjct: 181 APSDDDPHALSC 192

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9Z8|VATE2_ARATH V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1

 Score =  244 bits (622), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/171 (69%), Positives = 150/171 (87%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++
Sbjct: 61  QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY 171
           SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++
Sbjct: 121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVF 171

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|P31402|VATE_MANSE V-type proton ATPase subunit E OS=Manduca sexta GN=VHA26 PE=2 SV=1

 Score =  147 bits (370), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 120/174 (68%), Gaps = 1/174 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE++KKI+ S  LN +R+KVL+ ++D V N+++ A K +  V +D   Y  LL  LIVQ
Sbjct: 63  QVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDIKLYSDLLVTLIVQ 122

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPP 174
           +L +L EP V LR R+ D  LVES+L  A+++Y  K++     + +D+  +LPP
Sbjct: 123 ALFQLVEPTVTLRVRQADKALVESLLGRAQQDYKAKIK-KDVVLKIDNENFLPP 175

The vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. This subunit is essential for its assembly or catalytic function. V-ATPase is responsible for energizing electrophoretic K(+)/2H(+) antiport by generating a transmembrane voltage of more than 200mV.

Manduca sexta (taxid: 7130)

>sp|P11019|VATE1_BOVIN V-type proton ATPase subunit E 1 OS=Bos taurus GN=ATP6V1E1 PE=2 SV=1

 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/175 (45%), Positives = 120/175 (68%), Gaps = 5/175 (2%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct: 63  QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLP 173
            L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YLP
Sbjct: 123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDV---DVQIDQEAYLP 174

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
12585474	230	RecName: Full=V-type proton ATPase subun	1.0	0.808	0.994	1e-101
12585492	230	RecName: Full=V-type proton ATPase subun	1.0	0.808	0.989	1e-100
255537687	230	vacuolar ATP synthase subunit E, putativ	0.989	0.8	0.858	2e-86
225426050	230	PREDICTED: V-type proton ATPase subunit	0.989	0.8	0.864	4e-85
118488420	229	unknown [Populus trichocarpa]	0.989	0.803	0.847	7e-84
224118820	229	predicted protein [Populus trichocarpa]	0.989	0.803	0.847	8e-84
224123646	229	predicted protein [Populus trichocarpa]	1.0	0.812	0.838	7e-83
226496896	230	uncharacterized protein LOC100273417 [Ze	0.983	0.795	0.830	1e-79
324331819	229	vacuolar ATP synthase subunit [Camellia	0.983	0.799	0.831	6e-79
195619166	230	vacuolar ATP synthase subunit E [Zea may	0.983	0.795	0.825	6e-79

>gi|12585474|sp|Q9MB46.1|VATE_CITUN RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=Vacuolar proton pump subunit E gi|6729085|dbj|BAA89661.1| vacuolar H+-ATPase E subunit-1 [Citrus unshiu]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/186 (99%), Positives = 185/186 (99%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSW 186
           AHGPS 
Sbjct: 181 AHGPSC 186

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12585492|sp|Q9SWE7.1|VATE_CITLI RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=ClVE-1; AltName: Full=Vacuolar proton pump subunit E gi|5733660|gb|AAD49706.1| vacuolar V-H+ATPase subunit E [Citrus limon]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/186 (98%), Positives = 184/186 (98%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSW 186
           AHGPS 
Sbjct: 181 AHGPSC 186

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537687|ref|XP_002509910.1| vacuolar ATP synthase subunit E, putative [Ricinus communis] gi|223549809|gb|EEF51297.1| vacuolar ATP synthase subunit E, putative [Ricinus communis]

 Score =  323 bits (827), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 158/184 (85%), Positives = 174/184 (94%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK+RQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKVRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE+RKKIEYSMQLNASRIKVLQAQDD+V+ M EAA+K++LNVSRDH+ Y+KLLK LIVQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDVVNAMKEAATKDLLNVSRDHHVYRKLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDD HL+ESVL+SAKEEYA+K+ VH PEIIVD+H++LPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDLHLLESVLDSAKEEYAEKVNVHAPEIIVDNHVFLPPAPSHHN 180

Query: 181 AHGP 184
            HGP
Sbjct: 181 VHGP 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426050|ref|XP_002274995.1| PREDICTED: V-type proton ATPase subunit E [Vitis vinifera] gi|297742293|emb|CBI34442.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (816), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 159/184 (86%), Positives = 173/184 (94%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV+IRKKIEYSMQLNASRIKVLQAQDDLVS+M EAASKE+L+VS DH+ YK+LL+ L+VQ
Sbjct: 61  QVDIRKKIEYSMQLNASRIKVLQAQDDLVSSMKEAASKELLHVSHDHHVYKRLLRDLVVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDD HLVES+L+SAK+EYA K  V+PPEIIVDH +YLPP P HH+
Sbjct: 121 SLLRLKEPAVLLRCRKDDLHLVESILDSAKDEYAGKANVYPPEIIVDHQVYLPPAPSHHH 180

Query: 181 AHGP 184
           AHGP
Sbjct: 181 AHGP 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488420|gb|ABK96025.1| unknown [Populus trichocarpa]

 Score =  315 bits (806), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 156/184 (84%), Positives = 170/184 (92%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A K++LNVS+ H+ YK LLK LIVQ
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDVVNSMKDVAGKDLLNVSQHHHRYKHLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVL SAKEEYA+K  V+PPE+IVDH +YLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLNSAKEEYAEKANVYPPEVIVDHDVYLPPAPSHHN 180

Query: 181 AHGP 184
           AHGP
Sbjct: 181 AHGP 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118820|ref|XP_002331357.1| predicted protein [Populus trichocarpa] gi|222874395|gb|EEF11526.1| predicted protein [Populus trichocarpa]

 Score =  314 bits (805), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 156/184 (84%), Positives = 170/184 (92%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A K++LNVS+ H+ YK LLK LIVQ
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDVVNSMKDVAGKDLLNVSQHHHRYKHLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVL SAKEEYA+K  V+PPE+IVDH +YLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLHSAKEEYAEKANVYPPEVIVDHDVYLPPAPSHHN 180

Query: 181 AHGP 184
           AHGP
Sbjct: 181 AHGP 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123646|ref|XP_002319131.1| predicted protein [Populus trichocarpa] gi|118481235|gb|ABK92567.1| unknown [Populus trichocarpa] gi|118486319|gb|ABK95001.1| unknown [Populus trichocarpa] gi|222857507|gb|EEE95054.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (797), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 156/186 (83%), Positives = 170/186 (91%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A KE+LNVS++ + YK LLK LIVQ
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDMVNSMKDGAGKELLNVSQNQHHYKNLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDH+LVESVL SAK+EYA+K  V PPEIIVDH+IYLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHNLVESVLHSAKDEYAEKANVFPPEIIVDHNIYLPPAPSHHN 180

Query: 181 AHGPSW 186
           AHG S 
Sbjct: 181 AHGLSC 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496896|ref|NP_001141326.1| uncharacterized protein LOC100273417 [Zea mays] gi|194703988|gb|ACF86078.1| unknown [Zea mays] gi|413950812|gb|AFW83461.1| hypothetical protein ZEAMMB73_442651 [Zea mays]

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 162/183 (88%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEA+EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEADEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE+RKKIEYSMQLNASRIKVLQAQDDLV+ M + A KE+L VS +H+ YK LLK LI+Q
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDLVNKMKDDAMKELLLVSHNHHEYKNLLKDLIIQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
            LLRLKEPAVLLRCRKDDHH VESVL SAK EYA K  VH PEI VDH +YLPP P HH+
Sbjct: 121 GLLRLKEPAVLLRCRKDDHHHVESVLHSAKHEYASKADVHEPEIFVDHDVYLPPAPSHHD 180

Query: 181 AHG 183
           AHG
Sbjct: 181 AHG 183

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324331819|gb|ADY38690.1| vacuolar ATP synthase subunit [Camellia sinensis]

 Score =  298 bits (763), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 153/184 (83%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE+R+KIEYSMQLNASRIKVLQAQDD+V++M +AA+KE+LNVS DH+ Y+KLLK LIVQ
Sbjct: 61  QVEVRRKIEYSMQLNASRIKVLQAQDDVVNSMKDAAAKELLNVSHDHHVYRKLLKELIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRK+D + VE V+ SAKEEYA K +VH PEI+VD  IYLP  P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKEDLNHVEHVVHSAKEEYADKAKVHAPEIVVD-SIYLPAAPSHHN 179

Query: 181 AHGP 184
           AHGP
Sbjct: 180 AHGP 183

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195619166|gb|ACG31413.1| vacuolar ATP synthase subunit E [Zea mays] gi|223946837|gb|ACN27502.1| unknown [Zea mays]

 Score =  298 bits (763), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 151/183 (82%), Positives = 162/183 (88%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADV+KQIQQMVRFIRQEA+EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVAKQIQQMVRFIRQEADEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE+RKKIEYSMQLNASRIKVLQAQDDLV+ M + A KE+L VS +H+ YK LLK LIVQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDLVNKMKDDAMKELLLVSHNHHEYKNLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
            LLRLKEPAVLLRCRK+DHH VESVL SAK EYA K  VH PEI VDH +YLPP P HH+
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKHEYASKADVHEPEIFVDHDVYLPPAPSHHD 180

Query: 181 AHG 183
           AHG
Sbjct: 181 AHG 183

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2136088	230	TUF "AT4G11150" [Arabidopsis t	0.924	0.747	0.767	1.8e-64
TAIR|locus:2024527	237	VHA-E3 "AT1G64200" [Arabidopsi	0.924	0.725	0.735	6.2e-62
TAIR|locus:2077893	235	VHA-E2 "vacuolar H+-ATPase sub	0.924	0.731	0.691	1.3e-59
FB|FBgn0015324	226	Vha26 "Vacuolar H[+]-ATPase 26	0.913	0.752	0.473	4.4e-36
UNIPROTKB|P11019	226	ATP6V1E1 "V-type proton ATPase	0.908	0.747	0.454	3.1e-35
UNIPROTKB|Q58DR7	202	ATP6V1E1 "ATPase, H+ transport	0.908	0.836	0.454	3.1e-35
MGI|MGI:894326	226	Atp6v1e1 "ATPase, H+ transport	0.908	0.747	0.454	3.1e-35
UNIPROTKB|E2R1R4	226	ATP6V1E1 "Uncharacterized prot	0.908	0.747	0.454	4e-35
UNIPROTKB|P36543	226	ATP6V1E1 "V-type proton ATPase	0.908	0.747	0.454	5.1e-35
UNIPROTKB|F1SHR3	226	ATP6V1E1 "V-type proton ATPase	0.908	0.747	0.454	5.1e-35

TAIR|locus:2136088 TUF "AT4G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 132/172 (76%), Positives = 154/172 (89%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEK
Sbjct:     1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ
Sbjct:    61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172
              LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+L
Sbjct:   121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFL 172

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA;TAS

GO:0009409 "response to cold" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0007030 "Golgi organization" evidence=RCA;IMP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=IMP

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2024527 VHA-E3 "AT1G64200" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 131/178 (73%), Positives = 152/178 (85%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct:     1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRD------HNSYKKLL 114
             QV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LL
Sbjct:    61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query:   115 KGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172
             K LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+L
Sbjct:   121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFL 178

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2077893 VHA-E2 "vacuolar H+-ATPase subunit E isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 119/172 (69%), Positives = 151/172 (87%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK K
Sbjct:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             QV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++
Sbjct:    61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172
             SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++L
Sbjct:   121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFL 172

GO:0005634 "nucleus" evidence=ISM

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

FB|FBgn0015324 Vha26 "Vacuolar H[+]-ATPase 26kD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 82/173 (47%), Positives = 123/173 (71%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             QVE++KKI+ S  LN +R+KVL+ ++D VS++++ A K +  V+++ + Y+ +L  LIVQ
Sbjct:    63 QVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLIVQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP-EIIVDHHIYL 172
              L ++ EP V+LRCR+ D  LV +VL +A E+Y  K Q++   E+ +D   +L
Sbjct:   123 GLFQIMEPKVILRCREVDVPLVRNVLPAAVEQY--KAQINQNVELFIDEKDFL 173

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P11019 ATP6V1E1 "V-type proton ATPase subunit E 1" [Bos taurus (taxid:9913)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYL 172
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDV---DVQIDQEAYL 173

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|Q58DR7 ATP6V1E1 "ATPase, H+ transporting, lysosomal 31kD, V1 subunit E isoform 1" [Bos taurus (taxid:9913)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYL 172
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDV---DVQIDQEAYL 173

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

MGI|MGI:894326 Atp6v1e1 "ATPase, H+ transporting, lysosomal V1 subunit E1" [Mus musculus (taxid:10090)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYL 172
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQEAYL 173

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IGI

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IGI

GO:0015992 "proton transport" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|E2R1R4 ATP6V1E1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYL 172
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQESYL 173

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|P36543 ATP6V1E1 "V-type proton ATPase subunit E 1" [Homo sapiens (taxid:9606)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYL 172
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDV---DVQIDQESYL 173

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0016469 "proton-transporting two-sector ATPase complex" evidence=TAS

GO:0015992 "proton transport" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

UNIPROTKB|F1SHR3 ATP6V1E1 "V-type proton ATPase subunit E 1" [Sus scrofa (taxid:9823)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYL 172
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDV---DVQIDQEAYL 173

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40272	VATE_MESCR	No assigned EC number	0.7526	0.9946	0.8185	N/A	no
O23948	VATE_GOSHI	No assigned EC number	0.8125	0.9838	0.7721	N/A	no
Q39258	VATE1_ARATH	No assigned EC number	0.7486	0.9838	0.7956	yes	no
Q9SWE7	VATE_CITLI	No assigned EC number	0.9892	1.0	0.8086	N/A	no
Q41396	VATE_SPIOL	No assigned EC number	0.7978	0.9784	0.7947	N/A	no
Q9MB46	VATE_CITUN	No assigned EC number	0.9946	1.0	0.8086	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
pfam01991	195	pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) su	2e-53
COG1390	194	COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su	4e-14
PRK03963	198	PRK03963, PRK03963, V-type ATP synthase subunit E;	8e-04
PRK02292	188	PRK02292, PRK02292, V-type ATP synthase subunit E;	0.004

>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit

 Score =  168 bits (427), Expect = 2e-53
 Identities = 76/152 (50%), Positives = 104/152 (68%)

Query: 16  FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLN 75
           FIRQEAEEKA EI   AEEEF IEK + VE  +KKI + YE+KEKQ E+ K+I  S   N
Sbjct: 1   FIRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKN 60

Query: 76  ASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCR 135
            +R+KVL A+++L+ ++ E A + + N+S D + YK LLK LI Q+L++L EP V++R R
Sbjct: 61  EARLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDLLKDLIKQALVKLGEPKVIVRSR 120

Query: 136 KDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 167
           ++D  LV+S L+ AKEEY +K      E I D
Sbjct: 121 EEDEELVKSALDEAKEEYKEKTGKDTVETIGD 152

This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit. Length = 195

>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

 Score = 67.0 bits (164), Expect = 4e-14
 Identities = 36/141 (25%), Positives = 79/141 (56%), Gaps = 2/141 (1%)

Query: 10  IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE 69
           ++++++ I +EAEE+A EI   A EE    K +     ++ I +   + EK+ E  ++  
Sbjct: 4   LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRI 63

Query: 70  YSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPA 129
            S  L  +R K+L+A+++++ ++ EA  +++ N++ D     + L+ L++++L +L    
Sbjct: 64  ISSALLEARRKLLEAKEEILESVFEAVEEKLRNIASD--PEYESLQELLIEALEKLLGGE 121

Query: 130 VLLRCRKDDHHLVESVLESAK 150
           +++   + D  LVE +L   K
Sbjct: 122 LVVYLNEKDKALVEQILRELK 142

Length = 194

>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 6/144 (4%)

Query: 11  QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY--ERKEKQVEIRKKI 68
           + +++ I +EAE+K   I   A++E   EK++    ++ + + E+   + + Q E+ K+ 
Sbjct: 5   ELIIQEINREAEQKIEYILEEAQKE--AEKIKEEARKRAESKAEWILRKAKTQAELEKQR 62

Query: 69  EYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP 128
             +      R K L  Q++L+S ++EA  + +  +  D   Y + LK L  +++  L E 
Sbjct: 63  IIANAKLEVRRKRLAVQEELISEVLEAVRERLAELPEDE--YFETLKALTKEAVEELGED 120

Query: 129 AVLLRCRKDDHHLVESVLESAKEE 152
            V++R  +    L++S LE  ++E
Sbjct: 121 KVVVRSNERTLKLIDSRLEEIRDE 144

Length = 198

>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 22/153 (14%)

Query: 5   DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK-EKQVE 63
           D+  + +     IR EA+E+A EI   AE             + ++I ++ E + E+++E
Sbjct: 9   DIRDEARARASEIRAEADEEAEEIIAEAEA------------DAEEILEDREAEAEREIE 56

Query: 64  -IRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSL 122
            +R++   S +L A R + L A+ +++ ++      E+ ++  D    ++L K L+  + 
Sbjct: 57  QLREQELSSAKLEAKRER-LNARKEVLEDVRNQVEDEIASLDGDKR--EELTKSLLDAA- 112

Query: 123 LRLKEPAVLLRCRKDDHHLVESVLESAKE-EYA 154
                  V +  RKDD  LV+S+L      EYA
Sbjct: 113 ---DADGVRVYSRKDDEDLVKSLLSDYDGLEYA 142

Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
KOG1664	220	consensus Vacuolar H+-ATPase V1 sector, subunit E	100.0
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	99.87
PRK03963	198	V-type ATP synthase subunit E; Provisional	99.82
PRK01194	185	V-type ATP synthase subunit E; Provisional	99.8
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	99.8
PRK02292	188	V-type ATP synthase subunit E; Provisional	99.68
PRK01558	198	V-type ATP synthase subunit E; Provisional	99.23
PRK01005	207	V-type ATP synthase subunit E; Provisional	98.64
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	98.15
PRK09098	233	type III secretion system protein HrpB; Validated	98.01
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	98.01
PRK06937	204	type III secretion system protein; Reviewed	97.9
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	97.81
PRK06328	223	type III secretion system protein; Validated	97.62
PRK08475	167	F0F1 ATP synthase subunit B; Validated	97.25
PRK06669	281	fliH flagellar assembly protein H; Validated	97.24
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	96.43
PF06635	207	NolV: Nodulation protein NolV; InterPro: IPR010586	95.53
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	94.32
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	93.98
PRK13386	236	fliH flagellar assembly protein H; Provisional	93.86
PRK07352	174	F0F1 ATP synthase subunit B; Validated	93.72
PRK08404	103	V-type ATP synthase subunit H; Validated	93.27
PRK06231	205	F0F1 ATP synthase subunit B; Validated	92.8
CHL00019	184	atpF ATP synthase CF0 B subunit	92.7
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	92.39
PRK03963	198	V-type ATP synthase subunit E; Provisional	92.39
PRK01194	185	V-type ATP synthase subunit E; Provisional	91.28
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	90.58
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	90.46
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	90.18
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	88.22
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	88.17
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	88.15
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	87.35
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	86.71
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	86.51
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	86.47
PRK12704	520	phosphodiesterase; Provisional	86.11
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	84.98
PRK05687	246	fliH flagellar assembly protein H; Validated	84.96
PRK01558	198	V-type ATP synthase subunit E; Provisional	84.42
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	82.62
PRK00106	535	hypothetical protein; Provisional	82.21
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	81.79
PRK05759	156	F0F1 ATP synthase subunit B; Validated	81.44
PRK00106	535	hypothetical protein; Provisional	80.96
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	80.93
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	80.61
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	80.29

>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]

Probab=100.00  E-value=1.9e-56  Score=368.97  Aligned_cols=177  Identities=55%  Similarity=0.797  Sum_probs=174.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q 029859            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (186)
Q Consensus         1 m~d~ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~   80 (186)
                      |||++|++||+||++||+|||+|||+||.++|+|||||||++||++++.+|+..|++|+||++++++|+.|+.+|++||+
T Consensus         1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK   80 (220)
T KOG1664|consen    1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK   80 (220)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029859           81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  160 (186)
Q Consensus        81 ~L~aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~  160 (186)
                      +|++|+++|+.+|++|+++|..++.|++.|+.+|++||+|||++|+||.|+||||+.|+.+|++++++|..+|...+|..
T Consensus        81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~~  160 (220)
T KOG1664|consen   81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGVG  160 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCeEeeccCCCCCCCCCC
Q 029859          161 PPEIIVDHHIYLPPGPGH  178 (186)
Q Consensus       161 ~~~i~id~~~~L~~~~~~  178 (186)
                       +.+.+|++.|||++..+
T Consensus       161 -~e~~id~~~fL~~~~~G  177 (220)
T KOG1664|consen  161 -VEVQIDKKDFLPPDVAG  177 (220)
T ss_pred             -ceeeechhccCCccccC
Confidence             89999999999997644

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.87  E-value=1.2e-21  Score=159.10  Aligned_cols=157  Identities=32%  Similarity=0.404  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (186)
Q Consensus        16 FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~   95 (186)
                      ||.++|+.+|++|..+|+++++-.+.....+....+...+++..++++..+....|...+.+|..+|.+|+++|+++|+.
T Consensus         1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~   80 (198)
T PF01991_consen    1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE   80 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccCCCCC
Q 029859           96 ASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP  173 (186)
Q Consensus        96 a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~  173 (186)
                      ++++|..++.+++.|+.+|.+||.+++..+.+++++|+|++.|.++|+++++.+...|....|..++.+..|+ .||+
T Consensus        81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~  157 (198)
T PF01991_consen   81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DYLI  157 (198)
T ss_dssp             HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T----B
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-cccC
Confidence            9999999998877899999999999999999999999999999999999999999999887776644455554 4553

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=99.82  E-value=9e-18  Score=137.92  Aligned_cols=150  Identities=25%  Similarity=0.314  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 029859           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (186)
Q Consensus        10 i~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i   89 (186)
                      +..++.-|..+|+.+|++|...|..+.+-.......+........-++...++++.++...|+..+++|+++|.+|++++
T Consensus         4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~   83 (198)
T PRK03963          4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELI   83 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999984444444444444445557777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Q 029859           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD  167 (186)
Q Consensus        90 ~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id  167 (186)
                      +.+|+.|+++|.+++.+  .|+.+|.+||.+|+..|++++++|+|++.|..+|++.++.+.+.    +| . +++.++
T Consensus        84 ~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~~----~~-~-~~i~~~  153 (198)
T PRK03963         84 SEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDE----LG-D-VEIELG  153 (198)
T ss_pred             HHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHH----hC-C-eEEEEC
Confidence            99999999999999877  89999999999999999999999999999999999998877644    44 2 466665

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=99.80  E-value=4.1e-18  Score=140.15  Aligned_cols=129  Identities=15%  Similarity=0.303  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 029859           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKI---RQEY-ERKEKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (186)
Q Consensus        10 i~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI---~~~~-ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aR   85 (186)
                      +..++.-|.++|+.+|++|...|+.+.+    .|+.....+.   ...| ++..++++..++...|+..-.+|+++|++|
T Consensus         3 le~i~~~I~~ea~~~a~~I~~eA~~~ae----ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~ar   78 (185)
T PRK01194          3 LEDVIKDIEKSREEKKKEINDEYSKRIE----KLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKR   78 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5678889999999999999999999988    7777755554   4444 455567777777788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHH
Q 029859           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVES  144 (186)
Q Consensus        86 e~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~  144 (186)
                      +++|+++|+.|+++|.++++++ .|+++|++||.+|+.. ++|+++|+||+.|..+|++
T Consensus        79 ee~I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~-l~~~~~v~~~~~D~~~i~~  135 (185)
T PRK01194         79 REILKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKT-LGEDCIIKVSESDKKKINN  135 (185)
T ss_pred             HHHHHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHh-cCCCeEEEEcHHhHHHHHh
Confidence            9999999999999999999766 8999999999999999 7799999999999999976

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=99.80  E-value=1.3e-17  Score=138.54  Aligned_cols=138  Identities=26%  Similarity=0.411  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 029859            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL   88 (186)
Q Consensus         9 qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~   88 (186)
                      .+..|++||.++|+++|++|...|.++++..+.+.+......+...+.+.++++++.++...|++.+++|..+|.+++++
T Consensus         3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~   82 (194)
T COG1390           3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI   82 (194)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHH
Q 029859           89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES  148 (186)
Q Consensus        89 i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~  148 (186)
                      |+.+|+.+.++|..+++++. |.. |..|+.+++.++.+++++|++++.|.++|.+++.+
T Consensus        83 l~~~~~~~~e~L~~i~~~~~-~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~  140 (194)
T COG1390          83 LESVFEAVEEKLRNIASDPE-YES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILRE  140 (194)
T ss_pred             HHHHHHHHHHHHHcCcCCcc-hHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhh
Confidence            99999999999999999974 444 99999999999999999999999999998888776

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=99.68  E-value=5.3e-15  Score=120.83  Aligned_cols=130  Identities=25%  Similarity=0.385  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 029859           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK---IRQEY-ERKEKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (186)
Q Consensus        10 i~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~k---I~~~~-ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aR   85 (186)
                      +..++.-|.++|+.+|++|...|+.+..    .++.+...+   |...+ .+-.+++..-.+...|...+.+|..+|.+|
T Consensus         3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~----~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r   78 (188)
T PRK02292          3 LETVVEDIRDEARARASEIRAEADEEAE----EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR   78 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778899999999999999999999988    888887766   44444 344445555577889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHH
Q 029859           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESA  149 (186)
Q Consensus        86 e~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~  149 (186)
                      +++|+++|+.|+++|..++.+  .|..+|.+||.+|    .+++++|+|++.|..+|++++..+
T Consensus        79 ~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~~  136 (188)
T PRK02292         79 KEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSDY  136 (188)
T ss_pred             HHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHhc
Confidence            999999999999999999876  8999999999999    678999999999999999988765

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=99.23  E-value=4.1e-09  Score=87.56  Aligned_cols=137  Identities=22%  Similarity=0.245  Sum_probs=119.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 029859            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL   82 (186)
Q Consensus         3 d~ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L   82 (186)
                      +++++.=+.+|..=|..+|+.+|.+|...|+++.+    +|+.+.+.+.....++-.++++..+++..|+.....|..+|
T Consensus         2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe----~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll   77 (198)
T PRK01558          2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAE----EIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI   77 (198)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999    99999999988888999999998899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHH
Q 029859           83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLE  147 (186)
Q Consensus        83 ~aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~  147 (186)
                      .+++.+++.+.+.+.+.+.... +++.|..++..|+....   .++++.|+.++.|...+...+.
T Consensus        78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~  138 (198)
T PRK01558         78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILR  138 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHH
Confidence            9999999866555555556444 66789999999999864   6678999999999888877543

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=98.64  E-value=3.6e-06  Score=70.80  Aligned_cols=115  Identities=14%  Similarity=0.160  Sum_probs=101.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 029859            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL   82 (186)
Q Consensus         3 d~ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L   82 (186)
                      ++.++.=+++|..-|..+|+.+|.+|...|..+.+    .|+.+.+.+....-+.-.++++..++...|+..-.+|..+|
T Consensus         7 ~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l   82 (207)
T PRK01005          7 QDKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLE   82 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677778899999999999999999999999998    79999999999989999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhc
Q 029859           83 QAQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRL  125 (186)
Q Consensus        83 ~aRe~~i~~l~~~a~~kL~~~-~~~~~~Y~~lLk~LI~qgl~~L  125 (186)
                      .++.++++.+|..+.++|..- ..|+    ++|..||+.-+-..
T Consensus        83 ~aKqevi~~vf~~a~~~lv~~~~~d~----~~l~~lI~~~v~~~  122 (207)
T PRK01005         83 SLKQAVENKIFRESLGEWLEHVLTDP----EVSAKLIQALVQAI  122 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHH
Confidence            999999999999999999875 4465    67777777555444

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=98.15  E-value=0.0002  Score=59.43  Aligned_cols=138  Identities=22%  Similarity=0.319  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (186)
Q Consensus        14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~   93 (186)
                      -.-|...|+.+|+.|-..|+++++    .++.+....+.+.|-......-        ...-..|-.....-.+....++
T Consensus        32 a~~IL~~A~~qA~~Il~~Ae~eAe----~l~~~a~e~a~~~~~q~a~~ll--------~~~~~~~e~l~~~l~~~~~~ll   99 (191)
T PF06188_consen   32 AREILEDARQQAEQILQQAEEEAE----ALLEQAYEQAEAQFWQQANALL--------QEWQQQREQLLQQLEEQAEELL   99 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999    8888777777666644332211        1111223455555677778888


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccCCCCC
Q 029859           94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP  173 (186)
Q Consensus        94 ~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~  173 (186)
                      ..|-.+|..-..++.++..+++.|..+   ...++.++++|...+.+-|...|.+-...        ...+.-|  ..|+
T Consensus       100 ~~al~~lL~e~~~~qrv~aLlr~l~~~---~~~~~~~tL~~hP~~~~~V~~~L~~~~~~--------~w~l~~D--~sl~  166 (191)
T PF06188_consen  100 SQALERLLDETPDQQRVAALLRQLLAS---QRQESEATLRCHPDQLEEVAAWLAEHPAL--------HWQLQAD--ESLA  166 (191)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHh---cccccceEEEECHHHHHHHHHHHHhCCCc--------ceeeccC--CCCC
Confidence            888888888777777888888888755   35778999999999999998777663311        1344444  6677


Q ss_pred             CCC
Q 029859          174 PGP  176 (186)
Q Consensus       174 ~~~  176 (186)
                      ++.
T Consensus       167 ~~~  169 (191)
T PF06188_consen  167 PDQ  169 (191)
T ss_pred             CCc
Confidence            775

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK09098 type III secretion system protein HrpB; Validated

Probab=98.01  E-value=0.0035  Score=53.54  Aligned_cols=145  Identities=18%  Similarity=0.134  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHH-HhHHHHHHHHHHH
Q 029859            6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR--KKIE-YSMQLNASRIKVL   82 (186)
Q Consensus         6 v~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~--k~I~-~S~~~n~~Rl~~L   82 (186)
                      +-.+-+..-.-|..+|++.|++|...|.++|+-.+.           .-|.....+...+  .++. .....+..+   .
T Consensus        44 ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~-----------~Gy~eG~~~a~~e~~~~~~~~~~~~~~~~---~  109 (233)
T PRK09098         44 VLAAARARAERIVAEARAQAEAILEAARREADRSAR-----------RGYAAGLRQALAEWHARGADHAFAERRAA---R  109 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            344445555566667777777777777777763332           2333333322222  1122 111222222   2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC--CCceEEeeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029859           83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  160 (186)
Q Consensus        83 ~aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~--e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~  160 (186)
                      ..++++++=++..+++-+...  |+    ..|-..+.+++..+.  .+.|+|++...|+++|...+......    .|..
T Consensus       110 ~~e~~Lv~lv~~~v~kiv~~~--d~----~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~----~g~~  179 (233)
T PRK09098        110 RMRERLAEIVAAAVEQIVLGE--DR----AALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAA----GGRN  179 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CH----HHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHh----cCCC
Confidence            247788888888888777542  43    456678889998864  46899999999999999887776554    3332


Q ss_pred             CCeEeeccCCCCCCC
Q 029859          161 PPEIIVDHHIYLPPG  175 (186)
Q Consensus       161 ~~~i~id~~~~L~~~  175 (186)
                       ..+.|-.+..|+++
T Consensus       180 -~~l~Iv~Dp~L~~G  193 (233)
T PRK09098        180 -VPVEVVGDPRLAPG  193 (233)
T ss_pred             -cceEEEeCCCCCCC
Confidence             23333333556544

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=98.01  E-value=0.00089  Score=52.94  Aligned_cols=121  Identities=17%  Similarity=0.149  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (186)
Q Consensus        14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~   93 (186)
                      -.-|..+|+.+|+.|...|+++++-.+..-.++....-..++.......            ...+-+.+..=+.-+-.+.
T Consensus        15 A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~------------~~~~~~~~~~~e~~l~~l~   82 (166)
T TIGR02499        15 AQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEW------------QQEAEQLEASLEERLAELV   82 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence            4568899999999999999999986655444444333332222211111            1111111111122222333


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CceEEeeccccHHHHHHHHHHHH
Q 029859           94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAK  150 (186)
Q Consensus        94 ~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e-~~v~V~~rk~D~~lV~~~l~~~~  150 (186)
                      -.+-+++..-.    ....++..++.+++-.+.+ +.++|+|...|++.|...+.+..
T Consensus        83 ~~~~~kil~~~----~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~  136 (166)
T TIGR02499        83 LQALEQILGEY----DEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERL  136 (166)
T ss_pred             HHHHHHHhCCC----CCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHh
Confidence            33333333322    3457888888898888887 69999999999999998877654

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>PRK06937 type III secretion system protein; Reviewed

Probab=97.90  E-value=0.0018  Score=53.74  Aligned_cols=137  Identities=17%  Similarity=0.225  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR--KKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (186)
Q Consensus        16 FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~--k~I~~S~~~n~~Rl~~L~aRe~~i~~l~   93 (186)
                      -|..+|++.|++|...|+++|+-.+           ..-|+....+...+  .++..+  ..+..--.-....++++=++
T Consensus        34 ~il~~A~~~A~~i~~~A~~~~e~~~-----------~~Gy~~G~~~a~~e~~e~l~~~--~~~~~~~~~~~e~~l~~Lvl  100 (204)
T PRK06937         34 ELVEAARQRAEEIEAEAQEVYEQQK-----------QLGYQAGLDEARTEQAELILET--VLQCQEFYRGVEQQMSEVVL  100 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            4778999999999999999998433           23444333333322  223222  12222122344556666566


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccCCCC
Q 029859           94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL  172 (186)
Q Consensus        94 ~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e-~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L  172 (186)
                      .-|++=|...  +   -..++..++.+++..+.+ +.|+|++.+.|++.|.+.++.....|.   |...+.|..|  ..|
T Consensus       101 ~ia~kil~~~--~---~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~---~~~~l~i~~D--~~L  170 (204)
T PRK06937        101 EAVRKILNDY--D---DVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFP---EVGYLEVVAD--ARL  170 (204)
T ss_pred             HHHHHHHhcc--C---cHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCC---CCccEEEEeC--CCC
Confidence            6555555433  1   247888999999998876 599999999999999998877766553   2221344444  455


Q ss_pred             CCC
Q 029859          173 PPG  175 (186)
Q Consensus       173 ~~~  175 (186)
                      +++
T Consensus       171 ~~G  173 (204)
T PRK06937        171 DQG  173 (204)
T ss_pred             CCC
Confidence            544

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=97.81  E-value=0.0095  Score=51.15  Aligned_cols=66  Identities=17%  Similarity=0.114  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC-CceEEeeccccHHHHHHHHHHHHHHH
Q 029859           84 AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEY  153 (186)
Q Consensus        84 aRe~~i~~l~~~a~~kL~~~-~~~~~~Y~~lLk~LI~qgl~~L~e-~~v~V~~rk~D~~lV~~~l~~~~~~y  153 (186)
                      .+.++++=++.-|++=|... ..++    ..+..||.+++-.+.+ +.|+|+|.+.|++.|....+.+...+
T Consensus       134 ~e~el~~La~~iAeKIi~~el~~~~----e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v~~~~~~l~~~~  201 (255)
T TIGR03825       134 AQPLIIELACALAEKVIGVSLAEDK----NAFQALVRQVLSEVREFDEVSIYVHPHWYERVAAQKDELQSIL  201 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHHHhccCCCcEEEEECHHHHHHHHHhHHHHHhhc
Confidence            34555555566555555543 3443    5689999999999987 58999999999999998877666554

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK06328 type III secretion system protein; Validated

Probab=97.62  E-value=0.011  Score=50.10  Aligned_cols=140  Identities=17%  Similarity=0.216  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (186)
Q Consensus        16 FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~   95 (186)
                      -|...|++.|++|...|.++++    ++-++...   +-|+....+..  ..+.  ...+....-.-..+.++++=++.-
T Consensus        33 ~il~~a~~~ae~i~~ea~~e~E----~i~eeA~~---eGy~eG~~~~~--~~~~--~l~~~~~~~~~~~e~~lv~Lal~i  101 (223)
T PRK06328         33 ELLEKTKEDSEAYTQETHEECE----KLREEAKN---QGFKEGSKAWS--KQLA--FLEEETQKLREQVKEALVPLAIAS  101 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667788888888888888887    55544432   33444443321  1111  112222111123345677767777


Q ss_pred             HHHHHHh-hccChhHHHHHHHHHHHHHHHhcCCC-ceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccCCCCC
Q 029859           96 ASKEVLN-VSRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP  173 (186)
Q Consensus        96 a~~kL~~-~~~~~~~Y~~lLk~LI~qgl~~L~e~-~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~  173 (186)
                      |++=+.. +..|+    ..+..+|.+||-.+.+. .|+|+|...|+++|+...++....+...   ..+.|..|  ..|+
T Consensus       102 a~kVi~~el~~d~----e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~---~~~~I~~D--~~L~  172 (223)
T PRK06328        102 VKKIIGKELELHP----ETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYA---DSLIISPK--ADVT  172 (223)
T ss_pred             HHHHHHHHHhhCH----HHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCC---CceEEEeC--CCCC
Confidence            7666654 33343    67779999999888764 8999999999999998776665554322   22345444  5565


Q ss_pred             CC
Q 029859          174 PG  175 (186)
Q Consensus       174 ~~  175 (186)
                      ++
T Consensus       173 ~G  174 (223)
T PRK06328        173 PG  174 (223)
T ss_pred             CC
Confidence            54

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=97.25  E-value=0.01  Score=48.06  Aligned_cols=88  Identities=19%  Similarity=0.243  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 029859           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN   91 (186)
Q Consensus        12 kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~   91 (186)
                      .=..-+..+|+.+|.+|...|..+.+.++..++.+.+.......++....++.           +.+.-+...|.+++++
T Consensus        77 ~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~-----------Ek~~a~~elk~eii~~  145 (167)
T PRK08475         77 EDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEF-----------EVRKMEREVVEEVLNE  145 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence            33456778899999999999999999888888888877777655555555444           4444577889999999


Q ss_pred             HHHHHHHHHHhhccChhHHHHHHH
Q 029859           92 MMEAASKEVLNVSRDHNSYKKLLK  115 (186)
Q Consensus        92 l~~~a~~kL~~~~~~~~~Y~~lLk  115 (186)
                      +|+.   +|.+++.+  .|-.++.
T Consensus       146 ~~~~---~~~~l~~~--~y~~~~~  164 (167)
T PRK08475        146 LFES---KKVSLNQQ--EYVNILL  164 (167)
T ss_pred             HHHh---hhcCCCHH--HHHHHHh
Confidence            9999   77777654  7988774

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=97.24  E-value=0.12  Score=44.92  Aligned_cols=84  Identities=17%  Similarity=0.273  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCC
Q 029859           84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP  162 (186)
Q Consensus        84 aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e-~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~  162 (186)
                      ...++++-++.-|++=|..+..+   .+.++..||.+++-.+.+ +.|+|++...|+++++..+++....+...   ..+
T Consensus       164 ~e~elv~Lal~iaekvi~~~~~~---~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l~~~---~~i  237 (281)
T PRK06669        164 SEEEIVELALDIAKKVIKEISEN---SKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLLDNE---EHL  237 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhcCCC---CCe
Confidence            55667777777777666444433   457889999999999877 58999999999999999877777665322   224


Q ss_pred             eEeeccCCCCCCC
Q 029859          163 EIIVDHHIYLPPG  175 (186)
Q Consensus       163 ~i~id~~~~L~~~  175 (186)
                      .|..|  ..|+++
T Consensus       238 ~I~~D--~~l~~G  248 (281)
T PRK06669        238 KIYED--DAISKG  248 (281)
T ss_pred             EEEEC--CCCCCC
Confidence            55555  455553

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.43  E-value=0.51  Score=40.39  Aligned_cols=137  Identities=14%  Similarity=0.144  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHhHHHHHHHH-
Q 029859            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK--IEYSMQLNASRI-   79 (186)
Q Consensus         3 d~ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~--I~~S~~~n~~Rl-   79 (186)
                      +++....+.++..++...+.+.++.|...+++-|+    ..++.....       ..++.....+  -..++.++.... 
T Consensus        39 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~e----eg~q~G~~e-------G~~~g~~~~~~~e~~~~li~~~~~~  107 (234)
T COG1317          39 EEELEQALEAKEEELESAAQELQEGIEEGAREGYE----EGFQLGYEE-------GFEEGQEEGRVLERLAKLIAEFQAE  107 (234)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788889999999999999999999999988    554444433       2222221110  111222222221 


Q ss_pred             -HHH--HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCC--ceEEeeccccHHHHHHHHHHHHHHH
Q 029859           80 -KVL--QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP--AVLLRCRKDDHHLVESVLESAKEEY  153 (186)
Q Consensus        80 -~~L--~aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~--~v~V~~rk~D~~lV~~~l~~~~~~y  153 (186)
                       .-|  ....++++-++.-|++=|......   -+..|-.+|.++|..+...  .++++|...|++.|+..++......
T Consensus       108 ~~~~~~~~e~qLv~lvl~ia~~Vi~~~~~~---~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~~~  183 (234)
T COG1317         108 LEALKEVVEKQLVQLVLEIARKVIGKELEL---DPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELSLL  183 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHhc---CHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHhhc
Confidence             111  234566666677676666654433   3478999999999887654  7999999999999999988655543

>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []

Probab=95.53  E-value=1.3  Score=37.55  Aligned_cols=138  Identities=17%  Similarity=0.174  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA   96 (186)
Q Consensus        17 I~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a   96 (186)
                      +...|+.-|..|...|...|+-++.+=.+.....=         -.++-+.|...+.--..++..|.  .++.+=+++-+
T Consensus        35 ~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g---------~e~~A~llaqa~a~v~r~~a~LE--~~l~~LVl~~V  103 (207)
T PF06635_consen   35 FLAAARREAQRIREWARAAYERERARGYEEGRRAG---------AEQAARLLAQATAEVARYLAGLE--QELAELVLEIV  103 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            45678999999999999999977665444433211         11223445555555555555555  67777788888


Q ss_pred             HHHHHhhccChhHHHHHHHHHHHHHHHhcCCC-ceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccCCCCCCC
Q 029859           97 SKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG  175 (186)
Q Consensus        97 ~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~-~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~~~  175 (186)
                      ++=|..+..+     ++|...+.+++..+..+ .|+|++-..|++.+...+..+. .|   .|.+  ++.|..+.-|+++
T Consensus       104 r~ILg~fd~~-----ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~~-~~---~g~~--~i~I~aDp~La~~  172 (207)
T PF06635_consen  104 RKILGEFDPD-----ELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAALE-GR---PGRP--KIRIVADPRLAAG  172 (207)
T ss_pred             HHHHhcCChH-----HHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhhh-cc---CCCC--ceeeecCCCCCCC
Confidence            7777777655     78888899999988877 8999999999999998887663 22   3554  5555555677766


Q ss_pred             C
Q 029859          176 P  176 (186)
Q Consensus       176 ~  176 (186)
                      .
T Consensus       173 ~  173 (207)
T PF06635_consen  173 Q  173 (207)
T ss_pred             C
Confidence            4

The function of this family is unclear.; GO: 0009877 nodulation

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=94.32  E-value=2.9  Score=35.84  Aligned_cols=39  Identities=10%  Similarity=0.152  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHH
Q 029859          110 YKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY  153 (186)
Q Consensus       110 Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y  153 (186)
                      ...-|.+|.+....++....+     ..|-+.+..++.++....
T Consensus       134 ~e~el~~La~~iAeKIi~~el-----~~~~e~i~~lv~~al~~l  172 (255)
T TIGR03825       134 AQPLIIELACALAEKVIGVSL-----AEDKNAFQALVRQVLSEV  172 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhc
Confidence            456677888888887765443     234445556666555543

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=93.98  E-value=3.5  Score=35.13  Aligned_cols=92  Identities=11%  Similarity=0.194  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (186)
Q Consensus        15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~   94 (186)
                      .-..++|+..|.+|...|..+...++..++.+.+..+....++....++.+++-...           ..|.++.+-.+.
T Consensus        63 e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~-----------~l~~ei~~la~~  131 (246)
T TIGR03321        63 EEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSD-----------ELRRRTGAEVFA  131 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            345668899999999999999999999999999998888777777777766544433           335555666666


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHH
Q 029859           95 AASKEVLNVSRDHNSYKKLLKGLI  118 (186)
Q Consensus        95 ~a~~kL~~~~~~~~~Y~~lLk~LI  118 (186)
                      -|.+-|.... |+...+.++...|
T Consensus       132 ~A~kil~~~~-d~~~~~~lid~~i  154 (246)
T TIGR03321       132 IARKVLTDLA-DTDLEERMVDVFV  154 (246)
T ss_pred             HHHHHHHHhc-ChHHHHHHHHHHH
Confidence            6666665543 3334445555544

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=93.86  E-value=2.8  Score=35.78  Aligned_cols=61  Identities=8%  Similarity=0.197  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHh-hccChhHHHHHHHHHHHHHHHhcCC--CceEEeeccccHHHHHHHHHH
Q 029859           84 AQDDLVSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRKDDHHLVESVLES  148 (186)
Q Consensus        84 aRe~~i~~l~~~a~~kL~~-~~~~~~~Y~~lLk~LI~qgl~~L~e--~~v~V~~rk~D~~lV~~~l~~  148 (186)
                      .++.+|+-++.-|++=+.. +..|+    ..+..+|.++|-.|..  +.|+|+|+..|+++|+..+++
T Consensus       120 ~~~~ll~La~~iA~~vi~~el~~~p----~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e  183 (236)
T PRK13386        120 QRDELLDLVEKVTRQVIRCELTLQP----QQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPE  183 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhc
Confidence            3556666666666655554 24444    5677999999999954  589999999999999987765

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=93.72  E-value=3  Score=33.56  Aligned_cols=92  Identities=10%  Similarity=0.144  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (186)
Q Consensus        15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~   94 (186)
                      .-..++|+.+|.+|...|..+.+.++..++.+....+....+.....++.+++-.           .-..|.++.+-.+.
T Consensus        77 ~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a-----------~~~l~~qi~~la~~  145 (174)
T PRK07352         77 QQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERV-----------IAQLRREAAELAIA  145 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            3456788888999999999998888888888887777776666666665544333           23345667777777


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHH
Q 029859           95 AASKEVLNVSRDHNSYKKLLKGLI  118 (186)
Q Consensus        95 ~a~~kL~~~~~~~~~Y~~lLk~LI  118 (186)
                      -|.+-|..-. |+.....++..+|
T Consensus       146 ~A~kil~~~l-~~~~~~~li~~~i  168 (174)
T PRK07352        146 KAESQLPGRL-DEDAQQRLIDRSI  168 (174)
T ss_pred             HHHHHHHhHc-CHHHHHHHHHHHH
Confidence            7777777654 3334555555544

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=93.27  E-value=2.7  Score=31.55  Aligned_cols=61  Identities=20%  Similarity=0.165  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 029859           17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNAS   77 (186)
Q Consensus        17 I~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~   77 (186)
                      +.++|+.+|.+|...|..+.+-.+..++.+.........++-.+.++..+.-..+...++.
T Consensus        18 ~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~ei   78 (103)
T PRK08404         18 RIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEI   78 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666666666665555555666665555555555555555544444444433333

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=92.80  E-value=5.1  Score=33.49  Aligned_cols=93  Identities=20%  Similarity=0.136  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (186)
Q Consensus        14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~   93 (186)
                      ..-..++|+.+|.+|...|.++.+.++..++.+.+..+....+....+++.+++-..           -..|.++.+-..
T Consensus       105 ~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~-----------~~Lk~ei~~lAv  173 (205)
T PRK06231        105 AKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELK-----------EQLQKESVELAM  173 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            345677888888888888888888888888887777766655555555554443332           223444455555


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHH
Q 029859           94 EAASKEVLNVSRDHNSYKKLLKGLI  118 (186)
Q Consensus        94 ~~a~~kL~~~~~~~~~Y~~lLk~LI  118 (186)
                      .-|.+-|.+-. |+...+.++...|
T Consensus       174 ~iA~kiL~k~l-d~~~~~~lI~~~i  197 (205)
T PRK06231        174 LAAEELIKKKV-DREDDDKLVDEFI  197 (205)
T ss_pred             HHHHHHHHhhC-CHHHHHHHHHHHH
Confidence            55555554433 3334555555554

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=92.70  E-value=4.7  Score=32.81  Aligned_cols=92  Identities=17%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (186)
Q Consensus        15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~   94 (186)
                      .-+.++|+..|.+|...|..+.+.++..++.+....+....+.-...++.+++-.           .-..|.++.+-.++
T Consensus        82 e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a-----------~~~l~~ei~~lav~  150 (184)
T CHL00019         82 RARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRA-----------INQVRQQVFQLALQ  150 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            3478889999999999999999988889998888888876666666666554433           23445667777777


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHH
Q 029859           95 AASKEVLNVSRDHNSYKKLLKGLI  118 (186)
Q Consensus        95 ~a~~kL~~~~~~~~~Y~~lLk~LI  118 (186)
                      -|.+-|.+.. |++....++...|
T Consensus       151 ~A~kil~~~l-d~~~~~~lid~~i  173 (184)
T CHL00019        151 RALGTLNSCL-NNELHLRTINANI  173 (184)
T ss_pred             HHHHHHHhHc-CHHHHHHHHHHHH
Confidence            7777777754 4434555555544

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=92.39  E-value=9.4  Score=35.57  Aligned_cols=107  Identities=14%  Similarity=0.071  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (186)
Q Consensus        14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~   93 (186)
                      ..-+.++|+.+|.+|...|.++.+-++..++.+....+....+....+++.+++-..           -..|.++.+-.+
T Consensus        58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~-----------~elr~ei~~lAv  126 (445)
T PRK13428         58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLT-----------RQLRLELGHESV  126 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            445677788888888888888888777777777776666666666666554443321           234566667777


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEE
Q 029859           94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLL  132 (186)
Q Consensus        94 ~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V  132 (186)
                      ..|.+-|.+-..++...+.++...| +.+-.+..+...|
T Consensus       127 ~~A~kil~~~l~d~~~~~~lId~~i-~~l~~~~~~~~~~  164 (445)
T PRK13428        127 RQAGELVRNHVADPAQQSATVDRFL-DELDAMAPSTADV  164 (445)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-HHhhccCCCchhh
Confidence            7777777654334333345554444 4555555554333

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=92.39  E-value=5.1  Score=32.58  Aligned_cols=97  Identities=16%  Similarity=0.235  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HhHHHHH
Q 029859            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE--------YSMQLNA   76 (186)
Q Consensus         5 ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~--------~S~~~n~   76 (186)
                      ++..+.+.=..-|..+|+.+|++|...|.++.+.+...++...+..+...-++....+.++.+..        .+...+.
T Consensus        10 ~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~   89 (198)
T PRK03963         10 EINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEA   89 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556677778888888888888888888887778888777666655554444444443322        3334444


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHH
Q 029859           77 SRIKVLQA----QDDLVSNMMEAASKEVL  101 (186)
Q Consensus        77 ~Rl~~L~a----Re~~i~~l~~~a~~kL~  101 (186)
                      ++-++.+.    -..+|..++.++-..|.
T Consensus        90 a~~~l~~~~~~~Y~~~l~~li~~a~~~l~  118 (198)
T PRK03963         90 VRERLAELPEDEYFETLKALTKEAVEELG  118 (198)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHhC
Confidence            55333321    33567777777766664

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=91.28  E-value=7.2  Score=32.00  Aligned_cols=96  Identities=14%  Similarity=0.185  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HhHHHHH
Q 029859            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE--------YSMQLNA   76 (186)
Q Consensus         5 ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~--------~S~~~n~   76 (186)
                      ++.++.++=..-|..+|+.+|++|...|+++.+-.+..+.......+...+++-...+.++.+..        .....+.
T Consensus         9 ~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~   88 (185)
T PRK01194          9 DIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDI   88 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778889999999999999999999999988888888888777777777777666663322        2233444


Q ss_pred             HHHHH--HH---HHHHHHHHHHHHHHHHH
Q 029859           77 SRIKV--LQ---AQDDLVSNMMEAASKEV  100 (186)
Q Consensus        77 ~Rl~~--L~---aRe~~i~~l~~~a~~kL  100 (186)
                      ++-++  |.   ...++|..++..+-..|
T Consensus        89 a~e~L~~l~~~~~Y~~~L~~LI~~a~~~l  117 (185)
T PRK01194         89 AYEHLMNITKSKEYDSILNKMIEVAIKTL  117 (185)
T ss_pred             HHHHHHcccCCchHHHHHHHHHHHHHHhc
Confidence            44333  22   35567777777765553

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=90.58  E-value=7.8  Score=31.17  Aligned_cols=92  Identities=21%  Similarity=0.266  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (186)
Q Consensus        15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~   94 (186)
                      .-..++|+.+|.+|...|..+..-++..++.+....+....+....+++.+++-..           -..|.++.+-.+.
T Consensus        74 e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~-----------~el~~ei~~lA~~  142 (173)
T PRK13460         74 EARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKAL-----------SQLQNQIVEMTIT  142 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence            44567888888888888888888888888887777777665555555554433222           1234555566666


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHH
Q 029859           95 AASKEVLNVSRDHNSYKKLLKGLI  118 (186)
Q Consensus        95 ~a~~kL~~~~~~~~~Y~~lLk~LI  118 (186)
                      -|.+-|..-. |+.....++...|
T Consensus       143 ~a~kil~~~l-~~~~~~~lid~~i  165 (173)
T PRK13460        143 IASKVLEKQL-KKEDYKAFIETEL  165 (173)
T ss_pred             HHHHHHHHHC-CHHHHHHHHHHHH
Confidence            6666665543 3334444444444

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=90.46  E-value=7.9  Score=31.01  Aligned_cols=29  Identities=24%  Similarity=0.272  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           18 RQEAEEKANEISVSAEEEFNIEKLQLVEA   46 (186)
Q Consensus        18 ~qEA~eKA~EI~~kA~eef~iEK~~lv~~   46 (186)
                      ...|+.+|.+|...|.++..-+...++.+
T Consensus        71 L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~   99 (167)
T PRK14475         71 REEAERQAAAMLAAAKADARRMEAEAKEK   99 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555443343333

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=90.18  E-value=6  Score=29.20  Aligned_cols=92  Identities=15%  Similarity=0.244  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASK   98 (186)
Q Consensus        19 qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a~~   98 (186)
                      -+|+..|.+|-.+|...-.    .++.+.+.....+.+.=..+.+        ...+....+.++..+.....+..++..
T Consensus        10 l~AE~eA~~iV~~Ar~~r~----~~lk~Ak~eA~~ei~~~r~~~e--------~~~~~~~~~~~~~~~~~~~~l~~et~~   77 (105)
T PF03179_consen   10 LEAEKEAQEIVEEARKERE----QRLKQAKEEAEKEIEEFRAEAE--------EEFKEKEAEAEGEAEQEAEELEKETEE   77 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHH-S------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccchhHHHHHHHHHHH
Confidence            3677777777777776655    6666666655443322222211        112222335566677788888888888


Q ss_pred             HHHhhccChhHHHHHHHHHHHHHH
Q 029859           99 EVLNVSRDHNSYKKLLKGLIVQSL  122 (186)
Q Consensus        99 kL~~~~~~~~~Y~~lLk~LI~qgl  122 (186)
                      ++..+..+.....+-..++|+..+
T Consensus        78 ~i~~i~~~~~~~~~~vv~~ll~~V  101 (105)
T PF03179_consen   78 KIEEIKKSASKNKDKVVDMLLSRV  101 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHH
Confidence            888886655555555555555544

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=88.22  E-value=11  Score=29.80  Aligned_cols=93  Identities=13%  Similarity=0.143  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (186)
Q Consensus        14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~   93 (186)
                      ..-...+|+.+|.+|...|..+..-++..++.+...+.....+....+++.++.-...           ..|.++.+-.+
T Consensus        65 ~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~-----------~L~~~i~~la~  133 (164)
T PRK14473         65 YEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLS-----------ELKSQIADLVT  133 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence            3456678888888888888888888888888888887777666666666655544332           23445555555


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHH
Q 029859           94 EAASKEVLNVSRDHNSYKKLLKGLI  118 (186)
Q Consensus        94 ~~a~~kL~~~~~~~~~Y~~lLk~LI  118 (186)
                      .-|.+-|..-. |++.+..++...|
T Consensus       134 ~~a~kil~~~l-~~~~~~~li~~~i  157 (164)
T PRK14473        134 LTASRVLGAEL-QARGHDALIAESL  157 (164)
T ss_pred             HHHHHHHHhHc-CHHHHHHHHHHHH
Confidence            55555554432 4445555555544

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=88.17  E-value=16  Score=31.43  Aligned_cols=89  Identities=12%  Similarity=0.196  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS   97 (186)
Q Consensus        18 ~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a~   97 (186)
                      .++|+.++.+|...|..+.+-++.+++.+.+..+....++....++.+++-....           .|.++.+-++.-|+
T Consensus        66 l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~-----------L~~~v~~la~~~A~  134 (250)
T PRK14474         66 QQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKA-----------LQQQTGQQMVKIIR  134 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            4578888888999999999988889999988888887777777777665544333           34556666677777


Q ss_pred             HHHHhhccChhHHHHHHHHHH
Q 029859           98 KEVLNVSRDHNSYKKLLKGLI  118 (186)
Q Consensus        98 ~kL~~~~~~~~~Y~~lLk~LI  118 (186)
                      +-|.+.. |+.....++..+|
T Consensus       135 kiL~~~~-d~~~~~~lid~~i  154 (250)
T PRK14474        135 AALADLA-NATLEQQIVGIFI  154 (250)
T ss_pred             HHHHhhc-CHHHHHHHHHHHH
Confidence            7666654 3334555555555

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=88.15  E-value=7.7  Score=27.74  Aligned_cols=18  Identities=39%  Similarity=0.379  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 029859           20 EAEEKANEISVSAEEEFN   37 (186)
Q Consensus        20 EA~eKA~EI~~kA~eef~   37 (186)
                      +|+.+|.+|...|..+.+
T Consensus        17 ~A~~ea~~Ii~~A~~~A~   34 (85)
T TIGR02926        17 EAEEERKQRIAEAREEAR   34 (85)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=87.35  E-value=14  Score=29.75  Aligned_cols=51  Identities=14%  Similarity=0.209  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 029859           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR   65 (186)
Q Consensus        15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~   65 (186)
                      .-...+|+.+|.+|...|.++.+.++..++.+....+....+....+++.+
T Consensus        76 e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e  126 (175)
T PRK14472         76 RELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQE  126 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777788888888888777777777766666665444444444433

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=86.71  E-value=10  Score=29.03  Aligned_cols=39  Identities=13%  Similarity=0.105  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (186)
Q Consensus        15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~   53 (186)
                      .-...+|+..|.+|...|..+.+-++..++.+....+..
T Consensus        63 e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~  101 (140)
T PRK07353         63 EQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQA  101 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666666666666666655555544

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=86.51  E-value=14  Score=29.09  Aligned_cols=93  Identities=15%  Similarity=0.150  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (186)
Q Consensus        15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~   94 (186)
                      .-...+|+.+|.+|...|..+.+-++..++.+.........+....+++..+.-.           .-..|.++.+-.+.
T Consensus        63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a-----------~~~l~~ei~~lA~~  131 (159)
T PRK13461         63 ERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKA-----------EYEIKNQAVDLAVL  131 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            4566778888888888888888888888888877777765555555555333222           22334455555555


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHHH
Q 029859           95 AASKEVLNVSRDHNSYKKLLKGLIV  119 (186)
Q Consensus        95 ~a~~kL~~~~~~~~~Y~~lLk~LI~  119 (186)
                      -|.+-|.... |+.....++...|.
T Consensus       132 ~a~kil~~~~-~~~~~~~li~~~i~  155 (159)
T PRK13461        132 LSSKALEESI-DESEHRRLIKDFIS  155 (159)
T ss_pred             HHHHHHHhHc-CHHHHHHHHHHHHh
Confidence            5555555543 33345555555443

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=86.47  E-value=10  Score=30.07  Aligned_cols=51  Identities=16%  Similarity=0.061  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 029859           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR   65 (186)
Q Consensus        15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~   65 (186)
                      .-..++|+..|.+|...|.++.+-++..++.+.+.......+....+++.+
T Consensus        80 e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~e  130 (156)
T CHL00118         80 EQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQ  130 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777777777777777776666666666655555444444444433

>PRK12704 phosphodiesterase; Provisional

Probab=86.11  E-value=32  Score=32.80  Aligned_cols=30  Identities=13%  Similarity=0.271  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 029859           77 SRIKVLQAQDDLVSNMMEAASKEVLNVSRD  106 (186)
Q Consensus        77 ~Rl~~L~aRe~~i~~l~~~a~~kL~~~~~~  106 (186)
                      .|.+.|..+..-++.+..+...+|..+++=
T Consensus       121 ~re~eLe~~~~~~~~~~~~~~~~l~~~a~l  150 (520)
T PRK12704        121 QKQQELEKKEEELEELIEEQLQELERISGL  150 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            333455555556666666666667666443

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=84.98  E-value=13  Score=27.38  Aligned_cols=64  Identities=25%  Similarity=0.313  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHh-hccChhHHHHHHHHHHHHHH-HhcC-CCceEEeeccccHHHHHHHHHHHHH
Q 029859           84 AQDDLVSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQSL-LRLK-EPAVLLRCRKDDHHLVESVLESAKE  151 (186)
Q Consensus        84 aRe~~i~~l~~~a~~kL~~-~~~~~~~Y~~lLk~LI~qgl-~~L~-e~~v~V~~rk~D~~lV~~~l~~~~~  151 (186)
                      .+.++++-++.-|++=+.. +..++    ..+..+|.+++ ..+. .+.++|++...|++.++..++....
T Consensus        25 ~~~~l~~l~~~iae~vi~~~l~~~~----~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~   91 (128)
T PF02108_consen   25 LEQELVELALAIAEKVIGRELEEDP----EAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELP   91 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHh
Confidence            5566666666666655553 33333    67778899998 4443 3489999999999999988874433

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=84.96  E-value=22  Score=29.99  Aligned_cols=59  Identities=27%  Similarity=0.266  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcC--CCceEEeeccccHHHHHHHHH
Q 029859           85 QDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLE  147 (186)
Q Consensus        85 Re~~i~~l~~~a~~kL~~~-~~~~~~Y~~lLk~LI~qgl~~L~--e~~v~V~~rk~D~~lV~~~l~  147 (186)
                      +..+++-++.-|++=+..- ..++    ..+..+|.+++-.|.  .+.|+|+|...|+++|+..+.
T Consensus       134 e~~Lv~Lal~ia~~vi~~el~~~~----~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~  195 (246)
T PRK05687        134 ESRLVQLALELARQVIGQELKTDP----SAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLG  195 (246)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCH----HHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHh
Confidence            4455665666665555542 3343    677789999999974  578999999999999999876

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=84.42  E-value=22  Score=29.40  Aligned_cols=42  Identities=31%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859            7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (186)
Q Consensus         7 ~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~   52 (186)
                      -.+-++=..-|..+|+.+|++|..+|+++.+    .|+........
T Consensus        17 ~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe----~i~~kAe~ea~   58 (198)
T PRK01558         17 LEEAERLANEIILEAKEEAEEIIAKAEEEAK----ELKAKAEKEAN   58 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            3444555677888999999999999888877    66666555544

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=82.62  E-value=22  Score=28.12  Aligned_cols=94  Identities=15%  Similarity=0.135  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (186)
Q Consensus        14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~   93 (186)
                      ..-+..+|+.+|.+|...|.++.+-.+..++.+........-+....+++.++.-.           .-..|.++.+-.+
T Consensus        65 ~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a-----------~~~l~~~i~~la~  133 (164)
T PRK14471         65 NERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAA-----------MAEIKNQVANLSV  133 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence            34456677777777777777777755555555555444443333333333222211           1223445555555


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHH
Q 029859           94 EAASKEVLNVSRDHNSYKKLLKGLI  118 (186)
Q Consensus        94 ~~a~~kL~~~~~~~~~Y~~lLk~LI  118 (186)
                      +-|.+-|..-..+++....++...|
T Consensus       134 ~~a~kil~~~l~~~~~~~~lid~~i  158 (164)
T PRK14471        134 EIAEKVLRKELSNKEKQHKLVEKML  158 (164)
T ss_pred             HHHHHHHHHHcCcHhHHHHHHHHHH
Confidence            6665555553322223344444444

>PRK00106 hypothetical protein; Provisional

Probab=82.21  E-value=49  Score=31.85  Aligned_cols=44  Identities=14%  Similarity=0.169  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccChh--HHHHHHHHHHHH
Q 029859           77 SRIKVLQAQDDLVSNMMEAASKEVLNVSRDHN--SYKKLLKGLIVQ  120 (186)
Q Consensus        77 ~Rl~~L~aRe~~i~~l~~~a~~kL~~~~~~~~--~Y~~lLk~LI~q  120 (186)
                      .|.+.|..+..-++.+..+...+|..+++-+.  -...||..+-.+
T Consensus       136 ~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~  181 (535)
T PRK00106        136 DKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENK  181 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            33455555555666666666667776654431  233444444333

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=81.79  E-value=25  Score=28.13  Aligned_cols=59  Identities=31%  Similarity=0.300  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Q 029859           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASR   78 (186)
Q Consensus        16 FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~R   78 (186)
                      --+.+|+.+|.+|...|..+..    .+.+.-+.+...+.++...+...+-..+.+..+..-|
T Consensus        65 ~~l~~Ar~~a~~Ii~~A~~~a~----~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~  123 (161)
T COG0711          65 QELEEAREQASEIIEQAKKEAE----QIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELR  123 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455777888888888888877    5555555555555555555555444444444444444

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=81.44  E-value=23  Score=27.53  Aligned_cols=93  Identities=15%  Similarity=0.083  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (186)
Q Consensus        14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~   93 (186)
                      ..-...+|+.+|.+|...|..+.+-++..++.+....+....+.....++.+++-.           .-..|.++.+-.+
T Consensus        61 ~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a-----------~~~l~~~~~~lA~  129 (156)
T PRK05759         61 YEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRA-----------REELRKQVADLAV  129 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence            44566778888888888888888877777777777777665555555555443222           2234455666666


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHH
Q 029859           94 EAASKEVLNVSRDHNSYKKLLKGLI  118 (186)
Q Consensus        94 ~~a~~kL~~~~~~~~~Y~~lLk~LI  118 (186)
                      .-|.+-|.... |+.....++...|
T Consensus       130 ~~a~k~l~~~~-d~~~~~~~i~~~i  153 (156)
T PRK05759        130 AGAEKILGREL-DAAAQSDLIDKLI  153 (156)
T ss_pred             HHHHHHHHhHc-CHHHHHHHHHHHH
Confidence            66655555543 3334445554444

>PRK00106 hypothetical protein; Provisional

Probab=80.96  E-value=55  Score=31.55  Aligned_cols=18  Identities=33%  Similarity=0.363  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 029859           19 QEAEEKANEISVSAEEEF   36 (186)
Q Consensus        19 qEA~eKA~EI~~kA~eef   36 (186)
                      .+|+.+|++|...|..+.
T Consensus        49 eeAe~eAe~I~keA~~EA   66 (535)
T PRK00106         49 GKAERDAEHIKKTAKRES   66 (535)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444444333

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=80.93  E-value=23  Score=27.26  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 029859           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI   64 (186)
Q Consensus        14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~   64 (186)
                      ..-+.++|+..|.+|...|..+.+-.+..++.+....+....+.....++.
T Consensus        52 ~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~  102 (147)
T TIGR01144        52 AQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEA  102 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777788877777777666666666665555544444444443

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=80.61  E-value=29  Score=28.10  Aligned_cols=35  Identities=23%  Similarity=0.268  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (186)
Q Consensus        18 ~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~   52 (186)
                      .++|+.+|.+|...|..+...+...+..+....+.
T Consensus        88 L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~  122 (184)
T PRK13455         88 QREVQEQADRIVAAAKDEAQAAAEQAKADLEASIA  122 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555444444444333333

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=80.29  E-value=22  Score=26.52  Aligned_cols=39  Identities=31%  Similarity=0.298  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (186)
Q Consensus        15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~   53 (186)
                      .-...+|+..+.+|...|.++.+-++..++.+....+..
T Consensus        57 ~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~   95 (132)
T PF00430_consen   57 EEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAER   95 (132)
T ss_dssp             HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555556666655555554444544444444443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
4dl0_J	233	Crystal Structure Of The Heterotrimeric Egchead Per		2e-20
2kz9_A	69	Structure Of E1-69 Of Yeast V-Atpase Length = 69		2e-04

>pdb|4DL0|J Chain J, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 233

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 99/167 (59%)
Query: 6   VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65
           V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+  + 
Sbjct: 13  VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLS 72
Query: 66  KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRL 125
           ++I  S   N  R+KVL A++  +  + E   +++  ++ + + YK +L+ LIV++LL+L
Sbjct: 73  QQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKL 132
Query: 126 KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172
            EP  +++  + D  L+ES+ +    EY +K Q  P E IV  + YL
Sbjct: 133 LEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYL 179

>pdb|2KZ9|A Chain A, Structure Of E1-69 Of Yeast V-Atpase Length = 69

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 6  VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62
          V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+ 
Sbjct: 13 VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKA 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	100.0
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	99.8
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	99.79
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	99.21
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	94.62
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	92.79
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	89.51
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	83.98

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=100.00  E-value=3.1e-44  Score=301.09  Aligned_cols=175  Identities=33%  Similarity=0.539  Sum_probs=166.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q 029859            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (186)
Q Consensus         1 m~d~ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~   80 (186)
                      |||+||++||++|++||++||++||+||..+|++||+++|+++|++++.+|+..|++++++++++++|..|+..|++|++
T Consensus         8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~   87 (233)
T 4efa_E            8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK   87 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029859           81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  160 (186)
Q Consensus        81 ~L~aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~  160 (186)
                      +|.+|+++|+++|+.|+++|..+++|+..|+.+|.+||.||++.|++|+|+|+||+.|.++|+++++++..+|+..+|..
T Consensus        88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~  167 (233)
T 4efa_E           88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRA  167 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCeEeeccCCCCCCC
Q 029859          161 PPEIIVDHHIYLPPG  175 (186)
Q Consensus       161 ~~~i~id~~~~L~~~  175 (186)
                      ++...++...|||++
T Consensus       168 ~~~~~~~~~~~l~~~  182 (233)
T 4efa_E          168 PLEEIVISNDYLNKD  182 (233)
T ss_dssp             CCCEEEECSSCCCTT
T ss_pred             CccccccccccCCcc
Confidence            433344445777655

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=99.80  E-value=8.8e-18  Score=135.98  Aligned_cols=131  Identities=12%  Similarity=0.184  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 029859           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ----VEIRKKIEYSMQLNASRIKVLQAQDD   87 (186)
Q Consensus        12 kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq----~e~~k~I~~S~~~n~~Rl~~L~aRe~   87 (186)
                      +..+-|..||+.+|++|...|+++.+    .|+.+.+.+....++...+.    ......+..|+..+++|+++|.+|++
T Consensus         2 ~~~~~l~~eA~~~a~~I~~eA~~~a~----~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e   77 (187)
T 3v6i_A            2 KLEAILSQEVEAEIQALLQEAEAKAE----AVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE   77 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667888899999999988888888    88888887776666555444    44446677999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHH
Q 029859           88 LVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES  148 (186)
Q Consensus        88 ~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~  148 (186)
                      +|+++|+.|+++|..++.+ ..|+.+|.+||.+|+..|++|.++| ||+.|.++|++++++
T Consensus        78 li~~v~~~a~~~L~~~~~~-~~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~  136 (187)
T 3v6i_A           78 VLEEVRRRVREALEALPQK-PEWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE  136 (187)
T ss_dssp             HHHHHHHHHHHHHHHGGGS-TTHHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh
Confidence            9999999999999999988 4799999999999999999999977 999999999988875

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=99.79  E-value=1.3e-19  Score=145.11  Aligned_cols=145  Identities=21%  Similarity=0.318  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Q 029859            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA   84 (186)
Q Consensus         5 ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~a   84 (186)
                      ++-.+.+.|.+||.++|+++|++|..+|.++|+.++.+++++..           ++++..+++..|+..++.|..+|.+
T Consensus        10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~-----------~e~~~~~~~~~s~~~~~~r~~~l~~   78 (198)
T 2dm9_A           10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAK-----------TQAELEKQRIIANARLEVRRKRLAI   78 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567889999999999999999999999999999999998874           4566678888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 029859           85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEI  164 (186)
Q Consensus        85 Re~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i  164 (186)
                      |+++++.++..|++.|..++  +..|+.+|.+||.+|+..+.++.|+|+|++.|+++|++.++.+...|.   +   +.+
T Consensus        79 ~~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~---~---~~l  150 (198)
T 2dm9_A           79 QEEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG---D---VSI  150 (198)
T ss_dssp             --CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT---T---CEE
T ss_pred             HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc---C---ceE
Confidence            99999999999999999965  458999999999999999999999999999999999999999988885   2   577


Q ss_pred             eecc
Q 029859          165 IVDH  168 (186)
Q Consensus       165 ~id~  168 (186)
                      +|+.
T Consensus       151 ~i~~  154 (198)
T 2dm9_A          151 ELGE  154 (198)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            7764

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}

Probab=99.21  E-value=4.2e-13  Score=100.41  Aligned_cols=60  Identities=20%  Similarity=0.245  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHH-HHHHHHHHHHHhCCCCCeEeecc
Q 029859          108 NSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDH  168 (186)
Q Consensus       108 ~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~-l~~~~~~y~~~~~~~~~~i~id~  168 (186)
                      ++|+++|++||+||++.|++|+|+|+||+.|.++|+++ ++++.++|++++|.+ +++++|+
T Consensus         3 ~~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~~-~~v~~~~   63 (106)
T 3lg8_A            3 PEYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKKV-TVLKKGE   63 (106)
T ss_dssp             CSTTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSSC-CCCCCCC
T ss_pred             cHHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCCe-EEEEeCC
Confidence            37999999999999999999999999999999999999 999999999999987 6777764

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=94.62  E-value=0.14  Score=33.08  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (186)
Q Consensus        10 i~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~   53 (186)
                      +..+++-|..+|+.+|+.|...|+.+.+    .|+.+...+...
T Consensus         8 le~i~~kI~~eA~~eA~~Il~eA~~eA~----~Ii~eA~~~Ae~   47 (52)
T 2kk7_A            8 VDKIKSKILDDAKAEANKIISEAEAEKA----KILEKAKEEAEK   47 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            6789999999999999999999999999    888887766553

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=92.79  E-value=2.8  Score=32.77  Aligned_cols=97  Identities=19%  Similarity=0.146  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--------HHHHHH
Q 029859            6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYS--------MQLNAS   77 (186)
Q Consensus         6 v~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S--------~~~n~~   77 (186)
                      ...+-+.-.+-|..+|+.+|++|...|+++..-.+..+.......+...+++....+.++.+...-        ...+.+
T Consensus         7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a   86 (187)
T 3v6i_A            7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRV   86 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556667789999999999999999999998888888887777777777777666665433322        233444


Q ss_pred             HHHHHH-----HHHHHHHHHHHHHHHHHHh
Q 029859           78 RIKVLQ-----AQDDLVSNMMEAASKEVLN  102 (186)
Q Consensus        78 Rl~~L~-----aRe~~i~~l~~~a~~kL~~  102 (186)
                      |-++.+     ...++|..++.++...|..
T Consensus        87 ~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~~  116 (187)
T 3v6i_A           87 REALEALPQKPEWPEVVRKLALEALEALPG  116 (187)
T ss_dssp             HHHHHHGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhhhCCccHHHHHHHHHHHHHHHcCC
Confidence            433222     2457888888887766643

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=89.51  E-value=0.11  Score=40.42  Aligned_cols=125  Identities=14%  Similarity=0.219  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 029859           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (186)
Q Consensus        10 i~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i   89 (186)
                      +..++.-|..+|+.+|.+|...|.++.+    .|+.+...+...++.+-..+..               -..-..+...+
T Consensus         4 le~l~~~il~~A~~~a~~il~eA~~~a~----~i~~~a~~e~~~~~~~~~~~a~---------------~e~~~~~~~~~   64 (198)
T 2dm9_A            4 AELIIQEINKEAERKIEYILNEARQQAE----KIKEEARRNAEAKAEWIIRRAK---------------TQAELEKQRII   64 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence            5678999999999999999999999999    8888877766654444443332               22223344445


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeecc
Q 029859           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH  168 (186)
Q Consensus        90 ~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~  168 (186)
                      ..+..+++..+...-       .-+.+++..++.+.... +   +.....+++.+++.++...+    +...+.|.+++
T Consensus        65 s~~~~~~r~~~l~~~-------~ev~~~~~~~a~~~l~~-l---~~~~y~~~l~~li~e~~~~~----~~~~v~i~v~~  128 (198)
T 2dm9_A           65 ANARLEVRRKRLAIQ-------EEIISSVLEEVKRRLET-M---SEDEYFESVKALLKEAIKEL----NEKKVRVMSNE  128 (198)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHH-C---CHHHHHHHHHHHHHHHHHHH----TCSEEEEECCH
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh-c---CHHHHHHHHHHHHHHHHHHc----CCCCEEEEECH
Confidence            555555555554432       22233333333332222 2   12334677778877777665    32224566543

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=83.98  E-value=6.4  Score=25.19  Aligned_cols=12  Identities=17%  Similarity=0.390  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHH
Q 029859           42 QLVEAEKKKIRQ   53 (186)
Q Consensus        42 ~lv~~ek~kI~~   53 (186)
                      +|+.+.+..|..
T Consensus        39 ~i~~~A~~eie~   50 (61)
T 1l2p_A           39 KIVAQAQAEIEA   50 (61)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d2dm9a1	118	d.81.4.1 (A:81-198) V-type ATP synthase subunit E	3e-12

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 58.7 bits (142), Expect = 3e-12
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 87  DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 146
           +++S+++E   + +  +S D   Y + +K L+ +++  L E  V +   +    L+ S +
Sbjct: 1   EIISSVLEEVKRRLETMSEDE--YFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRI 58

Query: 147 ESAKEEYAQK 156
           E  K E    
Sbjct: 59  EEIKSELGDV 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	99.19
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	87.56

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=7e-12  Score=92.58  Aligned_cols=66  Identities=23%  Similarity=0.394  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHH
Q 029859           87 DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA  154 (186)
Q Consensus        87 ~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~  154 (186)
                      ++|+++|++|.++|.+++++  .|+++|++||.||+.+|++++|+|+|++.|.++|+++++++..+|+
T Consensus         1 E~i~~v~~~a~~~l~~~~~~--~Y~~~L~~Li~~a~~~l~~~ev~v~~~~~D~~~v~~~~~~~~~~~~   66 (118)
T d2dm9a1           1 EIISSVLEEVKRRLETMSED--EYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG   66 (118)
T ss_dssp             CHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHHccChh--HHHHHHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHHcC
Confidence            47999999999999999764  7999999999999999999999999999999999999999988874

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=87.56  E-value=1.6  Score=27.44  Aligned_cols=44  Identities=23%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (186)
Q Consensus        14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ek   57 (186)
                      -+-|..+|+..+..|...|......|..+|+......|..+..+
T Consensus        11 Aa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~   54 (61)
T d1l2pa_          11 AQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKR   54 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666666666666666667777777766654433