Citrus Sinensis ID: 029895

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MLSRTLTTKTLPLIFNGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNCWTSF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEcccEEEEcccccccHHHHcccccccccccEHHHHHHHHHcccccccccccccEcccccccccHHHcccHHHHHHHHHHHHHccccccccHHHHHcHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHcccHHHHHHcEEEEEEEcHHHHHHHHHHcHccc
Coil and Loop (DISEMBL)
mlsrtlttktlplifngvdliavnpcqpplkalfsthivgdkpvlVRDFIHsalyhpkhgyfsqrsrsvgVLDAAIKFNQLQGRKAYMKHVDKIYKqseiswftpvelfkpwyaHGIAEAIMRTAnlsvplkiyeigggsgtcakGVMDYIMLNAPERVYNNMTYISVEIQSltgrdterncwtsf
Flexible Loop (DISEMBL)
mlsrtlttktlpliFNGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEiqsltgrdterncwtsf
Low Complexity Region (SEG)
MLSRTLTTKTLPLIFNGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNCWTSF
Disordered region (IsUnstruct)
******TTKTLPLIFNGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG***********
Disordered Region (DISOPRED)
********KTLPLIFNGVDLIAV********************VLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD**R******
Disordered Region (DISEMBL)
MLSRTLTTKTLPLIFNGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNCWTSF
Disordered Region (DISPRO)
*****LTTKTLPLIFNGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNCWTSF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSRTLTTKTLPLIFNGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNCWTSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
356558083	441	PREDICTED: uncharacterized protein LOC10	0.870	0.367	0.817	1e-74
255554130	444	conserved hypothetical protein [Ricinus	0.913	0.382	0.782	1e-74
224055903	432	predicted protein [Populus trichocarpa]	0.849	0.365	0.729	9e-67
449476097	185	PREDICTED: uncharacterized protein LOC10	0.956	0.962	0.684	2e-66
225462783	450	PREDICTED: protein midA homolog [Vitis v	0.924	0.382	0.705	1e-65
297843292	447	hypothetical protein ARALYDRAFT_470475 [	0.903	0.375	0.703	3e-65
7211976	479	F13M7.11 [Arabidopsis thaliana]	0.784	0.304	0.782	1e-64
18390452	442	uncharacterized protein [Arabidopsis tha	0.784	0.330	0.782	1e-64
296090510	458	unnamed protein product [Vitis vinifera]	0.924	0.375	0.622	1e-61
357126444	444	PREDICTED: protein midA homolog [Brachyp	0.758	0.317	0.753	2e-58

>gi|356558083|ref|XP_003547338.1| PREDICTED: uncharacterized protein LOC100799456 [Glycine max]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 149/170 (87%), Gaps = 8/170 (4%)

Query: 1   MLSRTLTTKTLPLIFNGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHG 60
           MLSRT   +T PLI      +A   C PPL+AL+STHIVGDKPVLVRDFIHSALYHP HG
Sbjct: 1   MLSRT---RTFPLIS-----LASKVCAPPLEALYSTHIVGDKPVLVRDFIHSALYHPLHG 52

Query: 61  YFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEA 120
           YFSQRSRSVGVL  AIKFNQLQGRKAYMK++D IYKQS+ISWFTPVELFKPWYAH IAEA
Sbjct: 53  YFSQRSRSVGVLPNAIKFNQLQGRKAYMKYLDNIYKQSDISWFTPVELFKPWYAHAIAEA 112

Query: 121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEI 170
           IMRTAN SVPLKIYEIGGGSGTCAKG+MDYIMLNAP +VYN+MTYISVEI
Sbjct: 113 IMRTANFSVPLKIYEIGGGSGTCAKGIMDYIMLNAPAKVYNSMTYISVEI 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554130|ref|XP_002518105.1| conserved hypothetical protein [Ricinus communis] gi|223542701|gb|EEF44238.1| conserved hypothetical protein [Ricinus communis]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/170 (78%), Positives = 147/170 (86%)

Query: 1   MLSRTLTTKTLPLIFNGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHG 60
           M SR+LT K   L  +G  +I+      P +AL+STHIVGDKP+LVRDFIHSALYHP HG
Sbjct: 1   MFSRSLTCKKHWLFLHGRKVISYESATSPFQALYSTHIVGDKPILVRDFIHSALYHPLHG 60

Query: 61  YFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEA 120
           YFSQRSRSVGVL+ +IKFNQLQGRKAY+ H+DKIYKQS+ISWFTPVELF PWYAHGIAEA
Sbjct: 61  YFSQRSRSVGVLEKSIKFNQLQGRKAYLNHLDKIYKQSDISWFTPVELFNPWYAHGIAEA 120

Query: 121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEI 170
           IMRTANLSVPL+IYEIGGGSGTCAKG+MDYIMLNAP RVYN MTY SVEI
Sbjct: 121 IMRTANLSVPLRIYEIGGGSGTCAKGIMDYIMLNAPSRVYNTMTYTSVEI 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055903|ref|XP_002298698.1| predicted protein [Populus trichocarpa] gi|222845956|gb|EEE83503.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (658), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 141/170 (82%), Gaps = 12/170 (7%)

Query: 1   MLSRTLTTKTLPLIFNGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHG 60
           M +R+ TTK L   F               K+ FST+IVG+KPVLVRDFIHSALY PKHG
Sbjct: 1   MFTRSPTTKKLFFFFRS------------HKSHFSTNIVGEKPVLVRDFIHSALYDPKHG 48

Query: 61  YFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEA 120
           YFSQRSRSVGVL+ +I+FNQL+GRKAYM H+DKIYK+S+ISWFTPVELFKPWYAHGIAEA
Sbjct: 49  YFSQRSRSVGVLERSIRFNQLEGRKAYMNHLDKIYKRSDISWFTPVELFKPWYAHGIAEA 108

Query: 121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEI 170
           IMRT+ LSVPL+IYEIGGGSG CAKG++DYIMLNAP R+YNNMTY SVEI
Sbjct: 109 IMRTSQLSVPLQIYEIGGGSGICAKGILDYIMLNAPARIYNNMTYTSVEI 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476097|ref|XP_004154639.1| PREDICTED: uncharacterized protein LOC101223693 [Cucumis sativus]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 145/187 (77%), Gaps = 9/187 (4%)

Query: 1   MLSRTLTTKTLPLIFNGVDLIAVNPCQPPLKAL----FSTHIVGDKPVLVRDFIHSALYH 56
           M S     +   L F+   +I+   CQ     L    FSTHIVGD PVLVRDFIHSALY 
Sbjct: 1   MASLAFPFRNFSLFFHCPRVIS---CQQSWSFLSGSHFSTHIVGDDPVLVRDFIHSALYD 57

Query: 57  PKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHG 116
             HGYF+QRSRSVGVL+ +IKFNQL+GRKAYM+++DKIYKQS++SWFTPVE+FKPWYAHG
Sbjct: 58  QNHGYFAQRSRSVGVLEHSIKFNQLEGRKAYMRYLDKIYKQSDVSWFTPVEIFKPWYAHG 117

Query: 117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR 176
           IAEAIMRTANLSVPLKIYEIGGGSGTCAKG+MDYIMLNAP RVY  MTY     +S+  R
Sbjct: 118 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGIMDYIMLNAPTRVYKTMTYTGN--KSVFSR 175

Query: 177 DTERNCW 183
           DTE N W
Sbjct: 176 DTETNRW 182

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462783|ref|XP_002263790.1| PREDICTED: protein midA homolog [Vitis vinifera]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/173 (70%), Positives = 145/173 (83%), Gaps = 1/173 (0%)

Query: 1   MLSRTLT-TKTLPLIFNGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKH 59
           M SRTLT +K   L F+   + +     P + A FSTHIVGD+PVLVRDFI SALY P H
Sbjct: 1   MASRTLTCSKRFALYFSKPKVFSCESFTPLIPAFFSTHIVGDRPVLVRDFIWSALYDPNH 60

Query: 60  GYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAE 119
           GYFS RS SVG+L+ +IKFN+LQGRKAYMK+++ IY Q++I+WFTPVELFKPWYA+GIAE
Sbjct: 61  GYFSHRSGSVGMLEESIKFNRLQGRKAYMKYLEGIYSQNDIAWFTPVELFKPWYAYGIAE 120

Query: 120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172
           AI+RTA+LSVPLKIYEIGGGSGTCAKG+MDY+MLNAP RVYN+M+YISVEI S
Sbjct: 121 AILRTADLSVPLKIYEIGGGSGTCAKGIMDYLMLNAPARVYNSMSYISVEISS 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843292|ref|XP_002889527.1| hypothetical protein ARALYDRAFT_470475 [Arabidopsis lyrata subsp. lyrata] gi|297335369|gb|EFH65786.1| hypothetical protein ARALYDRAFT_470475 [Arabidopsis lyrata subsp. lyrata]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 121/172 (70%), Positives = 146/172 (84%), Gaps = 4/172 (2%)

Query: 2   LSRTLTTKTLPLIF--NGVDLIAVNPCQPPLKALFSTH-IVGDKPVLVRDFIHSALYHPK 58
           L R + ++ +PL+     VD   + P    L+A FST  ++GD+PVLVRDFIH+ALY P+
Sbjct: 3   LVRFIPSRKIPLLSWSRNVDQFEL-PSLGSLRAFFSTQKLIGDEPVLVRDFIHTALYDPQ 61

Query: 59  HGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIA 118
            GYFSQRS+SVGVL+ +IKFNQL+GRKAYMK ++K+YKQS+ISWFTPVELFKPWYAHGIA
Sbjct: 62  KGYFSQRSKSVGVLERSIKFNQLEGRKAYMKLLEKVYKQSDISWFTPVELFKPWYAHGIA 121

Query: 119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEI 170
           EAI+RT NLSVPLKIYEIGGGSGTCAKGV+DYIMLNAPER+YNNM+Y S+EI
Sbjct: 122 EAILRTTNLSVPLKIYEIGGGSGTCAKGVLDYIMLNAPERIYNNMSYTSIEI 173

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7211976|gb|AAF40447.1|AC004809_5 F13M7.11 [Arabidopsis thaliana]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 133/147 (90%), Gaps = 1/147 (0%)

Query: 25  PCQPPLKALFSTH-IVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQG 83
           PC   L+A FST  ++GD+PVLVRDFIH+ALY P  GYFSQRS+SVGVL+ +IKFNQL+G
Sbjct: 22  PCLGSLRAFFSTQKLIGDEPVLVRDFIHTALYDPIQGYFSQRSKSVGVLERSIKFNQLEG 81

Query: 84  RKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTC 143
           RKAYMK ++K+YKQS+ISWFTPVELFKPWYAHGIAEAI+RT NLSVPLKIYEIGGGSGTC
Sbjct: 82  RKAYMKLLEKVYKQSDISWFTPVELFKPWYAHGIAEAILRTTNLSVPLKIYEIGGGSGTC 141

Query: 144 AKGVMDYIMLNAPERVYNNMTYISVEI 170
           AKGV+DYIMLNAPER+Y NM+Y S+EI
Sbjct: 142 AKGVLDYIMLNAPERIYKNMSYTSIEI 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390452|ref|NP_563721.1| uncharacterized protein [Arabidopsis thaliana] gi|14334776|gb|AAK59566.1| unknown protein [Arabidopsis thaliana] gi|21280933|gb|AAM44929.1| unknown protein [Arabidopsis thaliana] gi|21618146|gb|AAM67196.1| unknown [Arabidopsis thaliana] gi|332189636|gb|AEE27757.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 133/147 (90%), Gaps = 1/147 (0%)

Query: 25  PCQPPLKALFSTH-IVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQG 83
           PC   L+A FST  ++GD+PVLVRDFIH+ALY P  GYFSQRS+SVGVL+ +IKFNQL+G
Sbjct: 22  PCLGSLRAFFSTQKLIGDEPVLVRDFIHTALYDPIQGYFSQRSKSVGVLERSIKFNQLEG 81

Query: 84  RKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTC 143
           RKAYMK ++K+YKQS+ISWFTPVELFKPWYAHGIAEAI+RT NLSVPLKIYEIGGGSGTC
Sbjct: 82  RKAYMKLLEKVYKQSDISWFTPVELFKPWYAHGIAEAILRTTNLSVPLKIYEIGGGSGTC 141

Query: 144 AKGVMDYIMLNAPERVYNNMTYISVEI 170
           AKGV+DYIMLNAPER+Y NM+Y S+EI
Sbjct: 142 AKGVLDYIMLNAPERIYKNMSYTSIEI 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090510|emb|CBI40841.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 122/196 (62%), Positives = 145/196 (73%), Gaps = 24/196 (12%)

Query: 1   MLSRTLT-TKTLPLIFNGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKH 59
           M SRTLT +K   L F+   + +     P + A FSTHIVGD+PVLVRDFI SALY P H
Sbjct: 1   MASRTLTCSKRFALYFSKPKVFSCESFTPLIPAFFSTHIVGDRPVLVRDFIWSALYDPNH 60

Query: 60  GYFSQRSRSVGVLDAAIKFNQLQG-----------------------RKAYMKHVDKIYK 96
           GYFS RS SVG+L+ +IKFN+LQG                       RKAYMK+++ IY 
Sbjct: 61  GYFSHRSGSVGMLEESIKFNRLQGIFKILNVYDSSFKLYKYGAFPMCRKAYMKYLEGIYS 120

Query: 97  QSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAP 156
           Q++I+WFTPVELFKPWYA+GIAEAI+RTA+LSVPLKIYEIGGGSGTCAKG+MDY+MLNAP
Sbjct: 121 QNDIAWFTPVELFKPWYAYGIAEAILRTADLSVPLKIYEIGGGSGTCAKGIMDYLMLNAP 180

Query: 157 ERVYNNMTYISVEIQS 172
            RVYN+M+YISVEI S
Sbjct: 181 ARVYNSMSYISVEISS 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126444|ref|XP_003564897.1| PREDICTED: protein midA homolog [Brachypodium distachyon]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/142 (75%), Positives = 126/142 (88%), Gaps = 1/142 (0%)

Query: 32  ALFSTHIV-GDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKH 90
           ALFS+ IV GDKPVLVRDF+ SALY P HGYFS+RS  VGVLD++I+F+QL+GR AYMKH
Sbjct: 24  ALFSSGIVAGDKPVLVRDFVRSALYDPSHGYFSKRSGPVGVLDSSIRFHQLEGRSAYMKH 83

Query: 91  VDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDY 150
           +DK+YK+ +I+WFTPVELFKPWYA+ IA +I+RTANLS PLKIYEIGGGSGTCAK V+DY
Sbjct: 84  LDKLYKKHDIAWFTPVELFKPWYAYAIAASILRTANLSTPLKIYEIGGGSGTCAKCVLDY 143

Query: 151 IMLNAPERVYNNMTYISVEIQS 172
           +MLNAP +VYNNM YISVEI S
Sbjct: 144 MMLNAPPKVYNNMKYISVEISS 165

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2010567	442	AT1G04900 "AT1G04900" [Arabido	0.784	0.330	0.782	3.4e-61
ASPGD|ASPL0000044182	498	AN10212 [Emericella nidulans (	0.779	0.291	0.315	6.9e-11
CGD|CAL0005330	540	orf19.4820 [Candida albicans (	0.413	0.142	0.402	6.9e-09
UNIPROTKB|Q5APE5	540	CaO19.12283 "Putative uncharac	0.413	0.142	0.402	6.9e-09

TAIR|locus:2010567 AT1G04900 "AT1G04900" [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 115/147 (78%), Positives = 133/147 (90%)

Query:    25 PCQPPLKALFSTH-IVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQG 83
             PC   L+A FST  ++GD+PVLVRDFIH+ALY P  GYFSQRS+SVGVL+ +IKFNQL+G
Sbjct:    22 PCLGSLRAFFSTQKLIGDEPVLVRDFIHTALYDPIQGYFSQRSKSVGVLERSIKFNQLEG 81

Query:    84 RKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTC 143
             RKAYMK ++K+YKQS+ISWFTPVELFKPWYAHGIAEAI+RT NLSVPLKIYEIGGGSGTC
Sbjct:    82 RKAYMKLLEKVYKQSDISWFTPVELFKPWYAHGIAEAILRTTNLSVPLKIYEIGGGSGTC 141

Query:   144 AKGVMDYIMLNAPERVYNNMTYISVEI 170
             AKGV+DYIMLNAPER+Y NM+Y S+EI
Sbjct:   142 AKGVLDYIMLNAPERIYKNMSYTSIEI 168

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000044182 AN10212 [Emericella nidulans (taxid:162425)]

 Score = 160 (61.4 bits), Expect = 6.9e-11, P = 6.9e-11
 Identities = 53/168 (31%), Positives = 85/168 (50%)

Query:    29 PLKALFSTHIVGDKP----VLVRDFIHSALYHPKHGYFSQRSR--SVGV------LDAAI 76
             PL A        D+P    +L R+FI  +LY+P +GYFS+ +   S G       ++   
Sbjct:    79 PLMAAKDLRHRQDRPRQVQMLTREFIDDSLYNPHYGYFSKHATIFSPGEPFDFNNIEDGP 138

Query:    77 KFNQLQGRKAYMKHVDKI-YKQSEIS---WFTPVELFKPWYAHGIAEAIMRTANLSV-P- 130
              F++L G + Y +  D +  KQ + +   W TP ELF+P+Y   IA  ++    L++ P 
Sbjct:   139 AFHRLLGER-YTEFEDMLDEKQPDEARQLWHTPTELFRPYYGETIARYLVSNYKLTLYPY 197

Query:   131 --LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ-SLTG 175
               L IYE+G G+GT    ++D+I  +    VY    +  +EI  +L G
Sbjct:   198 HDLIIYEMGAGNGTMMINILDFIR-DTDYEVYQRTKFRIIEISPALAG 244

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0005330 orf19.4820 [Candida albicans (taxid:5476)]

 Score = 142 (55.0 bits), Expect = 6.9e-09, P = 6.9e-09
 Identities = 33/82 (40%), Positives = 47/82 (57%)

Query:    95 YKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSV-P---LKIYEIGGGSGTCAKGVMDY 150
             Y++S   W TP ELF P+Y   +A  I+    L+V P   L IYE+GGG+GT    +++Y
Sbjct:   178 YRKSLQLWHTPTELFHPYYGEALARYILVNYKLNVYPYNDLIIYEMGGGNGTLMCDILNY 237

Query:   151 IMLNAPERVYNNMTYISVEIQS 172
             I  + PE +Y    Y  +EI S
Sbjct:   238 IRKHQPE-IYEKTQYKIIEISS 258

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5APE5 CaO19.12283 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 142 (55.0 bits), Expect = 6.9e-09, P = 6.9e-09
 Identities = 33/82 (40%), Positives = 47/82 (57%)

Query:    95 YKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSV-P---LKIYEIGGGSGTCAKGVMDY 150
             Y++S   W TP ELF P+Y   +A  I+    L+V P   L IYE+GGG+GT    +++Y
Sbjct:   178 YRKSLQLWHTPTELFHPYYGEALARYILVNYKLNVYPYNDLIIYEMGGGNGTLMCDILNY 237

Query:   151 IMLNAPERVYNNMTYISVEIQS 172
             I  + PE +Y    Y  +EI S
Sbjct:   238 IRKHQPE-IYEKTQYKIIEISS 258


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      186       186   0.00083  110 3  11 22  0.40    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  164 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.97u 0.08s 16.05t   Elapsed:  00:00:01
  Total cpu time:  15.97u 0.08s 16.05t   Elapsed:  00:00:01
  Start:  Thu May  9 23:39:16 2013   End:  Thu May  9 23:39:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
COG1565	370	COG1565, COG1565, Uncharacterized conserved protei	5e-08
pfam02636	241	pfam02636, Methyltransf_28, Putative S-adenosyl-L-	2e-07

>gnl|CDD|224481 COG1565, COG1565, Uncharacterized conserved protein [Function unknown]

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 33/131 (25%)

Query: 43  PVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISW 102
           P+   DF+  ALY P+HGY+S                   GRK      D         +
Sbjct: 17  PISFSDFMELALYDPEHGYYSSAV--------------KIGRK-----GD---------F 48

Query: 103 FTPVEL---FKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERV 159
            T  EL   F    A    +          PLK+ EIG G GT A  ++  +    PE +
Sbjct: 49  ITAPELSQLFGELLAEQFLQLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPE-L 106

Query: 160 YNNMTYISVEI 170
           Y  ++Y  +E 
Sbjct: 107 YEALSYYIIEP 117

Length = 370

>gnl|CDD|217158 pfam02636, Methyltransf_28, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEI 170
           +A+        + PL++ EIG G GT A  ++  +    PE  Y  + Y  VEI
Sbjct: 6   LAQLWQALGYPA-PLRLVEIGAGRGTLAADILRALRKLLPE-FYEALEYHLVEI 57

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. In eukaryotes it plays a role in mitochondrial complex I activity. Length = 241

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
COG1565	370	Uncharacterized conserved protein [Function unknow	100.0
KOG2901	415	consensus Uncharacterized conserved protein [Funct	99.84
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	99.65
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.53
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.52
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.45
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	97.45
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.39
PHA03412	241	putative methyltransferase; Provisional	97.29
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.27
PRK06202	232	hypothetical protein; Provisional	97.2
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.13
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.04
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	97.02
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.97
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	96.95
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.93
PRK08317	241	hypothetical protein; Provisional	96.83
PF13679	141	Methyltransf_32: Methyltransferase domain	96.8
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.8
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	96.76
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	96.73
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	96.7
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.67
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.66
TIGR03438	301	probable methyltransferase. This model represents	96.65
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.6
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	96.58
PRK10258	251	biotin biosynthesis protein BioC; Provisional	96.58
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	96.57
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.53
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	96.5
PRK07402	196	precorrin-6B methylase; Provisional	96.48
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.47
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	96.46
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.44
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.43
TIGR00740	239	methyltransferase, putative. A simple BLAST search	96.42
PLN02233	261	ubiquinone biosynthesis methyltransferase	96.4
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	96.38
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	96.31
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	96.26
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	96.23
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.22
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.17
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	96.15
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	96.1
PRK05785	226	hypothetical protein; Provisional	96.09
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	96.09
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.08
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	96.03
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.02
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	95.99
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.97
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	95.91
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	95.9
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	95.85
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	95.85
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	95.8
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	95.78
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	95.76
PHA03411	279	putative methyltransferase; Provisional	95.76
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	95.73
PLN02244	340	tocopherol O-methyltransferase	95.64
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	95.58
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	95.52
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	95.48
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	95.47
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	95.44
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	95.41
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	95.39
PRK14967	223	putative methyltransferase; Provisional	95.39
PRK04457	262	spermidine synthase; Provisional	95.37
PRK11207	197	tellurite resistance protein TehB; Provisional	95.36
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	95.35
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	95.15
PRK00811	283	spermidine synthase; Provisional	95.02
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	95.0
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.0
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.94
PRK14968	188	putative methyltransferase; Provisional	94.91
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	94.82
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	94.81
TIGR00438	188	rrmJ cell division protein FtsJ.	94.8
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	94.71
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	94.62
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	94.62
KOG2904	328	consensus Predicted methyltransferase [General fun	94.57
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	94.51
PRK04148	134	hypothetical protein; Provisional	94.34
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	94.24
TIGR00452	314	methyltransferase, putative. Known examples to dat	94.19
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	94.09
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	94.0
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	93.95
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	93.89
COG2890	280	HemK Methylase of polypeptide chain release factor	93.87
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	93.74
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	93.74
PRK01581	374	speE spermidine synthase; Validated	93.72
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	93.69
COG4123	248	Predicted O-methyltransferase [General function pr	93.69
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	93.6
PRK04266	226	fibrillarin; Provisional	93.58
PRK12335	287	tellurite resistance protein TehB; Provisional	93.55
PLN02336	475	phosphoethanolamine N-methyltransferase	93.53
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	93.48
PLN02336	475	phosphoethanolamine N-methyltransferase	93.45
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	93.26
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	93.26
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	93.19
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	93.11
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	93.09
PLN02366	308	spermidine synthase	93.08
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	93.05
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	92.99
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	92.72
PRK06922	677	hypothetical protein; Provisional	92.69
PLN02585	315	magnesium protoporphyrin IX methyltransferase	92.69
PLN02490	340	MPBQ/MSBQ methyltransferase	92.57
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	92.52
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	92.43
PRK03612	521	spermidine synthase; Provisional	92.41
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	92.12
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	92.06
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	92.02
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	91.87
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	91.81
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	91.76
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	91.68
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	91.65
KOG4300	252	consensus Predicted methyltransferase [General fun	91.58
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	91.3
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	91.13
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	91.1
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	90.99
PLN02823	336	spermine synthase	90.86
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	90.7
PRK10901	427	16S rRNA methyltransferase B; Provisional	90.47
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	90.06
PTZ00146	293	fibrillarin; Provisional	90.05
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	89.81
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	89.57
PRK14902	444	16S rRNA methyltransferase B; Provisional	89.0
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	88.98
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	88.67
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	88.46
PRK13255	218	thiopurine S-methyltransferase; Reviewed	88.28
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	88.15
PRK14904	445	16S rRNA methyltransferase B; Provisional	87.7
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	87.51
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	87.44
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	87.02
PRK14901	434	16S rRNA methyltransferase B; Provisional	86.86
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	86.61
PRK14903	431	16S rRNA methyltransferase B; Provisional	86.4
PTZ00357	1072	methyltransferase; Provisional	86.25
COG4122	219	Predicted O-methyltransferase [General function pr	86.22
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	86.1
PRK00536	262	speE spermidine synthase; Provisional	85.99
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	85.89
PLN02476	278	O-methyltransferase	85.76
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	85.08
PLN03075	296	nicotianamine synthase; Provisional	85.05
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	84.65
PLN02672	1082	methionine S-methyltransferase	84.61
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	84.55
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	84.14
COG0286	489	HsdM Type I restriction-modification system methyl	84.03
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	82.83
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	82.43
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	81.45
KOG2899	288	consensus Predicted methyltransferase [General fun	80.22

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.6e-35  Score=266.53  Aligned_cols=123  Identities=27%  Similarity=0.482  Sum_probs=116.8

Q ss_pred             hHHHHHhhhhhCCCceeHHHHHHHhhcCCCCccccCCCccccCCCcccccccccChHHHHHHHHHHhhhcCCcccccccc
Q 029895           29 PLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVEL  108 (186)
Q Consensus        29 ~l~~~~~~~I~~~~~i~frdFM~~aLY~p~~GYY~~~~~~iG~~G~~~Df~~l~~~~~y~~~~~~~y~~~~~dF~Ts~ei  108 (186)
                      +++.+++..|..+++|+|+|||++|||+|++|||++ ..+||+.|                           ||+||||+
T Consensus         3 ~~~~~~~~~i~~~g~i~f~~fM~~~L~~p~~GYYs~-~~~~G~~G---------------------------DFiTApel   54 (370)
T COG1565           3 LLALIIRALIAQGGPISFSDFMELALYDPEHGYYSS-AVKIGRKG---------------------------DFITAPEL   54 (370)
T ss_pred             cHHHHHHHHHhcCCCccHHHHHHHHHcCCCCccccc-chhccccC---------------------------CeeechhH
Confidence            567788888999999999999999999999999999 55999999                           69999999


Q ss_pred             chHHHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          109 FKPWYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       109 fsp~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                       |++||++||.|+++.|   +.|.++.|||||||+|+||.|||+++++..| ++|+.++|.|||+||.|+++|+++
T Consensus        55 -s~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P-~~~~~~~~~iiE~s~~L~~~Qk~~  128 (370)
T COG1565          55 -SQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYP-ELYEALSYYIIEPSPELRARQKET  128 (370)
T ss_pred             -HHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCH-HHHhcceEEEEecCHHHHHHHHHH
Confidence             9999999999999999   6788999999999999999999999999999 999999999999999999999775

>KOG2901 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=2.8e-21  Score=173.82  Aligned_cols=126  Identities=20%  Similarity=0.347  Sum_probs=114.0

Q ss_pred             CChhHHHHHhhhhhCCCceeHHHHHHHhhcCCCCccccCCCccccCCCcccccccccChHHHHHHHHHHhhhcCCccccc
Q 029895           26 CQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTP  105 (186)
Q Consensus        26 ~~~~l~~~~~~~I~~~~~i~frdFM~~aLY~p~~GYY~~~~~~iG~~G~~~Df~~l~~~~~y~~~~~~~y~~~~~dF~Ts  105 (186)
                      |+|-|...|..+|...|||++++||.++|-||..|||+... .+|+.|                           ||+||
T Consensus        31 ~t~~l~k~L~~ki~~sgpi~vaeym~evLtnp~~gyy~~rd-vfg~~g---------------------------dfitS   82 (415)
T KOG2901|consen   31 ETPHLVKHLKSKIKSTGPITVAEYMKEVLTNPKAGYYMNRD-VFGAKG---------------------------DFITS   82 (415)
T ss_pred             ccHHHHHHHHhhhhccCCccHHHHHHHHHhCcccceeccHH-Hhhccc---------------------------CccCC
Confidence            77779999999999999999999999999999999998766 899999                           69999


Q ss_pred             cccchHHHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH-HHh
Q 029895          106 VELFKPWYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT-ERN  181 (186)
Q Consensus       106 ~eifsp~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q-~~~  181 (186)
                      ||+ +++||++|+.|....|   +.+.+..++|+|+|+|+||.|+|+.+.+..-    ..++.++||.||.|.+.| +.+
T Consensus        83 pei-sq~fgeligvw~~~ew~~~g~~~~~qLvelgpgrgtl~~dvl~~~~kf~~----~~vs~hLve~S~~ls~lq~~~l  157 (415)
T KOG2901|consen   83 PEI-SQIFGEMIGVWTVSEWEQMGRPERFQLVELGPGRGTLMADVLRVLTKFKD----EDLSVHLVEVSPALSKLQAQNL  157 (415)
T ss_pred             ccH-HHHHHHhhheeEEEehhhhCCccceeEEEeccchhHHHHHHHHHHHHhcC----ceeeEEEEEecHhHHHHhhcce
Confidence            999 9999999999999999   6788899999999999999999999977542    346899999999999999 556


Q ss_pred             ccc
Q 029895          182 CWT  184 (186)
Q Consensus       182 ~~~  184 (186)
                      |-+
T Consensus       158 ~~~  160 (415)
T KOG2901|consen  158 CCT  160 (415)
T ss_pred             eEe
Confidence            644

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=99.65  E-value=1.2e-16  Score=135.73  Aligned_cols=66  Identities=32%  Similarity=0.481  Sum_probs=56.6

Q ss_pred             HHHHHHHHHh---CCCC-CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          116 GIAEAIMRTA---NLSV-PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       116 ~lA~~i~~~~---~~~~-~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      +||+|+++.|   +.|. +++|||+|||+|+||.|||+++++..| ++|++++|+|||+||.|+++|++..
T Consensus         1 ~ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p-~~~~~~~y~ivE~Sp~L~~~Q~~~L   70 (252)
T PF02636_consen    1 LIARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSP-EVYKRLRYHIVEISPYLRERQKERL   70 (252)
T ss_dssp             HHHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTH-HHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred             ChHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhCh-hhhhcceEEEEcCCHHHHHHHHHHh
Confidence            6899999999   3444 699999999999999999999999999 9999999999999999999997643

; PDB: 4F3N_A 1ZKD_B.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.53  E-value=0.00022  Score=61.63  Aligned_cols=61  Identities=16%  Similarity=0.223  Sum_probs=46.7

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .|++..++         ++.+++..+....-+|+|+|||+|.++..+++..    +       +++.||+|+.+.+.-++
T Consensus        23 ~fl~~~~i---------~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~----~-------~v~avE~d~~~~~~~~~   82 (272)
T PRK00274         23 NFLIDENI---------LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA----A-------KVTAVEIDRDLAPILAE   82 (272)
T ss_pred             CcCCCHHH---------HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC----C-------cEEEEECCHHHHHHHHH
Confidence            48888766         5666666554455689999999999999887752    2       47999999999987554


Q ss_pred             h
Q 029895          181 N  181 (186)
Q Consensus       181 ~  181 (186)
                      .
T Consensus        83 ~   83 (272)
T PRK00274         83 T   83 (272)
T ss_pred             h
Confidence            4

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.52  E-value=0.00024  Score=60.93  Aligned_cols=62  Identities=15%  Similarity=0.177  Sum_probs=48.0

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .|++.+++         ++.+++..+....-+|+|+|||+|.++..++..    ..       +++.||+++.+.+..++
T Consensus        10 nfl~d~~~---------~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~----~~-------~v~~vEid~~~~~~l~~   69 (258)
T PRK14896         10 HFLIDDRV---------VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR----AK-------KVYAIELDPRLAEFLRD   69 (258)
T ss_pred             cccCCHHH---------HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh----CC-------EEEEEECCHHHHHHHHH
Confidence            48887776         666666665555568999999999999998764    22       58999999999988665


Q ss_pred             hc
Q 029895          181 NC  182 (186)
Q Consensus       181 ~~  182 (186)
                      .+
T Consensus        70 ~~   71 (258)
T PRK14896         70 DE   71 (258)
T ss_pred             Hh
Confidence            44

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.45  E-value=0.00014  Score=62.40  Aligned_cols=62  Identities=21%  Similarity=0.321  Sum_probs=50.6

Q ss_pred             CCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895           99 EISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus        99 ~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .+.|++.+++         ++.|++..+......|+|+|||.|.|...+++..   .        +.+.||+++.+.+.=
T Consensus         9 gQnFL~~~~~---------~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~--------~v~~vE~d~~~~~~L   68 (262)
T PF00398_consen    9 GQNFLVDPNI---------ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---K--------RVIAVEIDPDLAKHL   68 (262)
T ss_dssp             TSSEEEHHHH---------HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---S--------EEEEEESSHHHHHHH
T ss_pred             CcCeeCCHHH---------HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---C--------cceeecCcHhHHHHH
Confidence            3458888777         7778777776677899999999999999998875   1        489999999998864


Q ss_pred             HH
Q 029895          179 ER  180 (186)
Q Consensus       179 ~~  180 (186)
                      ++
T Consensus        69 ~~   70 (262)
T PF00398_consen   69 KE   70 (262)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=97.45  E-value=0.00032  Score=55.93  Aligned_cols=54  Identities=24%  Similarity=0.359  Sum_probs=41.6

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ++.+++..+....-+|+|+|||+|.++..+++.    .       .+.+.||+|+.+.+..++++
T Consensus         2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~----~-------~~v~~vE~~~~~~~~~~~~~   55 (169)
T smart00650        2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER----A-------ARVTAIEIDPRLAPRLREKF   55 (169)
T ss_pred             HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc----C-------CeEEEEECCHHHHHHHHHHh
Confidence            456666665555568999999999999998764    1       25899999999988765543

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.39  E-value=0.00023  Score=57.09  Aligned_cols=69  Identities=17%  Similarity=0.273  Sum_probs=50.2

Q ss_pred             ccccccccchHH----HHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895          101 SWFTPVELFKPW----YAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       101 dF~Ts~eifsp~----Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      .|.|++.+|++-    =.++|+.++...    ..-+|+|+|||+|.++.-+...    .|     ..+.+.+|+|+...+
T Consensus         3 ~~~~~~gvFs~~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~----~~-----~~~v~~vDi~~~a~~   69 (170)
T PF05175_consen    3 EFITHPGVFSPPRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKR----GP-----DAKVTAVDINPDALE   69 (170)
T ss_dssp             EEEEETTSTTTTSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHT----ST-----CEEEEEEESBHHHHH
T ss_pred             EEEECCCeeCCCCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHh----CC-----CCEEEEEcCCHHHHH
Confidence            489999999843    223555555444    4558999999999999876543    34     245899999999988


Q ss_pred             HHHHhc
Q 029895          177 DTERNC  182 (186)
Q Consensus       177 ~Q~~~~  182 (186)
                      ..++++
T Consensus        70 ~a~~n~   75 (170)
T PF05175_consen   70 LAKRNA   75 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876654

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PHA03412 putative methyltransferase; Provisional

Probab=97.29  E-value=0.00044  Score=60.31  Aligned_cols=64  Identities=17%  Similarity=0.263  Sum_probs=45.9

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +|+||.+|         |+.+.. +. ....+|+|+|||+|.++..+....... +     ..+.+.||+++...+.-++
T Consensus        32 qFfTP~~i---------Ar~~~i-~~-~~~grVLDlG~GSG~Lalala~~~~~~-~-----~~~V~aVEID~~Al~~Ar~   94 (241)
T PHA03412         32 AFFTPIGL---------ARDFTI-DA-CTSGSVVDLCAGIGGLSFAMVHMMMYA-K-----PREIVCVELNHTYYKLGKR   94 (241)
T ss_pred             ccCCCHHH---------HHHHHH-hc-cCCCEEEEccChHHHHHHHHHHhcccC-C-----CcEEEEEECCHHHHHHHHh
Confidence            69999987         444431 21 125699999999999999987764211 1     2479999999998887554


Q ss_pred             h
Q 029895          181 N  181 (186)
Q Consensus       181 ~  181 (186)
                      +
T Consensus        95 n   95 (241)
T PHA03412         95 I   95 (241)
T ss_pred             h
Confidence            4

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.27  E-value=0.00059  Score=58.08  Aligned_cols=62  Identities=16%  Similarity=0.214  Sum_probs=47.2

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .|++..++         ++.+++..+....-+|+|+|||+|.++..+++..    +       .++.||+++.+.+.-++
T Consensus        10 ~fl~d~~i---------~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~----~-------~v~~iE~d~~~~~~l~~   69 (253)
T TIGR00755        10 NFLIDESV---------IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA----K-------KVTAIEIDPRLAEILRK   69 (253)
T ss_pred             ccCCCHHH---------HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC----C-------cEEEEECCHHHHHHHHH
Confidence            47777766         6677776655556689999999999999887753    3       38999999999887544


Q ss_pred             hc
Q 029895          181 NC  182 (186)
Q Consensus       181 ~~  182 (186)
                      .+
T Consensus        70 ~~   71 (253)
T TIGR00755        70 LL   71 (253)
T ss_pred             Hh
Confidence            43

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK06202 hypothetical protein; Provisional

Probab=97.20  E-value=0.0013  Score=54.81  Aligned_cols=49  Identities=14%  Similarity=0.230  Sum_probs=39.2

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...+.+|+|+|||+|.++..+.++.++..|     ..+++.||+||.+.+..++
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-----~~~v~gvD~s~~~l~~a~~  106 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGL-----RLEVTAIDPDPRAVAFARA  106 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCC-----CcEEEEEcCCHHHHHHHHh
Confidence            345679999999999999998888765544     2479999999999886433

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.13  E-value=0.0011  Score=58.61  Aligned_cols=61  Identities=18%  Similarity=0.292  Sum_probs=45.5

Q ss_pred             CccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          100 ISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +.|++.+.+         +..|++..+....-.|+|||||+|.|..-++..    ..       +.+.||+++.+.+.-+
T Consensus        16 QnFL~d~~i---------~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~----~~-------~V~avEiD~~li~~l~   75 (294)
T PTZ00338         16 QHILKNPLV---------LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL----AK-------KVIAIEIDPRMVAELK   75 (294)
T ss_pred             ccccCCHHH---------HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh----CC-------cEEEEECCHHHHHHHH
Confidence            358777766         566666665445568999999999999887763    22       4799999999998754


Q ss_pred             H
Q 029895          180 R  180 (186)
Q Consensus       180 ~  180 (186)
                      +
T Consensus        76 ~   76 (294)
T PTZ00338         76 K   76 (294)
T ss_pred             H
Confidence            4

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.04  E-value=0.0018  Score=56.06  Aligned_cols=83  Identities=17%  Similarity=0.241  Sum_probs=52.5

Q ss_pred             HHHHHHHH---hhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccc
Q 029895           87 YMKHVDKI---YKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNM  163 (186)
Q Consensus        87 y~~~~~~~---y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l  163 (186)
                      |+..+++.   .+.....|+||.+|         ++.|+.+......-+|+|-.||+|.+...+.+++++..  .-....
T Consensus        10 yE~~l~~~~~~~~k~~G~~~TP~~i---------~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~--~~~~~~   78 (311)
T PF02384_consen   10 YEYFLKKFAKESRKKLGQFYTPREI---------VDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKR--NKIKEI   78 (311)
T ss_dssp             HHHHHHHHHHCTTTSCGGC---HHH---------HHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCH--HHHCCE
T ss_pred             HHHHHHHHHHHhccccceeehHHHH---------HHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccc--cccccc
Confidence            45555544   23332379999998         55555555555566899999999999999999986432  112346


Q ss_pred             eEEEEecCcchHHHHHH
Q 029895          164 TYISVEIQSLTGRDTER  180 (186)
Q Consensus       164 ~Y~iVEiSp~L~~~Q~~  180 (186)
                      +++-+|+++......+.
T Consensus        79 ~i~G~ei~~~~~~la~~   95 (311)
T PF02384_consen   79 NIYGIEIDPEAVALAKL   95 (311)
T ss_dssp             EEEEEES-HHHHHHHHH
T ss_pred             eeEeecCcHHHHHHHHh
Confidence            78899999998876543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=97.02  E-value=0.0013  Score=55.70  Aligned_cols=44  Identities=16%  Similarity=0.218  Sum_probs=34.0

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      ...+|+|+|||+|.++..++..+.  .|     ..+++.||+||.+.+.-+
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~--~~-----~~~v~gvD~S~~ml~~A~   99 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIH--HD-----NCKIIAIDNSPAMIERCR   99 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcC--CC-----CCeEEEEeCCHHHHHHHH
Confidence            446899999999999887766542  22     357999999999988743

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.97  E-value=0.0022  Score=46.48  Aligned_cols=43  Identities=14%  Similarity=0.288  Sum_probs=34.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      .+|+|+|||+|.++..+++..    |     ..+.+-||+||.+.+..++..
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~----~-----~~~v~gvD~s~~~~~~a~~~~   45 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLF----P-----GARVVGVDISPEMLEIARERA   45 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHH----T-----TSEEEEEESSHHHHHHHHHHH
T ss_pred             CEEEEEcCcCCHHHHHHHhcC----C-----CCEEEEEeCCHHHHHHHHHHH
Confidence            489999999999999888821    2     246999999999998755543

...

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=96.95  E-value=0.0011  Score=48.22  Aligned_cols=40  Identities=20%  Similarity=0.324  Sum_probs=28.9

Q ss_pred             EEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          133 IYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       133 IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      |+|+|||+|+....+++.+ +..|     +.+++.||+|+.+-+.-
T Consensus         1 ILDlgcG~G~~~~~l~~~~-~~~~-----~~~~~gvD~s~~~l~~~   40 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRF-DAGP-----SSRVIGVDISPEMLELA   40 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----------SEEEEEES-HHHHHHH
T ss_pred             CEEeecCCcHHHHHHHHHh-hhcc-----cceEEEEECCHHHHHHH
Confidence            7999999999999999987 3333     25899999999997754

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.93  E-value=0.0014  Score=55.22  Aligned_cols=55  Identities=16%  Similarity=0.239  Sum_probs=44.1

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +|+-|....++...+-|+|+|||||-+.+.||.+-  ..|      ....+||.||.....-.
T Consensus        36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~g--v~~------~~L~~iE~~~dF~~~L~   90 (194)
T COG3963          36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRG--VRP------ESLTAIEYSPDFVCHLN   90 (194)
T ss_pred             HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcC--CCc------cceEEEEeCHHHHHHHH
Confidence            56777777777788899999999999999999974  334      25789999999877643

>PRK08317 hypothetical protein; Provisional

Probab=96.83  E-value=0.0037  Score=50.38  Aligned_cols=56  Identities=9%  Similarity=0.167  Sum_probs=41.1

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +-.++.+......+.+|+|+|||+|.++..+.+.+   .|     ..+++.||+|+.+.+..++
T Consensus         7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~---~~-----~~~v~~~d~~~~~~~~a~~   62 (241)
T PRK08317          7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRV---GP-----EGRVVGIDRSEAMLALAKE   62 (241)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhc---CC-----CcEEEEEeCCHHHHHHHHH
Confidence            33445555555566799999999999999888764   23     2479999999998775433

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.80  E-value=0.0094  Score=46.57  Aligned_cols=60  Identities=12%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          113 YAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       113 Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      |++.|...+...........|||+|+|.|.|+.-+..+|.+..+     .++.+.||.++.+.+.
T Consensus         9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~-----~~~v~~iD~~~~~~~~   68 (141)
T PF13679_consen    9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSP-----NLRVLGIDCNESLVES   68 (141)
T ss_pred             HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCC-----CCeEEEEECCcHHHHH
Confidence            44444444333233466789999999999999999998876533     5689999999998764

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.80  E-value=0.0048  Score=45.01  Aligned_cols=50  Identities=18%  Similarity=0.225  Sum_probs=36.7

Q ss_pred             HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .+...+......+|+|+|||+|.++..+++..    | .    .+++.||+|+...+.-
T Consensus        10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~----~-~----~~v~~vD~s~~~~~~a   59 (124)
T TIGR02469        10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLV----P-N----GRVYAIERNPEALRLI   59 (124)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC----C-C----ceEEEEcCCHHHHHHH
Confidence            34444444444599999999999999887642    3 1    4799999999988763

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.76  E-value=0.00064  Score=48.88  Aligned_cols=34  Identities=24%  Similarity=0.532  Sum_probs=27.5

Q ss_pred             EEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895          134 YEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       134 vEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      +|+|||+|.++..|++.+    |     ..+|+.+|+||.+.+
T Consensus         1 LdiGcG~G~~~~~l~~~~----~-----~~~~~~~D~s~~~l~   34 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL----P-----DARYTGVDISPSMLE   34 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC----------EEEEEEEESSSSTTS
T ss_pred             CEeCccChHHHHHHHHhC----C-----CCEEEEEECCHHHHH
Confidence            699999999999999886    2     358999999999884

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=96.73  E-value=0.0035  Score=48.71  Aligned_cols=44  Identities=18%  Similarity=0.234  Sum_probs=34.1

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +..+|+|+|||+|.++..+++.+   .     ...+++.||+|+.+.+.-++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~---~-----~~~~i~gvD~s~~~i~~a~~   46 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKEL---N-----PGAKIIGVDISEEMIEYAKK   46 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHS---T-----TTSEEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEecCcCcHHHHHHHHhc---C-----CCCEEEEEECcHHHHHHhhc
Confidence            45799999999999999888722   2     23479999999999987544

...

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=96.70  E-value=0.0047  Score=50.91  Aligned_cols=48  Identities=8%  Similarity=0.097  Sum_probs=35.7

Q ss_pred             HhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          124 TANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       124 ~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      .+.....-+|+|+|||+|.++..+.+.+.   |     ..+++.||+|+.+.+.-+
T Consensus        40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~---~-----~~~v~gvD~s~~~~~~a~   87 (231)
T TIGR02752        40 RMNVQAGTSALDVCCGTADWSIALAEAVG---P-----EGHVIGLDFSENMLSVGR   87 (231)
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHhC---C-----CCEEEEEECCHHHHHHHH
Confidence            33444456999999999999988777542   2     246999999998877643

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.67  E-value=0.003  Score=55.60  Aligned_cols=60  Identities=18%  Similarity=0.297  Sum_probs=47.2

Q ss_pred             CccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          100 ISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +.|++...+         ...|++..+....-.|+|||||.|.|..-+++-.    .       +++.||+.+.|++.-+
T Consensus        10 QnFL~d~~v---------~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~----~-------~v~aiEiD~~l~~~L~   69 (259)
T COG0030          10 QNFLIDKNV---------IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA----A-------RVTAIEIDRRLAEVLK   69 (259)
T ss_pred             cccccCHHH---------HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc----C-------eEEEEEeCHHHHHHHH
Confidence            458777655         7777777765556799999999999999888753    2       4799999999999643

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.66  E-value=0.005  Score=50.89  Aligned_cols=54  Identities=22%  Similarity=0.158  Sum_probs=38.1

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .++.+.......-+|+|+|||+|.++.-+.+.+..        .-+++.||+|+.+.+.-++
T Consensus        62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~--------~g~V~~iD~~~~~~~~a~~  115 (205)
T PRK13944         62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIER--------RGKVYTVEIVKELAIYAAQ  115 (205)
T ss_pred             HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCC--------CCEEEEEeCCHHHHHHHHH
Confidence            34445554444568999999999999777665421        1268999999999876443

>TIGR03438 probable methyltransferase

Probab=96.65  E-value=0.0038  Score=54.73  Aligned_cols=40  Identities=20%  Similarity=0.409  Sum_probs=33.0

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      .+.+|+|+|||+|+.+.-+++.+.+  +      .+|+.||+|+.+-+
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~--~------~~~~~iDiS~~mL~  102 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQ--P------ARYVPIDISADALK  102 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhcc--C------CeEEEEECCHHHHH
Confidence            3458999999999999999998743  1      36999999998744

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.60  E-value=0.0053  Score=51.19  Aligned_cols=55  Identities=20%  Similarity=0.262  Sum_probs=39.2

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..+++.......-+|+|+|||+|.++.-+.+.+..        ..+.+.||+++.+.+.-+++
T Consensus        66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~--------~~~V~~vE~~~~~~~~a~~~  120 (212)
T PRK13942         66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK--------SGKVVTIERIPELAEKAKKT  120 (212)
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCC--------CCEEEEEeCCHHHHHHHHHH
Confidence            33444444445569999999999999776665421        23689999999999875544

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=96.58  E-value=0.0083  Score=48.35  Aligned_cols=55  Identities=13%  Similarity=0.202  Sum_probs=39.3

Q ss_pred             HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      .+...++.........+|+|+|||+|.++..+...    .|     ..+++.||+|+...+.-+
T Consensus        18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~----~~-----~~~v~~vD~s~~~~~~a~   72 (187)
T PRK08287         18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQ----FP-----SLQVTAIERNPDALRLIK   72 (187)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHH----CC-----CCEEEEEECCHHHHHHHH
Confidence            33444445555555669999999999999988754    23     247999999998776543

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=96.58  E-value=0.0077  Score=50.54  Aligned_cols=56  Identities=9%  Similarity=0.086  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.+|+.+++........+|+|+|||+|.++..+.    +..       .+++.||+|+.+.+..++.
T Consensus        28 ~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~----~~~-------~~v~~~D~s~~~l~~a~~~   83 (251)
T PRK10258         28 RQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWR----ERG-------SQVTALDLSPPMLAQARQK   83 (251)
T ss_pred             HHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHH----HcC-------CeEEEEECCHHHHHHHHhh
Confidence            3455555555543345689999999999876543    211       3689999999988865443

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=96.57  E-value=0.0076  Score=45.79  Aligned_cols=49  Identities=18%  Similarity=0.301  Sum_probs=34.0

Q ss_pred             HHHHHHHhC-CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          118 AEAIMRTAN-LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       118 A~~i~~~~~-~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      +..+.+... .....+|+|+|||+|.++..+    ++..       .+++.||+|+.+.+.
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l----~~~~-------~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRAL----AKRG-------FEVTGVDISPQMIEK   59 (161)
T ss_dssp             HHHHHHHHTCTTTTSEEEEESSTTSHHHHHH----HHTT-------SEEEEEESSHHHHHH
T ss_pred             HHHHHHHhcccCCCCEEEEEcCCCCHHHHHH----HHhC-------CEEEEEECCHHHHhh
Confidence            333433442 456679999999999876665    3322       279999999987754

...

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.53  E-value=0.0087  Score=50.32  Aligned_cols=54  Identities=13%  Similarity=0.267  Sum_probs=38.6

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ++.++..+......+|+|+|||+|.++..+.+.    .|     ..+++.||+|+.+.+.-++
T Consensus        20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~----~~-----~~~v~gvD~s~~~i~~a~~   73 (258)
T PRK01683         20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVER----WP-----AARITGIDSSPAMLAEARS   73 (258)
T ss_pred             HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHH----CC-----CCEEEEEECCHHHHHHHHH
Confidence            445555554455679999999999998766543    23     2478999999998876433

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=96.50  E-value=0.0025  Score=52.67  Aligned_cols=60  Identities=17%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      |.+|.....|....-.  ...+|+|+|||+|.++..+...    .|     ..+++.||+|+.+.+..++.
T Consensus        24 ~~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~----~p-----~~~v~gVD~s~~~i~~a~~~   83 (202)
T PRK00121         24 PRLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKA----NP-----DINFIGIEVHEPGVGKALKK   83 (202)
T ss_pred             hhhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHH----CC-----CccEEEEEechHHHHHHHHH
Confidence            5555555544433323  4568999999999999988654    23     24699999999988875543

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.48  E-value=0.01  Score=48.22  Aligned_cols=63  Identities=21%  Similarity=0.302  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      |.--..+...++........-+|+|+|||+|.++..+...    .|     ..+.+.||+||.+.+.-+++|
T Consensus        22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~----~~-----~~~V~~vD~s~~~~~~a~~n~   84 (196)
T PRK07402         22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLL----CP-----KGRVIAIERDEEVVNLIRRNC   84 (196)
T ss_pred             CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH----CC-----CCEEEEEeCCHHHHHHHHHHH
Confidence            3333444445555555445568999999999998877543    23     236899999999988755544

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.47  E-value=0.023  Score=47.11  Aligned_cols=42  Identities=12%  Similarity=0.077  Sum_probs=32.9

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      ...+|+|+|||+|.++..+...    .|     ..+++.||+|+.+.+.-+
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~----~~-----~~~V~giD~s~~~l~~A~   86 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIA----RP-----ELKVTLVDSLGKKIAFLR   86 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHH----CC-----CCeEEEEeCcHHHHHHHH
Confidence            3679999999999988877763    23     247999999998887543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=96.46  E-value=0.011  Score=47.99  Aligned_cols=53  Identities=8%  Similarity=0.086  Sum_probs=38.0

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ++..+......+|+|+|||+|.++..++...    |    ...+++.+|+|+.+.+.-++.
T Consensus        43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~----~----~~~~v~~~D~s~~~~~~a~~~   95 (239)
T PRK00216         43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAV----G----KTGEVVGLDFSEGMLAVGREK   95 (239)
T ss_pred             HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHc----C----CCCeEEEEeCCHHHHHHHHHh
Confidence            3333433345799999999999998887764    2    135799999999887764443

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.44  E-value=0.0087  Score=49.56  Aligned_cols=55  Identities=24%  Similarity=0.277  Sum_probs=38.8

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..+++.+......+|+|+|||+|.++.-+.+...   +     ..+++-||+|+.+.+.-+++
T Consensus        67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~---~-----~g~V~~vD~~~~~~~~A~~~  121 (215)
T TIGR00080        67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVG---R-----DGLVVSIERIPELAEKAERR  121 (215)
T ss_pred             HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhC---C-----CCEEEEEeCCHHHHHHHHHH
Confidence            3444555555566999999999999986665431   1     23588999999998875443

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.43  E-value=0.017  Score=48.94  Aligned_cols=43  Identities=19%  Similarity=0.388  Sum_probs=32.9

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.+.+|+|+|||+|.++..+...    .       .+++.||+|+.+.+.-++.
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~----g-------~~v~~vD~s~~~l~~a~~~   85 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL----G-------HQVILCDLSAEMIQRAKQA   85 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc----C-------CEEEEEECCHHHHHHHHHH
Confidence            45579999999999988776542    2       2689999999988864443

>TIGR00740 methyltransferase, putative

Probab=96.42  E-value=0.0048  Score=51.58  Aligned_cols=45  Identities=16%  Similarity=0.282  Sum_probs=35.3

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...+|+|+|||+|.++..+++.+.  .|     ..+++.||+|+.+.+.-++
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~--~p-----~~~v~gvD~s~~ml~~a~~   97 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNIN--QP-----NVKIIGIDNSQPMVERCRQ   97 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcC--CC-----CCeEEEEeCCHHHHHHHHH
Confidence            445899999999999988877642  22     3589999999999876544

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=96.40  E-value=0.016  Score=49.84  Aligned_cols=49  Identities=10%  Similarity=0.095  Sum_probs=34.3

Q ss_pred             HHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          122 MRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       122 ~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .+..+.....+|+|+|||+|.++..+.+..   .|     ..+++-||+|+.+.+.-
T Consensus        66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~---~~-----~~~V~gvD~S~~ml~~A  114 (261)
T PLN02233         66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKV---GS-----DGKVMGLDFSSEQLAVA  114 (261)
T ss_pred             HHHhCCCCCCEEEEECCcCCHHHHHHHHHh---CC-----CCEEEEEECCHHHHHHH
Confidence            333344456799999999999876554432   22     23689999999988763

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=96.38  E-value=0.016  Score=47.60  Aligned_cols=60  Identities=22%  Similarity=0.228  Sum_probs=40.2

Q ss_pred             cccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          102 WFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       102 F~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +++++++         ..++.+........+|+|+|||+|.++. +|..+   ..       +.+.||+|+.+.+.-++.
T Consensus        60 ~~~~p~~---------~~~l~~~l~~~~~~~VLeiG~GsG~~t~-~la~~---~~-------~v~~vd~~~~~~~~a~~~  119 (212)
T PRK00312         60 TISQPYM---------VARMTELLELKPGDRVLEIGTGSGYQAA-VLAHL---VR-------RVFSVERIKTLQWEAKRR  119 (212)
T ss_pred             eeCcHHH---------HHHHHHhcCCCCCCEEEEECCCccHHHH-HHHHH---hC-------EEEEEeCCHHHHHHHHHH
Confidence            5666655         3444445555556799999999999986 33332   12       478899999988765443

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=96.31  E-value=0.012  Score=49.03  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=33.7

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +.+-+|+|+|||+|.++..+...+    |     ..+++-||+|+.+.+.-++
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~----~-----~~~v~giDiS~~~l~~A~~   85 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLL----P-----FKHIYGVEINEYAVEKAKA   85 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhC----C-----CCeEEEEECCHHHHHHHHh
Confidence            345589999999999888775542    2     2479999999998887544

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=96.26  E-value=0.014  Score=50.09  Aligned_cols=69  Identities=13%  Similarity=0.291  Sum_probs=45.7

Q ss_pred             cccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          102 WFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       102 F~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      |+.+. .|.| ..+.++..+.+... ....+|+|+|||+|.++..+.+.+....      ..+.+-||+|+.+.+.-.
T Consensus        61 fl~~g-~y~~-l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~------~~~v~giD~s~~~l~~A~  129 (272)
T PRK11088         61 FLDAG-HYQP-LRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEIT------TMQLFGLDISKVAIKYAA  129 (272)
T ss_pred             HHHCC-ChHH-HHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhccccc------CCeEEEECCCHHHHHHHH
Confidence            55443 3344 33556666655442 2345799999999999999987653211      246899999999887643

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=96.23  E-value=0.015  Score=47.03  Aligned_cols=55  Identities=16%  Similarity=0.435  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhC---CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          116 GIAEAIMRTAN---LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       116 ~lA~~i~~~~~---~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      .+++.+.+.+.   ...+.+|+|+|||+|.+...+++..    |     ..+++.||+|+...+..+
T Consensus        18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~----~-----~~~~~~~D~~~~~~~~~~   75 (240)
T TIGR02072        18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF----P-----QAEFIALDISAGMLAQAK   75 (240)
T ss_pred             HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC----C-----CCcEEEEeChHHHHHHHH
Confidence            34455544442   2445789999999999877665542    3     235999999998876543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.22  E-value=0.015  Score=49.03  Aligned_cols=58  Identities=24%  Similarity=0.361  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.+..++........+.+|+|+|||+|.++..++..+    |     ..+++.+|+|+...+.-+++
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~----~-----~~~v~~iDis~~~l~~a~~n  151 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER----P-----DAEVTAVDISPEALAVARRN  151 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC----C-----CCEEEEEECCHHHHHHHHHH
Confidence            4555555544444456789999999999998887664    3     24799999999887764443

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.17  E-value=0.011  Score=55.54  Aligned_cols=73  Identities=14%  Similarity=0.150  Sum_probs=49.3

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhC---CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTAN---LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~---~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      .|+||++|     ++.++..+....+   .....+|+|.+||+|.+...+++.+..... ..-...+.+.+|+++...+.
T Consensus         5 qfyTP~~i-----a~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~-~~~~~~~i~g~DId~~a~~~   78 (524)
T TIGR02987         5 TFFTPPDI-----AKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINY-FKEVELNIYFADIDKTLLKR   78 (524)
T ss_pred             ccCCcHHH-----HHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCC-cccceeeeeeechhHHHHHH
Confidence            69999999     3333333332221   114569999999999999999999865332 11123577889999988776


Q ss_pred             HH
Q 029895          178 TE  179 (186)
Q Consensus       178 Q~  179 (186)
                      -+
T Consensus        79 a~   80 (524)
T TIGR02987        79 AK   80 (524)
T ss_pred             HH
Confidence            43

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=96.15  E-value=0.025  Score=46.15  Aligned_cols=51  Identities=12%  Similarity=0.160  Sum_probs=35.2

Q ss_pred             HHHHHHHHhC----CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          117 IAEAIMRTAN----LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       117 lA~~i~~~~~----~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ...++...+.    +..+.+|+|+|||+|.++..+.+.    .+       +++.||+|+.+.+.-
T Consensus        29 ~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~----~~-------~v~~iD~s~~~~~~a   83 (224)
T TIGR01983        29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL----GA-------NVTGIDASEENIEVA   83 (224)
T ss_pred             HHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc----CC-------eEEEEeCCHHHHHHH
Confidence            3445554442    245679999999999988765432    22       489999999886653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=96.10  E-value=0.012  Score=47.34  Aligned_cols=52  Identities=13%  Similarity=0.160  Sum_probs=37.6

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +.+......+.+|+|+|||+|.++..++...    | .   ..+++.+|+|+...+.-++
T Consensus        31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~----~-~---~~~~~~iD~~~~~~~~~~~   82 (223)
T TIGR01934        31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSA----P-D---RGKVTGVDFSSEMLEVAKK   82 (223)
T ss_pred             HHHHhccCCCCeEEEeCCCCChhHHHHHHhc----C-C---CceEEEEECCHHHHHHHHH
Confidence            3344444466799999999999988876654    3 1   2579999999988776433

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK05785 hypothetical protein; Provisional

Probab=96.09  E-value=0.048  Score=46.00  Aligned_cols=40  Identities=10%  Similarity=0.185  Sum_probs=31.4

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +.+|+|+|||+|.++..+.+..          ..+++-||+|+.+.+..+
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~----------~~~v~gvD~S~~Ml~~a~   91 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF----------KYYVVALDYAENMLKMNL   91 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc----------CCEEEEECCCHHHHHHHH
Confidence            5699999999999987765432          136899999999988753

>TIGR00477 tehB tellurite resistance protein TehB

Probab=96.09  E-value=0.016  Score=47.59  Aligned_cols=39  Identities=13%  Similarity=0.113  Sum_probs=30.3

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ..+.+|+|+|||+|.++.-+..    ..       .+.+.||+|+.+.+.
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~----~g-------~~V~~iD~s~~~l~~   67 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSL----AG-------YDVRAWDHNPASIAS   67 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHH----CC-------CeEEEEECCHHHHHH
Confidence            3456999999999999986654    11       257899999987775

Part of a tellurite-reducing operon tehA and tehB

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.08  E-value=0.043  Score=47.95  Aligned_cols=72  Identities=18%  Similarity=0.148  Sum_probs=44.5

Q ss_pred             ccccccccchH--HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          101 SWFTPVELFKP--WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       101 dF~Ts~eifsp--~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      +|...+.+|-|  ...+.+...+........+.+|+|+|||+|.++..+....    |     ..+.+.||+|+...+.-
T Consensus        91 ~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~----~-----~~~v~avDis~~al~~A  161 (284)
T TIGR03533        91 EFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF----P-----EAEVDAVDISPDALAVA  161 (284)
T ss_pred             EEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC----C-----CCEEEEEECCHHHHHHH
Confidence            34444444333  2333333333222232334689999999999998887643    3     24689999999988765


Q ss_pred             HHh
Q 029895          179 ERN  181 (186)
Q Consensus       179 ~~~  181 (186)
                      +++
T Consensus       162 ~~n  164 (284)
T TIGR03533       162 EIN  164 (284)
T ss_pred             HHH
Confidence            443

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.03  E-value=0.019  Score=48.95  Aligned_cols=64  Identities=22%  Similarity=0.240  Sum_probs=48.1

Q ss_pred             ccccccccchHHHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ++-||+++         |.+|+...   +.-..-.|+++|||||.|+...+-.    .|      .+.+.||+.|...+.
T Consensus        23 QY~Tp~~~---------Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l----Ga------~~V~~vdiD~~a~ei   83 (198)
T COG2263          23 QYRTPAPL---------AAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL----GA------SRVLAVDIDPEALEI   83 (198)
T ss_pred             ecCCChHH---------HHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc----CC------cEEEEEecCHHHHHH
Confidence            68999988         66665554   3333447999999999999775432    23      467899999999998


Q ss_pred             HHHhcc
Q 029895          178 TERNCW  183 (186)
Q Consensus       178 Q~~~~~  183 (186)
                      -+++|.
T Consensus        84 ~r~N~~   89 (198)
T COG2263          84 ARANAE   89 (198)
T ss_pred             HHHHHH
Confidence            888775

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.02  E-value=0.015  Score=47.60  Aligned_cols=50  Identities=20%  Similarity=0.141  Sum_probs=37.3

Q ss_pred             HhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          124 TANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       124 ~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..+....-+|+|+|||+|.++..++..+.   +     ..+++.||+|+...+..+++
T Consensus        35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~---~-----~~~v~avD~~~~~~~~a~~n   84 (198)
T PRK00377         35 KLRLRKGDMILDIGCGTGSVTVEASLLVG---E-----TGKVYAVDKDEKAINLTRRN   84 (198)
T ss_pred             HcCCCCcCEEEEeCCcCCHHHHHHHHHhC---C-----CCEEEEEECCHHHHHHHHHH
Confidence            33555556999999999999998877642   2     23689999999988864443

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=95.99  E-value=0.011  Score=43.24  Aligned_cols=42  Identities=21%  Similarity=0.200  Sum_probs=35.0

Q ss_pred             ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      .+|+|+|||+|+++..+++..          ..+++.||++|...+..+++.
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~----------~~~~~gvdi~~~~~~~a~~~~   43 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG----------AARVTGVDIDPEAVELARRNL   43 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC----------TCEEEEEESSHHHHHHHHHHC
T ss_pred             CEEEEcCcchHHHHHHHHHHC----------CCeEEEEEECHHHHHHHHHHH
Confidence            589999999999999988774          136899999999998876644

...

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.97  E-value=0.02  Score=48.36  Aligned_cols=49  Identities=8%  Similarity=0.164  Sum_probs=35.6

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ++.......+-+|+|+|||+|.++..+...    .|     ..+++-||+|+.+.+..
T Consensus        21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~----~p-----~~~v~gvD~s~~~~~~a   69 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGPGNLTRYLARR----WP-----GAVIEALDSSPEMVAAA   69 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCCCHHHHHHHHH----CC-----CCEEEEEECCHHHHHHH
Confidence            334444445579999999999998766553    24     24689999999988764

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=95.91  E-value=0.019  Score=51.60  Aligned_cols=57  Identities=21%  Similarity=0.272  Sum_probs=42.7

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH-HHHhcccc
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD-TERNCWTS  185 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~-Q~~~~~~~  185 (186)
                      ..+|++-.....+-.|+|+|+|||.|...+|+.-+           +.+.+|+.|++... +++..+|.
T Consensus        47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-----------kVvA~E~Dprmvael~krv~gtp  104 (315)
T KOG0820|consen   47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-----------KVVAVEIDPRMVAELEKRVQGTP  104 (315)
T ss_pred             HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-----------eEEEEecCcHHHHHHHHHhcCCC
Confidence            34444444444556899999999999999998742           47899999999874 77776664

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=95.90  E-value=0.028  Score=46.33  Aligned_cols=40  Identities=13%  Similarity=0.135  Sum_probs=31.4

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ....+|+|+|||+|.++.-+.+.    .       .+++.||+|+.+.+..
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~----~-------~~v~gvD~s~~~i~~a   93 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR----G-------AIVKAVDISEQMVQMA   93 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC----C-------CEEEEEECCHHHHHHH
Confidence            45679999999999988876542    2       2578999999988764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=95.85  E-value=0.027  Score=46.05  Aligned_cols=42  Identities=14%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ....+|+|+|||+|.++..++..    .+       +++.||+|+.+.+.-++
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~----~~-------~v~~~D~s~~~i~~a~~  103 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARR----GA-------KVVASDISPQMVEEARE  103 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHc----CC-------EEEEEECCHHHHHHHHH
Confidence            45579999999999998776532    22       59999999998776433

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=95.85  E-value=0.026  Score=45.20  Aligned_cols=42  Identities=21%  Similarity=0.399  Sum_probs=32.0

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+-+|+|+|||+|.++..+...    .+       +.+.||+||.+.+.-+++
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~----~~-------~v~~vD~s~~~~~~a~~~   60 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGK----GK-------CILTTDINPFAVKELREN   60 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhc----CC-------EEEEEECCHHHHHHHHHH
Confidence            3457999999999998876642    22       688999999998864443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=95.80  E-value=0.03  Score=46.24  Aligned_cols=56  Identities=23%  Similarity=0.380  Sum_probs=39.6

Q ss_pred             HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+..++..... ..+.+|+|+|||+|.++..++...    |     ..+++.||+|+...+.-+++
T Consensus        75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~----~-----~~~v~~iD~~~~~~~~a~~~  130 (251)
T TIGR03534        75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKER----P-----DARVTAVDISPEALAVARKN  130 (251)
T ss_pred             HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHC----C-----CCEEEEEECCHHHHHHHHHH
Confidence            34444444442 344689999999999998887643    3     24789999999998875443

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=95.78  E-value=0.05  Score=47.05  Aligned_cols=131  Identities=8%  Similarity=0.086  Sum_probs=69.0

Q ss_pred             eeecCC-CChhHHHHHhhhhhCCCceeHHHHHHHhhcCCCCc---cccCCCccccCCCcccccccccChHHHHHHHHHHh
Q 029895           20 LIAVNP-CQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHG---YFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIY   95 (186)
Q Consensus        20 ~~~~~~-~~~~l~~~~~~~I~~~~~i~frdFM~~aLY~p~~G---YY~~~~~~iG~~G~~~Df~~l~~~~~y~~~~~~~y   95 (186)
                      ++.+.+ ....++.-+..++...+--++.+|.+....+++..   -.-.. -.++..                       
T Consensus        16 Gi~~~~~k~~~l~~rl~~r~~~~~~~~~~~y~~~l~~~~~~~e~~~l~~~-lti~~T-----------------------   71 (264)
T smart00138       16 GIVLTDYKRTLLQSRLSRRLRVLGLKDFSEYLELLTSHRGEEELAELLDL-MTTNET-----------------------   71 (264)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCcHHHHHHHHHH-hhcCCC-----------------------
Confidence            344443 44566677777677677678888888777654100   00000 023333                       


Q ss_pred             hhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895           96 KQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG  175 (186)
Q Consensus        96 ~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~  175 (186)
                           .|+=-++.|.-+-..++ ..+........+++|+++|||+|.-+-.|.-.+.+..+.....+.+++-+|+|+.+-
T Consensus        72 -----~FfR~~~~~~~l~~~vl-p~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L  145 (264)
T smart00138       72 -----RFFRESKHFEALEEKVL-PLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL  145 (264)
T ss_pred             -----cccCCcHHHHHHHHHHh-HHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH
Confidence                 25543333232222222 222222223456899999999997444443333333220111246899999999877


Q ss_pred             HHHHH
Q 029895          176 RDTER  180 (186)
Q Consensus       176 ~~Q~~  180 (186)
                      ++-++
T Consensus       146 ~~Ar~  150 (264)
T smart00138      146 EKARA  150 (264)
T ss_pred             HHHHc
Confidence            75433

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.76  E-value=0.073  Score=47.22  Aligned_cols=88  Identities=15%  Similarity=0.124  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhhhcCC-------------ccccccccchH--HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHH
Q 029895           85 KAYMKHVDKIYKQSEI-------------SWFTPVELFKP--WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMD  149 (186)
Q Consensus        85 ~~y~~~~~~~y~~~~~-------------dF~Ts~eifsp--~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~  149 (186)
                      ..|.+.+.++-+.+++             +|...+.+|-|  -..+.+...+........+.+|+|+|||+|.++..+..
T Consensus        74 ~~~~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~  153 (307)
T PRK11805         74 ARILELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAY  153 (307)
T ss_pred             HHHHHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHH
Confidence            4566777777543332             44444433333  23344444333222322235899999999999988765


Q ss_pred             HHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          150 YIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       150 ~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .    .|     ..+.+.||+|+...+.-+++
T Consensus       154 ~----~p-----~~~V~avDis~~al~~A~~n  176 (307)
T PRK11805        154 A----FP-----DAEVDAVDISPDALAVAEIN  176 (307)
T ss_pred             H----CC-----CCEEEEEeCCHHHHHHHHHH
Confidence            4    23     24789999999988875544

>PHA03411 putative methyltransferase; Provisional

Probab=95.76  E-value=0.014  Score=52.05  Aligned_cols=61  Identities=18%  Similarity=0.231  Sum_probs=42.1

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .|+||..+ --.|       +.   .....-+|+|+|||+|.++..++...    +     ..+.+.||+||.+.+..++
T Consensus        47 ~FfTP~~i-~~~f-------~~---~~~~~grVLDLGcGsGilsl~la~r~----~-----~~~V~gVDisp~al~~Ar~  106 (279)
T PHA03411         47 AFFTPEGL-AWDF-------TI---DAHCTGKVLDLCAGIGRLSFCMLHRC----K-----PEKIVCVELNPEFARIGKR  106 (279)
T ss_pred             eEcCCHHH-HHHH-------Hh---ccccCCeEEEcCCCCCHHHHHHHHhC----C-----CCEEEEEECCHHHHHHHHH
Confidence            59999988 3222       11   11123489999999999887765531    1     1368999999999987655


Q ss_pred             h
Q 029895          181 N  181 (186)
Q Consensus       181 ~  181 (186)
                      +
T Consensus       107 n  107 (279)
T PHA03411        107 L  107 (279)
T ss_pred             h
Confidence            3

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=95.73  E-value=0.065  Score=44.25  Aligned_cols=49  Identities=10%  Similarity=0.138  Sum_probs=35.0

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .++..........+|+|+|||+|.++..+...    .       .+++.||+|+...+.-
T Consensus        38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~-------~~v~~iD~s~~~~~~a   86 (233)
T PRK05134         38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL----G-------ADVTGIDASEENIEVA   86 (233)
T ss_pred             HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc----C-------CeEEEEcCCHHHHHHH
Confidence            34444444455679999999999998766542    2       2589999999887653

>PLN02244 tocopherol O-methyltransferase

Probab=95.64  E-value=0.07  Score=47.67  Aligned_cols=43  Identities=12%  Similarity=0.265  Sum_probs=32.9

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ....+|+|+|||+|.++..+....   .       .+++-||+|+.+.+.-++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~---g-------~~v~gvD~s~~~i~~a~~  159 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY---G-------ANVKGITLSPVQAARANA  159 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc---C-------CEEEEEECCHHHHHHHHH
Confidence            345689999999999988776532   1       368999999998776433

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=95.58  E-value=0.12  Score=42.33  Aligned_cols=40  Identities=18%  Similarity=0.144  Sum_probs=30.4

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ..+|+|+|||+|.++..+...    .|     ..+.+.||+|+.+.+.-
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~----~~-----~~~V~~iD~s~~~~~~a   82 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIA----RP-----ELKLTLLESNHKKVAFL   82 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHH----CC-----CCeEEEEeCcHHHHHHH
Confidence            568999999999988877532    23     24689999999876643

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=95.52  E-value=0.018  Score=47.16  Aligned_cols=40  Identities=20%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ...|+|||||+|.++..+...    .| +    .+++-||+|+.+.+.-
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~----~p-~----~~v~gvD~~~~~l~~a   56 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQ----NP-D----KNFLGIEIHTPIVLAA   56 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHh----CC-C----CCEEEEEeeHHHHHHH
Confidence            458999999999998877753    35 3    4699999999887653

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=95.48  E-value=0.049  Score=46.80  Aligned_cols=72  Identities=17%  Similarity=0.180  Sum_probs=47.4

Q ss_pred             cccccccchHH-HHHHHHHHHHHHhC-CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          102 WFTPVELFKPW-YAHGIAEAIMRTAN-LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       102 F~Ts~eifsp~-Fg~~lA~~i~~~~~-~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      |..++..|-|- =.+.+.+.+..... .+.+.+|+|+|||+|.++..+....    | .    .+.+.||+||...+..+
T Consensus        57 ~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~----~-~----~~v~~vDis~~al~~A~  127 (251)
T TIGR03704        57 IAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL----D-G----IELHAADIDPAAVRCAR  127 (251)
T ss_pred             EEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC----C-C----CEEEEEECCHHHHHHHH
Confidence            55555554431 23556666655443 2334589999999999998887653    2 1    35789999999988765


Q ss_pred             Hhc
Q 029895          180 RNC  182 (186)
Q Consensus       180 ~~~  182 (186)
                      +++
T Consensus       128 ~N~  130 (251)
T TIGR03704       128 RNL  130 (251)
T ss_pred             HHH
Confidence            543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=95.47  E-value=0.023  Score=38.23  Aligned_cols=38  Identities=18%  Similarity=0.392  Sum_probs=29.0

Q ss_pred             eEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          132 KIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       132 ~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +|+|+|||.|.++..++.     .+     ..+++.+|+|+...+..+
T Consensus         1 ~ildig~G~G~~~~~~~~-----~~-----~~~~~~~d~~~~~~~~~~   38 (107)
T cd02440           1 RVLDLGCGTGALALALAS-----GP-----GARVTGVDISPVALELAR   38 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-----CC-----CCEEEEEeCCHHHHHHHH
Confidence            489999999998877766     11     247999999998766533

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=95.44  E-value=0.036  Score=49.88  Aligned_cols=48  Identities=10%  Similarity=0.176  Sum_probs=36.4

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc-hHHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL-TGRDTER  180 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~-L~~~Q~~  180 (186)
                      +....|||+|||+|+=.+-+|+.+.....     .++|+-||||.. |.+..++
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~-----~~~Y~plDIS~~~L~~a~~~  123 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKK-----SVDYYALDVSRSELQRTLAE  123 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCC-----CceEEEEECCHHHHHHHHHh
Confidence            34458999999999999999999975432     268999999974 4443443

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.41  E-value=0.027  Score=38.76  Aligned_cols=37  Identities=16%  Similarity=0.300  Sum_probs=27.8

Q ss_pred             EEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          134 YEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       134 vEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +|+|||+|..+.-+.+.    ..      .+++.+|+|+...+.-++
T Consensus         1 LdiG~G~G~~~~~l~~~----~~------~~v~~~D~~~~~~~~~~~   37 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR----GG------ASVTGIDISEEMLEQARK   37 (95)
T ss_dssp             EEET-TTSHHHHHHHHT----TT------CEEEEEES-HHHHHHHHH
T ss_pred             CEecCcCCHHHHHHHhc----cC------CEEEEEeCCHHHHHHHHh
Confidence            69999999999988776    11      379999999997776444

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=95.39  E-value=0.055  Score=46.57  Aligned_cols=63  Identities=16%  Similarity=0.192  Sum_probs=44.2

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +|+.|-.+ .+      ...++..++.....+|+|+|||+|.++..+...    .      ..+++.||+|+.+.+..++
T Consensus        31 ~~~~~gg~-~~------~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~----~------~~~v~giD~s~~~~~~a~~   93 (263)
T PTZ00098         31 DYISSGGI-EA------TTKILSDIELNENSKVLDIGSGLGGGCKYINEK----Y------GAHVHGVDICEKMVNIAKL   93 (263)
T ss_pred             CCCCCCch-HH------HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhh----c------CCEEEEEECCHHHHHHHHH
Confidence            36666655 22      455666666666679999999999988766431    1      2479999999998776544

>PRK14967 putative methyltransferase; Provisional

Probab=95.39  E-value=0.045  Score=45.55  Aligned_cols=56  Identities=20%  Similarity=0.234  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      .++..+... +....-+|+|+|||+|.++..+...    ..      .+.+.||+|+...+..++++
T Consensus        24 ~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~----~~------~~v~~vD~s~~~l~~a~~n~   79 (223)
T PRK14967         24 LLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAA----GA------GSVTAVDISRRAVRSARLNA   79 (223)
T ss_pred             HHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHc----CC------CeEEEEECCHHHHHHHHHHH
Confidence            344444332 2233458999999999998765532    11      26899999998887654443

>PRK04457 spermidine synthase; Provisional

Probab=95.37  E-value=0.057  Score=46.73  Aligned_cols=46  Identities=28%  Similarity=0.410  Sum_probs=36.6

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      +.+-+|+|||+|+|+++.-++...    |     ..+.+.||++|.+.+.-++.+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~----p-----~~~v~~VEidp~vi~~A~~~f  110 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYL----P-----DTRQTAVEINPQVIAVARNHF  110 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhC----C-----CCeEEEEECCHHHHHHHHHHc
Confidence            455689999999999998887653    4     247899999999999765543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=95.36  E-value=0.038  Score=45.37  Aligned_cols=39  Identities=13%  Similarity=0.185  Sum_probs=30.1

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .+.+|+|+|||+|.++.-+.+.    .       .+++.||+|+.+.+.-
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~----g-------~~V~gvD~S~~~i~~a   68 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAAN----G-------FDVTAWDKNPMSIANL   68 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHC----C-------CEEEEEeCCHHHHHHH
Confidence            3468999999999998766531    2       2689999999877653

>TIGR00536 hemK_fam HemK family putative methylases

Probab=95.35  E-value=0.051  Score=47.12  Aligned_cols=42  Identities=33%  Similarity=0.423  Sum_probs=33.6

Q ss_pred             ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+|+|+|||+|.++..+....    |     ..+++.||+|+...+..+++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~----~-----~~~v~avDis~~al~~a~~n  157 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEF----P-----NAEVIAVDISPDALAVAEEN  157 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHC----C-----CCEEEEEECCHHHHHHHHHH
Confidence            589999999999999887653    2     24689999999888765554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=95.15  E-value=0.014  Score=49.88  Aligned_cols=53  Identities=13%  Similarity=0.243  Sum_probs=33.1

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +.+++..+...+.+|+|+|||||.++..+.+.+.   |     +.+.+.||+|+.+-+.-+
T Consensus        37 ~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~---~-----~~~v~~vD~s~~ML~~a~   89 (233)
T PF01209_consen   37 RKLIKLLGLRPGDRVLDVACGTGDVTRELARRVG---P-----NGKVVGVDISPGMLEVAR   89 (233)
T ss_dssp             SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS-----------EEEEEES-HHHHHHHH
T ss_pred             HHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCC---C-----ccEEEEecCCHHHHHHHH
Confidence            3444444455566999999999999888765432   2     346899999999988743

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK00811 spermidine synthase; Provisional

Probab=95.02  E-value=0.079  Score=46.30  Aligned_cols=62  Identities=19%  Similarity=0.249  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      .-.|-++++.-.+-..  +.+-+|++||+|+|.+++.+|.+     +    ...+.+.||+++.+.+.-++.+
T Consensus        59 e~~Y~e~l~h~~~~~~--~~p~~VL~iG~G~G~~~~~~l~~-----~----~~~~V~~VEid~~vv~~a~~~~  120 (283)
T PRK00811         59 EFIYHEMMTHVPLFAH--PNPKRVLIIGGGDGGTLREVLKH-----P----SVEKITLVEIDERVVEVCRKYL  120 (283)
T ss_pred             hhhHHHHhhhHHHhhC--CCCCEEEEEecCchHHHHHHHcC-----C----CCCEEEEEeCCHHHHHHHHHHh
Confidence            3456666664443333  44568999999999999999853     2    1236899999999998766543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=95.00  E-value=0.042  Score=46.44  Aligned_cols=54  Identities=24%  Similarity=0.249  Sum_probs=35.7

Q ss_pred             HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+++.++.....+|+|||+|+|.++.-+-.-....        -+.+-||+.+.|.+.-+++
T Consensus        63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~--------g~Vv~vE~~~~l~~~A~~~  116 (209)
T PF01135_consen   63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPV--------GRVVSVERDPELAERARRN  116 (209)
T ss_dssp             HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTT--------EEEEEEESBHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCcc--------ceEEEECccHHHHHHHHHH
Confidence            34444544555699999999999998666544221        1467899999999875444

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00417 speE spermidine synthase

Probab=95.00  E-value=0.067  Score=46.14  Aligned_cols=61  Identities=21%  Similarity=0.205  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...|-++++.--+-.  .+.+.+|+|+|+|+|.+++.++.+.    +     ..+++.||+++.+.+.-++.
T Consensus        55 e~~y~e~l~~~~l~~--~~~p~~VL~iG~G~G~~~~~ll~~~----~-----~~~v~~veid~~vi~~a~~~  115 (270)
T TIGR00417        55 EFIYHEMIAHVPLFT--HPNPKHVLVIGGGDGGVLREVLKHK----S-----VEKATLVDIDEKVIELSKKF  115 (270)
T ss_pred             HHHHHHHhhhhHhhc--CCCCCEEEEEcCCchHHHHHHHhCC----C-----cceEEEEeCCHHHHHHHHHH
Confidence            345666665432222  3344599999999999998887642    1     23699999999998765443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.94  E-value=0.081  Score=41.49  Aligned_cols=56  Identities=14%  Similarity=0.185  Sum_probs=37.7

Q ss_pred             HHHHHh-hhcCCccccccccchHHHHH-HHHHHHHHHh----CCCCCceEEEecCCchhHHH
Q 029895           90 HVDKIY-KQSEISWFTPVELFKPWYAH-GIAEAIMRTA----NLSVPLKIYEIGGGSGTCAK  145 (186)
Q Consensus        90 ~~~~~y-~~~~~dF~Ts~eifsp~Fg~-~lA~~i~~~~----~~~~~l~IvEiGaG~GtLA~  145 (186)
                      .+.+.| +..-..|-.+++=.+-+|=. +||.|++..|    ....+...|++|||+|-|..
T Consensus        13 ~LK~kYa~~lv~~W~E~TdP~K~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~   74 (112)
T PF07757_consen   13 RLKEKYARWLVDNWPESTDPQKHVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVY   74 (112)
T ss_pred             HHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHH
Confidence            344445 34444576555543556653 6999999999    23356789999999998754

; GO: 0008168 methyltransferase activity

>PRK14968 putative methyltransferase; Provisional

Probab=94.91  E-value=0.082  Score=41.53  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=30.6

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ...+|+|+|||+|.++..+++.    .       .+++.+|+|+...+.-
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~----~-------~~v~~~D~s~~~~~~a   61 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKN----G-------KKVVGVDINPYAVECA   61 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhh----c-------ceEEEEECCHHHHHHH
Confidence            3458999999999998888764    1       2588999999877653

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=94.82  E-value=0.075  Score=50.34  Aligned_cols=43  Identities=30%  Similarity=0.373  Sum_probs=33.7

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.+|+|+|||+|.++..++..+    |     ..+.+.||+|+...+..+++
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~----p-----~~~v~avDis~~al~~A~~N  181 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL----P-----NANVIATDISLDAIEVAKSN  181 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC----C-----CCeEEEEECCHHHHHHHHHH
Confidence            4589999999999999877643    3     24789999999888765544

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=94.81  E-value=0.076  Score=48.89  Aligned_cols=72  Identities=15%  Similarity=0.174  Sum_probs=46.8

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+.|-+-+||.-==..=++.+++.+.....-+|+|+|||+|.++.-+...    .| .    .+.+.||+|+...+..++
T Consensus       200 ~~~~~~gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~----~P-~----~~V~~vD~S~~Av~~A~~  270 (378)
T PRK15001        200 TIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDK----NP-Q----AKVVFVDESPMAVASSRL  270 (378)
T ss_pred             EEEecCCccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHh----CC-C----CEEEEEECCHHHHHHHHH
Confidence            47777777775100111445555553333348999999999998765543    45 2    479999999988776554


Q ss_pred             h
Q 029895          181 N  181 (186)
Q Consensus       181 ~  181 (186)
                      +
T Consensus       271 N  271 (378)
T PRK15001        271 N  271 (378)
T ss_pred             H
Confidence            3

>TIGR00438 rrmJ cell division protein FtsJ

Probab=94.80  E-value=0.068  Score=43.14  Aligned_cols=40  Identities=13%  Similarity=0.251  Sum_probs=29.4

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT  174 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L  174 (186)
                      ....-+|+|+|||+|.++..+.+....        ..+.+.||+||.+
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~--------~~~v~~vDis~~~   69 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGG--------KGRVIAVDLQPMK   69 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCC--------CceEEEEeccccc
Confidence            344568999999999998888765421        2357888998853

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=94.71  E-value=0.11  Score=46.71  Aligned_cols=40  Identities=20%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      ...+|+|+|||+|.++..+..    ..       .+++.||+|+.+.+.-+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~----~g-------~~V~GID~s~~~i~~Ar  170 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLAR----MG-------ATVTGVDAVDKNVKIAR  170 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHH----cC-------CEEEEEeCCHHHHHHHH
Confidence            345899999999998875542    12       26899999999887643

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=94.62  E-value=0.2  Score=48.85  Aligned_cols=68  Identities=16%  Similarity=0.290  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH-H--HHhccc
Q 029895          112 WYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD-T--ERNCWT  184 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~-Q--~~~~~~  184 (186)
                      .|+++|-..++...   ......+|+=+|||+|-|...+|+..++..     .+++.++||.+|.---. |  +..||.
T Consensus       347 ~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~-----RkVklyavEKNPNAivtL~~~n~~~W~  420 (649)
T KOG0822|consen  347 QYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETD-----RKVKLYAVEKNPNAIVTLQNRNFECWD  420 (649)
T ss_pred             HHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhc-----CceEEEEEecCcchhhhhhhhchhhhc
Confidence            57777777777765   122367899999999999999999987653     57899999999975543 4  234564

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=94.62  E-value=0.14  Score=48.11  Aligned_cols=60  Identities=15%  Similarity=0.146  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHhCCC----CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895          112 WYAHGIAEAIMRTANLS----VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~~~~----~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      .|.++|...+.......    ....|+++|||+|-|..-.+++.+...     .+.+.+.||.||.-..
T Consensus       165 ~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~-----~a~~VyAVEkn~~A~~  228 (448)
T PF05185_consen  165 QYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG-----GAVKVYAVEKNPNAVV  228 (448)
T ss_dssp             HHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC-----CESEEEEEESSTHHHH
T ss_pred             HHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC-----CCeEEEEEcCCHhHHH
Confidence            58888888887777432    357899999999999999998876543     3467899999996443

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=94.57  E-value=0.087  Score=47.66  Aligned_cols=60  Identities=18%  Similarity=0.269  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhC---CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhcc
Q 029895          115 HGIAEAIMRTAN---LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNCW  183 (186)
Q Consensus       115 ~~lA~~i~~~~~---~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~~  183 (186)
                      |-+.+++++..+   ...+..|+|+|+|+|.++..+|.-|.         +++.+.||.|+.-...-.++|.
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~---------~~~v~AiD~S~~Ai~La~eN~q  193 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP---------QCTVTAIDVSKAAIKLAKENAQ  193 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC---------CceEEEEeccHHHHHHHHHHHH
Confidence            556666666652   34455899999999999999998763         4679999999988887777663

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=94.51  E-value=0.087  Score=47.40  Aligned_cols=50  Identities=24%  Similarity=0.252  Sum_probs=35.0

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      +++..+....-+|+|+|||+|.++.-+.+....        .-..+.||+|+.+.+.-
T Consensus        72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~--------~g~VvgVDis~~~l~~A  121 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGE--------KGLVVSVEYSRKICEIA  121 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCC--------CCEEEEEECCHHHHHHH
Confidence            444444444568999999999999887664311        12478899999987653

>PRK04148 hypothetical protein; Provisional

Probab=94.34  E-value=0.18  Score=40.34  Aligned_cols=54  Identities=24%  Similarity=0.223  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhCCCCCceEEEecCCchh-HHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          116 GIAEAIMRTANLSVPLKIYEIGGGSGT-CAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       116 ~lA~~i~~~~~~~~~l~IvEiGaG~Gt-LA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .||.|+.+........+|+|+|+|+|. +|. .|.   +..       .+.+.||+||...+.-++
T Consensus         3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~-~L~---~~G-------~~ViaIDi~~~aV~~a~~   57 (134)
T PRK04148          3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAK-KLK---ESG-------FDVIVIDINEKAVEKAKK   57 (134)
T ss_pred             HHHHHHHHhcccccCCEEEEEEecCCHHHHH-HHH---HCC-------CEEEEEECCHHHHHHHHH
Confidence            477888777744445789999999996 554 333   322       268999999997765433

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=94.24  E-value=0.13  Score=46.39  Aligned_cols=71  Identities=11%  Similarity=0.108  Sum_probs=45.0

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+.+.|.+|++-==..-.+.+++.+.....-+|+|+|||+|.++..++..    .|     ..+.+.||+|+...+..++
T Consensus       168 ~i~~~pgvFs~~~lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~----~p-----~~~v~~vDis~~Al~~A~~  238 (342)
T PRK09489        168 TVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARH----SP-----KIRLTLSDVSAAALESSRA  238 (342)
T ss_pred             EEEeCCCCCCCCCCCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHh----CC-----CCEEEEEECCHHHHHHHHH
Confidence            46677777665110111244444443333448999999999998876653    34     2468999999987776544

>TIGR00452 methyltransferase, putative

Probab=94.19  E-value=0.16  Score=45.52  Aligned_cols=63  Identities=11%  Similarity=0.067  Sum_probs=40.0

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ++.|++|+ .+   ...-..++...+....-+|+|+|||+|.++..++..    .+      -.++-||+|+.+..+
T Consensus        97 ~~~~~~e~-~s---~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~----g~------~~v~GiDpS~~ml~q  159 (314)
T TIGR00452        97 GIKIDSEW-RS---DIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGH----GA------KSLVGIDPTVLFLCQ  159 (314)
T ss_pred             cccCCHHH-HH---HHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHc----CC------CEEEEEcCCHHHHHH
Confidence            57777777 32   222222333334344569999999999998766542    33      157899999976543

Known examples to date are restricted to the proteobacteria.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=94.09  E-value=0.15  Score=47.02  Aligned_cols=59  Identities=10%  Similarity=0.029  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .-.+.+.+.+++........+|+|+|||+|+++..+...    .       .+.+.||+|+...+.-+++
T Consensus       280 ~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~----~-------~~V~gvD~s~~al~~A~~n  338 (443)
T PRK13168        280 QVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ----A-------AEVVGVEGVEAMVERAREN  338 (443)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh----C-------CEEEEEeCCHHHHHHHHHH
Confidence            335677777777665444568999999999998876543    1       1578999999988765443

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=94.00  E-value=0.43  Score=41.49  Aligned_cols=47  Identities=11%  Similarity=0.118  Sum_probs=37.4

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +...+.+|+|+|||||.+|..+.+...         +.+.+.||+|+.+-+.-++-
T Consensus        48 ~~~~g~~vLDva~GTGd~a~~~~k~~g---------~g~v~~~D~s~~ML~~a~~k   94 (238)
T COG2226          48 GIKPGDKVLDVACGTGDMALLLAKSVG---------TGEVVGLDISESMLEVAREK   94 (238)
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhcC---------CceEEEEECCHHHHHHHHHH
Confidence            444667999999999999998877643         35789999999998875443

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=93.95  E-value=0.23  Score=44.02  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=42.8

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      -|++|..+ .|-.    |+.++...+....-.|+|+|||+|+++....    ...       .+.+-+|+|+.+.+..++
T Consensus       159 ~~~~~~~l-~~~l----a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa----~~~-------~~v~g~Di~~~~~~~a~~  222 (329)
T TIGR01177       159 PFFKPGSM-DPKL----ARAMVNLARVTEGDRVLDPFCGTGGFLIEAG----LMG-------AKVIGCDIDWKMVAGARI  222 (329)
T ss_pred             CccCCCCC-CHHH----HHHHHHHhCCCCcCEEEECCCCCCHHHHHHH----HhC-------CeEEEEcCCHHHHHHHHH
Confidence            47888877 7755    5555554444445589999999999864321    112       257889999988775433

This family is found exclusively in the Archaea.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=93.89  E-value=0.14  Score=45.87  Aligned_cols=49  Identities=12%  Similarity=0.154  Sum_probs=40.2

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ++....++++++||||-+|..||++...+.-   -...+.++.||||.+-..
T Consensus        97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~---~~~~~V~v~Dinp~mL~v  145 (296)
T KOG1540|consen   97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFG---DRESKVTVLDINPHMLAV  145 (296)
T ss_pred             CCCCCCeEEEecCCcchhHHHHHHhhccccC---CCCceEEEEeCCHHHHHH
Confidence            4566689999999999999999999977532   234689999999998764

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=93.87  E-value=0.16  Score=44.69  Aligned_cols=58  Identities=22%  Similarity=0.209  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+.|..++......... +|+|+|+|||.+|..+....    | +    .+.+.+|+||.--+.-+++
T Consensus        96 Te~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~----~-~----~~V~a~Dis~~Al~~A~~N  153 (280)
T COG2890          96 TELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEG----P-D----AEVIAVDISPDALALAREN  153 (280)
T ss_pred             hHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhC----c-C----CeEEEEECCHHHHHHHHHH
Confidence            35666665533322222 89999999999999887764    3 2    4789999999766654444

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=93.74  E-value=0.21  Score=43.98  Aligned_cols=43  Identities=14%  Similarity=0.179  Sum_probs=32.8

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      .+.+|+|+|||+|+++..+...    .       .+.+.||+|+...+.-++++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~----~-------~~V~gvD~s~~av~~A~~n~  215 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP----G-------MQLTGIEISAEAIACAKQSA  215 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc----C-------CEEEEEeCCHHHHHHHHHHH
Confidence            3468999999999998776541    1       25899999999888755443

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=93.74  E-value=0.25  Score=40.02  Aligned_cols=50  Identities=12%  Similarity=0.224  Sum_probs=29.9

Q ss_pred             HHHHHHHHHH------hCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895          115 HGIAEAIMRT------ANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL  173 (186)
Q Consensus       115 ~~lA~~i~~~------~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~  173 (186)
                      ..+|+|+.+.      .....+.+|+|+|||+|..+.-+....   .      ..+.++=|.++.
T Consensus        25 ~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~---~------~~~Vv~TD~~~~   80 (173)
T PF10294_consen   25 LVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF---G------AARVVLTDYNEV   80 (173)
T ss_dssp             HHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT----T-------SEEEEEE-S-H
T ss_pred             HHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc---C------CceEEEeccchh
Confidence            4567777773      234556799999999997665554441   1      236788888883

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK01581 speE spermidine synthase; Validated

Probab=93.72  E-value=0.23  Score=46.05  Aligned_cols=59  Identities=19%  Similarity=0.345  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      -+|=|+|+.-.+...  +.+.+|+++|+|+|..++.+|.+    .+     ..+.+.||++|.+.+.-++
T Consensus       134 ~iYHE~Lvhp~m~~h--~~PkrVLIIGgGdG~tlrelLk~----~~-----v~~It~VEIDpeVIelAr~  192 (374)
T PRK01581        134 QIYHEALVHPIMSKV--IDPKRVLILGGGDGLALREVLKY----ET-----VLHVDLVDLDGSMINMARN  192 (374)
T ss_pred             HHHHHHHHHHHHHhC--CCCCEEEEECCCHHHHHHHHHhc----CC-----CCeEEEEeCCHHHHHHHHh
Confidence            368888887665544  44569999999999988888764    11     2368999999998887654

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=93.69  E-value=0.21  Score=43.37  Aligned_cols=45  Identities=18%  Similarity=0.392  Sum_probs=31.5

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT  174 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L  174 (186)
                      +.+.......-+|+|+|||+|+++..++..    .| .    ++.+++|..+.+
T Consensus       141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~----~p-~----~~~~~~D~~~~~  185 (306)
T TIGR02716       141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKH----FP-E----LDSTILNLPGAI  185 (306)
T ss_pred             HHHHcCCCCCCEEEEeCCchhHHHHHHHHH----CC-C----CEEEEEecHHHH
Confidence            333334445569999999999999888776    35 3    468888974333

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=93.69  E-value=0.1  Score=45.80  Aligned_cols=46  Identities=20%  Similarity=0.299  Sum_probs=34.2

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..+..-+|+|+|||+|.++.-+..-    .+     ..+.+.||+++.+.++-++
T Consensus        41 ~~~~~~~IlDlGaG~G~l~L~la~r----~~-----~a~I~~VEiq~~~a~~A~~   86 (248)
T COG4123          41 PVPKKGRILDLGAGNGALGLLLAQR----TE-----KAKIVGVEIQEEAAEMAQR   86 (248)
T ss_pred             ccccCCeEEEecCCcCHHHHHHhcc----CC-----CCcEEEEEeCHHHHHHHHH
Confidence            3444679999999999988754332    12     2579999999999998544

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.60  E-value=0.27  Score=42.25  Aligned_cols=61  Identities=21%  Similarity=0.285  Sum_probs=43.3

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .++..|.+        +|+ |++.++....-+|+|||+|+|..|.= |..+-.          +.+.||+.+.|.+.-++
T Consensus        53 qtis~P~~--------vA~-m~~~L~~~~g~~VLEIGtGsGY~aAv-la~l~~----------~V~siEr~~~L~~~A~~  112 (209)
T COG2518          53 QTISAPHM--------VAR-MLQLLELKPGDRVLEIGTGSGYQAAV-LARLVG----------RVVSIERIEELAEQARR  112 (209)
T ss_pred             ceecCcHH--------HHH-HHHHhCCCCCCeEEEECCCchHHHHH-HHHHhC----------eEEEEEEcHHHHHHHHH
Confidence            47877766        344 44555556667999999999998864 443321          47889999999987654


Q ss_pred             h
Q 029895          181 N  181 (186)
Q Consensus       181 ~  181 (186)
                      +
T Consensus       113 ~  113 (209)
T COG2518         113 N  113 (209)
T ss_pred             H
Confidence            3

>PRK04266 fibrillarin; Provisional

Probab=93.58  E-value=0.18  Score=43.01  Aligned_cols=43  Identities=23%  Similarity=0.227  Sum_probs=31.4

Q ss_pred             hCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895          125 ANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       125 ~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      ......-+|+|+|||+|.++..+.+...         .-+.+.||+|+.+.+
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~---------~g~V~avD~~~~ml~  110 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVE---------EGVVYAVEFAPRPMR  110 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcC---------CCeEEEEECCHHHHH
Confidence            4434456999999999999887766542         125788999996555

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=93.55  E-value=0.15  Score=44.21  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=29.3

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      +-+|+|+|||+|.++.-+..    ..       .+++.||+|+...+..
T Consensus       121 ~~~vLDlGcG~G~~~~~la~----~g-------~~V~avD~s~~ai~~~  158 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLAL----LG-------FDVTAVDINQQSLENL  158 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHH----CC-------CEEEEEECCHHHHHHH
Confidence            34899999999999876644    12       3689999999877653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=93.53  E-value=0.2  Score=46.15  Aligned_cols=50  Identities=10%  Similarity=0.150  Sum_probs=34.5

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +++........+|+|+|||+|.++..+....          ..+++-||+|+...+..++
T Consensus       258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~----------~~~v~gvDiS~~~l~~A~~  307 (475)
T PLN02336        258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF----------DVHVVGIDLSVNMISFALE  307 (475)
T ss_pred             HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc----------CCEEEEEECCHHHHHHHHH
Confidence            3333333445689999999999887654432          2368999999988776443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=93.48  E-value=0.23  Score=45.41  Aligned_cols=51  Identities=20%  Similarity=0.364  Sum_probs=35.9

Q ss_pred             HHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          122 MRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       122 ~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ++..+....-+|+|||||+|.++.-+....          .++.+.||+|+...+.-++.+
T Consensus       160 ~~~l~l~~g~rVLDIGcG~G~~a~~la~~~----------g~~V~giDlS~~~l~~A~~~~  210 (383)
T PRK11705        160 CRKLQLKPGMRVLDIGCGWGGLARYAAEHY----------GVSVVGVTISAEQQKLAQERC  210 (383)
T ss_pred             HHHhCCCCCCEEEEeCCCccHHHHHHHHHC----------CCEEEEEeCCHHHHHHHHHHh
Confidence            333444445699999999999987664421          136899999999888754443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=93.45  E-value=0.2  Score=46.05  Aligned_cols=48  Identities=15%  Similarity=0.171  Sum_probs=34.5

Q ss_pred             HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .+++.+......+|+|+|||+|.++..+.+.    ..       +++.||+|+.+.+..
T Consensus        28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~----~~-------~v~giD~s~~~l~~a   75 (475)
T PLN02336         28 EILSLLPPYEGKSVLELGAGIGRFTGELAKK----AG-------QVIALDFIESVIKKN   75 (475)
T ss_pred             HHHhhcCccCCCEEEEeCCCcCHHHHHHHhh----CC-------EEEEEeCCHHHHHHH
Confidence            3334443334458999999999999987764    22       578999999988753

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=93.26  E-value=0.22  Score=44.03  Aligned_cols=55  Identities=18%  Similarity=0.199  Sum_probs=42.2

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      -+|+...+....-+|+|.|.|+|.|+.-+++++....        +.+.+|+-+...+.-+++
T Consensus        84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G--------~v~tyE~r~d~~k~A~~N  138 (256)
T COG2519          84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEG--------HVTTYEIREDFAKTAREN  138 (256)
T ss_pred             HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCc--------eEEEEEecHHHHHHHHHH
Confidence            3555555666677999999999999999999875443        467788888888876554

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=93.26  E-value=0.15  Score=44.45  Aligned_cols=44  Identities=18%  Similarity=0.232  Sum_probs=34.9

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+-+|+|+|+|.||-+-...+.+. ..       .+|++||.|+.+.+.-+.
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~-~~-------~~~~~vd~s~~~~~l~~~   76 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWP-SL-------KEYTCVDRSPEMLELAKR   76 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhc-Cc-------eeeeeecCCHHHHHHHHH
Confidence            456999999999998887777775 21       379999999999886444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=93.19  E-value=0.27  Score=41.79  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=30.7

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+|||+|.++..+.    +..+      .+++.||+||...+.-+++
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~----~~g~------~~v~giDis~~~l~~A~~n  161 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAA----KLGA------KKVLAVDIDPQAVEAAREN  161 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHH----HcCC------CeEEEEECCHHHHHHHHHH
Confidence            45689999999998876432    2222      2488999999988764443

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=93.11  E-value=0.17  Score=46.98  Aligned_cols=41  Identities=24%  Similarity=0.271  Sum_probs=30.4

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      .....++|||||+|.++..+...    .| +    ..++-||+++.+.++
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~----~P-~----~~~iGIEI~~~~i~~  161 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKN----NP-N----KLFIGIEIHTPSIEQ  161 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHh----CC-C----CCEEEEECCHHHHHH
Confidence            34458999999999887655443    45 3    479999999887665

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=93.09  E-value=0.23  Score=46.69  Aligned_cols=56  Identities=20%  Similarity=0.288  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.+...+.....  ...+|+|+|||+|.++..+...    .|     ..+.+.||+|+...+..+++
T Consensus       239 E~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~----~p-----~a~VtAVDiS~~ALe~AreN  294 (423)
T PRK14966        239 EHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALE----RP-----DAFVRASDISPPALETARKN  294 (423)
T ss_pred             HHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHh----CC-----CCEEEEEECCHHHHHHHHHH
Confidence            556666655443  2348999999999999877643    23     24689999999998876554

>PLN02366 spermidine synthase

Probab=93.08  E-value=0.33  Score=43.44  Aligned_cols=60  Identities=17%  Similarity=0.208  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      -.|-++|+.--+..  .+.+-+|++||+|.|.+++.++++     | .   -.+.++||+++.+.+.-++.
T Consensus        75 ~~Y~e~l~h~~l~~--~~~pkrVLiIGgG~G~~~rellk~-----~-~---v~~V~~VEiD~~Vi~~ar~~  134 (308)
T PLN02366         75 CAYQEMITHLPLCS--IPNPKKVLVVGGGDGGVLREIARH-----S-S---VEQIDICEIDKMVIDVSKKF  134 (308)
T ss_pred             HHHHHHHHHHHHhh--CCCCCeEEEEcCCccHHHHHHHhC-----C-C---CCeEEEEECCHHHHHHHHHh
Confidence            35667666644433  345679999999999999888764     3 1   23689999999887765543

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=93.05  E-value=0.31  Score=41.26  Aligned_cols=50  Identities=20%  Similarity=0.233  Sum_probs=38.4

Q ss_pred             hCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhcc
Q 029895          125 ANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNCW  183 (186)
Q Consensus       125 ~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~~  183 (186)
                      +.+.+.-+++|||||+|+++-.+. .   ..|     +.+.+-||.++.-.+.-+++|.
T Consensus        30 L~~~~g~~l~DIGaGtGsi~iE~a-~---~~p-----~~~v~AIe~~~~a~~~~~~N~~   79 (187)
T COG2242          30 LRPRPGDRLWDIGAGTGSITIEWA-L---AGP-----SGRVIAIERDEEALELIERNAA   79 (187)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHH-H---hCC-----CceEEEEecCHHHHHHHHHHHH
Confidence            344444599999999999998877 2   234     4678999999998888777763

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=92.99  E-value=0.31  Score=42.77  Aligned_cols=41  Identities=20%  Similarity=0.332  Sum_probs=32.0

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS  172 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp  172 (186)
                      ..+..+||+|||+|.|+.-|-..+....+    ....|++||...
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~----~~~~~~lIDR~~   57 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKP----SNSRFVLIDRAS   57 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhccc----CCccEEEEecCc
Confidence            45568999999999999999998866422    335799999844

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=92.72  E-value=0.15  Score=42.98  Aligned_cols=83  Identities=14%  Similarity=0.233  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccc
Q 029895           84 RKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNM  163 (186)
Q Consensus        84 ~~~y~~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l  163 (186)
                      +.+..+++.+.=.+.. .+ -...+ +|.=|+.|. .+++..   .+-+|+|||.+.|.-+.-+.+.+.+        ..
T Consensus         7 ~~~~l~~l~~~t~~~~-~~-~~~~i-~~~~g~lL~-~l~~~~---~~k~vLEIGt~~GySal~la~~l~~--------~g   71 (205)
T PF01596_consen    7 EPELLKELREFTRENQ-GL-PQMSI-SPETGQLLQ-MLVRLT---RPKRVLEIGTFTGYSALWLAEALPE--------DG   71 (205)
T ss_dssp             STHHHHHHHHHHHCTT-TT-GGGSH-HHHHHHHHH-HHHHHH---T-SEEEEESTTTSHHHHHHHHTSTT--------TS
T ss_pred             CCHHHHHHHHHHHhCc-CC-CCCcc-CHHHHHHHH-HHHHhc---CCceEEEeccccccHHHHHHHhhcc--------cc
Confidence            3455555555444432 11 11224 566666554 333333   3558999999999999988887632        34


Q ss_pred             eEEEEecCcchHHHHHHh
Q 029895          164 TYISVEIQSLTGRDTERN  181 (186)
Q Consensus       164 ~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +++.||++|...+..+++
T Consensus        72 ~i~tiE~~~~~~~~A~~~   89 (205)
T PF01596_consen   72 KITTIEIDPERAEIAREN   89 (205)
T ss_dssp             EEEEEESSHHHHHHHHHH
T ss_pred             eEEEecCcHHHHHHHHHH
Confidence            799999999998876554

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK06922 hypothetical protein; Provisional

Probab=92.69  E-value=0.56  Score=46.52  Aligned_cols=41  Identities=12%  Similarity=0.156  Sum_probs=31.4

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .+.+|+|+|||+|.++..+...    .|     ..+++.||+|+.+.+..
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~----~P-----~~kVtGIDIS~~MLe~A  458 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEE----TE-----DKRIYGIDISENVIDTL  458 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHh----CC-----CCEEEEEECCHHHHHHH
Confidence            3569999999999987655443    33     35899999999977654

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=92.69  E-value=0.33  Score=43.51  Aligned_cols=38  Identities=13%  Similarity=0.166  Sum_probs=30.2

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ...+|+|+|||+|.++..+.+.    .       .+.+.||+|+.+.+.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~----g-------~~V~gvD~S~~ml~~  181 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE----G-------AIVSASDISAAMVAE  181 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC----C-------CEEEEEECCHHHHHH
Confidence            3569999999999998777652    2       258999999988665

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=92.57  E-value=0.14  Score=46.53  Aligned_cols=41  Identities=17%  Similarity=0.328  Sum_probs=31.7

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ...+|+|+|||+|.++..+++..    + .    .+++.||+|+.+.+.-
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~----~-~----~~VtgVD~S~~mL~~A  153 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHV----D-A----KNVTILDQSPHQLAKA  153 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHC----C-C----CEEEEEECCHHHHHHH
Confidence            35699999999999988776542    2 2    3699999999986653

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=92.52  E-value=0.22  Score=40.33  Aligned_cols=38  Identities=16%  Similarity=0.158  Sum_probs=27.2

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ..+|+|+|||+|.++..+.+.    ..      .+.+-||+|+...+.
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~----~~------~~~~giD~s~~~i~~   51 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDE----KQ------VRGYGIEIDQDGVLA   51 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhc----cC------CcEEEEeCCHHHHHH
Confidence            348999999999987655432    11      245789999987665

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=92.43  E-value=0.34  Score=44.32  Aligned_cols=59  Identities=12%  Similarity=0.160  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          113 YAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       113 Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      -.+.+...+.+.......-+|+|+|||+|+++.-+.+.    ..       +.+.||+|+...+.-++++
T Consensus       276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~----~~-------~V~~vE~~~~av~~a~~n~  334 (431)
T TIGR00479       276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ----AK-------SVVGIEVVPESVEKAQQNA  334 (431)
T ss_pred             HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh----CC-------EEEEEEcCHHHHHHHHHHH
Confidence            34445555555555444468999999999999876543    21       4789999999988765543

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK03612 spermidine synthase; Provisional

Probab=92.41  E-value=0.36  Score=45.87  Aligned_cols=58  Identities=19%  Similarity=0.385  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .|.+.++.-...  ..+++.+|+++|+|+|.+++.++++     | .   ..+.+.||++|.+.+..++
T Consensus       282 ~y~e~l~~~~l~--~~~~~~rVL~IG~G~G~~~~~ll~~-----~-~---v~~v~~VEid~~vi~~ar~  339 (521)
T PRK03612        282 RYHEALVHPAMA--ASARPRRVLVLGGGDGLALREVLKY-----P-D---VEQVTLVDLDPAMTELART  339 (521)
T ss_pred             HHHHHHHHHHHh--hCCCCCeEEEEcCCccHHHHHHHhC-----C-C---cCeEEEEECCHHHHHHHHh
Confidence            456665532222  2345678999999999999888763     2 1   1368999999999998766

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=92.12  E-value=0.27  Score=41.04  Aligned_cols=36  Identities=14%  Similarity=0.229  Sum_probs=27.3

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS  172 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp  172 (186)
                      ..-+|+|+|||+|.++.-+++...   +     ..+++.||+|+
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~---~-----~~~V~aVDi~~   86 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIG---D-----KGRVIACDILP   86 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcC---C-----CceEEEEeccc
Confidence            345899999999999888876541   1     23688899887

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=92.06  E-value=0.39  Score=41.84  Aligned_cols=55  Identities=15%  Similarity=0.228  Sum_probs=37.5

Q ss_pred             HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      +|+...+....-+|+|.|.|+|.|+..+++.+....        +.+-.|......+.-++++
T Consensus        31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G--------~v~t~E~~~~~~~~A~~n~   85 (247)
T PF08704_consen   31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTG--------HVYTYEFREDRAEKARKNF   85 (247)
T ss_dssp             HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTS--------EEEEEESSHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCe--------EEEccccCHHHHHHHHHHH
Confidence            444455555556999999999999999999985433        4677899988888755543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=92.02  E-value=0.26  Score=41.94  Aligned_cols=45  Identities=11%  Similarity=-0.084  Sum_probs=34.5

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+-+|+|+|+|+|.-+..+...+..        ..+.+.||+++...+.-+++
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~--------~g~v~tiD~d~~~~~~A~~n  112 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPE--------DGRITAIDIDKEAYEVGLEF  112 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHH
Confidence            3558999999999988887776522        23689999999888765544

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=91.87  E-value=0.72  Score=41.67  Aligned_cols=56  Identities=14%  Similarity=0.086  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+.+..++.+..+... -+|+|+|||+|+++.-+.+.    ..       +.+.||+|+...+..+++
T Consensus       183 ~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~----~~-------~v~~vE~~~~av~~a~~n  238 (353)
T TIGR02143       183 NIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN----FR-------RVLATEIAKPSVNAAQYN  238 (353)
T ss_pred             HHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh----CC-------EEEEEECCHHHHHHHHHH
Confidence            3555666666554222 36999999999999844333    21       589999999998876554

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=91.81  E-value=0.7  Score=38.54  Aligned_cols=41  Identities=22%  Similarity=0.383  Sum_probs=27.9

Q ss_pred             HHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecC
Q 029895          122 MRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ  171 (186)
Q Consensus       122 ~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS  171 (186)
                      ......+..-+|||+|+|+|.++..|+..    +|     +++.++.|.-
T Consensus        93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~----~P-----~l~~~v~Dlp  133 (241)
T PF00891_consen   93 LEAFDFSGFKTVVDVGGGSGHFAIALARA----YP-----NLRATVFDLP  133 (241)
T ss_dssp             HHHSTTTTSSEEEEET-TTSHHHHHHHHH----ST-----TSEEEEEE-H
T ss_pred             hccccccCccEEEeccCcchHHHHHHHHH----CC-----CCcceeeccH
Confidence            33334444458999999999999988654    46     3578888873

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=91.76  E-value=0.28  Score=42.81  Aligned_cols=42  Identities=17%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .-+|+|+|||+|.++..++.    ...      -+.+.||+||...+.-+++
T Consensus       160 g~~VLDvGcGsG~lai~aa~----~g~------~~V~avDid~~al~~a~~n  201 (288)
T TIGR00406       160 DKNVIDVGCGSGILSIAALK----LGA------AKVVGIDIDPLAVESARKN  201 (288)
T ss_pred             CCEEEEeCCChhHHHHHHHH----cCC------CeEEEEECCHHHHHHHHHH
Confidence            46899999999999865432    121      2689999999887765444

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=91.68  E-value=0.49  Score=40.23  Aligned_cols=39  Identities=18%  Similarity=0.262  Sum_probs=27.8

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .-+|+++|||+|+|..    +|++..      +++-.-||+++......
T Consensus        14 gsrVLDLGCGdG~LL~----~L~~~k------~v~g~GvEid~~~v~~c   52 (193)
T PF07021_consen   14 GSRVLDLGCGDGELLA----YLKDEK------QVDGYGVEIDPDNVAAC   52 (193)
T ss_pred             CCEEEecCCCchHHHH----HHHHhc------CCeEEEEecCHHHHHHH
Confidence            3599999999999864    444421      35678899998765443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=91.65  E-value=0.31  Score=41.39  Aligned_cols=45  Identities=13%  Similarity=0.158  Sum_probs=31.9

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...-+|+|+|||+|.++.-+....   .+     ..+.+.||+|+.+.+.-++
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~---g~-----~~~v~gvD~s~~~l~~A~~  120 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRV---GP-----TGKVIGVDMTPEMLAKARA  120 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHh---CC-----CCEEEEECCCHHHHHHHHH
Confidence            345599999999998776544332   22     2368999999998876443

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=91.58  E-value=0.81  Score=40.16  Aligned_cols=68  Identities=15%  Similarity=0.063  Sum_probs=44.0

Q ss_pred             ccccccccchHHHHHHHHHHHHHHh-------CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTA-------NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL  173 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~-------~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~  173 (186)
                      ++.-+.+-|..+|-+-.+.+=.+.+       ++..+..++|+|||+|++-.        ..|  .-..++.+.||.||.
T Consensus        41 ~~~~p~~~ft~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfk--------fy~--~~p~~svt~lDpn~~  110 (252)
T KOG4300|consen   41 DLLIPNSNFTSIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFK--------FYP--WKPINSVTCLDPNEK  110 (252)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcc--------ccc--CCCCceEEEeCCcHH
Confidence            3444444555666655555533322       56777889999999998621        111  113578999999999


Q ss_pred             hHHHH
Q 029895          174 TGRDT  178 (186)
Q Consensus       174 L~~~Q  178 (186)
                      +.+.-
T Consensus       111 mee~~  115 (252)
T KOG4300|consen  111 MEEIA  115 (252)
T ss_pred             HHHHH
Confidence            98864

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=91.30  E-value=0.6  Score=42.36  Aligned_cols=41  Identities=12%  Similarity=0.121  Sum_probs=31.6

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .-+|+|+|||+|+++.-+...    .       .+.+.||+|+...+..+++
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~----~-------~~v~~vE~~~~av~~a~~N  274 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGP----D-------TQLTGIEIESEAIACAQQS  274 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhc----C-------CeEEEEECCHHHHHHHHHH
Confidence            358999999999999777631    1       2588999999988865554

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=91.13  E-value=0.62  Score=38.70  Aligned_cols=38  Identities=26%  Similarity=0.448  Sum_probs=27.8

Q ss_pred             eEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          132 KIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       132 ~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .++|||||+|.++.....    .+| +    ..|+-||++.....+.
T Consensus        20 l~lEIG~G~G~~l~~~A~----~~P-d----~n~iGiE~~~~~v~~a   57 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAK----RNP-D----INFIGIEIRKKRVAKA   57 (195)
T ss_dssp             EEEEET-TTSHHHHHHHH----HST-T----SEEEEEES-HHHHHHH
T ss_pred             eEEEecCCCCHHHHHHHH----HCC-C----CCEEEEecchHHHHHH
Confidence            899999999998776544    456 4    5799999998776653

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=91.10  E-value=0.5  Score=39.59  Aligned_cols=42  Identities=14%  Similarity=0.140  Sum_probs=31.4

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..+|+|+|||+|.++...|..   ..       .+.+.||+++...+.-+++
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr---~a-------~~V~~vE~~~~a~~~a~~N   95 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSR---YA-------AGATLLEMDRAVAQQLIKN   95 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHc---CC-------CEEEEEECCHHHHHHHHHH
Confidence            348999999999999754432   11       2689999999998865554

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=90.99  E-value=0.62  Score=42.04  Aligned_cols=67  Identities=13%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             ccccccccchH---HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          101 SWFTPVELFKP---WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       101 dF~Ts~eifsp---~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      .|.|.|-+||-   -+|   ++-+++.+.....-+|+|+|||.|.|+..+...    .|     ..+.++||+|..--+.
T Consensus       130 ~~~t~pGVFS~~~lD~G---S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~----~p-----~~~vtmvDvn~~Av~~  197 (300)
T COG2813         130 TFKTLPGVFSRDKLDKG---SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKK----SP-----QAKLTLVDVNARAVES  197 (300)
T ss_pred             EEEeCCCCCcCCCcChH---HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHh----CC-----CCeEEEEecCHHHHHH
Confidence            59999999885   444   455566664333449999999999999877664    34     3578999999876655


Q ss_pred             HH
Q 029895          178 TE  179 (186)
Q Consensus       178 Q~  179 (186)
                      -+
T Consensus       198 ar  199 (300)
T COG2813         198 AR  199 (300)
T ss_pred             HH
Confidence            33

>PLN02823 spermine synthase

Probab=90.86  E-value=0.86  Score=41.32  Aligned_cols=59  Identities=15%  Similarity=0.294  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .|-|+++.-.+...  +.+.+|+.||+|.|.+++.+|.+    .+     ..+.+.||++|.+.+.-++.
T Consensus        88 ~YhE~l~h~~l~~~--~~pk~VLiiGgG~G~~~re~l~~----~~-----~~~v~~VEiD~~vv~lar~~  146 (336)
T PLN02823         88 VYHESLVHPALLHH--PNPKTVFIMGGGEGSTAREVLRH----KT-----VEKVVMCDIDQEVVDFCRKH  146 (336)
T ss_pred             HHHHHHHhHHHhhC--CCCCEEEEECCCchHHHHHHHhC----CC-----CCeEEEEECCHHHHHHHHHh
Confidence            57777765544443  45568999999999999888864    12     13689999999999886654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=90.70  E-value=0.45  Score=42.44  Aligned_cols=39  Identities=10%  Similarity=0.151  Sum_probs=29.4

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      -...+|+|+|||+|.++..++..    .+ .     .++-||+|+.+..
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~----g~-~-----~V~GiD~S~~~l~  159 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGA----GA-K-----LVVGIDPSQLFLC  159 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHc----CC-C-----EEEEEcCCHHHHH
Confidence            34569999999999999866553    34 2     4788999997654

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=90.47  E-value=0.6  Score=43.00  Aligned_cols=47  Identities=9%  Similarity=0.200  Sum_probs=35.2

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +....-+|+|+|||+|..+..+++..    + .    .+.+.+|+|+...+..+++
T Consensus       241 ~~~~g~~VLDlgaG~G~~t~~la~~~----~-~----~~v~a~D~s~~~l~~~~~n  287 (427)
T PRK10901        241 APQNGERVLDACAAPGGKTAHILELA----P-Q----AQVVALDIDAQRLERVREN  287 (427)
T ss_pred             CCCCCCEEEEeCCCCChHHHHHHHHc----C-C----CEEEEEeCCHHHHHHHHHH
Confidence            44445689999999999998887754    2 1    3689999999887765443

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=90.06  E-value=0.73  Score=42.35  Aligned_cols=73  Identities=14%  Similarity=0.063  Sum_probs=53.9

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      -||.|...|..-.+-++++.+.+.-+...+++|+|+-||+|.++.-.+....  .      .-+.+.+|+||...+.-++
T Consensus        16 vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~--g------a~~Vv~nD~n~~Av~~i~~   87 (374)
T TIGR00308        16 VFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIE--G------VREVFANDINPKAVESIKN   87 (374)
T ss_pred             cccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCC--C------CCEEEEEeCCHHHHHHHHH
Confidence            4999999988888777777665544333358999999999999977665421  1      1258999999998887655


Q ss_pred             h
Q 029895          181 N  181 (186)
Q Consensus       181 ~  181 (186)
                      +
T Consensus        88 N   88 (374)
T TIGR00308        88 N   88 (374)
T ss_pred             H
Confidence            4

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PTZ00146 fibrillarin; Provisional

Probab=90.05  E-value=0.62  Score=41.82  Aligned_cols=38  Identities=26%  Similarity=0.339  Sum_probs=29.8

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG  175 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~  175 (186)
                      .-+|+|+|||+|+++..+.+.+-...        +.+.||+|+.+.
T Consensus       133 G~~VLDLGaG~G~~t~~lAdiVG~~G--------~VyAVD~s~r~~  170 (293)
T PTZ00146        133 GSKVLYLGAASGTTVSHVSDLVGPEG--------VVYAVEFSHRSG  170 (293)
T ss_pred             CCEEEEeCCcCCHHHHHHHHHhCCCC--------EEEEEECcHHHH
Confidence            35899999999999999998763222        477899998643

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=89.81  E-value=0.96  Score=38.92  Aligned_cols=43  Identities=19%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      +.+....++|||+|.|++...+    .+.+| +    +.|+-||+...-...
T Consensus        45 ~~~~~pi~lEIGfG~G~~l~~~----A~~nP-~----~nfiGiEi~~~~v~~   87 (227)
T COG0220          45 GNNNAPIVLEIGFGMGEFLVEM----AKKNP-E----KNFLGIEIRVPGVAK   87 (227)
T ss_pred             CCCCCcEEEEECCCCCHHHHHH----HHHCC-C----CCEEEEEEehHHHHH
Confidence            3344468999999999986654    44577 4    479999998765443

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=89.57  E-value=0.62  Score=41.37  Aligned_cols=62  Identities=19%  Similarity=0.226  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      .-.|-++++.-....+  +++-+|+-||+|.|..++-+|++.-   .      -+.++|||.|...+..++..
T Consensus        59 e~~yhEml~h~~~~ah--~~pk~VLiiGgGdG~tlRevlkh~~---v------e~i~~VEID~~Vi~~ar~~l  120 (282)
T COG0421          59 EFIYHEMLAHVPLLAH--PNPKRVLIIGGGDGGTLREVLKHLP---V------ERITMVEIDPAVIELARKYL  120 (282)
T ss_pred             hHHHHHHHHhchhhhC--CCCCeEEEECCCccHHHHHHHhcCC---c------ceEEEEEcCHHHHHHHHHhc
Confidence            3455555555444444  3335999999999999999998852   1      26899999999999987644

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=89.00  E-value=0.97  Score=41.73  Aligned_cols=47  Identities=6%  Similarity=0.068  Sum_probs=34.8

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .....-+|+|+|||+|..+..+++.+.   +     ..+.+.||+|+...+.-++
T Consensus       247 ~~~~g~~VLDlgaG~G~~t~~la~~~~---~-----~~~v~avDi~~~~l~~~~~  293 (444)
T PRK14902        247 DPKGGDTVLDACAAPGGKTTHIAELLK---N-----TGKVVALDIHEHKLKLIEE  293 (444)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhC---C-----CCEEEEEeCCHHHHHHHHH
Confidence            333445899999999999998888652   2     1368999999987665443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=88.98  E-value=1.7  Score=39.26  Aligned_cols=56  Identities=14%  Similarity=0.117  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+.+.+++.+..... +-+++|++||+|+++..+.+.    ..       +.+.||+|+...+..+++
T Consensus       192 ~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~----~~-------~v~~vE~~~~ai~~a~~N  247 (362)
T PRK05031        192 NEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN----FR-------RVLATEISKPSVAAAQYN  247 (362)
T ss_pred             HHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh----CC-------EEEEEECCHHHHHHHHHH
Confidence            456666666655322 246999999999999854433    22       579999999998876554

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=88.67  E-value=1.1  Score=41.28  Aligned_cols=50  Identities=8%  Similarity=0.072  Sum_probs=36.9

Q ss_pred             HHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          123 RTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       123 ~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..+++...-+|+|+|||+|..+..+++.+.         ..+.+.+|+|+...+..+++
T Consensus       232 ~~L~~~~g~~VLDlcag~G~kt~~la~~~~---------~~~v~a~D~~~~~l~~~~~n  281 (426)
T TIGR00563       232 TWLAPQNEETILDACAAPGGKTTHILELAP---------QAQVVALDIHEHRLKRVYEN  281 (426)
T ss_pred             HHhCCCCCCeEEEeCCCccHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHH
Confidence            334544556999999999999998887652         13688999999887764443

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=88.46  E-value=2.5  Score=35.61  Aligned_cols=70  Identities=10%  Similarity=0.147  Sum_probs=44.8

Q ss_pred             HHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEe
Q 029895           90 HVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVE  169 (186)
Q Consensus        90 ~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVE  169 (186)
                      .+.++|.+.+.-|-. .+. +|.+-+    ++... ..+...+|+++|||.|..|.-+.    +..       .+.+-||
T Consensus         2 ~Wd~ry~~~~~~w~~-~~p-~~~l~~----~~~~l-~~~~~~rvLd~GCG~G~da~~LA----~~G-------~~V~gvD   63 (213)
T TIGR03840         2 FWHERWQEGQIGFHQ-SEV-NPLLVK----HWPAL-GLPAGARVFVPLCGKSLDLAWLA----EQG-------HRVLGVE   63 (213)
T ss_pred             hHHHHHhcCCCCCcc-CCC-CHHHHH----HHHhh-CCCCCCeEEEeCCCchhHHHHHH----hCC-------CeEEEEe
Confidence            367888887755532 223 555544    22221 11344699999999999887553    333       2589999


Q ss_pred             cCcchHHH
Q 029895          170 IQSLTGRD  177 (186)
Q Consensus       170 iSp~L~~~  177 (186)
                      +||.-.+.
T Consensus        64 ~S~~Ai~~   71 (213)
T TIGR03840        64 LSEIAVEQ   71 (213)
T ss_pred             CCHHHHHH
Confidence            99997775

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=88.28  E-value=2.6  Score=35.57  Aligned_cols=69  Identities=12%  Similarity=0.123  Sum_probs=45.5

Q ss_pred             HHHHHhhhcCCcc-ccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEE
Q 029895           90 HVDKIYKQSEISW-FTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISV  168 (186)
Q Consensus        90 ~~~~~y~~~~~dF-~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iV  168 (186)
                      .++++|.+.+.-| .+  +. .|.+-+    ++-+. ..+...+|+++|||.|..|.-+.+    ..       .+.+-|
T Consensus         5 ~Wd~rw~~~~~~~~~~--~p-~~~L~~----~~~~~-~~~~~~rvL~~gCG~G~da~~LA~----~G-------~~V~av   65 (218)
T PRK13255          5 FWHEKWAENQIGFHQE--EV-NPLLQK----YWPAL-ALPAGSRVLVPLCGKSLDMLWLAE----QG-------HEVLGV   65 (218)
T ss_pred             HHHHHHcCCCCCCCCC--CC-CHHHHH----HHHhh-CCCCCCeEEEeCCCChHhHHHHHh----CC-------CeEEEE
Confidence            4788898887556 34  34 566533    33222 223446999999999998876543    22       368999


Q ss_pred             ecCcchHHH
Q 029895          169 EIQSLTGRD  177 (186)
Q Consensus       169 EiSp~L~~~  177 (186)
                      |+||.-.++
T Consensus        66 D~s~~Ai~~   74 (218)
T PRK13255         66 ELSELAVEQ   74 (218)
T ss_pred             ccCHHHHHH
Confidence            999985554

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=88.15  E-value=1.7  Score=37.30  Aligned_cols=70  Identities=20%  Similarity=0.232  Sum_probs=43.3

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      |+|-|.|= +=..=.+|=+-..++-+. .+...+|||||+|-...-+..-+.   |     +..|...||||.-.+-..+
T Consensus        17 dVYEPaED-TFlLlDaLekd~~eL~~~-~~~i~lEIG~GSGvvstfL~~~i~---~-----~~~~latDiNp~A~~~Tl~   86 (209)
T KOG3191|consen   17 DVYEPAED-TFLLLDALEKDAAELKGH-NPEICLEIGCGSGVVSTFLASVIG---P-----QALYLATDINPEALEATLE   86 (209)
T ss_pred             hccCccch-hhHHHHHHHHHHHHHhhc-CceeEEEecCCcchHHHHHHHhcC---C-----CceEEEecCCHHHHHHHHH
Confidence            68888886 333323333333222222 256789999999986554433332   2     4569999999988876544

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=87.70  E-value=1.4  Score=40.75  Aligned_cols=47  Identities=6%  Similarity=-0.007  Sum_probs=34.9

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .....-+|+|+|||+|..+.-+.+.+...        -+.+.||+|+...+.-++
T Consensus       247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~--------~~V~avD~s~~~l~~~~~  293 (445)
T PRK14904        247 NPQPGSTVLDLCAAPGGKSTFMAELMQNR--------GQITAVDRYPQKLEKIRS  293 (445)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHhCCC--------cEEEEEECCHHHHHHHHH
Confidence            33344689999999999998887765321        257899999998876443

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=87.51  E-value=1.5  Score=37.75  Aligned_cols=47  Identities=6%  Similarity=0.094  Sum_probs=34.7

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .....-+|+|+|||+|..+..+.+.+.+.        -..+.+|+|+...+.-++
T Consensus        68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~--------g~v~a~D~~~~~l~~~~~  114 (264)
T TIGR00446        68 EPDPPERVLDMAAAPGGKTTQISALMKNE--------GAIVANEFSKSRTKVLIA  114 (264)
T ss_pred             CCCCcCEEEEECCCchHHHHHHHHHcCCC--------CEEEEEcCCHHHHHHHHH
Confidence            33344589999999999999888765322        247889999988775433

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=87.44  E-value=1.4  Score=37.90  Aligned_cols=61  Identities=20%  Similarity=0.260  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...|-++|+...+...  +.+-+|+-||+|.|..++.++.+-    +     -.+.++||++|...+..++.
T Consensus        59 e~~y~e~l~h~~~~~~--~~p~~VLiiGgG~G~~~~ell~~~----~-----~~~i~~VEiD~~Vv~~a~~~  119 (246)
T PF01564_consen   59 EFIYHEMLVHPPLLLH--PNPKRVLIIGGGDGGTARELLKHP----P-----VESITVVEIDPEVVELARKY  119 (246)
T ss_dssp             HHHHHHHHHHHHHHHS--SST-EEEEEESTTSHHHHHHTTST----T------SEEEEEES-HHHHHHHHHH
T ss_pred             hHHHHHHHhhhHhhcC--CCcCceEEEcCCChhhhhhhhhcC----C-----cceEEEEecChHHHHHHHHh
Confidence            3577788776555554  466799999999999999887652    1     13689999999998887654

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>TIGR00095 RNA methyltransferase, RsmD family

Probab=87.02  E-value=1.5  Score=36.14  Aligned_cols=41  Identities=10%  Similarity=0.061  Sum_probs=31.2

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..+++|++||+|.++...+..-    .      -+.+.||+|+...+.-++
T Consensus        50 g~~vLDLfaGsG~lglea~srg----a------~~v~~vE~~~~a~~~~~~   90 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRG----A------KVAFLEEDDRKANQTLKE   90 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCC----C------CEEEEEeCCHHHHHHHHH
Confidence            4589999999999998776642    1      157999999988876444

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=86.86  E-value=1.5  Score=40.43  Aligned_cols=46  Identities=7%  Similarity=-0.039  Sum_probs=34.2

Q ss_pred             hCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          125 ANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       125 ~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ++....-+|+|+|||+|..+..+......        +-+.+.+|+|+...+.-
T Consensus       248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~--------~g~v~a~D~~~~rl~~~  293 (434)
T PRK14901        248 LDPQPGEVILDACAAPGGKTTHIAELMGD--------QGEIWAVDRSASRLKKL  293 (434)
T ss_pred             hCCCCcCEEEEeCCCCchhHHHHHHHhCC--------CceEEEEcCCHHHHHHH
Confidence            34444568999999999999988775432        12588999999877653

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=86.61  E-value=1.1  Score=37.76  Aligned_cols=59  Identities=19%  Similarity=0.188  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          112 WYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      .|||..-..+..++   +....-.+||+|+|.|......--..  ...       .-+-||+.|.+.+..+
T Consensus        22 ~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~--~~~-------~~~GIEi~~~~~~~a~   83 (205)
T PF08123_consen   22 TYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT--GCK-------KSVGIEILPELHDLAE   83 (205)
T ss_dssp             CGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH----S-------EEEEEE-SHHHHHHHH
T ss_pred             ceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc--CCc-------EEEEEEechHHHHHHH
Confidence            45555555554444   54556699999999999865443222  111       3688999999987643

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=86.40  E-value=1.6  Score=40.45  Aligned_cols=48  Identities=13%  Similarity=0.193  Sum_probs=35.9

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +....-+|+|+|||+|..+..++..+...        -+.+.+|+|+...+.-+++
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~--------g~V~a~Dis~~rl~~~~~n  281 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQ--------GKILAVDISREKIQLVEKH  281 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCC--------CEEEEEECCHHHHHHHHHH
Confidence            44445689999999999999988765322        2588999999887764443

>PTZ00357 methyltransferase; Provisional

Probab=86.25  E-value=3  Score=42.38  Aligned_cols=38  Identities=13%  Similarity=0.207  Sum_probs=33.3

Q ss_pred             ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895          131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL  173 (186)
Q Consensus       131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~  173 (186)
                      +.|+=+|||+|=|....|+..++..     -+++.+.||.||.
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~g-----vkVrIyAVEKNPp  739 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALG-----VRLRIFAIEKNLP  739 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcC-----CcEEEEEEecCcc
Confidence            6799999999999999999998764     2678999999966

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=86.22  E-value=1.5  Score=37.69  Aligned_cols=56  Identities=21%  Similarity=0.138  Sum_probs=42.5

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.++.......++-+|+|||.+.|.=+.-++..+..        +-+++.||++|...+.-+++
T Consensus        48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~--------~g~l~tiE~~~e~~~~A~~n  103 (219)
T COG4122          48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPD--------DGRLTTIERDEERAEIAREN  103 (219)
T ss_pred             HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCC--------CCeEEEEeCCHHHHHHHHHH
Confidence            444444444456779999999999999888887643        33799999999999986554

>TIGR00478 tly hemolysin TlyA family protein

Probab=86.10  E-value=2.5  Score=36.31  Aligned_cols=38  Identities=8%  Similarity=0.166  Sum_probs=28.3

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc-chHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS-LTGR  176 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp-~L~~  176 (186)
                      ...+++|+|||+|.++.-+++.    ..      -+.+.||+|+ .|..
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~----ga------~~v~avD~~~~~l~~  113 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK----GA------KEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc----CC------CEEEEEeCCHHHHHH
Confidence            4458999999999999866653    11      2578999999 4544

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK00536 speE spermidine synthase; Provisional

Probab=85.99  E-value=2.3  Score=37.46  Aligned_cols=57  Identities=11%  Similarity=-0.108  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      =+|-|+|+.--+-.+  +.+-+|+=||+|.|-.++-||.+     | +     +.++|||.+...+..++
T Consensus        56 fiYHEmLvHppl~~h--~~pk~VLIiGGGDGg~~REvLkh-----~-~-----~v~mVeID~~Vv~~~k~  112 (262)
T PRK00536         56 HIESELLAHMGGCTK--KELKEVLIVDGFDLELAHQLFKY-----D-T-----HVDFVQADEKILDSFIS  112 (262)
T ss_pred             hhHHHHHHHHHHhhC--CCCCeEEEEcCCchHHHHHHHCc-----C-C-----eeEEEECCHHHHHHHHH
Confidence            367777776555444  55668999999999999999988     3 2     68999999988887665

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=85.89  E-value=1.5  Score=38.67  Aligned_cols=46  Identities=13%  Similarity=0.254  Sum_probs=34.7

Q ss_pred             HhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          124 TANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       124 ~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ......+..||++|||.|...+-+.+-+    | .    -..+-||.||.|-+.-
T Consensus        25 ~Vp~~~~~~v~DLGCGpGnsTelL~~Rw----P-~----A~i~GiDsS~~Mla~A   70 (257)
T COG4106          25 RVPLERPRRVVDLGCGPGNSTELLARRW----P-D----AVITGIDSSPAMLAKA   70 (257)
T ss_pred             hCCccccceeeecCCCCCHHHHHHHHhC----C-C----CeEeeccCCHHHHHHH
Confidence            3344456799999999999887766553    5 2    3678899999998864

>PLN02476 O-methyltransferase

Probab=85.76  E-value=1.5  Score=38.92  Aligned_cols=47  Identities=15%  Similarity=0.014  Sum_probs=35.9

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ..+-+|+|||.|+|.-+.-+...+.+.        -..+-||.+|...+..+++.
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~--------G~V~TiE~d~e~~~~Ar~n~  163 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPES--------GCLVACERDSNSLEVAKRYY  163 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCC--------CEEEEEECCHHHHHHHHHHH
Confidence            345699999999999999888776321        24888999998887765543

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=85.08  E-value=4.1  Score=37.45  Aligned_cols=69  Identities=9%  Similarity=-0.092  Sum_probs=47.1

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      -||.|..-+.......+++++...   ....+|+|++||+|.++.-+.....         ..+.+.+|+||...+.-++
T Consensus        32 vFyqp~~~~nrdl~~~v~~~~~~~---~~~~~vLDl~aGsG~~~l~~a~~~~---------~~~V~a~Din~~Av~~a~~   99 (382)
T PRK04338         32 VFYNPRMELNRDISVLVLRAFGPK---LPRESVLDALSASGIRGIRYALETG---------VEKVTLNDINPDAVELIKK   99 (382)
T ss_pred             eeeCccccchhhHHHHHHHHHHhh---cCCCEEEECCCcccHHHHHHHHHCC---------CCEEEEEeCCHHHHHHHHH
Confidence            488888765666555555554221   0245899999999999977655421         1257999999998886554


Q ss_pred             h
Q 029895          181 N  181 (186)
Q Consensus       181 ~  181 (186)
                      +
T Consensus       100 N  100 (382)
T PRK04338        100 N  100 (382)
T ss_pred             H
Confidence            4

>PLN03075 nicotianamine synthase; Provisional

Probab=85.05  E-value=2.6  Score=37.84  Aligned_cols=47  Identities=19%  Similarity=0.275  Sum_probs=35.7

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      .+-+|+|||||.|-+..-++..  ...|     +.+++-||+||...+..++++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa--~~~p-----~~~~~giD~d~~ai~~Ar~~~  169 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAK--HHLP-----TTSFHNFDIDPSANDVARRLV  169 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHH--hcCC-----CCEEEEEeCCHHHHHHHHHHh
Confidence            5678999999999777766653  2233     468999999999998876654

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=84.65  E-value=2  Score=37.69  Aligned_cols=42  Identities=14%  Similarity=0.135  Sum_probs=27.9

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      +....-+|+|||||-|.++.-+....          .++.+-|.+|+.-.+.
T Consensus        59 ~l~~G~~vLDiGcGwG~~~~~~a~~~----------g~~v~gitlS~~Q~~~  100 (273)
T PF02353_consen   59 GLKPGDRVLDIGCGWGGLAIYAAERY----------GCHVTGITLSEEQAEY  100 (273)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH------------EEEEEES-HHHHHH
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHc----------CcEEEEEECCHHHHHH
Confidence            44455699999999999998776543          2468889999877764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02672 methionine S-methyltransferase

Probab=84.61  E-value=1.4  Score=45.87  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=34.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      .+|+|+|||+|.++..+....    |     ..+.+.||+||...+.-+++.
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~----~-----~~~v~avDis~~Al~~A~~Na  162 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKW----L-----PSKVYGLDINPRAVKVAWINL  162 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHC----C-----CCEEEEEECCHHHHHHHHHHH
Confidence            489999999999999887653    2     136899999999988765543

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=84.55  E-value=2.4  Score=38.38  Aligned_cols=121  Identities=16%  Similarity=0.194  Sum_probs=70.6

Q ss_pred             HHHHHhhcCCCCccccCCCccccCCCcccccccccChHHHHHHHHHHhhhcC-----Ccccccccc-chHHHHHHHHHHH
Q 029895           48 DFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSE-----ISWFTPVEL-FKPWYAHGIAEAI  121 (186)
Q Consensus        48 dFM~~aLY~p~~GYY~~~~~~iG~~G~~~Df~~l~~~~~y~~~~~~~y~~~~-----~dF~Ts~ei-fsp~Fg~~lA~~i  121 (186)
                      ||=+.+.-+|+.-=|.... +-|.  ..|||++=..-.++.+.+-+.|=-.+     .+++.|| | -.=-|=.-|+..+
T Consensus        27 df~~L~~~~p~l~~~v~~~-~~g~--~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPp-iP~R~~Yi~~l~dll  102 (321)
T PRK11727         27 DFAALIQSHPELKPFVILN-PYGE--QSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPP-IPGRADYIHHLADLL  102 (321)
T ss_pred             CHHHHHHhChhHHHHhccC-CCCC--eeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCC-CCcHHHHHHHHHHHh
Confidence            6777777777665555433 2233  35899888888888777666664443     3556665 3 0111212222222


Q ss_pred             HHHh-C---CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          122 MRTA-N---LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       122 ~~~~-~---~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...- +   .....+++|||+|+|-++.-+...    .+     ..+++.+|+++.-.+..+++
T Consensus       103 ~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~----~~-----~~~~~atDId~~Al~~A~~N  157 (321)
T PRK11727        103 AEDNGGVIPRGANVRVLDIGVGANCIYPLIGVH----EY-----GWRFVGSDIDPQALASAQAI  157 (321)
T ss_pred             cccccccCCCCCCceEEEecCCccHHHHHHHhh----CC-----CCEEEEEeCCHHHHHHHHHH
Confidence            1110 0   124579999999999766655332    12     24789999999888775544

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=84.14  E-value=3.1  Score=35.07  Aligned_cols=41  Identities=24%  Similarity=0.378  Sum_probs=28.6

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ....+.+++++|||.|++|.    ||.+..       .+.+.||+|+.-.++
T Consensus        27 ~~~~~g~~LDlgcG~GRNal----yLA~~G-------~~VtAvD~s~~al~~   67 (192)
T PF03848_consen   27 PLLKPGKALDLGCGEGRNAL----YLASQG-------FDVTAVDISPVALEK   67 (192)
T ss_dssp             TTS-SSEEEEES-TTSHHHH----HHHHTT--------EEEEEESSHHHHHH
T ss_pred             hhcCCCcEEEcCCCCcHHHH----HHHHCC-------CeEEEEECCHHHHHH
Confidence            33456799999999999986    555544       257889999965554

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=84.03  E-value=4.7  Score=38.19  Aligned_cols=64  Identities=23%  Similarity=0.311  Sum_probs=48.1

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      +||||.++         .+-|+++..+...-+|++--||+|.+.....++++++.     .++.++..|+++......
T Consensus       167 EfyTP~~v---------~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~-----~~~~~yGqE~~~~t~~l~  230 (489)
T COG0286         167 EFYTPREV---------SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQ-----DEIFIYGQEINDTTYRLA  230 (489)
T ss_pred             ccCChHHH---------HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhc-----cceeEEEEeCCHHHHHHH
Confidence            69999998         44455555432233899999999999999999998753     257899999987665543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=82.83  E-value=5  Score=35.83  Aligned_cols=91  Identities=16%  Similarity=0.288  Sum_probs=45.9

Q ss_pred             ccChHHHHHHHHHHhhhcC--------Cccccccc--------cchH--HHH---HHHHHHHHHHh-C-CCCCceEEEec
Q 029895           81 LQGRKAYMKHVDKIYKQSE--------ISWFTPVE--------LFKP--WYA---HGIAEAIMRTA-N-LSVPLKIYEIG  137 (186)
Q Consensus        81 l~~~~~y~~~~~~~y~~~~--------~dF~Ts~e--------ifsp--~Fg---~~lA~~i~~~~-~-~~~~l~IvEiG  137 (186)
                      ..-..+|...+.+.|+...        +.|.+.++        | -|  -||   +--.+-+++.+ . ....-+|+|+|
T Consensus        91 ~~~~~dW~~~Wk~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~i-dPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG  169 (295)
T PF06325_consen   91 EIEEEDWEEAWKKYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEI-DPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVG  169 (295)
T ss_dssp             E--HHCHHHHHHHH---EEECTTEEEEETT----SSTTSEEEEE-STTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES
T ss_pred             EeccccchHHHHhcCccEEECCcEEEECCCcccCCCCCcEEEEE-CCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence            3445678888888887553        34544443        2 22  444   11222222222 0 12224999999


Q ss_pred             CCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          138 GGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       138 aG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ||||.||-.-+..    ..      -+.+-||+.|.-.+.-+++.
T Consensus       170 ~GSGILaiaA~kl----GA------~~v~a~DiDp~Av~~a~~N~  204 (295)
T PF06325_consen  170 CGSGILAIAAAKL----GA------KKVVAIDIDPLAVEAARENA  204 (295)
T ss_dssp             -TTSHHHHHHHHT----TB------SEEEEEESSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHc----CC------CeEEEecCCHHHHHHHHHHH
Confidence            9999998654332    21      25788999998776655543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=82.43  E-value=4.5  Score=39.90  Aligned_cols=67  Identities=16%  Similarity=0.120  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHhCC-CCCceEEEecCCchhHHHHHHHHHHHhCccccc---------------------------------
Q 029895          115 HGIAEAIMRTANL-SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVY---------------------------------  160 (186)
Q Consensus       115 ~~lA~~i~~~~~~-~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y---------------------------------  160 (186)
                      +.||..|+...+- .....+++-+||+||+.---.....+..| -+.                                 
T Consensus       175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~p-g~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~  253 (702)
T PRK11783        175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAP-GLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA  253 (702)
T ss_pred             HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCC-CccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            6778888776543 33568999999999998554433221111 111                                 


Q ss_pred             -ccceEEEEecCcchHHHHHHhc
Q 029895          161 -NNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       161 -~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                       ...+++-+|+++...+.-+++.
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~  276 (702)
T PRK11783        254 ELPSKFYGSDIDPRVIQAARKNA  276 (702)
T ss_pred             ccCceEEEEECCHHHHHHHHHHH
Confidence             1236899999999988766553

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=81.45  E-value=5.3  Score=38.65  Aligned_cols=49  Identities=22%  Similarity=0.184  Sum_probs=37.1

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHH---hCcccccccceEEEEecCcchH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIML---NAPERVYNNMTYISVEIQSLTG  175 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~---~~P~~~y~~l~Y~iVEiSp~L~  175 (186)
                      ....++|.|+|=|+|.+....++.+++   ..|...-.+++|+.||.-|-.+
T Consensus        55 ~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~  106 (662)
T PRK01747         55 PRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTR  106 (662)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCH
Confidence            345699999999999999999999853   3331233579999999976433

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=80.22  E-value=2.3  Score=38.07  Aligned_cols=45  Identities=18%  Similarity=0.282  Sum_probs=36.6

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      .+..+++|||.+|+|...|-..+-   +      ...+-|||.|.|.++-++.|
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~---~------r~iLGvDID~~LI~~Ark~~  102 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFG---P------RRILGVDIDPVLIQRARKEI  102 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhc---c------ceeeEeeccHHHHHHHHHhc
Confidence            345799999999999999987762   2      24788999999999887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	3e-07
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	4e-07

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 Length = 387

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 44/152 (28%)

Query: 27  QPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKA 86
           Q  L       I    P+ V  ++   L HP+HGY                         
Sbjct: 4   QTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGY------------------------- 38

Query: 87  YMKHVDKIYKQ------SEISWFTPV--ELFKPWYAHGIAEAIMRTANLSVPLKIYEIGG 138
           Y+   D + ++       EIS    +  EL   W A      + + A+    L++ EIG 
Sbjct: 39  YVTR-DPLGREGDFTTSPEIS---QMFGELLGLWSAS-----VWKAADEPQTLRLIEIGP 89

Query: 139 GSGTCAKGVMDYIMLNAPERVYNNMTYISVEI 170
           G GT     +  +    P  +Y +++   VEI
Sbjct: 90  GRGTMMADALRALR-VLPI-LYQSLSVHLVEI 119

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} Length = 432

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 33/145 (22%)

Query: 29  PLKALFSTHIV-GDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAY 87
            L A     I      +    ++   LY P  GY                         Y
Sbjct: 60  ALAASLRAEIASAGGWIPFSRYMERVLYAPGMGY-------------------------Y 94

Query: 88  MKHVDKIYKQSEISW--FTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAK 145
                K  ++++      T  EL  P +A  +A  + +  + S   ++ E G G+G  A 
Sbjct: 95  SGGAQKFGRRADDGSDFVTAPEL-SPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAA 153

Query: 146 GVMDYIMLNAPERVYNNMTYISVEI 170
           G++  +     E       Y  V++
Sbjct: 154 GLLTALAALGVE----LDEYAIVDL 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	100.0
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	100.0
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.56
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.54
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.53
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	97.5
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.48
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.47
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.47
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.39
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.36
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	97.34
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.33
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.29
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.28
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.28
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.23
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.23
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.22
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.21
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.21
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	97.21
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.1
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.09
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.08
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	97.07
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.07
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	97.05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.04
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.02
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.99
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.99
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	96.99
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	96.96
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	96.95
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.95
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.92
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	96.91
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	96.9
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.89
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	96.89
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	96.89
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.88
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.88
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	96.85
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	96.81
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.8
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	96.79
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	96.78
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	96.76
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	96.75
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	96.75
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.75
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	96.75
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.75
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.74
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	96.73
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	96.73
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	96.73
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	96.7
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.69
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.68
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.68
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	96.67
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	96.66
3khk_A	544	Type I restriction-modification system methylation	96.65
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.63
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	96.63
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	96.63
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	96.63
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	96.62
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	96.61
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	96.6
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.59
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	96.58
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	96.58
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.58
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.56
3ege_A	261	Putative methyltransferase from antibiotic biosyn	96.56
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	96.56
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	96.53
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	96.53
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.53
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	96.52
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	96.52
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.5
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	96.49
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	96.48
1ws6_A	171	Methyltransferase; structural genomics, riken stru	96.48
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.47
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.47
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.45
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.45
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	96.42
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.41
3lcc_A	235	Putative methyl chloride transferase; halide methy	96.41
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.4
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	96.39
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.39
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.39
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	96.37
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.36
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	96.35
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	96.34
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.33
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	96.32
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	96.31
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.3
3lkd_A	542	Type I restriction-modification system methyltrans	96.3
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.29
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.28
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.28
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.27
2b3t_A	276	Protein methyltransferase HEMK; translation termin	96.27
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	96.27
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.27
1xxl_A	239	YCGJ protein; structural genomics, protein structu	96.26
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.26
3ufb_A	530	Type I restriction-modification system methyltran	96.26
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.26
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	96.24
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.22
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.22
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.22
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	96.22
2p7i_A	250	Hypothetical protein; putative methyltransferase,	96.21
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	96.18
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	96.16
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	96.15
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.14
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	96.14
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.12
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.12
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	96.1
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	96.08
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.07
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	96.06
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.05
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.03
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.03
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	96.0
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	95.99
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	95.98
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	95.97
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	95.97
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	95.96
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	95.95
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	95.95
3i9f_A	170	Putative type 11 methyltransferase; structural gen	95.87
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	95.85
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	95.85
2b25_A	336	Hypothetical protein; structural genomics, methyl	95.84
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	95.83
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	95.82
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	95.81
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	95.78
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	95.76
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	95.75
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	95.75
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	95.75
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	95.74
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	95.73
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	95.72
3cc8_A	230	Putative methyltransferase; structural genomics, j	95.68
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	95.67
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.65
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.65
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	95.62
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	95.62
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	95.61
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	95.58
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	95.58
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.57
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	95.56
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	95.56
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	95.53
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	95.52
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	95.51
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	95.51
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	95.5
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	95.5
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	95.48
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	95.46
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	95.44
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	95.43
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	95.43
2pt6_A	321	Spermidine synthase; transferase, structural genom	95.43
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	95.41
2o07_A	304	Spermidine synthase; structural genomics, structur	95.41
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.38
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	95.38
2i7c_A	283	Spermidine synthase; transferase, structural genom	95.37
3lpm_A	259	Putative methyltransferase; structural genomics, p	95.36
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	95.36
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	95.36
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	95.35
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	95.34
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	95.3
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	95.26
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	95.11
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	95.1
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	95.09
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	95.06
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	95.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	94.95
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	94.92
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	94.63
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	94.63
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	94.59
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	94.56
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	94.55
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	94.53
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	94.53
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	94.5
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	94.49
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	94.45
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	94.45
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	94.26
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	94.23
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	94.14
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	94.08
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	93.89
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	93.88
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	93.87
3ocj_A	305	Putative exported protein; structural genomics, PS	93.78
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	93.75
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	93.61
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	93.59
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	93.58
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	93.53
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	93.51
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	93.48
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	93.44
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	93.36
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	93.28
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	93.24
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	93.15
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	92.68
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	92.65
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	92.53
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	92.53
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	92.41
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	92.29
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	92.17
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	92.11
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	91.97
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	91.96
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	91.95
2zig_A	297	TTHA0409, putative modification methylase; methylt	91.77
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	91.61
2frn_A	278	Hypothetical protein PH0793; structural genomics,	91.2
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	91.15
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	90.63
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	90.56
3ll7_A	410	Putative methyltransferase; methytransferase, stru	90.48
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	90.17
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	89.88
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	89.85
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	89.84
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	89.06
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	89.03
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	88.59
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	88.34
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	88.33
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	88.02
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	87.95
3sso_A	419	Methyltransferase; macrolide, natural product, ros	87.68
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	87.07
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	86.94
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	86.94
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	86.72
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	86.71
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	86.35
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	85.99
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	85.85
2qm3_A	373	Predicted methyltransferase; putative methyltransf	85.29
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	85.07
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	84.04
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	83.0
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	82.76
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	82.25
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	82.08
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	81.52

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=100.00  E-value=3.5e-37  Score=278.09  Aligned_cols=121  Identities=21%  Similarity=0.354  Sum_probs=106.9

Q ss_pred             hHHHHHhhhhhCCCceeHHHHHHHhhcCCCCccccCCCccccCCCcccccccccChHHHHHHHHHHhhhcCCcccccccc
Q 029895           29 PLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVEL  108 (186)
Q Consensus        29 ~l~~~~~~~I~~~~~i~frdFM~~aLY~p~~GYY~~~~~~iG~~G~~~Df~~l~~~~~y~~~~~~~y~~~~~dF~Ts~ei  108 (186)
                      +|.++|.++|..+|||+|+|||++|||||++|||++.. ++|+.|                           ||+|||||
T Consensus         6 ~L~~~i~~~I~~~G~i~f~~fM~~aLy~P~~GYY~~~~-~~G~~G---------------------------DF~Tapei   57 (387)
T 1zkd_A            6 ALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRD-PLGREG---------------------------DFTTSPEI   57 (387)
T ss_dssp             HHHHHHHHHHHHHCSEEHHHHHHHHHHCTTTCTTTCC------------------------------------CCSHHHH
T ss_pred             HHHHHHHHHHHhcCCeeHHHHHHHHhcCCCCcccCCCC-CCCCCC---------------------------CeeCCCch
Confidence            68899999999899999999999999999999999855 799998                           69999999


Q ss_pred             chHHHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          109 FKPWYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       109 fsp~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                       ||+||++||+|+++.|   +.+.++.|||+|||+|+||.|||++++ ..| +++.+++|+|||+||.|+++|++
T Consensus        58 -s~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~-~~p-~~~~~~~y~iVE~Sp~Lr~~Q~~  129 (387)
T 1zkd_A           58 -SQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALR-VLP-ILYQSLSVHLVEINPVLRQKQQT  129 (387)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHT-TSH-HHHTTEEEEEECCCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHH-hCC-ccccccEEEEEecCHHHHHHHHH
Confidence             9999999999999998   577889999999999999999999998 668 89999999999999999999965

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=100.00  E-value=5e-35  Score=267.43  Aligned_cols=121  Identities=21%  Similarity=0.356  Sum_probs=101.3

Q ss_pred             hhHHHHHhhhhh-CCCceeHHHHHHHhhcCCCCccccCCCcccc----CCCcccccccccChHHHHHHHHHHhhhcCCcc
Q 029895           28 PPLKALFSTHIV-GDKPVLVRDFIHSALYHPKHGYFSQRSRSVG----VLDAAIKFNQLQGRKAYMKHVDKIYKQSEISW  102 (186)
Q Consensus        28 ~~l~~~~~~~I~-~~~~i~frdFM~~aLY~p~~GYY~~~~~~iG----~~G~~~Df~~l~~~~~y~~~~~~~y~~~~~dF  102 (186)
                      .+|+++|+++|. .+|||+|++||++|||||++|||++...+||    +.|                           ||
T Consensus        59 ~~L~~~i~~~I~~~~GpI~fa~yM~~aLy~P~~GYY~~~~~~~G~~~~~~G---------------------------DF  111 (432)
T 4f3n_A           59 EALAASLRAEIASAGGWIPFSRYMERVLYAPGMGYYSGGAQKFGRRADDGS---------------------------DF  111 (432)
T ss_dssp             HHHHHHHHHHHHHTTSCEEHHHHHHHHHHSTTTSSSCC----------------------------------------CC
T ss_pred             HHHHHHHHHHHHHhCCCeeHHHHHHHHhcCCCCCcccCCCCCCCCCCCCCC---------------------------Cc
Confidence            358999999997 5999999999999999999999999877899    888                           69


Q ss_pred             ccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          103 FTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       103 ~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +||||| ||+||++||+|+.+.|....+++|||+|||+|+||.|||+++++..+    ...+|+|||+||.|+++|++
T Consensus       112 iTAPei-S~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~----~~~~y~iVE~Sp~Lr~~Q~~  184 (432)
T 4f3n_A          112 VTAPEL-SPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGV----ELDEYAIVDLSGELRARQRE  184 (432)
T ss_dssp             SSCGGG-HHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTC----CCSEEEEECTTSSSHHHHHH
T ss_pred             cCchhh-hHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCC----CCceEEEEEcCHHHHHHHHH
Confidence            999999 99999999999999994333789999999999999999999998754    13489999999999999855

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.56  E-value=0.00012  Score=62.33  Aligned_cols=61  Identities=13%  Similarity=0.189  Sum_probs=47.8

Q ss_pred             CccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          100 ISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +.|++.+.+         ++.|++..+.... +|+|||||+|.++..+++..    .       +.+.||+|+.+.+.-+
T Consensus        27 QnfL~d~~i---------~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~----~-------~V~avEid~~~~~~l~   85 (271)
T 3fut_A           27 QNFLVSEAH---------LRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG----A-------EVTAIEKDLRLRPVLE   85 (271)
T ss_dssp             CCEECCHHH---------HHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT----C-------CEEEEESCGGGHHHHH
T ss_pred             ccccCCHHH---------HHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC----C-------EEEEEECCHHHHHHHH
Confidence            358888776         6677777766666 99999999999999888752    1       4899999999998754


Q ss_pred             Hh
Q 029895          180 RN  181 (186)
Q Consensus       180 ~~  181 (186)
                      +.
T Consensus        86 ~~   87 (271)
T 3fut_A           86 ET   87 (271)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.54  E-value=0.0002  Score=61.81  Aligned_cols=64  Identities=17%  Similarity=0.195  Sum_probs=48.2

Q ss_pred             cCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895           98 SEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus        98 ~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ..+.|++.+++         ++.|++..+....-+|+|||||+|.++.-+++.    ..       +++.||+|+.+.+.
T Consensus        28 ~GQnfL~d~~i---------~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~----~~-------~V~aVEid~~li~~   87 (295)
T 3gru_A           28 LGQCFLIDKNF---------VNKAVESANLTKDDVVLEIGLGKGILTEELAKN----AK-------KVYVIEIDKSLEPY   87 (295)
T ss_dssp             --CCEECCHHH---------HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH----SS-------EEEEEESCGGGHHH
T ss_pred             cCccccCCHHH---------HHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc----CC-------EEEEEECCHHHHHH
Confidence            34458888766         666777776555669999999999999988874    22       58999999999987


Q ss_pred             HHHh
Q 029895          178 TERN  181 (186)
Q Consensus       178 Q~~~  181 (186)
                      -++.
T Consensus        88 a~~~   91 (295)
T 3gru_A           88 ANKL   91 (295)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.53  E-value=0.0001  Score=62.89  Aligned_cols=67  Identities=16%  Similarity=0.151  Sum_probs=49.8

Q ss_pred             cCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895           98 SEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus        98 ~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ..+.|++.+.+         ++.|++..+....-+|+|||||+|.++..+++.....       ..+.+.||+|+.+.+.
T Consensus        20 ~GQ~fL~d~~i---------~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~-------~~~V~avDid~~~l~~   83 (279)
T 3uzu_A           20 FGQNFLVDHGV---------IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATP-------GSPLHAVELDRDLIGR   83 (279)
T ss_dssp             CSCCEECCHHH---------HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBT-------TBCEEEEECCHHHHHH
T ss_pred             CCccccCCHHH---------HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCc-------CCeEEEEECCHHHHHH
Confidence            34469988876         5667677665556799999999999999998764210       1348999999999887


Q ss_pred             HHH
Q 029895          178 TER  180 (186)
Q Consensus       178 Q~~  180 (186)
                      -++
T Consensus        84 a~~   86 (279)
T 3uzu_A           84 LEQ   86 (279)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=97.50  E-value=0.00023  Score=59.07  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHHHHh---C-CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          110 KPWYAHGIAEAIMRTA---N-LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~---~-~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      +...-..+.+.+....   + ...+.+|+|||||+|.++..+|..+....| .+  .++|+.||+|+.+.+.-
T Consensus        29 ~~~~~~~~~~~l~~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~--~v~~~~vD~S~~ml~~a   98 (292)
T 2aot_A           29 HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYP-GV--CINNEVVEPSAEQIAKY   98 (292)
T ss_dssp             HHHHHHHHHHTHHHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHST-TC--EEEEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHhchhHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCC-Cc--eeeEEEEeCCHHHHHHH
Confidence            3344444444444443   2 234579999999999999999998876555 32  23679999999988753

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.48  E-value=8.7e-05  Score=62.46  Aligned_cols=63  Identities=14%  Similarity=0.099  Sum_probs=48.0

Q ss_pred             CCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895           99 EISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus        99 ~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .+.|++.+.+         ++.|++..+....-+|+|||||+|.++..+++..           .+.+.||+|+.+.+.-
T Consensus         8 GQnFL~d~~i---------~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-----------~~V~avEid~~~~~~~   67 (255)
T 3tqs_A            8 GQHFLHDSFV---------LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-----------DNLALVEIDRDLVAFL   67 (255)
T ss_dssp             -CCEECCHHH---------HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-----------SEEEEEECCHHHHHHH
T ss_pred             CcccccCHHH---------HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-----------CEEEEEECCHHHHHHH
Confidence            3458888776         6667777766566799999999999998887531           2589999999999875


Q ss_pred             HHh
Q 029895          179 ERN  181 (186)
Q Consensus       179 ~~~  181 (186)
                      ++.
T Consensus        68 ~~~   70 (255)
T 3tqs_A           68 QKK   70 (255)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.47  E-value=0.00037  Score=53.54  Aligned_cols=57  Identities=18%  Similarity=0.240  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHhCC-CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          115 HGIAEAIMRTANL-SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       115 ~~lA~~i~~~~~~-~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +.+..++++.+.. ..+.+|+|+|||+|.++..++...    |     ..+++.||+|+.+.+.-++
T Consensus        15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~----~-----~~~v~~vD~~~~~~~~a~~   72 (215)
T 4dzr_A           15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALAC----P-----GVSVTAVDLSMDALAVARR   72 (215)
T ss_dssp             HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHC----T-----TEEEEEEECC---------
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhC----C-----CCeEEEEECCHHHHHHHHH
Confidence            5566777776644 567899999999999998887652    3     2479999999988776443

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.47  E-value=0.00014  Score=60.03  Aligned_cols=62  Identities=23%  Similarity=0.305  Sum_probs=46.7

Q ss_pred             CccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          100 ISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +.|++...+         ++.+++..+.....+|+|+|||+|.++..+++..           .+++.||+|+.+.+.-+
T Consensus        10 Q~fl~d~~~---------~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-----------~~v~~vD~~~~~~~~a~   69 (244)
T 1qam_A           10 QNFITSKHN---------IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-----------NFVTAIEIDHKLCKTTE   69 (244)
T ss_dssp             CCBCCCHHH---------HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-----------SEEEEECSCHHHHHHHH
T ss_pred             ccccCCHHH---------HHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-----------CeEEEEECCHHHHHHHH
Confidence            358877655         5666666655556699999999999998887642           25899999999988755


Q ss_pred             Hh
Q 029895          180 RN  181 (186)
Q Consensus       180 ~~  181 (186)
                      +.
T Consensus        70 ~~   71 (244)
T 1qam_A           70 NK   71 (244)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.39  E-value=0.00029  Score=59.41  Aligned_cols=61  Identities=15%  Similarity=0.239  Sum_probs=46.7

Q ss_pred             CccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          100 ISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +.|++.+++         ++.|++..+....-+|+|+|||+|.++..+++.    ..       +++.||+|+.+.+.-+
T Consensus         8 q~fl~d~~i---------~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~----~~-------~v~~vD~~~~~~~~a~   67 (285)
T 1zq9_A            8 QHILKNPLI---------INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK----AK-------KVVACELDPRLVAELH   67 (285)
T ss_dssp             CCEECCHHH---------HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH----SS-------EEEEEESCHHHHHHHH
T ss_pred             cCccCCHHH---------HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh----CC-------EEEEEECCHHHHHHHH
Confidence            358877765         667777776555679999999999999988764    22       5899999999987644


Q ss_pred             H
Q 029895          180 R  180 (186)
Q Consensus       180 ~  180 (186)
                      +
T Consensus        68 ~   68 (285)
T 1zq9_A           68 K   68 (285)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.36  E-value=0.0005  Score=55.53  Aligned_cols=97  Identities=13%  Similarity=0.124  Sum_probs=58.0

Q ss_pred             cccccccccChHHHHHHHHHHhhhcCCccccccccchHH-----HHHHHHHHHHHHhCC--CCCceEEEecCCchhHHHH
Q 029895           74 AAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPW-----YAHGIAEAIMRTANL--SVPLKIYEIGGGSGTCAKG  146 (186)
Q Consensus        74 ~~~Df~~l~~~~~y~~~~~~~y~~~~~dF~Ts~eifsp~-----Fg~~lA~~i~~~~~~--~~~l~IvEiGaG~GtLA~d  146 (186)
                      ..+||++-.-.....+.+.+.|..  ..|..++..|-|-     -.+.+...++.....  ..+.+|+|+|||+|.++..
T Consensus         5 ~~~d~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~   82 (254)
T 2h00_A            5 VSLNFKDPEAVRALTCTLLREDFG--LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPL   82 (254)
T ss_dssp             CCSCTTSHHHHHHHHHHHHHHHHC--CCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHH
T ss_pred             eEeecCChHHHHHHHHHHHHHcCC--eeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHH
Confidence            356776644444444444444433  3477777666552     112222222222221  2456899999999999988


Q ss_pred             HHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          147 VMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       147 IL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ++....         ..+++.||+|+.+.+.-+++
T Consensus        83 la~~~~---------~~~v~gvD~s~~~~~~a~~~  108 (254)
T 2h00_A           83 LGATLN---------GWYFLATEVDDMCFNYAKKN  108 (254)
T ss_dssp             HHHHHH---------CCEEEEEESCHHHHHHHHHH
T ss_pred             HHHhCC---------CCeEEEEECCHHHHHHHHHH
Confidence            776542         13689999999988765443

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=97.34  E-value=0.00052  Score=53.58  Aligned_cols=80  Identities=8%  Similarity=0.126  Sum_probs=51.9

Q ss_pred             HHHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEE
Q 029895           88 MKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYIS  167 (186)
Q Consensus        88 ~~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~i  167 (186)
                      ...+.+.|...+ .|-...   +++--+.++..+..........+|+|+|||+|.++..++..    .       .+++.
T Consensus        14 ~~~~~~~~~~~~-~w~~~~---~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~-------~~v~~   78 (216)
T 3ofk_A           14 YQSLERELANDD-PWRLDD---NPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH----C-------KRLTV   78 (216)
T ss_dssp             HHHHHHHHTSSS-GGGTTT---CHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG----E-------EEEEE
T ss_pred             HHHHHHHhcCCC-Cccccc---CHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc----C-------CEEEE
Confidence            345666675543 233221   23333356666665655556679999999999988776432    1       26999


Q ss_pred             EecCcchHHHHHHhc
Q 029895          168 VEIQSLTGRDTERNC  182 (186)
Q Consensus       168 VEiSp~L~~~Q~~~~  182 (186)
                      ||+|+.+.+.-++.+
T Consensus        79 vD~s~~~~~~a~~~~   93 (216)
T 3ofk_A           79 IDVMPRAIGRACQRT   93 (216)
T ss_dssp             EESCHHHHHHHHHHT
T ss_pred             EECCHHHHHHHHHhc
Confidence            999999888755543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.33  E-value=0.00084  Score=53.00  Aligned_cols=91  Identities=19%  Similarity=0.097  Sum_probs=54.6

Q ss_pred             cccccccChHHHHHHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCC-chhHHHHHHHHHHHh
Q 029895           76 IKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGG-SGTCAKGVMDYIMLN  154 (186)
Q Consensus        76 ~Df~~l~~~~~y~~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG-~GtLA~dIL~~l~~~  154 (186)
                      +||++......+.+.+.+.|-..  .|...+..|-|-   ..++++..........+|+|+||| +|.++..+....   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~---~~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~---   78 (230)
T 3evz_A            7 LDFSNRQARILYNKAIAKALFGL--DIEYHPKGLVTT---PISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFF---   78 (230)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHCC--CCCCCTTSCCCC---HHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHH---
T ss_pred             eeecCHHHHHHHHHHHHHHhcCC--ceecCCCeEeCC---CchhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhc---
Confidence            57777666666655555444332  244333333331   223444222223445699999999 999998877654   


Q ss_pred             CcccccccceEEEEecCcchHHHHHHh
Q 029895          155 APERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       155 ~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .       .+++.||+|+...+.-+++
T Consensus        79 ~-------~~v~~vD~s~~~~~~a~~~   98 (230)
T 3evz_A           79 N-------CKVTATEVDEEFFEYARRN   98 (230)
T ss_dssp             C-------CEEEEEECCHHHHHHHHHH
T ss_pred             C-------CEEEEEECCHHHHHHHHHH
Confidence            2       2689999999988875443

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.29  E-value=0.00028  Score=59.12  Aligned_cols=61  Identities=11%  Similarity=0.090  Sum_probs=43.7

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .|++.+.+         ++.|++..+....-+|+|||||+|.++.  |..    .+ .    .+++.||+|+.+.+.-++
T Consensus         2 nfL~d~~i---------~~~iv~~~~~~~~~~VLEIG~G~G~lt~--l~~----~~-~----~~v~avEid~~~~~~a~~   61 (252)
T 1qyr_A            2 NFLNDQFV---------IDSIVSAINPQKGQAMVEIGPGLAALTE--PVG----ER-L----DQLTVIELDRDLAARLQT   61 (252)
T ss_dssp             CEECCHHH---------HHHHHHHHCCCTTCCEEEECCTTTTTHH--HHH----TT-C----SCEEEECCCHHHHHHHHT
T ss_pred             CCcCCHHH---------HHHHHHhcCCCCcCEEEEECCCCcHHHH--hhh----CC-C----CeEEEEECCHHHHHHHHH
Confidence            36666554         6677777765555689999999999999  432    22 1    248999999999987554


Q ss_pred             h
Q 029895          181 N  181 (186)
Q Consensus       181 ~  181 (186)
                      .
T Consensus        62 ~   62 (252)
T 1qyr_A           62 H   62 (252)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.28  E-value=0.0007  Score=50.66  Aligned_cols=56  Identities=16%  Similarity=0.147  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.+..++..........+|+|+|||+|.++..+..      +     ..+++.||+|+.+.+.-++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~------~-----~~~v~~vD~~~~~~~~a~~~   76 (183)
T 2yxd_A           21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK------R-----CKFVYAIDYLDGAIEVTKQN   76 (183)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT------T-----SSEEEEEECSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh------c-----CCeEEEEeCCHHHHHHHHHH
Confidence            34556666666555567999999999999887766      1     13799999999988875544

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.28  E-value=0.00018  Score=60.13  Aligned_cols=64  Identities=14%  Similarity=0.195  Sum_probs=47.8

Q ss_pred             cCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895           98 SEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus        98 ~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ..+.|++.+++         ++.|++..+....-+|+|+|||+|.++..+++.    .      ..+++.||+|+.+.+.
T Consensus         9 ~GQnfl~d~~i---------~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~----~------~~~v~avEid~~~~~~   69 (249)
T 3ftd_A            9 FGQHLLVSEGV---------LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH----P------LKKLYVIELDREMVEN   69 (249)
T ss_dssp             CCSSCEECHHH---------HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS----C------CSEEEEECCCHHHHHH
T ss_pred             ccccccCCHHH---------HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc----C------CCeEEEEECCHHHHHH
Confidence            33468888766         666777776555679999999999998877653    1      1368999999999886


Q ss_pred             HHH
Q 029895          178 TER  180 (186)
Q Consensus       178 Q~~  180 (186)
                      -++
T Consensus        70 ~~~   72 (249)
T 3ftd_A           70 LKS   72 (249)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            433

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.23  E-value=0.00099  Score=51.50  Aligned_cols=48  Identities=8%  Similarity=0.099  Sum_probs=35.3

Q ss_pred             HHHHh-CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          121 IMRTA-NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       121 i~~~~-~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +.+.+ ..+...+|+|+|||+|.++..+...    .       .+++.||+|+.+.+.-+
T Consensus        37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~----~-------~~v~~~D~s~~~~~~a~   85 (218)
T 3ou2_A           37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL----A-------DRVTALDGSAEMIAEAG   85 (218)
T ss_dssp             HHHHHTTTTSCSEEEEESCTTSHHHHHHHHH----S-------SEEEEEESCHHHHHHHG
T ss_pred             HHHHHhcCCCCCeEEEECCCCCHHHHHHHhc----C-------CeEEEEeCCHHHHHHHH
Confidence            33443 3444569999999999999887665    2       26899999998877643

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.23  E-value=0.00028  Score=53.23  Aligned_cols=54  Identities=13%  Similarity=0.154  Sum_probs=40.4

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .++.+++........+|+|+|||+|.++..++..    .       .+++.||+|+...+.-++.
T Consensus        40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~----~-------~~v~~~D~~~~~~~~a~~~   93 (194)
T 1dus_A           40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE----V-------KSTTMADINRRAIKLAKEN   93 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG----S-------SEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc----C-------CeEEEEECCHHHHHHHHHH
Confidence            4566666665556679999999999998876553    2       3699999999988765443

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.22  E-value=0.00029  Score=59.88  Aligned_cols=61  Identities=18%  Similarity=0.289  Sum_probs=44.4

Q ss_pred             CccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          100 ISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +.|++.+++         ++.+++..+....-+|+|+|||+|.++..+++.    .       .+++.||+|+.+.+.-+
T Consensus        22 q~fl~~~~i---------~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~----~-------~~v~~vDi~~~~~~~a~   81 (299)
T 2h1r_A           22 QHLLKNPGI---------LDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL----A-------KKVITIDIDSRMISEVK   81 (299)
T ss_dssp             -CEECCHHH---------HHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT----S-------SEEEEECSCHHHHHHHH
T ss_pred             cceecCHHH---------HHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc----C-------CEEEEEECCHHHHHHHH
Confidence            357776655         556666665555669999999999999876542    2       26899999999887644


Q ss_pred             H
Q 029895          180 R  180 (186)
Q Consensus       180 ~  180 (186)
                      +
T Consensus        82 ~   82 (299)
T 2h1r_A           82 K   82 (299)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.21  E-value=0.00034  Score=52.63  Aligned_cols=55  Identities=15%  Similarity=0.098  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +.+..+++.........+|+|+|||+|.++..++...           .+++.||+|+...+.-++
T Consensus        19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-----------~~v~~~D~~~~~~~~a~~   73 (192)
T 1l3i_A           19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-----------RRVYAIDRNPEAISTTEM   73 (192)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-----------SEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-----------CEEEEEECCHHHHHHHHH
Confidence            4456666666665666799999999999988765532           369999999988876544

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.21  E-value=0.00028  Score=56.25  Aligned_cols=58  Identities=16%  Similarity=0.154  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ..+++.+++........+|+|+|||+|.++..+++..   .       .+++.||+|+.+.+.-++.+
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~-------~~v~~vD~s~~~~~~a~~~~   98 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY---G-------AHTHGIDICSNIVNMANERV   98 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH---C-------CEEEEEESCHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc---C-------CEEEEEeCCHHHHHHHHHHh
Confidence            3445666666655566799999999999999887754   2       36999999999888755443

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=97.21  E-value=0.00059  Score=52.55  Aligned_cols=60  Identities=18%  Similarity=0.345  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          109 FKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       109 fsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +.|.+. .++..+.+....... +|+|+|||+|.++..++..     |     ..+++.||+|+.+.+.-++
T Consensus        25 ~~~~~~-~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-----~-----~~~v~~~D~s~~~~~~a~~   84 (219)
T 3dlc_A           25 FAPIYP-IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-----S-----DFSIRALDFSKHMNEIALK   84 (219)
T ss_dssp             TTTHHH-HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-----S-----EEEEEEEESCHHHHHHHHH
T ss_pred             hccccH-HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-----C-----CCeEEEEECCHHHHHHHHH
Confidence            355553 456666666654444 9999999999998877664     2     2479999999998876443

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.10  E-value=0.0018  Score=55.48  Aligned_cols=71  Identities=13%  Similarity=0.084  Sum_probs=50.2

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .|+||.++ ..+..+++.    .........+|+|+|||+|.++..+++.+.+...    ...+++-||+||...+.-+.
T Consensus       107 ~~~TP~~i-~~~~~~ll~----~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~----~~~~v~GiDi~~~~~~~a~~  177 (344)
T 2f8l_A          107 HQMTPDSI-GFIVAYLLE----KVIQKKKNVSILDPACGTANLLTTVINQLELKGD----VDVHASGVDVDDLLISLALV  177 (344)
T ss_dssp             GCCCCHHH-HHHHHHHHH----HHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSS----CEEEEEEEESCHHHHHHHHH
T ss_pred             cCCChHHH-HHHHHHHHH----HhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcC----CCceEEEEECCHHHHHHHHH
Confidence            68999988 444443332    1213345579999999999999999998865321    12578999999998876544

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.09  E-value=0.0016  Score=51.90  Aligned_cols=83  Identities=8%  Similarity=0.109  Sum_probs=48.2

Q ss_pred             cccChHHHHHHHHHHhhhcCCcc---ccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCc
Q 029895           80 QLQGRKAYMKHVDKIYKQSEISW---FTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAP  156 (186)
Q Consensus        80 ~l~~~~~y~~~~~~~y~~~~~dF---~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P  156 (186)
                      .|.+..+|...+.+.+......|   +..++. ..++...+...    .  +...+|+|+|||+|.++..+.+.    . 
T Consensus         3 ~m~~~~~~y~~~~~~~g~y~~~~~~~~~~~~~-~~l~~~~~~~~----~--~~~~~vLDiGcG~G~~~~~l~~~----~-   70 (226)
T 3m33_A            3 AMNHSRESYDRLARELGGYRHPWARVLSGPDP-ELTFDLWLSRL----L--TPQTRVLEAGCGHGPDAARFGPQ----A-   70 (226)
T ss_dssp             -----CHHHHHHHHHHTTTSCCSCCEESSSCT-THHHHHHHHHH----C--CTTCEEEEESCTTSHHHHHHGGG----S-
T ss_pred             hhhhhHHHHHHHHHHhchhhhhhccccCCCCH-HHHHHHHHHhc----C--CCCCeEEEeCCCCCHHHHHHHHc----C-
Confidence            34555666666666554443323   333444 34443333322    2  34568999999999988776543    2 


Q ss_pred             ccccccceEEEEecCcchHHHHHH
Q 029895          157 ERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       157 ~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                            .+++.||+|+.+.+.-++
T Consensus        71 ------~~v~~vD~s~~~~~~a~~   88 (226)
T 3m33_A           71 ------ARWAAYDFSPELLKLARA   88 (226)
T ss_dssp             ------SEEEEEESCHHHHHHHHH
T ss_pred             ------CEEEEEECCHHHHHHHHH
Confidence                  268999999998876443

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.08  E-value=0.0031  Score=50.10  Aligned_cols=50  Identities=20%  Similarity=0.282  Sum_probs=36.6

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ....+|+|+|||+|.++..+........+   ....+++.||+|+.+.+.-++
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~---~~~~~v~~vD~~~~~~~~a~~  132 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGV---DADTRIVGIEHQAELVRRSKA  132 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCC---CTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccC---CccCEEEEEEcCHHHHHHHHH
Confidence            34469999999999999998886643111   112479999999998886443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=97.07  E-value=0.00061  Score=53.15  Aligned_cols=55  Identities=11%  Similarity=0.206  Sum_probs=41.2

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +..+++.+......+|+|+|||+|.++..++...   .|     ..+++.||+|+.+.+.-++
T Consensus        26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~-----~~~v~~vD~s~~~~~~a~~   80 (219)
T 3dh0_A           26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMV---GE-----KGKVYAIDVQEEMVNYAWE   80 (219)
T ss_dssp             HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHH---TT-----TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHh---CC-----CcEEEEEECCHHHHHHHHH
Confidence            3455556665666799999999999999888764   22     2379999999998876443

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.07  E-value=0.00096  Score=59.50  Aligned_cols=71  Identities=18%  Similarity=0.243  Sum_probs=52.1

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCccc-----ccccceEEEEecCcchH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPER-----VYNNMTYISVEIQSLTG  175 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~-----~y~~l~Y~iVEiSp~L~  175 (186)
                      .|+||.++         ++.|++...+....+|+|.|||+|.+...+.+++++... +     .....+++-+|++|...
T Consensus       152 ~fyTP~~v---------~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~-~~~~~~~~~~~~i~G~Ei~~~~~  221 (445)
T 2okc_A          152 QYFTPRPL---------IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSA-SKEKRDFLRDKALHGVDNTPLVV  221 (445)
T ss_dssp             GGCCCHHH---------HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC--CCHHHHHHHHTTEEEEESCHHHH
T ss_pred             cccCcHHH---------HHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcC-CHHHHHhhcCeEEEEEeCCHHHH
Confidence            69999876         566666666555679999999999999999999865321 1     01234689999999888


Q ss_pred             HHHHHh
Q 029895          176 RDTERN  181 (186)
Q Consensus       176 ~~Q~~~  181 (186)
                      +..+.+
T Consensus       222 ~lA~~n  227 (445)
T 2okc_A          222 TLASMN  227 (445)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=97.05  E-value=0.00066  Score=56.72  Aligned_cols=45  Identities=18%  Similarity=0.262  Sum_probs=34.7

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...+|+|+|||+|.++..++..+..       ..++++-||+||.+.+.-++
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~-------~~~~v~gvD~s~~ml~~A~~  114 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHH-------DNCKIIAIDNSPAMIERCRR  114 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCS-------SSCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCC-------CCCEEEEEECCHHHHHHHHH
Confidence            3458999999999999887654321       34689999999999887544

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.04  E-value=0.0011  Score=49.82  Aligned_cols=54  Identities=20%  Similarity=0.263  Sum_probs=39.7

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...++..+......+|+|+|||+|.++..++..+    |     ..+++.||+|+.+.+.-++
T Consensus        14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~----~-----~~~v~~vD~~~~~~~~a~~   67 (178)
T 3hm2_A           14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRST----P-----QTTAVCFEISEERRERILS   67 (178)
T ss_dssp             HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS----S-----SEEEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC----C-----CCeEEEEeCCHHHHHHHHH
Confidence            4455555555566799999999999988776542    3     3579999999988776443

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.02  E-value=0.0022  Score=49.89  Aligned_cols=53  Identities=21%  Similarity=0.184  Sum_probs=39.6

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+.+.+......+|+|+|||+|.++..+...    .       .+++.||+|+.+.+.-+++
T Consensus        66 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~----~-------~~v~~vD~~~~~~~~a~~~  118 (210)
T 3lbf_A           66 VARMTELLELTPQSRVLEIGTGSGYQTAILAHL----V-------QHVCSVERIKGLQWQARRR  118 (210)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH----S-------SEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh----C-------CEEEEEecCHHHHHHHHHH
Confidence            344455555556679999999999999877654    2       2689999999988875443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.99  E-value=0.0023  Score=49.76  Aligned_cols=55  Identities=16%  Similarity=0.218  Sum_probs=41.0

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +...++.........+|+|+|||+|.++..+.+.    .|     ..+++.||+|+...+.-++
T Consensus        28 i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~----~~-----~~~v~~vD~s~~~~~~a~~   82 (204)
T 3e05_A           28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNL----MP-----NGRIFALERNPQYLGFIRD   82 (204)
T ss_dssp             HHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHH----CT-----TSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHH----CC-----CCEEEEEeCCHHHHHHHHH
Confidence            3455555666556679999999999998877665    23     2478999999998887544

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.99  E-value=0.002  Score=51.42  Aligned_cols=54  Identities=19%  Similarity=0.230  Sum_probs=40.0

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+..++.........+|+|+|||+|.++..++...   .       .+++.||+|+.+.+.-++
T Consensus        24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~---~-------~~v~gvD~s~~~l~~a~~   77 (256)
T 1nkv_A           24 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH---G-------ITGTGIDMSSLFTAQAKR   77 (256)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT---C-------CEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---C-------CeEEEEeCCHHHHHHHHH
Confidence            34555566655566799999999999998877653   2       268999999998776433

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=96.99  E-value=0.0018  Score=52.49  Aligned_cols=43  Identities=16%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ....+|+|+|||+|.++..+...     +     ..+++.||+|+.+.+.-++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-----~-----~~~v~gvD~s~~~~~~a~~  105 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-----G-----IGEYYGVDIAEVSINDARV  105 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-----T-----CSEEEEEESCHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-----C-----CCEEEEEECCHHHHHHHHH
Confidence            44569999999999988775432     1     1369999999998876443

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=96.96  E-value=0.00084  Score=51.95  Aligned_cols=53  Identities=15%  Similarity=0.216  Sum_probs=37.0

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ....+++.+....+.+|+|+|||+|.++..+++.    .       .+++.||+|+.+.+.-++
T Consensus        40 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~-------~~v~~vD~s~~~~~~a~~   92 (227)
T 3e8s_A           40 TDQAILLAILGRQPERVLDLGCGEGWLLRALADR----G-------IEAVGVDGDRTLVDAARA   92 (227)
T ss_dssp             HHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT----T-------CEEEEEESCHHHHHHHHH
T ss_pred             ccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC----C-------CEEEEEcCCHHHHHHHHH
Confidence            3344444443344579999999999988666543    2       268999999988776443

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=96.95  E-value=0.00078  Score=58.19  Aligned_cols=59  Identities=15%  Similarity=0.146  Sum_probs=44.0

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      .|+||.++         +++|++........+|+|+|||+|.++..+++.+.   +     ..+++.||+++...+
T Consensus        20 ~~~TP~~l---------~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~---~-----~~~i~gvDi~~~~~~   78 (421)
T 2ih2_A           20 RVETPPEV---------VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHG---T-----AYRFVGVEIDPKALD   78 (421)
T ss_dssp             -CCCCHHH---------HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHC---S-----CSEEEEEESCTTTCC
T ss_pred             eEeCCHHH---------HHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhC---C-----CCeEEEEECCHHHHH
Confidence            69999877         66676666544455999999999999988877641   1     236899999997653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.95  E-value=0.0019  Score=50.44  Aligned_cols=55  Identities=22%  Similarity=0.286  Sum_probs=40.6

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...+.+........+|+|+|||+|.++..++...   .|     ..+++.||+|+.+.+.-++
T Consensus        66 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~-----~~~v~~vD~~~~~~~~a~~  120 (215)
T 2yxe_A           66 VGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIV---GE-----DGLVVSIERIPELAEKAER  120 (215)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHH---CT-----TSEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHh---CC-----CCEEEEEeCCHHHHHHHHH
Confidence            3455555555556699999999999999887764   22     1369999999998876544

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.92  E-value=0.0028  Score=49.95  Aligned_cols=50  Identities=18%  Similarity=0.070  Sum_probs=36.2

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHh-CcccccccceEEEEecCcchHHHHHHh
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLN-APERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~-~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .....+|+|+|||+|.++..+....... .|     ..+++.||+|+.+.+.-++.
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~-----~~~v~~vD~~~~~~~~a~~~  128 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENK-----NSYVIGLERVKDLVNFSLEN  128 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCT-----TCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCC-----CCEEEEEeCCHHHHHHHHHH
Confidence            3445699999999999998887654210 02     24799999999988865443

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=96.91  E-value=0.001  Score=61.55  Aligned_cols=71  Identities=17%  Similarity=0.190  Sum_probs=53.8

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCccccc----------ccceEEEEec
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVY----------NNMTYISVEI  170 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y----------~~l~Y~iVEi  170 (186)
                      .||||.++         ++.|++...+....+|+|.+||+|.+...+.+++++..+ +..          ...+++-+|+
T Consensus       150 ~fyTP~~i---------v~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~-~~~~~~~~~~~~~~~~~i~GiEi  219 (541)
T 2ar0_A          150 QYFTPRPL---------IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTN-DLDDLDGDTQDFQIHRAFIGLEL  219 (541)
T ss_dssp             CCCCCHHH---------HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTT-TTTTSCHHHHHHHHHTSEEEEES
T ss_pred             eeeCCHHH---------HHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhc-ccccCCHHHHhhhhcceEEEEcC
Confidence            69999987         455555555555679999999999999999999976543 221          1347899999


Q ss_pred             CcchHHHHHHh
Q 029895          171 QSLTGRDTERN  181 (186)
Q Consensus       171 Sp~L~~~Q~~~  181 (186)
                      +|...+..+.+
T Consensus       220 d~~~~~lA~~n  230 (541)
T 2ar0_A          220 VPGTRRLALMN  230 (541)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99988876544

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=96.90  E-value=0.00057  Score=55.77  Aligned_cols=58  Identities=22%  Similarity=0.301  Sum_probs=44.4

Q ss_pred             CccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          100 ISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      +.|++..++         ++.+++..+....-+|+|+|||+|.++..+++..           .+++.||+|+.+.+.
T Consensus         9 q~fl~~~~~---------~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-----------~~v~~id~~~~~~~~   66 (245)
T 1yub_A            9 QNFLTSEKV---------LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-----------KQVTSIELDSHLFNL   66 (245)
T ss_dssp             CCBCCCTTT---------HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-----------SEEEESSSSCSSSSS
T ss_pred             CCCCCCHHH---------HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-----------CeEEEEECCHHHHHH
Confidence            358988877         5666666665556789999999999998876541           258899999987654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.89  E-value=0.001  Score=51.13  Aligned_cols=73  Identities=14%  Similarity=0.148  Sum_probs=46.8

Q ss_pred             HHHHHHhhhcC----CccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccce
Q 029895           89 KHVDKIYKQSE----ISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMT  164 (186)
Q Consensus        89 ~~~~~~y~~~~----~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~  164 (186)
                      .++++.|....    .+|+.....        +...+....  ....+|+|+|||+|.++..++..    .+ .     +
T Consensus         8 ~~W~~~y~~~~~~~~~~~~~~~~~--------~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~----~~-~-----~   67 (215)
T 2pxx_A            8 EYWDQRYQGAADSAPYDWFGDFSS--------FRALLEPEL--RPEDRILVLGCGNSALSYELFLG----GF-P-----N   67 (215)
T ss_dssp             HHHHHHTTTTTTSCCCCTTCCHHH--------HHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHT----TC-C-----C
T ss_pred             hHHHHHhccCCCCCCcccccCHHH--------HHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHc----CC-C-----c
Confidence            45667777654    245544321        233333322  34568999999999999877653    22 1     6


Q ss_pred             EEEEecCcchHHHHHHh
Q 029895          165 YISVEIQSLTGRDTERN  181 (186)
Q Consensus       165 Y~iVEiSp~L~~~Q~~~  181 (186)
                      ++.||+|+.+.+.-++.
T Consensus        68 v~~~D~s~~~~~~a~~~   84 (215)
T 2pxx_A           68 VTSVDYSSVVVAAMQAC   84 (215)
T ss_dssp             EEEEESCHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHh
Confidence            89999999988875443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=96.89  E-value=0.0031  Score=48.93  Aligned_cols=46  Identities=17%  Similarity=0.172  Sum_probs=34.2

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ......+|+|+|||+|.++..+...    .+      .+++.||+|+...+.-+++
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~----~~------~~v~~vD~~~~~~~~a~~~   91 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLL----GA------KEVICVEVDKEAVDVLIEN   91 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHT----TC------SEEEEEESCHHHHHHHHHH
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHc----CC------CEEEEEECCHHHHHHHHHH
Confidence            3344569999999999998876543    22      2689999999988875544

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=96.89  E-value=0.0045  Score=50.12  Aligned_cols=77  Identities=12%  Similarity=0.262  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceE
Q 029895           86 AYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTY  165 (186)
Q Consensus        86 ~y~~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y  165 (186)
                      .....+++.|.+.    ......  ...-+.+.+.+.....  .+.+|+|+|||+|.++..+.+.    .       .++
T Consensus        19 ~~~~~~a~~Yd~~----~~~~~~--~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~----~-------~~v   79 (260)
T 2avn_A           19 EFYDRIARAYDSM----YETPKW--KLYHRLIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQER----G-------FEV   79 (260)
T ss_dssp             HHHHHHHHHHGGG----GCSHHH--HHHHHHHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTT----T-------CEE
T ss_pred             chhhHHHHHHHHh----ccccch--hHHHHHHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHc----C-------CeE
Confidence            4556677888644    221111  2233445555555443  5569999999999998866542    2       268


Q ss_pred             EEEecCcchHHHHHHh
Q 029895          166 ISVEIQSLTGRDTERN  181 (186)
Q Consensus       166 ~iVEiSp~L~~~Q~~~  181 (186)
                      +.||+|+.+.+.-++.
T Consensus        80 ~gvD~s~~~l~~a~~~   95 (260)
T 2avn_A           80 VLVDPSKEMLEVAREK   95 (260)
T ss_dssp             EEEESCHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHhh
Confidence            9999999988875443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.88  E-value=0.0025  Score=50.29  Aligned_cols=53  Identities=21%  Similarity=0.231  Sum_probs=39.8

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+++........+|+|+|||+|.++..+....           .+++.||+|+.+.+.-++.
T Consensus        59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-----------~~v~~vD~~~~~~~~a~~~  111 (231)
T 1vbf_A           59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-----------DKVVSVEINEKMYNYASKL  111 (231)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-----------SEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-----------CEEEEEeCCHHHHHHHHHH
Confidence            4455555555556699999999999998876642           2689999999998875544

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.88  E-value=0.0022  Score=56.08  Aligned_cols=64  Identities=23%  Similarity=0.222  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHH---HhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          110 KPWYAHGIAEAIMR---TANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       110 sp~Fg~~lA~~i~~---~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      .-.|-++++..+..   ....+.+++|+|||||+|.+++-++..    .| .    .+.+.||++|.+.+.-++..
T Consensus        67 e~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~----~p-~----~~v~~VEidp~vi~~Ar~~~  133 (317)
T 3gjy_A           67 EFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADV----YP-Q----SRNTVVELDAELARLSREWF  133 (317)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHH----ST-T----CEEEEEESCHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHH----CC-C----cEEEEEECCHHHHHHHHHhc
Confidence            44677888888776   344455679999999999999888775    24 2    36899999999998866543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=96.85  E-value=0.0017  Score=51.18  Aligned_cols=61  Identities=16%  Similarity=0.242  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHhC-CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          111 PWYAHGIAEAIMRTAN-LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~-~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      |.+.+.+ +.+..... ...+.+|+|+|||+|.++..+++..    |     ..+++.||+|+.+.+.-++.
T Consensus        26 ~~~~~~~-~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----~-----~~~v~~vD~s~~~~~~a~~~   87 (234)
T 3dtn_A           26 PCFDDFY-GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY----P-----EATFTLVDMSEKMLEIAKNR   87 (234)
T ss_dssp             TTHHHHH-HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC----T-----TCEEEEEESCHHHHHHHHHH
T ss_pred             cCHHHHH-HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC----C-----CCeEEEEECCHHHHHHHHHh
Confidence            3343333 34444442 4556799999999999998877653    3     24799999999988875544

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=96.81  E-value=0.0035  Score=51.20  Aligned_cols=41  Identities=17%  Similarity=0.323  Sum_probs=32.4

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+.+|+|+|||+|.++..+...    .       .+++.||+|+.+.+.-++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~----~-------~~v~gvD~s~~~~~~a~~  108 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER----G-------HQVILCDLSAQMIDRAKQ  108 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT----T-------CEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHC----C-------CEEEEEECCHHHHHHHHH
Confidence            3679999999999998877654    2       268999999988876443

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.80  E-value=0.00062  Score=57.72  Aligned_cols=54  Identities=9%  Similarity=0.033  Sum_probs=40.2

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .++.++.........+|+|+|||+|.++.-+.+.    .       .+++.||+|+.+.+.-++.
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~----g-------~~V~gvD~S~~ml~~Ar~~   86 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALER----G-------ASVTVFDFSQRMCDDLAEA   86 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT----T-------CEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc----C-------CEEEEEECCHHHHHHHHHH
Confidence            3556666666566679999999999998876542    2       2589999999998875443

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=96.79  E-value=0.002  Score=50.54  Aligned_cols=55  Identities=11%  Similarity=0.137  Sum_probs=38.7

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..++.+.+....+.+|+|+|||+|.++..+.+.    .|     ..+++.||+|+.+.+.-++.
T Consensus        18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~-----~~~v~gvD~s~~~~~~a~~~   72 (217)
T 3jwh_A           18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKD----SF-----FEQITGVDVSYRSLEIAQER   72 (217)
T ss_dssp             HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHC----TT-----CSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhh----CC-----CCEEEEEECCHHHHHHHHHH
Confidence            444444443344569999999999998776542    22     24799999999988875443

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=96.78  E-value=0.0078  Score=47.83  Aligned_cols=43  Identities=16%  Similarity=0.286  Sum_probs=33.4

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ....+|+|+|||+|.++..+.+.    .+       +++.||+|+.+.+.-++.
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~----~~-------~v~gvD~s~~~~~~a~~~   97 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQF----FP-------RVIGLDVSKSALEIAAKE   97 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHH----SS-------CEEEEESCHHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHh----CC-------CEEEEECCHHHHHHHHHh
Confidence            44568999999999998887654    22       588999999888765443

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=96.76  E-value=0.0033  Score=49.93  Aligned_cols=53  Identities=13%  Similarity=0.125  Sum_probs=38.7

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.++..+......+|+|+|||+|.++..+++..   .       .+++.||+|+.+.+.-++.
T Consensus        83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~---~-------~~v~~vD~s~~~~~~a~~~  135 (254)
T 1xtp_A           83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL---Y-------ATTDLLEPVKHMLEEAKRE  135 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH---C-------SEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh---c-------CEEEEEeCCHHHHHHHHHH
Confidence            333444444456799999999999998887654   2       2689999999988875443

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=96.75  E-value=0.0019  Score=52.77  Aligned_cols=51  Identities=8%  Similarity=0.049  Sum_probs=36.6

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .++........+.+|+|+|||+|.++..+++.    ..       +++.||+|+.+.+.-++
T Consensus        47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~-------~v~gvD~s~~~l~~a~~   97 (293)
T 3thr_A           47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE----GF-------SVTSVDASDKMLKYALK   97 (293)
T ss_dssp             HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT----TC-------EEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC----CC-------eEEEEECCHHHHHHHHH
Confidence            44444443334569999999999998877653    22       68999999998876443

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=96.75  E-value=0.0011  Score=53.29  Aligned_cols=44  Identities=16%  Similarity=0.172  Sum_probs=33.9

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+.+|+|+|||+|.++..++..    .|     ..+++.||+|+.+.+.-++.
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~----~~-----~~~v~~vD~~~~~~~~a~~~  114 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASI----SD-----DIHVTTIERNETMIQYAKQN  114 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTT----CT-----TCEEEEEECCHHHHHHHHHH
T ss_pred             CCCEEEEEeCchhHHHHHHHHh----CC-----CCEEEEEECCHHHHHHHHHH
Confidence            4569999999999999877652    22     24799999999988875443

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.75  E-value=0.0026  Score=48.14  Aligned_cols=55  Identities=16%  Similarity=0.091  Sum_probs=38.8

Q ss_pred             HHHHHHHHhC-CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          117 IAEAIMRTAN-LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       117 lA~~i~~~~~-~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +...+.+... .....+|+|+|||+|.++..++..     +     ..+++.||+|+.+.+.-+++
T Consensus        18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-----~-----~~~v~~vD~~~~~~~~a~~~   73 (177)
T 2esr_A           18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-----G-----MSAAVLVEKNRKAQAIIQDN   73 (177)
T ss_dssp             CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-----T-----CCEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-----C-----CCEEEEEECCHHHHHHHHHH
Confidence            3445555553 344569999999999999876642     2     13689999999988875443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=96.75  E-value=0.0043  Score=49.18  Aligned_cols=59  Identities=17%  Similarity=0.193  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +|.-++.|...+...    .+.+|+|+|||+|.++..+...+.   +     ..+++.||+||.+.+.-++
T Consensus        43 ~~~~~~~l~~l~~~~----~~~~vLdiG~G~G~~~~~la~~~~---~-----~~~v~~vD~~~~~~~~a~~  101 (221)
T 3u81_A           43 GDAKGQIMDAVIREY----SPSLVLELGAYCGYSAVRMARLLQ---P-----GARLLTMEINPDCAAITQQ  101 (221)
T ss_dssp             CHHHHHHHHHHHHHH----CCSEEEEECCTTSHHHHHHHTTSC---T-----TCEEEEEESCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc----CCCEEEEECCCCCHHHHHHHHhCC---C-----CCEEEEEeCChHHHHHHHH
Confidence            666676666544322    345899999999999988776542   1     2479999999998886544

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.75  E-value=0.0025  Score=51.20  Aligned_cols=56  Identities=27%  Similarity=0.211  Sum_probs=42.1

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.+++...+.....+|+|+|||+|.++..+++.+   .|     ..+++.||+|+...+.-+++
T Consensus        82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~-----~~~v~~~D~~~~~~~~a~~~  137 (255)
T 3mb5_A           82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIV---GP-----EGRVVSYEIREDFAKLAWEN  137 (255)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHH---CT-----TSEEEEECSCHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHh---CC-----CeEEEEEecCHHHHHHHHHH
Confidence            3466666665666799999999999999888764   22     24689999999888765444

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.74  E-value=0.0033  Score=50.28  Aligned_cols=53  Identities=23%  Similarity=0.260  Sum_probs=39.0

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +..+++........+|+|+|||+|.++..+.+...          .+++.||+|+.+.+.-++
T Consensus        80 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~----------~~v~~vD~~~~~~~~a~~  132 (235)
T 1jg1_A           80 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK----------TDVYTIERIPELVEFAKR  132 (235)
T ss_dssp             HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC----------SCEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC----------CEEEEEeCCHHHHHHHHH
Confidence            34445555544556899999999999998876541          258999999998876544

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=96.73  E-value=0.0019  Score=50.56  Aligned_cols=56  Identities=9%  Similarity=0.089  Sum_probs=39.4

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..+++.+.+....+.+|+|+|||+|.++..+.+.    .|     ..+++.||+|+.+.+..++.
T Consensus        17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~-----~~~v~gvD~s~~~~~~a~~~   72 (219)
T 3jwg_A           17 RLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKD----KS-----FEQITGVDVSYSVLERAKDR   72 (219)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTS----TT-----CCEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhc----CC-----CCEEEEEECCHHHHHHHHHH
Confidence            3445555553345569999999999988766542    23     24799999999998875543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=96.73  E-value=0.004  Score=49.41  Aligned_cols=56  Identities=16%  Similarity=0.178  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.+...++.........+|+|+|||+|.++..+...    .       .+++.||+|+...+.-+++
T Consensus        41 ~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~----~-------~~v~~vD~s~~~~~~a~~~   96 (204)
T 3njr_A           41 SPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA----G-------GRAITIEPRADRIENIQKN   96 (204)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT----T-------CEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc----C-------CEEEEEeCCHHHHHHHHHH
Confidence            344555666666556679999999999998776654    2       2689999999988864443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=96.73  E-value=0.00075  Score=55.75  Aligned_cols=57  Identities=16%  Similarity=0.316  Sum_probs=40.6

Q ss_pred             HHHHHHHHHh-CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          116 GIAEAIMRTA-NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       116 ~lA~~i~~~~-~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ....++.+.. ....+.+|+|+|||+|.++..+++.+    |    ...+++.||+||.+.+.-++
T Consensus         8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~----~~~~v~gvD~s~~~~~~a~~   65 (284)
T 3gu3_A            8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLL----P----EGSKYTGIDSGETLLAEARE   65 (284)
T ss_dssp             HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTS----C----TTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhC----C----CCCEEEEEECCHHHHHHHHH
Confidence            3345555544 45567799999999999988775542    3    13579999999998876444

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=96.70  E-value=0.0032  Score=50.74  Aligned_cols=52  Identities=15%  Similarity=0.193  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+++.+....  +.+.+|+|+|||+|.++..+++.    .+       +++.||+|+.+.+.-++
T Consensus        39 ~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~----~~-------~v~gvD~s~~~~~~a~~   90 (263)
T 3pfg_A           39 DLAALVRRHS--PKAASLLDVACGTGMHLRHLADS----FG-------TVEGLELSADMLAIARR   90 (263)
T ss_dssp             HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTT----SS-------EEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHc----CC-------eEEEEECCHHHHHHHHh
Confidence            3444444433  34579999999999998766543    22       68999999998876544

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.69  E-value=0.0013  Score=53.33  Aligned_cols=46  Identities=15%  Similarity=-0.011  Sum_probs=34.7

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhcc
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNCW  183 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~~  183 (186)
                      +...+|+|||||+|.++.-|.+    ..|      .++++||+||.+.++-++..+
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~----~~~------~~v~~id~~~~~~~~a~~~~~  104 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQE----API------DEHWIIECNDGVFQRLRDWAP  104 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTT----SCE------EEEEEEECCHHHHHHHHHHGG
T ss_pred             cCCCeEEEECCCccHHHHHHHH----hCC------cEEEEEeCCHHHHHHHHHHHh
Confidence            3456999999999998876543    345      268999999999887655443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.68  E-value=0.0043  Score=50.02  Aligned_cols=56  Identities=9%  Similarity=0.172  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +.+...+++........+|+|+|||+|.++..+....    .      .+++.||+|+.+.+.-++
T Consensus        47 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~------~~v~gvD~s~~~~~~a~~  102 (273)
T 3bus_A           47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR----D------VRVTGISISRPQVNQANA  102 (273)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS----C------CEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc----C------CEEEEEeCCHHHHHHHHH
Confidence            3445666666665566799999999999998776532    1      379999999988776433

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.68  E-value=0.006  Score=50.00  Aligned_cols=53  Identities=17%  Similarity=0.221  Sum_probs=39.3

Q ss_pred             HHHHHHHHh----CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          117 IAEAIMRTA----NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       117 lA~~i~~~~----~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      ....++...    ......+|+|+|||+|.++..+++..    +      .+++.||+|+.+.+.-+
T Consensus        66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~------~~v~gvD~s~~~~~~a~  122 (297)
T 2o57_A           66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF----G------VSIDCLNIAPVQNKRNE  122 (297)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH----C------CEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh----C------CEEEEEeCCHHHHHHHH
Confidence            344555555    44566799999999999999887653    2      26999999999877643

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=96.67  E-value=0.0044  Score=47.90  Aligned_cols=42  Identities=12%  Similarity=0.126  Sum_probs=33.2

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..+|+|+|||+|.++..++...    |     ..+++.||+|+...+.-++
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~----~-----~~~v~~vD~s~~~~~~a~~  107 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVR----P-----EAHFTLLDSLGKRVRFLRQ  107 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHC----T-----TSEEEEEESCHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHC----C-----CCEEEEEeCCHHHHHHHHH
Confidence            4599999999999998877642    3     2479999999998776444

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.0012  Score=54.71  Aligned_cols=57  Identities=14%  Similarity=0.182  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..+...+..... ....+|+|+|||+|.++..+++.+.   +     ..+++.||+|+.+.+.-++
T Consensus        23 ~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~---~-----~~~v~gvD~s~~~~~~a~~   79 (299)
T 3g5t_A           23 SDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELK---P-----FEQIIGSDLSATMIKTAEV   79 (299)
T ss_dssp             HHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSS---C-----CSEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCC---C-----CCEEEEEeCCHHHHHHHHH
Confidence            334445544442 3567999999999999998886531   2     2479999999998876544

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=96.65  E-value=0.0024  Score=59.25  Aligned_cols=71  Identities=17%  Similarity=0.166  Sum_probs=52.1

Q ss_pred             CccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccc-------cccceEEEEecCc
Q 029895          100 ISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERV-------YNNMTYISVEIQS  172 (186)
Q Consensus       100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~-------y~~l~Y~iVEiSp  172 (186)
                      ..||||.++         ++.|++...+ .+.+|+|.+||+|.|...+++++++..+ +.       ....+++-+|++|
T Consensus       225 G~fyTP~~V---------v~lmv~ll~p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~-~~~~~~~~~~~~~~i~G~Eid~  293 (544)
T 3khk_A          225 GQYYTPKSI---------VTLIVEMLEP-YKGRVYDPAMGSGGFFVSSDKFIEKHAN-VKHYNASEQKKQISVYGQESNP  293 (544)
T ss_dssp             TTTCCCHHH---------HHHHHHHHCC-CSEEEEESSCTTCHHHHHHHHHHHHHHH-HHTSCHHHHGGGEEEEECCCCH
T ss_pred             CeEeCCHHH---------HHHHHHHHhc-CCCeEeCcccCcCcHHHHHHHHHHHhcc-ccccchHHHhhhceEEEEeCCH
Confidence            479999998         4555555543 3349999999999999999999875432 11       1146899999999


Q ss_pred             chHHHHHHh
Q 029895          173 LTGRDTERN  181 (186)
Q Consensus       173 ~L~~~Q~~~  181 (186)
                      ...+..+.+
T Consensus       294 ~~~~lA~~N  302 (544)
T 3khk_A          294 TTWKLAAMN  302 (544)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988875543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.63  E-value=0.0055  Score=46.20  Aligned_cols=55  Identities=15%  Similarity=0.037  Sum_probs=38.2

Q ss_pred             HHHHHHHHHhC-CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          116 GIAEAIMRTAN-LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       116 ~lA~~i~~~~~-~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+...+.+... .....+|+|+|||+|.++..++..     +     ..+++.||+|+.+.+.-++
T Consensus        30 ~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-----~-----~~~v~~vD~~~~~~~~a~~   85 (187)
T 2fhp_A           30 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-----G-----MDKSICIEKNFAALKVIKE   85 (187)
T ss_dssp             HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-----T-----CSEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-----C-----CCEEEEEECCHHHHHHHHH
Confidence            34555555553 234569999999999998876541     1     1368999999988876444

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=96.63  E-value=0.0011  Score=55.34  Aligned_cols=73  Identities=18%  Similarity=0.265  Sum_probs=38.4

Q ss_pred             ccChHHHHHHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCccccc
Q 029895           81 LQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVY  160 (186)
Q Consensus        81 l~~~~~y~~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y  160 (186)
                      |....++....++.|.+.           .|-|-..+..++.+..  +..-+|+|+|||+|.++..+.+.    ..    
T Consensus         4 ms~f~d~F~~~a~~Y~~~-----------Rp~yp~~l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~----~~----   62 (257)
T 4hg2_A            4 MAAFKDHFTPVADAYRAF-----------RPRYPRALFRWLGEVA--PARGDALDCGCGSGQASLGLAEF----FE----   62 (257)
T ss_dssp             ----------------CC-----------CCCCCHHHHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTT----CS----
T ss_pred             hHHHHHHHHHHHHHHHHH-----------CCCcHHHHHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHh----CC----
Confidence            444445555556666533           3334344556666654  33458999999999998766442    22    


Q ss_pred             ccceEEEEecCcchHHH
Q 029895          161 NNMTYISVEIQSLTGRD  177 (186)
Q Consensus       161 ~~l~Y~iVEiSp~L~~~  177 (186)
                         +++-||+|+.+.+.
T Consensus        63 ---~v~gvD~s~~ml~~   76 (257)
T 4hg2_A           63 ---RVHAVDPGEAQIRQ   76 (257)
T ss_dssp             ---EEEEEESCHHHHHT
T ss_pred             ---EEEEEeCcHHhhhh
Confidence               57899999987764

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=96.63  E-value=0.0097  Score=46.59  Aligned_cols=51  Identities=12%  Similarity=0.171  Sum_probs=37.0

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ++..+....  +...+|+|+|||+|.++..+++..    +       +++.||+|+.+.+.-++
T Consensus        30 ~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~----~-------~v~~~D~s~~~~~~a~~   80 (239)
T 3bxo_A           30 IADLVRSRT--PEASSLLDVACGTGTHLEHFTKEF----G-------DTAGLELSEDMLTHARK   80 (239)
T ss_dssp             HHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHH----S-------EEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhC----C-------cEEEEeCCHHHHHHHHH
Confidence            344444333  445699999999999998776653    2       58999999998887544

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=96.63  E-value=0.0026  Score=49.84  Aligned_cols=53  Identities=11%  Similarity=0.103  Sum_probs=37.2

Q ss_pred             HHHHHHHHhC--CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTAN--LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~--~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +++++.+.+.  .+.+.+|+|+|||+|.++..+++.    .       .+++.||+|+.+.+..++
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~----~-------~~~~~~D~s~~~~~~a~~   77 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK----F-------KNTWAVDLSQEMLSEAEN   77 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG----S-------SEEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC----C-------CcEEEEECCHHHHHHHHH
Confidence            3444444442  235579999999999998876543    2       269999999998876544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=96.62  E-value=0.0026  Score=49.55  Aligned_cols=42  Identities=14%  Similarity=0.098  Sum_probs=33.4

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+|||+|.++..+...    .       .+++.||+|+.+.+..++.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~----~-------~~v~~vD~s~~~~~~a~~~   86 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA----G-------RTVYGIEPSREMRMIAKEK   86 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT----T-------CEEEEECSCHHHHHHHHHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC----C-------CeEEEEeCCHHHHHHHHHh
Confidence            4569999999999998877653    2       2699999999988875543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=96.61  E-value=0.0045  Score=47.06  Aligned_cols=49  Identities=14%  Similarity=0.242  Sum_probs=35.2

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +.+.+....+.+|+|+|||+|.++..+...    .       .+++.||+|+...+..++
T Consensus        24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~-------~~v~~vD~s~~~~~~a~~   72 (199)
T 2xvm_A           24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN----G-------YDVDAWDKNAMSIANVER   72 (199)
T ss_dssp             HHHHTTTSCSCEEEEETCTTSHHHHHHHHT----T-------CEEEEEESCHHHHHHHHH
T ss_pred             HHHHhhccCCCeEEEEcCCCCHHHHHHHHC----C-------CeEEEEECCHHHHHHHHH
Confidence            334444334569999999999998766543    2       269999999988776443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=96.60  E-value=0.005  Score=49.82  Aligned_cols=53  Identities=15%  Similarity=0.031  Sum_probs=38.0

Q ss_pred             HHHHHHHhC-CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTAN-LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~~-~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...++.... ...+.+|+|+|||+|.++..+.+.     +     ..+++.||+|+.+.+.-++
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-----~-----~~~v~gvD~s~~~~~~a~~   87 (267)
T 3kkz_A           34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-----V-----TGQVTGLDFLSGFIDIFNR   87 (267)
T ss_dssp             HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-----C-----SSEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-----c-----CCEEEEEeCCHHHHHHHHH
Confidence            333444443 455679999999999999876653     2     2479999999998876443

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.59  E-value=0.0019  Score=57.25  Aligned_cols=60  Identities=17%  Similarity=0.167  Sum_probs=45.9

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCC------CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLS------VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT  174 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~------~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L  174 (186)
                      .|++.+.+         ++.|++..+..      ....|+|||||.|.|...+|+..+   +      -+.+.||+.+.|
T Consensus        33 nFL~d~~i---------~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~---~------~~vvavE~D~~l   94 (353)
T 1i4w_A           33 KYLWNPTV---------YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC---P------RQYSLLEKRSSL   94 (353)
T ss_dssp             CCBCCHHH---------HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC---C------SEEEEECCCHHH
T ss_pred             CccCCHHH---------HHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC---C------CEEEEEecCHHH
Confidence            49998877         66666666422      347899999999999999998542   2      148999999999


Q ss_pred             HHHH
Q 029895          175 GRDT  178 (186)
Q Consensus       175 ~~~Q  178 (186)
                      ...-
T Consensus        95 ~~~L   98 (353)
T 1i4w_A           95 YKFL   98 (353)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8853

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=96.58  E-value=0.0015  Score=51.47  Aligned_cols=52  Identities=12%  Similarity=0.179  Sum_probs=37.3

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +..++....  +...+|+|+|||+|.++..+.+.    .       .+++.||+|+.+.+..++.
T Consensus        43 ~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~----~-------~~v~~vD~s~~~~~~a~~~   94 (242)
T 3l8d_A           43 IIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRT----G-------YKAVGVDISEVMIQKGKER   94 (242)
T ss_dssp             HHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHT----T-------CEEEEEESCHHHHHHHHTT
T ss_pred             HHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHc----C-------CeEEEEECCHHHHHHHHhh
Confidence            334444443  34569999999999998877654    2       2689999999988876554

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.58  E-value=0.01  Score=46.13  Aligned_cols=40  Identities=18%  Similarity=0.159  Sum_probs=31.1

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..+|+|+|||+|.++..+..    ..+       +++.||+|+.+.+.-++
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~----~~~-------~v~~vD~s~~~~~~a~~   78 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLED----YGF-------EVVGVDISEDMIRKARE   78 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHH----TTC-------EEEEEESCHHHHHHHHH
T ss_pred             CCeEEEEeccCCHHHHHHHH----cCC-------EEEEEECCHHHHHHHHH
Confidence            66999999999998865543    233       69999999998876544

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.58  E-value=0.0049  Score=47.72  Aligned_cols=46  Identities=17%  Similarity=0.142  Sum_probs=34.3

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ......+|+|+|||+|.++..+...     +     ..+++.||+|+.+.+.-+++
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~-----~-----~~~v~~vD~~~~~~~~a~~~   93 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLL-----G-----AESVTAFDIDPDAIETAKRN   93 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHT-----T-----BSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHc-----C-----CCEEEEEECCHHHHHHHHHh
Confidence            3445569999999999998766542     2     12689999999998875544

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.56  E-value=0.0038  Score=49.70  Aligned_cols=52  Identities=13%  Similarity=0.183  Sum_probs=38.6

Q ss_pred             HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .++..+....+.+|+|+|||+|.++..+.+.+    |     ..+++.||+|+.+.+.-++
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~----~-----~~~v~~~D~s~~~~~~a~~   75 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRY----G-----VNVITGIDSDDDMLEKAAD   75 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH----C-----TTSEEEEESCHHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC----C-----CCEEEEEECCHHHHHHHHH
Confidence            34444444556799999999999998887764    3     1369999999998876443

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=96.56  E-value=0.0041  Score=50.55  Aligned_cols=50  Identities=24%  Similarity=0.327  Sum_probs=38.7

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      +++.+.+.+....+.+|+|+|||+|.++..+.+      + .    .+++.||+||.+.+.
T Consensus        22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~------~-~----~~v~gvD~s~~~~~~   71 (261)
T 3ege_A           22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALAN------Q-G----LFVYAVEPSIVMRQQ   71 (261)
T ss_dssp             HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT------T-T----CEEEEECSCHHHHHS
T ss_pred             HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh------C-C----CEEEEEeCCHHHHHH
Confidence            566666666666677999999999999988764      2 1    378999999977664

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=96.56  E-value=0.0024  Score=50.82  Aligned_cols=56  Identities=18%  Similarity=0.211  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHh-CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          115 HGIAEAIMRTA-NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       115 ~~lA~~i~~~~-~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.+...+.... ......+|+|+|||+|.++..+++.    .       .+++.||+|+.+.+.-++.
T Consensus        24 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~----~-------~~v~~vD~s~~~~~~a~~~   80 (263)
T 2yqz_A           24 GQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR----G-------YRYIALDADAAMLEVFRQK   80 (263)
T ss_dssp             HHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT----T-------CEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC----C-------CEEEEEECCHHHHHHHHHH
Confidence            44445554422 3345679999999999999877653    2       2689999999988875443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.53  E-value=0.0023  Score=49.33  Aligned_cols=40  Identities=13%  Similarity=0.132  Sum_probs=31.7

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..+|+|+|||+|.++..+.+.    .       .+++.||+|+.+.+..++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~----~-------~~v~gvD~s~~~~~~a~~   81 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL----G-------HQIEGLEPATRLVELARQ   81 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT----T-------CCEEEECCCHHHHHHHHH
T ss_pred             CCeEEEecCCCCHHHHHHHhc----C-------CeEEEEeCCHHHHHHHHH
Confidence            568999999999988766553    2       268999999998876544

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=96.53  E-value=0.0068  Score=50.51  Aligned_cols=61  Identities=8%  Similarity=0.196  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHHHHh--CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          110 KPWYAHGIAEAIMRTA--NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~--~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..++-..+...+++..  ..+.+.+|+|+|||+|.++..++..     +     ..+++.||+|+.+.+..++
T Consensus        13 ~~~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-----~-----~~~v~gvD~s~~~l~~a~~   75 (313)
T 3bgv_A           13 NNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-----R-----INKLVCTDIADVSVKQCQQ   75 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-----T-----CSEEEEEESCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-----C-----CCEEEEEeCCHHHHHHHHH
Confidence            3344444444444443  2235669999999999998776651     1     1379999999998776433

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.53  E-value=0.0044  Score=50.37  Aligned_cols=55  Identities=22%  Similarity=0.349  Sum_probs=40.5

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+++.........+|+|+|||+|.++..+++.+   .|     ..+++.||+|+...+.-+++
T Consensus        89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~-----~~~v~~vD~~~~~~~~a~~~  143 (280)
T 1i9g_A           89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAV---GP-----AGQVISYEQRADHAEHARRN  143 (280)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHH---CT-----TSEEEEECSCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHh---CC-----CCEEEEEeCCHHHHHHHHHH
Confidence            455555554555699999999999999888764   22     23689999999988765443

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=96.52  E-value=0.0028  Score=51.76  Aligned_cols=50  Identities=10%  Similarity=0.177  Sum_probs=37.1

Q ss_pred             HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+++.+......+|+|+|||+|.++..+++      + .    .+++.||+|+.+.+.-++
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~------~-~----~~v~gvD~s~~~~~~a~~   97 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ------S-G----AEVLGTDNAATMIEKARQ   97 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHH------T-T----CEEEEEESCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHh------C-C----CeEEEEECCHHHHHHHHh
Confidence            334444444566999999999999988776      2 1    368999999998886543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=96.52  E-value=0.0052  Score=47.30  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=33.0

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ....+|+|+|||+|.++..++..     +     ..+++.||+|+.+.+.-+++
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-----~-----~~~v~~vD~~~~~~~~a~~~   86 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-----G-----AASVLFVESDQRSAAVIARN   86 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-----T-----CSEEEEEECCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-----C-----CCeEEEEECCHHHHHHHHHH
Confidence            34568999999999998876541     1     12689999999988865443

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.50  E-value=0.0052  Score=48.98  Aligned_cols=55  Identities=22%  Similarity=0.226  Sum_probs=40.6

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+++.........+|+|+|||+|.++..+++.+   .|     ..+++.||+|+...+.-++.
T Consensus        86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~-----~~~v~~~D~~~~~~~~a~~~  140 (258)
T 2pwy_A           86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAV---GE-----KGLVESYEARPHHLAQAERN  140 (258)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHH---CT-----TSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHh---CC-----CCEEEEEeCCHHHHHHHHHH
Confidence            455555555556699999999999998887764   22     23789999999988765443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=96.49  E-value=0.003  Score=50.29  Aligned_cols=42  Identities=14%  Similarity=0.035  Sum_probs=33.1

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+|||+|.++..+.+.    .       .+++.||+|+.+.+.-+++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~----~-------~~v~~vD~s~~~~~~a~~~  119 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT----G-------MRVIAIDIDPVKIALARNN  119 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT----T-------CEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEECccccCHHHHHHHHc----C-------CEEEEEECCHHHHHHHHHH
Confidence            4568999999999999887753    1       3689999999988865443

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=96.48  E-value=0.0097  Score=47.37  Aligned_cols=43  Identities=14%  Similarity=0.007  Sum_probs=33.4

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+.+|+|+|||+|.++..++...          ..+++.||+|+.+.+.-++.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~  121 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL----------FREVDMVDITEDFLVQAKTY  121 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT----------CSEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc----------CCEEEEEeCCHHHHHHHHHH
Confidence            46799999999999988765432          13689999999988875443

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=96.48  E-value=0.0038  Score=46.35  Aligned_cols=41  Identities=15%  Similarity=-0.010  Sum_probs=31.9

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...+|+|+|||+|.++..+...    .+       +++.||+|+.+.+.-++
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~----~~-------~v~~vD~~~~~~~~a~~   81 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASE----GW-------EAVLVEKDPEAVRLLKE   81 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT----TC-------EEEEECCCHHHHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHC----CC-------eEEEEeCCHHHHHHHHH
Confidence            4458999999999998776543    34       38999999998876544

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.47  E-value=0.0052  Score=46.76  Aligned_cols=41  Identities=10%  Similarity=0.047  Sum_probs=32.2

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..-+|+|+|||+|.++..+...    .       .+++.||+||.+.+.-++
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~----~-------~~v~~vD~s~~~l~~a~~   62 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL----S-------KKVYAFDVQEQALGKTSQ   62 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT----S-------SEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh----C-------CEEEEEECCHHHHHHHHH
Confidence            4468999999999999876653    2       268999999998876444

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.47  E-value=0.0067  Score=49.47  Aligned_cols=53  Identities=8%  Similarity=0.231  Sum_probs=38.5

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...+++..+.....+|+|+|||+|.++..++...    +      .+++.||+|+.+.+.-++
T Consensus        53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~------~~v~gvd~s~~~~~~a~~  105 (287)
T 1kpg_A           53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY----D------VNVVGLTLSKNQANHVQQ  105 (287)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH----C------CEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc----C------CEEEEEECCHHHHHHHHH
Confidence            3344444444556799999999999998877543    2      268999999998886544

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.45  E-value=0.0021  Score=50.70  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=34.6

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+.+|+|+|||+|.++..++..+    |    ...+++.||+|+.+.+..+++
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~----~----~~~~v~~vD~~~~~~~~a~~~  113 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALAL----P----ADGRVVTCEVDAQPPELGRPL  113 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTS----C----TTCEEEEEESCSHHHHHHHHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHhC----C----CCCEEEEEECCHHHHHHHHHH
Confidence            34589999999999998876643    2    134799999999988875543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.45  E-value=0.014  Score=48.31  Aligned_cols=73  Identities=15%  Similarity=0.101  Sum_probs=47.4

Q ss_pred             HHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEE
Q 029895           89 KHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISV  168 (186)
Q Consensus        89 ~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iV  168 (186)
                      ..++++|.+....| ...+. .|.+-+    ++..........+|+|+|||+|.++.-+.+    ..       .+.+-|
T Consensus        34 ~~Wd~~y~~~~~~~-~~~~~-~~~l~~----~~~~~~~~~~~~~vLD~GCG~G~~~~~La~----~G-------~~V~gv   96 (252)
T 2gb4_A           34 EDWKEKWVTRHISF-HQEQG-HQLLKK----HLDTFLKGQSGLRVFFPLCGKAIEMKWFAD----RG-------HTVVGV   96 (252)
T ss_dssp             HHHHHHHHHTCCTT-CCTTC-CHHHHH----HHHHHHTTCCSCEEEETTCTTCTHHHHHHH----TT-------CEEEEE
T ss_pred             HHHHHHHhcCCCCc-ccCCC-CHHHHH----HHHHhccCCCCCeEEEeCCCCcHHHHHHHH----CC-------CeEEEE
Confidence            35677887765444 23344 565433    333333333556999999999999865443    22       268999


Q ss_pred             ecCcchHHHH
Q 029895          169 EIQSLTGRDT  178 (186)
Q Consensus       169 EiSp~L~~~Q  178 (186)
                      |+|+.+.+.-
T Consensus        97 D~S~~~i~~a  106 (252)
T 2gb4_A           97 EISEIGIREF  106 (252)
T ss_dssp             CSCHHHHHHH
T ss_pred             ECCHHHHHHH
Confidence            9999998864

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=96.42  E-value=0.0065  Score=47.17  Aligned_cols=43  Identities=19%  Similarity=0.260  Sum_probs=33.1

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +...+|+|+|||+|.++..+++.    .       .+++.||+|+.+.+.-++.
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~----~-------~~v~~vD~s~~~~~~a~~~   84 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAA----G-------FDVDATDGSPELAAEASRR   84 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHT----T-------CEEEEEESCHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCHHHHHHHHc----C-------CeEEEECCCHHHHHHHHHh
Confidence            34569999999999998777653    2       2689999999888765443

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.41  E-value=0.0023  Score=51.30  Aligned_cols=60  Identities=13%  Similarity=0.133  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +|.-+..+...+ .   ...+.+|+|+|||+|.++..++..+    |    ...+++.||+|+.+.+.-++.
T Consensus        45 ~~~~~~~l~~l~-~---~~~~~~VLdiG~G~G~~~~~la~~~----~----~~~~v~~vD~~~~~~~~a~~~  104 (239)
T 2hnk_A           45 SPEEGQFLNILT-K---ISGAKRIIEIGTFTGYSSLCFASAL----P----EDGKILCCDVSEEWTNVARKY  104 (239)
T ss_dssp             CHHHHHHHHHHH-H---HHTCSEEEEECCTTCHHHHHHHHHS----C----TTCEEEEEESCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH-H---hhCcCEEEEEeCCCCHHHHHHHHhC----C----CCCEEEEEECCHHHHHHHHHH
Confidence            555555444433 1   1234589999999999999887653    2    124799999999988875443

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=96.41  E-value=0.0056  Score=48.49  Aligned_cols=75  Identities=12%  Similarity=0.156  Sum_probs=45.9

Q ss_pred             HHHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEE
Q 029895           88 MKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYIS  167 (186)
Q Consensus        88 ~~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~i  167 (186)
                      ...+.+.|.+....|.... . .+.+    ..++.. ... .+.+|+|+|||+|.++..+..      +     ..+++.
T Consensus        33 ~~~w~~~~~~~~~~~~~~~-~-~~~l----~~~~~~-~~~-~~~~vLDiGcG~G~~~~~l~~------~-----~~~v~g   93 (235)
T 3lcc_A           33 EGGWEKCWEEEITPWDQGR-A-TPLI----VHLVDT-SSL-PLGRALVPGCGGGHDVVAMAS------P-----ERFVVG   93 (235)
T ss_dssp             HHHHHHHHHTTCCTTCCSS-C-CHHH----HHHHHT-TCS-CCEEEEEETCTTCHHHHHHCB------T-----TEEEEE
T ss_pred             HHHHHHHHhcCCCCcccCC-C-CHHH----HHHHHh-cCC-CCCCEEEeCCCCCHHHHHHHh------C-----CCeEEE
Confidence            3456677776655554322 2 3333    222222 122 234999999999999886632      1     236999


Q ss_pred             EecCcchHHHHHHh
Q 029895          168 VEIQSLTGRDTERN  181 (186)
Q Consensus       168 VEiSp~L~~~Q~~~  181 (186)
                      ||+|+...+.-++.
T Consensus        94 vD~s~~~~~~a~~~  107 (235)
T 3lcc_A           94 LDISESALAKANET  107 (235)
T ss_dssp             ECSCHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHH
Confidence            99999988765443

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.40  E-value=0.0072  Score=50.24  Aligned_cols=52  Identities=15%  Similarity=0.294  Sum_probs=38.2

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..+++..+.....+|+|+|||+|.++..++...   .       .+++.||+|+...+.-++
T Consensus        80 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~---~-------~~v~gvD~s~~~~~~a~~  131 (318)
T 2fk8_A           80 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF---D-------VNVIGLTLSKNQHARCEQ  131 (318)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH---C-------CEEEEEESCHHHHHHHHH
T ss_pred             HHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC---C-------CEEEEEECCHHHHHHHHH
Confidence            344444444556799999999999998877653   2       269999999998876443

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=96.39  E-value=0.0053  Score=49.53  Aligned_cols=57  Identities=11%  Similarity=0.029  Sum_probs=39.5

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +...++..+....+.+|+|+|||+|.++..++..++  .+     ..+++.||+|+...+.-++
T Consensus        39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~--~~-----~~~v~gvDis~~~l~~A~~   95 (250)
T 1o9g_A           39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHR--RS-----LRQVIASDVDPAPLELAAK   95 (250)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTG--GG-----EEEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhc--cC-----CCeEEEEECCHHHHHHHHH
Confidence            334444444333567999999999999888776531  12     2478999999998876543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.39  E-value=0.0057  Score=48.73  Aligned_cols=53  Identities=17%  Similarity=0.151  Sum_probs=38.6

Q ss_pred             HHHHHHHh-CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTA-NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~-~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...++... ..+...+|+|+|||+|.++..+.+..    +      .+++.||+|+.+.+.-++
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~----~------~~v~~vD~s~~~~~~a~~   87 (257)
T 3f4k_A           34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYV----K------GQITGIDLFPDFIEIFNE   87 (257)
T ss_dssp             HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHC----C------SEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhC----C------CeEEEEECCHHHHHHHHH
Confidence            44444444 44455699999999999998876653    3      279999999998886444

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.39  E-value=0.0084  Score=50.01  Aligned_cols=54  Identities=15%  Similarity=0.090  Sum_probs=39.4

Q ss_pred             HHHHHHHHhC-CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTAN-LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~-~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .++++++.+. .....+|+|+|||+|.++..+.+..   .       .+++.||+|+...+.-++
T Consensus       104 ~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~---~-------~~v~gvD~s~~~~~~a~~  158 (312)
T 3vc1_A          104 QAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF---G-------SRVEGVTLSAAQADFGNR  158 (312)
T ss_dssp             HHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH---C-------CEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc---C-------CEEEEEeCCHHHHHHHHH
Confidence            3344555544 4556799999999999998887653   2       268999999998876443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=96.37  E-value=0.0088  Score=48.22  Aligned_cols=45  Identities=24%  Similarity=0.292  Sum_probs=33.7

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL  173 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~  173 (186)
                      +++.+......+|+|+|||+|.++..+.+..   .|     ..+++.||+|+.
T Consensus        35 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---g~-----~~~v~gvD~s~~   79 (275)
T 3bkx_A           35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQV---GS-----SGHVTGIDIASP   79 (275)
T ss_dssp             HHHHHTCCTTCEEEEESCTTSHHHHHHHHHH---CT-----TCEEEEECSSCT
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHh---CC-----CCEEEEEECCcc
Confidence            3444455566799999999999998877654   23     247999999995

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.36  E-value=0.012  Score=47.62  Aligned_cols=60  Identities=12%  Similarity=0.015  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +|.-|+.+...+ ..   ..+.+|+|+|||+|..+..++..+    |    ...+++.||+|+...+..+++
T Consensus        55 ~~~~~~~l~~l~-~~---~~~~~VLeiG~G~G~~~~~la~~~----~----~~~~v~~iD~~~~~~~~a~~~  114 (237)
T 3c3y_A           55 SPLAGQLMSFVL-KL---VNAKKTIEVGVFTGYSLLLTALSI----P----DDGKITAIDFDREAYEIGLPF  114 (237)
T ss_dssp             CHHHHHHHHHHH-HH---TTCCEEEEECCTTSHHHHHHHHHS----C----TTCEEEEEESCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH-Hh---hCCCEEEEeCCCCCHHHHHHHHhC----C----CCCEEEEEECCHHHHHHHHHH
Confidence            565555554332 22   234589999999999999888764    2    124799999999988875544

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=96.35  E-value=0.0064  Score=49.18  Aligned_cols=55  Identities=15%  Similarity=0.206  Sum_probs=39.4

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ++..+......+...+|+|+|||+|.++..+...    .|     ..+++.||+|+.+.+.-++
T Consensus        25 l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~----~~-----~~~v~~vD~s~~~~~~a~~   79 (276)
T 3mgg_A           25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKN----NP-----DAEITSIDISPESLEKARE   79 (276)
T ss_dssp             HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHH----CT-----TSEEEEEESCHHHHHHHHH
T ss_pred             HHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHh----CC-----CCEEEEEECCHHHHHHHHH
Confidence            4444444334456679999999999998877654    33     2479999999998876544

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.34  E-value=0.0086  Score=47.64  Aligned_cols=43  Identities=9%  Similarity=0.183  Sum_probs=33.0

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...+.+|+|+|||+|.++..++..    .       .+++.||+|+.+.+.-++
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~----~-------~~v~gvD~s~~~l~~a~~   81 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAER----G-------YEVVGLDLHEEMLRVARR   81 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHT----T-------CEEEEEESCHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHC----C-------CeEEEEECCHHHHHHHHH
Confidence            344569999999999998876542    2       268999999998876443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.33  E-value=0.01  Score=49.08  Aligned_cols=50  Identities=14%  Similarity=0.233  Sum_probs=37.3

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +++..+.....+|+|+|||+|.++..+....    +      .+++.||+|+...+.-++
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~----~------~~v~gvD~s~~~~~~a~~  113 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY----D------VNVIGLTLSENQYAHDKA  113 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTTSHHHHHHHHHH----C------CEEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeccCcHHHHHHHHhC----C------CEEEEEECCHHHHHHHHH
Confidence            3444444556699999999999998877653    2      368999999998876444

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=96.32  E-value=0.0098  Score=47.08  Aligned_cols=51  Identities=22%  Similarity=0.206  Sum_probs=39.0

Q ss_pred             HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ++....+.....+|+|+|||+|.++..++..    .       .+++.||+|+...+.-+++
T Consensus        82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~----~-------~~v~~vD~~~~~~~~a~~~  132 (248)
T 2yvl_A           82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV----A-------GEVWTFEAVEEFYKTAQKN  132 (248)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH----S-------SEEEEECSCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh----C-------CEEEEEecCHHHHHHHHHH
Confidence            5666655555569999999999999988775    2       2689999999988765443

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=96.31  E-value=0.016  Score=55.19  Aligned_cols=85  Identities=12%  Similarity=0.220  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHhhhcC------------CccccccccchHH---------------------HHHHHHHHHHHHhC----
Q 029895           84 RKAYMKHVDKIYKQSE------------ISWFTPVELFKPW---------------------YAHGIAEAIMRTAN----  126 (186)
Q Consensus        84 ~~~y~~~~~~~y~~~~------------~dF~Ts~eifsp~---------------------Fg~~lA~~i~~~~~----  126 (186)
                      ...|.+++..+++..+            .|++=+| + +|+                     |-++|.+.+.....    
T Consensus       277 ~~~y~~yl~~l~~~~~~~~~~e~~~~~y~D~Lq~P-L-QPl~dnL~s~tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~  354 (637)
T 4gqb_A          277 FCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP-L-QPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEK  354 (637)
T ss_dssp             STHHHHHHHHHHHSSCCCCHHHHHSTTCBTCCBEE-C-CTTTSCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred             hHHHHHHHHHHHHhCCCCCHHHHhcccccccccCc-C-cchhhhhhhhhhhhhcCChhhHHHHHHHHHHHHHHhhhhccc
Confidence            3456666666666543            3677666 5 564                     88999999887652    


Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      .....+|+++|||+|-|..-.+++.++..     .+++.+.||.||. +.
T Consensus       355 ~~~~~vVldVGaGrGpLv~~al~A~a~~~-----~~vkVyAVEknp~-A~  398 (637)
T 4gqb_A          355 DTNVQVLMVLGAGRGPLVNASLRAAKQAD-----RRIKLYAVEKNPN-AV  398 (637)
T ss_dssp             TTCEEEEEEESCTTSHHHHHHHHHHHHTT-----CEEEEEEEESCHH-HH
T ss_pred             cCCCcEEEEECCCCcHHHHHHHHHHHhcC-----CCcEEEEEECCHH-HH
Confidence            23346899999999999988888877643     3467889999984 44

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.30  E-value=0.0061  Score=50.03  Aligned_cols=55  Identities=16%  Similarity=0.140  Sum_probs=40.4

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+++.........+|+|+|||+|.++..+++.+   .|     ..+++.||+|+...+.-+++
T Consensus       102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~---~~-----~~~v~~vD~s~~~~~~a~~~  156 (277)
T 1o54_A          102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAV---GS-----SGKVFAYEKREEFAKLAESN  156 (277)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHT---TT-----TCEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHh---CC-----CcEEEEEECCHHHHHHHHHH
Confidence            455555555556699999999999998877653   22     24799999999988765443

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.30  E-value=0.003  Score=58.70  Aligned_cols=67  Identities=19%  Similarity=0.247  Sum_probs=49.3

Q ss_pred             CccccccccchHHHHHHHHHHHHHHhC----CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895          100 ISWFTPVELFKPWYAHGIAEAIMRTAN----LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG  175 (186)
Q Consensus       100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~----~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~  175 (186)
                      ..||||.++         ++.|++...    +....+|+|.+||+|.+...+++++++.      ...+++-+|+++...
T Consensus       197 G~fyTP~~V---------v~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~------~~~~i~G~Eid~~~~  261 (542)
T 3lkd_A          197 GEFYTPQPV---------AKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQP------QTVVYFGQELNTSTY  261 (542)
T ss_dssp             SSCCCCHHH---------HHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCT------TTCEEEEEESCHHHH
T ss_pred             CeecccHHH---------HHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhc------cCceEEEEECcHHHH
Confidence            479999988         333444332    3345699999999999999998887532      145799999999988


Q ss_pred             HHHHHh
Q 029895          176 RDTERN  181 (186)
Q Consensus       176 ~~Q~~~  181 (186)
                      +..+.+
T Consensus       262 ~lA~~N  267 (542)
T 3lkd_A          262 NLARMN  267 (542)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.29  E-value=0.0086  Score=47.12  Aligned_cols=46  Identities=17%  Similarity=0.178  Sum_probs=35.2

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .....+|+|+|||+|.++..+.+.+   .+     ..+++.||+|+.+.+.-++
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~---~~-----~~~v~~vD~s~~~~~~a~~  120 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMV---GC-----TGKVIGIDHIKELVDDSVN  120 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHH---CT-----TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHh---CC-----CcEEEEEeCCHHHHHHHHH
Confidence            3445699999999999999887654   22     2379999999998876443

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.28  E-value=0.0024  Score=50.19  Aligned_cols=60  Identities=18%  Similarity=0.163  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ++.-++.+...+. ..   .+.+|+|+|||+|..+..++..+    |    ...+++.||+|+...+.-++.
T Consensus        49 ~~~~~~~l~~l~~-~~---~~~~vLdiG~G~G~~~~~la~~~----~----~~~~v~~vD~~~~~~~~a~~~  108 (225)
T 3tr6_A           49 APEQAQLLALLVK-LM---QAKKVIDIGTFTGYSAIAMGLAL----P----KDGTLITCDVDEKSTALAKEY  108 (225)
T ss_dssp             CHHHHHHHHHHHH-HH---TCSEEEEECCTTSHHHHHHHTTC----C----TTCEEEEEESCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH-hh---CCCEEEEeCCcchHHHHHHHHhC----C----CCCEEEEEeCCHHHHHHHHHH
Confidence            5555555544332 21   34589999999999998776643    2    135799999999887765443

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.28  E-value=0.0049  Score=49.56  Aligned_cols=49  Identities=12%  Similarity=0.255  Sum_probs=35.5

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +++........+|+|+|||+|.++..+.+.    .+       +++.||+|+.+.+.-++
T Consensus        29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~-------~v~gvD~s~~~l~~a~~   77 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATGGGHVANAFAPF----VK-------KVVAFDLTEDILKVARA   77 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGG----SS-------EEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEeCCCCHHHHHHHHh----CC-------EEEEEeCCHHHHHHHHH
Confidence            333444445679999999999988766542    22       69999999998876433

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.27  E-value=0.004  Score=47.87  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=34.8

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+|||+|.++..+++.+   .|     ..+++.||+|+.+.+.-+++
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~---~~-----~~~v~~vD~s~~~~~~a~~~   66 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLV---GE-----NGRVFGFDIQDKAIANTTKK   66 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHH---CT-----TCEEEEECSCHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHh---CC-----CCEEEEEECCHHHHHHHHHH
Confidence            34589999999999999888765   22     13799999999988765443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=96.27  E-value=0.0089  Score=49.13  Aligned_cols=58  Identities=21%  Similarity=0.315  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+.+..+++.... ..+.+|+|+|||+|.++..++..+    |     ..+++.||+|+...+.-+++
T Consensus        95 te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~----~-----~~~v~~vD~s~~~l~~a~~n  152 (276)
T 2b3t_A           95 TECLVEQALARLP-EQPCRILDLGTGTGAIALALASER----P-----DCEIIAVDRMPDAVSLAQRN  152 (276)
T ss_dssp             HHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHC----T-----TSEEEEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhC----C-----CCEEEEEECCHHHHHHHHHH
Confidence            4666677776664 345699999999999998776542    3     24799999999988765443

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=96.27  E-value=0.0063  Score=50.25  Aligned_cols=52  Identities=12%  Similarity=0.116  Sum_probs=37.0

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .++.++..+.... .+|+|+|||+|.++..+++.    .       .+++.||+|+.+.+.-++
T Consensus        71 ~~~~~~~~~~~~~-~~vLDlGcG~G~~~~~l~~~----~-------~~v~gvD~s~~~~~~a~~  122 (299)
T 3g2m_A           71 EAREFATRTGPVS-GPVLELAAGMGRLTFPFLDL----G-------WEVTALELSTSVLAAFRK  122 (299)
T ss_dssp             HHHHHHHHHCCCC-SCEEEETCTTTTTHHHHHTT----T-------CCEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhhCCCC-CcEEEEeccCCHHHHHHHHc----C-------CeEEEEECCHHHHHHHHH
Confidence            3444555554333 38999999999998877653    2       258999999998886443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.27  E-value=0.0039  Score=49.54  Aligned_cols=59  Identities=19%  Similarity=0.276  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +|.-++.+...+..    ..+.+|+|+|||+|.++..++..+    |     ..+++.||+|+.+.+.-++.
T Consensus        39 ~~~~~~~l~~~~~~----~~~~~vLdiG~G~G~~~~~la~~~----~-----~~~v~~vD~~~~~~~~a~~~   97 (233)
T 2gpy_A           39 DLLGMESLLHLLKM----AAPARILEIGTAIGYSAIRMAQAL----P-----EATIVSIERDERRYEEAHKH   97 (233)
T ss_dssp             CHHHHHHHHHHHHH----HCCSEEEEECCTTSHHHHHHHHHC----T-----TCEEEEECCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhc----cCCCEEEEecCCCcHHHHHHHHHC----C-----CCEEEEEECCHHHHHHHHHH
Confidence            44445544443321    234589999999999998777653    3     24799999999988865443

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=96.26  E-value=0.0068  Score=48.46  Aligned_cols=52  Identities=19%  Similarity=0.300  Sum_probs=38.8

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...++...+.....+|+|+|||+|.++..+.+.    .+       +++.||+|+.+.+..++
T Consensus        10 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~~-------~v~~vD~s~~~~~~a~~   61 (239)
T 1xxl_A           10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY----VQ-------ECIGVDATKEMVEVASS   61 (239)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG----SS-------EEEEEESCHHHHHHHHH
T ss_pred             cchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh----CC-------EEEEEECCHHHHHHHHH
Confidence            445556666667789999999999998766432    22       68999999998876443

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.26  E-value=0.0058  Score=47.50  Aligned_cols=42  Identities=24%  Similarity=0.263  Sum_probs=33.3

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+|||+|.++..++..    .       .+++.||+|+.+.+.-++.
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~----~-------~~v~~vD~s~~~~~~a~~~   71 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASK----G-------YSVTGIDINSEAIRLAETA   71 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT----T-------CEEEEEESCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhC----C-------CeEEEEECCHHHHHHHHHH
Confidence            4569999999999998877654    2       2699999999988875543

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.26  E-value=0.0062  Score=56.21  Aligned_cols=69  Identities=12%  Similarity=0.169  Sum_probs=53.8

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccc-----cccceEEEEecCcchH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERV-----YNNMTYISVEIQSLTG  175 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~-----y~~l~Y~iVEiSp~L~  175 (186)
                      .||||.+|         ++.|+++..+...-+|+|-.||+|.|.....++++++.. ..     .....++-+|+++...
T Consensus       198 qfyTP~~V---------v~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~-~~~~~~~~~~~~i~G~E~~~~~~  267 (530)
T 3ufb_A          198 EFYTPRPV---------VRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCK-TVEDREVLQESSIFGGEAKSLPY  267 (530)
T ss_dssp             CCCCCHHH---------HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCC-SHHHHHHHHTCCEEEECCSHHHH
T ss_pred             eECCcHHH---------HHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhcc-chhHHHHHhhhhhhhhhccHHHH
Confidence            69999988         566666666555568999999999999999999987653 22     2345789999999877


Q ss_pred             HHHH
Q 029895          176 RDTE  179 (186)
Q Consensus       176 ~~Q~  179 (186)
                      ...+
T Consensus       268 ~la~  271 (530)
T 3ufb_A          268 LLVQ  271 (530)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6643

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.26  E-value=0.0091  Score=46.89  Aligned_cols=51  Identities=10%  Similarity=0.086  Sum_probs=36.5

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +..........+|+|+|||+|.++..+++.    ..      .+++.||+|+.+.+..++.
T Consensus        35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~------~~v~~vD~s~~~~~~a~~~   85 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEH----GA------SYVLGLDLSEKMLARARAA   85 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTTCHHHHHHHHT----TC------SEEEEEESCHHHHHHHHHT
T ss_pred             HHHhccccCCCEEEEEcCcCCHHHHHHHHC----CC------CeEEEEcCCHHHHHHHHHh
Confidence            344444445679999999999998766543    21      1699999999988875544

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=96.24  E-value=0.0075  Score=50.20  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEec-CcchHHHHHHhc
Q 029895          114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEI-QSLTGRDTERNC  182 (186)
Q Consensus       114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEi-Sp~L~~~Q~~~~  182 (186)
                      ++.+++++..........+|+|+|||+|.++.-+...    ..      .+++.||+ |+.+.+.-++++
T Consensus        64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~----~~------~~v~~~D~s~~~~~~~a~~n~  123 (281)
T 3bzb_A           64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA----GA------DQVVATDYPDPEILNSLESNI  123 (281)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT----TC------SEEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc----CC------CEEEEEeCCCHHHHHHHHHHH
Confidence            5667777777654344569999999999998644331    11      26899999 888877654443

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.22  E-value=0.0024  Score=50.21  Aligned_cols=59  Identities=12%  Similarity=0.035  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +|.-++.+...+..    ..+.+|+|+|||+|..+..++..+    |    ...+++.||+|+...+.-++
T Consensus        43 ~~~~~~~l~~l~~~----~~~~~vLdiG~G~G~~~~~la~~~----~----~~~~v~~vD~~~~~~~~a~~  101 (223)
T 3duw_A           43 SPTQGKFLQLLVQI----QGARNILEIGTLGGYSTIWLARGL----S----SGGRVVTLEASEKHADIARS  101 (223)
T ss_dssp             CHHHHHHHHHHHHH----HTCSEEEEECCTTSHHHHHHHTTC----C----SSCEEEEEESCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh----hCCCEEEEecCCccHHHHHHHHhC----C----CCCEEEEEECCHHHHHHHHH
Confidence            56666655543322    234689999999999998776543    2    13479999999988876443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.22  E-value=0.0096  Score=50.31  Aligned_cols=56  Identities=23%  Similarity=0.288  Sum_probs=40.7

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +...+++........+|+|+|||+|.++..+.....        ...+++.||+|+.+.+.-++
T Consensus        63 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~~~~a~~  118 (317)
T 1dl5_A           63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVG--------EKGLVVSVEYSRKICEIAKR  118 (317)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC--------TTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcC--------CCCEEEEEECCHHHHHHHHH
Confidence            344555555555566999999999999988776531        12468999999998886544

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.22  E-value=0.0072  Score=48.89  Aligned_cols=63  Identities=13%  Similarity=0.065  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +|.-|+.+... ....+.....+|+|+|||+|..+..++..+.   |     ..+++.||+|+.+.+.-+++
T Consensus        38 ~~~~~~~l~~l-~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~---~-----~~~v~~vD~~~~~~~~a~~~  100 (221)
T 3dr5_A           38 DEMTGQLLTTL-AATTNGNGSTGAIAITPAAGLVGLYILNGLA---D-----NTTLTCIDPESEHQRQAKAL  100 (221)
T ss_dssp             CHHHHHHHHHH-HHHSCCTTCCEEEEESTTHHHHHHHHHHHSC---T-----TSEEEEECSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-HHhhCCCCCCCEEEEcCCchHHHHHHHHhCC---C-----CCEEEEEECCHHHHHHHHHH
Confidence            66666655433 3333333345899999999999998877642   1     24799999999988765443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=96.22  E-value=0.013  Score=50.38  Aligned_cols=50  Identities=10%  Similarity=0.109  Sum_probs=33.7

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ..+.+.+........+|+|+|||+|.++..+.+.     +     ..+++.||+|+ +.+.
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-----g-----~~~v~gvD~s~-~~~~  101 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-----G-----AKKVLGVDQSE-ILYQ  101 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-----T-----CSEEEEEESST-HHHH
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHc-----C-----CCEEEEEChHH-HHHH
Confidence            3344444444445569999999999998765542     1     13689999998 5554

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=96.21  E-value=0.0059  Score=47.67  Aligned_cols=51  Identities=14%  Similarity=0.152  Sum_probs=35.5

Q ss_pred             HHHHHHh-CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          119 EAIMRTA-NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       119 ~~i~~~~-~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +++.+.+ ....+.+|+|+|||+|.++..+.+    ..+       +++.||+|+.+.+.-++
T Consensus        31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~----~~~-------~v~gvD~s~~~~~~a~~   82 (250)
T 2p7i_A           31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQE----HFN-------DITCVEASEEAISHAQG   82 (250)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTT----TCS-------CEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHH----hCC-------cEEEEeCCHHHHHHHHH
Confidence            4444444 223456899999999999876654    233       58999999998876443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=96.18  E-value=0.0053  Score=53.97  Aligned_cols=71  Identities=14%  Similarity=0.155  Sum_probs=50.6

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+.+.+.+|++---..-++.+++.+....+.+|+|+|||+|.++..+...    .|     ..+++.||+|+.+.+.-++
T Consensus       194 ~~~~~pg~Fs~~~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~----~p-----~~~V~gvD~s~~al~~Ar~  264 (375)
T 4dcm_A          194 TIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDK----NP-----QAKVVFVDESPMAVASSRL  264 (375)
T ss_dssp             EEEECTTCTTCSSCCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHH----CT-----TCEEEEEESCHHHHHHHHH
T ss_pred             EEEeCCCcccCCcccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHH----CC-----CCEEEEEECcHHHHHHHHH
Confidence            47777777776333344556666664444579999999999999887664    33     2479999999998876544

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=96.16  E-value=0.0082  Score=46.17  Aligned_cols=43  Identities=14%  Similarity=0.244  Sum_probs=31.7

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +.+.+|+|+|||+|.++..++.   +..       .+++.||+|+.+.+..++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~---~~~-------~~v~~vD~s~~~~~~a~~   64 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFV---EDG-------YKTYGIEISDLQLKKAEN   64 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHH---HTT-------CEEEEEECCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHH---hCC-------CEEEEEECCHHHHHHHHH
Confidence            3456999999999998655552   211       379999999998876544

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=96.15  E-value=0.0078  Score=49.03  Aligned_cols=42  Identities=17%  Similarity=0.150  Sum_probs=33.1

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      +-+|+|||||+|..+.-+.+.++...|     ..+.+.||+|+.+.+
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~-----~~~V~gvD~s~~~l~  123 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGI-----DCQVIGIDRDLSRCQ  123 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTC-----CCEEEEEESCCTTCC
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCC-----CCEEEEEeCChHHHH
Confidence            358999999999999988877654333     357999999998754

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.14  E-value=0.0056  Score=50.25  Aligned_cols=60  Identities=12%  Similarity=-0.004  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +|.-|+.+...+ ...   .+.+|+|+|||+|..+..++..+    | +   ..+++.||+|+.+.+..+++
T Consensus        64 ~~~~~~ll~~l~-~~~---~~~~VLeiG~G~G~~~~~la~~~----~-~---~~~v~~iD~s~~~~~~a~~~  123 (247)
T 1sui_A           64 SADEGQFLSMLL-KLI---NAKNTMEIGVYTGYSLLATALAI----P-E---DGKILAMDINKENYELGLPV  123 (247)
T ss_dssp             CHHHHHHHHHHH-HHT---TCCEEEEECCGGGHHHHHHHHHS----C-T---TCEEEEEESCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHH-Hhh---CcCEEEEeCCCcCHHHHHHHHhC----C-C---CCEEEEEECCHHHHHHHHHH
Confidence            555555554322 222   34589999999999999887764    2 1   24799999999988875543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=96.14  E-value=0.013  Score=46.74  Aligned_cols=49  Identities=8%  Similarity=0.133  Sum_probs=36.1

Q ss_pred             HHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          123 RTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       123 ~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..+......+|+|+|||+|.++..+++.    .+ .     +++.||+|+.+.+..++.
T Consensus        38 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~----~~-~-----~v~~vD~s~~~~~~a~~~   86 (253)
T 3g5l_A           38 KMLPDFNQKTVLDLGCGFGWHCIYAAEH----GA-K-----KVLGIDLSERMLTEAKRK   86 (253)
T ss_dssp             TTCCCCTTCEEEEETCTTCHHHHHHHHT----TC-S-----EEEEEESCHHHHHHHHHH
T ss_pred             HhhhccCCCEEEEECCCCCHHHHHHHHc----CC-C-----EEEEEECCHHHHHHHHHh
Confidence            3334445679999999999988877553    22 1     689999999988875543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.12  E-value=0.013  Score=45.34  Aligned_cols=43  Identities=23%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+|||+|.++..+.+    . +     ..+++.||+|+.+.+.-+++
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~----~-~-----~~~v~~vD~s~~~~~~a~~~  102 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHK----L-G-----AKSVLATDISDESMTAAEEN  102 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHH----T-T-----CSEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHH----C-C-----CCEEEEEECCHHHHHHHHHH
Confidence            456999999999998877543    1 2     13789999999988765443

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.10  E-value=0.0086  Score=44.91  Aligned_cols=42  Identities=12%  Similarity=0.171  Sum_probs=32.6

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +...+|+|+|||+|.++..+...    .       .+++.||+|+.+.+.-++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~----~-------~~v~~~D~~~~~~~~a~~   86 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ----G-------HDVLGTDLDPILIDYAKQ   86 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT----T-------CEEEEEESCHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC----C-------CcEEEEcCCHHHHHHHHH
Confidence            34569999999999998876653    2       269999999988776544

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=96.08  E-value=0.0091  Score=46.86  Aligned_cols=50  Identities=16%  Similarity=0.178  Sum_probs=35.9

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +.+++.....+  ..+|+|+|||+|.++..++..            .+++.||+|+.+.+.-++
T Consensus        23 ~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~------------~~v~~vD~s~~~~~~a~~   72 (243)
T 3d2l_A           23 WVAWVLEQVEP--GKRIADIGCGTGTATLLLADH------------YEVTGVDLSEEMLEIAQE   72 (243)
T ss_dssp             HHHHHHHHSCT--TCEEEEESCTTCHHHHHHTTT------------SEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHcCC--CCeEEEecCCCCHHHHHHhhC------------CeEEEEECCHHHHHHHHH
Confidence            44455555533  368999999999988765432            368999999998876544

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.07  E-value=0.0059  Score=48.76  Aligned_cols=45  Identities=20%  Similarity=0.175  Sum_probs=33.8

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .....+|+|+|||+|+++..+++...         ..+++.||+|+...+.-++
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~---------~~~v~gvD~s~~~~~~a~~  116 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIAD---------KGIVYAIEYAPRIMRELLD  116 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT---------TSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcC---------CcEEEEEECCHHHHHHHHH
Confidence            34456899999999999988876531         1368999999987765433

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=96.06  E-value=0.0039  Score=48.79  Aligned_cols=59  Identities=12%  Similarity=0.030  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ++.-+..+...+ ...   .+.+|+|+|||+|..+..++..+    | .   ..+++.||+|+...+..++
T Consensus        41 ~~~~~~~l~~l~-~~~---~~~~vLdiG~G~G~~~~~la~~~----~-~---~~~v~~vD~~~~~~~~a~~   99 (210)
T 3c3p_A           41 DRQTGRLLYLLA-RIK---QPQLVVVPGDGLGCASWWFARAI----S-I---SSRVVMIDPDRDNVEHARR   99 (210)
T ss_dssp             CHHHHHHHHHHH-HHH---CCSEEEEESCGGGHHHHHHHTTS----C-T---TCEEEEEESCHHHHHHHHH
T ss_pred             CHHHHHHHHHHH-Hhh---CCCEEEEEcCCccHHHHHHHHhC----C-C---CCEEEEEECCHHHHHHHHH
Confidence            555555444322 222   34589999999999998776643    2 1   3479999999998876544

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.05  E-value=0.0089  Score=50.29  Aligned_cols=57  Identities=16%  Similarity=0.229  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.+..+++.........+|+|+|||+|.++..+...     |     ..+++.||+|+...+.-+++
T Consensus       109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-----~-----~~~v~~vDis~~al~~A~~n  165 (284)
T 1nv8_A          109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-----S-----DAIVFATDVSSKAVEIARKN  165 (284)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-----S-----SCEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-----C-----CCEEEEEECCHHHHHHHHHH
Confidence            445555555442223458999999999999887654     3     13689999999988875544

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.03  E-value=0.003  Score=51.52  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ++.-++.|...+. .   ..+.+|+|+|||+|..+..++..+    |    ...+++.||+|+...+.-+++
T Consensus        48 ~~~~~~~l~~l~~-~---~~~~~VLdiG~G~G~~~~~la~~~----~----~~~~v~~vD~s~~~~~~a~~~  107 (248)
T 3tfw_A           48 AANQGQFLALLVR-L---TQAKRILEIGTLGGYSTIWMAREL----P----ADGQLLTLEADAHHAQVAREN  107 (248)
T ss_dssp             CHHHHHHHHHHHH-H---HTCSEEEEECCTTSHHHHHHHTTS----C----TTCEEEEEECCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh-h---cCCCEEEEecCCchHHHHHHHHhC----C----CCCEEEEEECCHHHHHHHHHH
Confidence            5666665554332 1   234699999999999998776543    2    135799999999888765443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.03  E-value=0.028  Score=51.58  Aligned_cols=86  Identities=14%  Similarity=0.192  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHhhhcCC--ccccccccchH-HHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcc
Q 029895           84 RKAYMKHVDKIYKQSEI--SWFTPVELFKP-WYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPE  157 (186)
Q Consensus        84 ~~~y~~~~~~~y~~~~~--dF~Ts~eifsp-~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~  157 (186)
                      ..-.+..+++.|...-+  +-+.-.+-|++ .||++....+..++   +....-+|+|+|||+|.++..+...    .+ 
T Consensus       122 ~~~~~~Il~~~Y~r~V~~~~~L~~Ye~Fs~~vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~----~g-  196 (438)
T 3uwp_A          122 TGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAA----TN-  196 (438)
T ss_dssp             HHHHHHHHHHHHHHHCSCGGGSCCCSSSCGGGGGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHH----CC-
T ss_pred             HHHHHHHHHHHHhhcCCCHHHhcCcccCCCcccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH----CC-
Confidence            45568899999985542  34444555555 57777766655544   5555669999999999999877543    22 


Q ss_pred             cccccceEEEEecCcchHHHH
Q 029895          158 RVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       158 ~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                          ..+.+-||+|+.+.+..
T Consensus       197 ----~~kVvGIDiS~~~lelA  213 (438)
T 3uwp_A          197 ----CKHHYGVEKADIPAKYA  213 (438)
T ss_dssp             ----CSEEEEEECCHHHHHHH
T ss_pred             ----CCEEEEEeCCHHHHHHH
Confidence                12589999999776653

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=96.00  E-value=0.011  Score=46.38  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=33.1

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...+|+|+|||+|.++..+...    .|     ..+++.||+|+...+.-++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~----~p-----~~~v~gvD~s~~~l~~a~~   83 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQ----NP-----DINYIGIDIQKSVLSYALD   83 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHH----CT-----TSEEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEEccCcCHHHHHHHHH----CC-----CCCEEEEEcCHHHHHHHHH
Confidence            3458999999999999876654    34     2479999999988876443

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=95.99  E-value=0.011  Score=46.97  Aligned_cols=42  Identities=19%  Similarity=0.140  Sum_probs=31.5

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ....+|+|+|||+|.++..+.+.    ..       +++.||+|+.+.+.-++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~----~~-------~v~gvD~s~~~~~~a~~   81 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE----GI-------ESIGVDINEDMIKFCEG   81 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH----TC-------CEEEECSCHHHHHHHHT
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC----CC-------cEEEEECCHHHHHHHHh
Confidence            34568999999999998765442    32       57999999988776443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=95.98  E-value=0.0076  Score=49.62  Aligned_cols=54  Identities=22%  Similarity=0.226  Sum_probs=37.2

Q ss_pred             HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .++.........+|+|+|||+|.++..+++.+   .|     ..+++.||+|+...+.-+++
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~---~~-----~~~v~~vD~s~~~~~~a~~~  154 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYAL---NG-----KGTLTVVERDEDNLKKAMDN  154 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHH---TT-----SSEEEEECSCHHHHHHHHHH
T ss_pred             HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHc---CC-----CCEEEEEECCHHHHHHHHHH
Confidence            44444455556699999999999998887754   22     23789999999888765443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=95.97  E-value=0.01  Score=47.19  Aligned_cols=43  Identities=21%  Similarity=0.312  Sum_probs=32.7

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ....|+|||||+|.++..+...    .| +    .+++.||+|+...+.-++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~----~p-~----~~v~giD~s~~~l~~a~~   80 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQ----NP-D----INYIGIELFKSVIVTAVQ   80 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHH----CT-T----SEEEEECSCHHHHHHHHH
T ss_pred             CCceEEEEecCCCHHHHHHHHH----CC-C----CCEEEEEechHHHHHHHH
Confidence            3458999999999998876543    34 2    479999999998776433

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.97  E-value=0.009  Score=47.64  Aligned_cols=44  Identities=16%  Similarity=-0.019  Sum_probs=32.7

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ....+|+|+|||+|.++..+.    +..+      .+++.||+|+.+.+.-++.
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~----~~~~------~~v~gvD~s~~~l~~a~~~  102 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQ----EAPI------DEHWIIECNDGVFQRLRDW  102 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHH----TSCE------EEEEEEECCHHHHHHHHHH
T ss_pred             CCCCeEEEEeccCCHHHHHHH----hcCC------CeEEEEcCCHHHHHHHHHH
Confidence            345699999999999887663    2222      2789999999998765443

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=95.96  E-value=0.013  Score=50.91  Aligned_cols=45  Identities=11%  Similarity=0.092  Sum_probs=35.2

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ....+|+|+|||+|.++..+++.+.   |     ..+++.||+|+.+.+.-++
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~---~-----~~~v~gvD~s~~~l~~a~~  126 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVG---E-----HGKVIGVDMLDNQLEVARK  126 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHT---T-----TCEEEEEECCHHHHHHHHH
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhC---C-----CCEEEEEECCHHHHHHHHH
Confidence            3456999999999999988877652   2     2379999999998876443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=95.95  E-value=0.013  Score=50.07  Aligned_cols=59  Identities=17%  Similarity=0.163  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.+|..++...+......|+|+|||+|+++..+.....   |     ..+++.+|+|+.+.+.-+++
T Consensus       189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~---~-----~~~v~g~Di~~~~i~~a~~n  247 (354)
T 3tma_A          189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLG---P-----TSPVYAGDLDEKRLGLAREA  247 (354)
T ss_dssp             HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHC---T-----TSCEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhC---C-----CceEEEEECCHHHHHHHHHH
Confidence            45777777777655667899999999999887766541   2     13589999999988875443

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=95.95  E-value=0.0097  Score=48.65  Aligned_cols=56  Identities=20%  Similarity=0.169  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ++.-|+.|...+. ..   .+.+|+|+|||+|..+..+.+.+    |    ...+++.||+|+...+.
T Consensus        45 ~~~~~~~l~~l~~-~~---~~~~VLDiG~G~G~~t~~la~~~----~----~~~~v~~iD~~~~~~~~  100 (242)
T 3r3h_A           45 APEQAQFMQMLIR-LT---RAKKVLELGTFTGYSALAMSLAL----P----DDGQVITCDINEGWTKH  100 (242)
T ss_dssp             CHHHHHHHHHHHH-HH---TCSEEEEEESCCSHHHHHHHHTS----C----TTCEEEEEECCCSSCCC
T ss_pred             CHHHHHHHHHHHh-hc---CcCEEEEeeCCcCHHHHHHHHhC----C----CCCEEEEEECCHHHHHH
Confidence            5666665554332 22   34589999999999999877654    2    13479999999987654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=95.87  E-value=0.0045  Score=46.38  Aligned_cols=44  Identities=14%  Similarity=0.258  Sum_probs=33.4

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ......+|+|+|||+|.++..+.+..          . +++.||+|+...+..++
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~----------~-~v~~vD~s~~~~~~a~~   57 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFA----------T-KLYCIDINVIALKEVKE   57 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTE----------E-EEEEECSCHHHHHHHHH
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhc----------C-eEEEEeCCHHHHHHHHH
Confidence            34456799999999999987665432          1 68999999988876543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=95.85  E-value=0.0074  Score=47.63  Aligned_cols=44  Identities=20%  Similarity=0.167  Sum_probs=32.7

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .....+|+|+|||+|.++..+.+.+.   |     ..+++.||+|+...+..
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~---~-----~~~v~~vD~s~~~~~~~  114 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVG---W-----EGKIFGIEFSPRVLREL  114 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHC---T-----TSEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhC---C-----CeEEEEEECCHHHHHHH
Confidence            33456899999999999998887652   2     12588999999765543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=95.85  E-value=0.004  Score=50.13  Aligned_cols=60  Identities=17%  Similarity=0.103  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +|.-++.+...+ ...   .+.+|+|+|||+|..+..++..+    |    ...+++.||+|+...+..+++
T Consensus        57 ~~~~~~~l~~l~-~~~---~~~~vLdiG~G~G~~~~~la~~~----~----~~~~v~~iD~~~~~~~~a~~~  116 (232)
T 3cbg_A           57 SPEQAQFLGLLI-SLT---GAKQVLEIGVFRGYSALAMALQL----P----PDGQIIACDQDPNATAIAKKY  116 (232)
T ss_dssp             CHHHHHHHHHHH-HHH---TCCEEEEECCTTSHHHHHHHTTS----C----TTCEEEEEESCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH-Hhc---CCCEEEEecCCCCHHHHHHHHhC----C----CCCEEEEEECCHHHHHHHHHH
Confidence            555555554432 222   34589999999999998887654    2    134799999999988765443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=95.84  E-value=0.017  Score=48.85  Aligned_cols=55  Identities=16%  Similarity=0.190  Sum_probs=40.0

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +..++.........+|+|+|||+|.++..++..+   .|     ..+++.||+||.+.+.-++
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~---g~-----~~~v~~vD~~~~~~~~a~~  148 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAV---GS-----QGRVISFEVRKDHHDLAKK  148 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHH---CT-----TCEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHh---CC-----CceEEEEeCCHHHHHHHHH
Confidence            4445555554555699999999999999887754   22     2368999999988876544

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=95.83  E-value=0.011  Score=48.23  Aligned_cols=41  Identities=15%  Similarity=0.106  Sum_probs=32.2

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+.+|+|+|||+|.++..+...    .       .+++.||+|+...+.-++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~----g-------~~v~~vD~s~~~~~~a~~  160 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL----G-------YDVTSWDHNENSIAFLNE  160 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT----T-------CEEEEEESCHHHHHHHHH
T ss_pred             CCCcEEEECCCCCHHHHHHHHC----C-------CeEEEEECCHHHHHHHHH
Confidence            5679999999999988776543    2       268999999998876444

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=95.82  E-value=0.013  Score=48.15  Aligned_cols=48  Identities=15%  Similarity=0.133  Sum_probs=36.5

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ......+|+|+|||+|.++.-+...    .|     ..+++.||+|+.+.+.-++++
T Consensus        33 ~~~~~~~VLDlG~G~G~~~l~la~~----~~-----~~~v~gvDi~~~~~~~a~~n~   80 (260)
T 2ozv_A           33 ADDRACRIADLGAGAGAAGMAVAAR----LE-----KAEVTLYERSQEMAEFARRSL   80 (260)
T ss_dssp             CCCSCEEEEECCSSSSHHHHHHHHH----CT-----TEEEEEEESSHHHHHHHHHHT
T ss_pred             cccCCCEEEEeCChHhHHHHHHHHh----CC-----CCeEEEEECCHHHHHHHHHHH
Confidence            3344569999999999998876654    23     247999999999988766554

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=95.81  E-value=0.02  Score=50.51  Aligned_cols=70  Identities=11%  Similarity=0.108  Sum_probs=48.9

Q ss_pred             ccccccccchH----HHHHHHHHHHHHHhC--CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895          101 SWFTPVELFKP----WYAHGIAEAIMRTAN--LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT  174 (186)
Q Consensus       101 dF~Ts~eifsp----~Fg~~lA~~i~~~~~--~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L  174 (186)
                      .|.+.+.+|+.    .=.+.+...+.+...  .....+|+|+|||+|.++..++..    .       .+++.||+|+..
T Consensus       199 ~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~----g-------~~V~gvDis~~a  267 (381)
T 3dmg_A          199 TFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM----G-------AEVVGVEDDLAS  267 (381)
T ss_dssp             EEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT----T-------CEEEEEESBHHH
T ss_pred             EEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc----C-------CEEEEEECCHHH
Confidence            47777878772    223455666655542  234569999999999999887653    2       268999999998


Q ss_pred             HHHHHHh
Q 029895          175 GRDTERN  181 (186)
Q Consensus       175 ~~~Q~~~  181 (186)
                      .+.-+++
T Consensus       268 l~~A~~n  274 (381)
T 3dmg_A          268 VLSLQKG  274 (381)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8765443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=95.78  E-value=0.037  Score=45.54  Aligned_cols=45  Identities=20%  Similarity=0.304  Sum_probs=34.0

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ....+|+|+|||+|.++..+...    .|     ..+.+.||+|+...+.-+++
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~----~~-----~~~v~~vD~s~~~~~~a~~~  123 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIV----RP-----ELELVLVDATRKKVAFVERA  123 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHH----CT-----TCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHH----CC-----CCEEEEEECCHHHHHHHHHH
Confidence            34569999999999998776553    23     24789999999988764443

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=95.76  E-value=0.025  Score=43.69  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=30.5

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...+|+|+|||+|.++..+      ..       .+++.||+|+.+.+.-++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l------~~-------~~v~~vD~s~~~~~~a~~   74 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL------PY-------PQKVGVEPSEAMLAVGRR   74 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC------CC-------SEEEEECCCHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHhHHhC------CC-------CeEEEEeCCHHHHHHHHH
Confidence            5569999999999988765      11       168999999998876543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=95.75  E-value=0.035  Score=44.44  Aligned_cols=43  Identities=16%  Similarity=0.131  Sum_probs=32.5

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...+|+|+|||+|.++..+...    .|     ..+++.||+|+.+.+.-++
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~----~~-----~~~v~~vD~s~~~~~~a~~  112 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKIC----FP-----HLHVTIVDSLNKRITFLEK  112 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHH----CT-----TCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHh----CC-----CCEEEEEeCCHHHHHHHHH
Confidence            4569999999999988877652    23     2469999999987765433

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=95.75  E-value=0.016  Score=51.13  Aligned_cols=66  Identities=14%  Similarity=0.064  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCccccc------------------------------ccce
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVY------------------------------NNMT  164 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y------------------------------~~l~  164 (186)
                      +.||..|+...+......|+|.|||+|+++........+..| .+.                              ...+
T Consensus       181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~ap-g~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAP-GLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCT-TTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCC-CcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            668888888776666678999999999998877766443222 110                              1256


Q ss_pred             EEEEecCcchHHHHHHh
Q 029895          165 YISVEIQSLTGRDTERN  181 (186)
Q Consensus       165 Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+-+|+|+...+.-+++
T Consensus       260 V~GvDid~~ai~~Ar~N  276 (385)
T 3ldu_A          260 IYGYDIDEESIDIAREN  276 (385)
T ss_dssp             EEEEESCHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHH
Confidence            89999999998875554

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=95.75  E-value=0.017  Score=45.09  Aligned_cols=41  Identities=12%  Similarity=0.188  Sum_probs=31.8

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      .....+|+|+|||+|.++..+...    .|     ..+++.||+|+.+.+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~----~p-----~~~v~gvD~s~~~l~   65 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQ----NP-----SRLVVALDADKSRME   65 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHH----CT-----TEEEEEEESCGGGGH
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHH----CC-----CCEEEEEECCHHHHH
Confidence            345568999999999999887653    33     247999999999544

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=95.74  E-value=0.024  Score=41.39  Aligned_cols=38  Identities=13%  Similarity=0.284  Sum_probs=29.3

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS  172 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp  172 (186)
                      .....+|+|+|||+|.++..+++.+   .|     ..+++.||+|+
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~---~~-----~~~v~~~D~~~   57 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQI---GG-----KGRIIACDLLP   57 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHH---CT-----TCEEEEEESSC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHh---CC-----CCeEEEEECcc
Confidence            3445699999999999999887764   22     13689999998

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=95.73  E-value=0.024  Score=50.38  Aligned_cols=59  Identities=10%  Similarity=0.071  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .-.+.+..++++..+....-+|+|+|||+|+++..+...    .       .+++.||+|+...+.-+++
T Consensus       269 ~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~----~-------~~V~gvD~s~~al~~A~~n  327 (433)
T 1uwv_A          269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ----A-------ASVVGVEGVPALVEKGQQN  327 (433)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT----S-------SEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh----C-------CEEEEEeCCHHHHHHHHHH
Confidence            346667777777776555568999999999999877543    2       2689999999888765443

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=95.72  E-value=0.046  Score=46.52  Aligned_cols=50  Identities=16%  Similarity=0.284  Sum_probs=36.5

Q ss_pred             HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      .+++.+......+|+|+|||+|.++..+++.    .|     ..+++.+|+ |...+.-+
T Consensus       181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~p-----~~~~~~~D~-~~~~~~a~  230 (359)
T 1x19_A          181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKH----FP-----ELDSTILNL-PGAIDLVN  230 (359)
T ss_dssp             HHHHHCCCTTCCEEEEESCTTCHHHHHHHHH----CT-----TCEEEEEEC-GGGHHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCcccHHHHHHHHH----CC-----CCeEEEEec-HHHHHHHH
Confidence            3444444455679999999999999888765    34     357999999 87776543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=95.68  E-value=0.0055  Score=47.38  Aligned_cols=50  Identities=10%  Similarity=0.178  Sum_probs=36.0

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..+.+.+. ..+.+|+|+|||+|.++..+...     +      .+++.||+|+.+.+..++
T Consensus        23 ~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-----~------~~~~~~D~~~~~~~~~~~   72 (230)
T 3cc8_A           23 PNLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-----G------TRVSGIEAFPEAAEQAKE   72 (230)
T ss_dssp             HHHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-----T------CEEEEEESSHHHHHHHHT
T ss_pred             HHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-----C------CeEEEEeCCHHHHHHHHH
Confidence            33444443 45679999999999998766543     2      369999999998876543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=95.67  E-value=0.032  Score=48.06  Aligned_cols=48  Identities=21%  Similarity=0.338  Sum_probs=35.0

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      +++.+......+|+|+|||+|.++..+++.    .|     .++++.+|+ |...+.-
T Consensus       194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~----~p-----~~~~~~~D~-~~~~~~a  241 (369)
T 3gwz_A          194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDA----FP-----GLRGTLLER-PPVAEEA  241 (369)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHH----CT-----TCEEEEEEC-HHHHHHH
T ss_pred             HHHhCCCccCcEEEEeCCCccHHHHHHHHH----CC-----CCeEEEEcC-HHHHHHH
Confidence            334434455679999999999999888765    34     357899999 7766553

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.65  E-value=0.021  Score=49.54  Aligned_cols=55  Identities=16%  Similarity=0.118  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +.++..++..+......+|+|+|||+|.++..+.+.    ..       +++.||+|+.+.+.-++
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~----g~-------~v~gvD~s~~~~~~a~~  147 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA----GV-------RHLGFEPSSGVAAKARE  147 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT----TC-------EEEEECCCHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc----CC-------cEEEECCCHHHHHHHHH
Confidence            345555666555556679999999999987766542    22       68999999988776433

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.65  E-value=0.017  Score=48.32  Aligned_cols=59  Identities=22%  Similarity=0.246  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      .|-++++...+..  .+.+.+|+|+|||+|.++..++..     +     ..+++.||+||.+.+.-++..
T Consensus        60 ~y~e~l~~~~l~~--~~~~~~VLdiG~G~G~~~~~l~~~-----~-----~~~v~~vDid~~~i~~ar~~~  118 (281)
T 1mjf_A           60 SYHEPLVHPAMLA--HPKPKRVLVIGGGDGGTVREVLQH-----D-----VDEVIMVEIDEDVIMVSKDLI  118 (281)
T ss_dssp             HHHHHHHHHHHHH--SSCCCEEEEEECTTSHHHHHHTTS-----C-----CSEEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh--CCCCCeEEEEcCCcCHHHHHHHhC-----C-----CCEEEEEECCHHHHHHHHHHH
Confidence            4666666422222  245579999999999999887754     2     137899999999988765543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=95.62  E-value=0.024  Score=45.64  Aligned_cols=57  Identities=14%  Similarity=0.353  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+.++..+..... ....+|+|+|||+|.++..+++.+    |     ..+++.||+|+.+.+.-++
T Consensus        71 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~----~-----~~~v~~vD~s~~~~~~a~~  127 (269)
T 1p91_A           71 RDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADAL----P-----EITTFGLDVSKVAIKAAAK  127 (269)
T ss_dssp             HHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTC----T-----TSEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhC----C-----CCeEEEEeCCHHHHHHHHH
Confidence            3445555554432 345689999999999998877643    2     1369999999998876543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=95.62  E-value=0.017  Score=46.57  Aligned_cols=41  Identities=20%  Similarity=0.253  Sum_probs=31.6

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ...+|+|||||+|.++..+...    .| +    .+++-||+|+...+.-
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~----~p-~----~~v~giD~s~~~l~~a   74 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKD----RP-E----QDFLGIEVHSPGVGAC   74 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHH----CT-T----SEEEEECSCHHHHHHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHH----CC-C----CeEEEEEecHHHHHHH
Confidence            3458999999999998776553    44 2    4799999999877653

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=95.61  E-value=0.016  Score=49.10  Aligned_cols=60  Identities=17%  Similarity=0.236  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..|-++++...+.  ..+.+.+|+|+|||+|.++..++..    .+     ..+++.||+|+.+.+..++.
T Consensus        79 ~~y~e~l~~~~l~--~~~~~~~VLdiG~G~G~~~~~l~~~----~~-----~~~v~~vDid~~~i~~a~~~  138 (304)
T 3bwc_A           79 FVYHEVLGHTSLC--SHPKPERVLIIGGGDGGVLREVLRH----GT-----VEHCDLVDIDGEVMEQSKQH  138 (304)
T ss_dssp             HHHHHHHHHHHHT--TSSSCCEEEEEECTTSHHHHHHHTC----TT-----CCEEEEEESCHHHHHHHHHH
T ss_pred             hHHHHHHhhhhhh--cCCCCCeEEEEcCCCCHHHHHHHhC----CC-----CCEEEEEECCHHHHHHHHHH
Confidence            3566666653322  2345679999999999999888753    22     24799999999998876554

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=95.58  E-value=0.029  Score=50.92  Aligned_cols=50  Identities=14%  Similarity=0.154  Sum_probs=36.5

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ..+++..+.....+|+|+|||+|.++..+....    +     ..+++-||+|+.+.+.
T Consensus       232 ~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~----g-----~~~V~GVDis~~~l~~  281 (433)
T 1u2z_A          232 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC----G-----CALSFGCEIMDDASDL  281 (433)
T ss_dssp             HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH----C-----CSEEEEEECCHHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHC----C-----CCEEEEEeCCHHHHHH
Confidence            334445555556799999999999998877653    2     1268999999987654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=95.58  E-value=0.018  Score=46.50  Aligned_cols=42  Identities=19%  Similarity=0.206  Sum_probs=32.5

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ....+|+|+|||+|.++..+...    .|     ..+++.||+|+.+.+.-
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~----~~-----~~~v~gvD~s~~~l~~a   89 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPA----FP-----EDLILGMEIRVQVTNYV   89 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHH----ST-----TSEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh----CC-----CCCEEEEEcCHHHHHHH
Confidence            34568999999999998877654    23     24799999999887653

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.57  E-value=0.021  Score=47.80  Aligned_cols=59  Identities=17%  Similarity=0.233  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .|-++++...+..  .+.+.+|+|+|||+|.++..++..    .+     ..+.+.||++|.+.+.-++.
T Consensus        60 ~y~e~l~~~~l~~--~~~~~~VLdiG~G~G~~~~~l~~~----~~-----~~~v~~vEid~~~v~~ar~~  118 (275)
T 1iy9_A           60 VYHEMVAHVPLFT--HPNPEHVLVVGGGDGGVIREILKH----PS-----VKKATLVDIDGKVIEYSKKF  118 (275)
T ss_dssp             HHHHHHHHHHHHH--SSSCCEEEEESCTTCHHHHHHTTC----TT-----CSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh--CCCCCEEEEECCchHHHHHHHHhC----CC-----CceEEEEECCHHHHHHHHHH
Confidence            4666666543222  245679999999999999887653    12     24789999999998875554

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=95.56  E-value=0.012  Score=46.22  Aligned_cols=42  Identities=12%  Similarity=0.121  Sum_probs=31.8

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..+|+|+|||+|.++..++..    ..      .+.+.||+|+.+.+.-+++
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~----~~------~~v~gvD~s~~~l~~a~~~   95 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSR----QA------KKVTFLELDKTVANQLKKN   95 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHT----TC------SEEEEECSCHHHHHHHHHH
T ss_pred             CCeEEEcCCccCHHHHHHHHc----cC------CEEEEEECCHHHHHHHHHH
Confidence            458999999999998875542    11      2689999999988875443

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=95.56  E-value=0.006  Score=52.22  Aligned_cols=72  Identities=11%  Similarity=0.114  Sum_probs=47.1

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+.+.+.+|++---...++.+++.+....+-+|+|+|||+|.++..++..    .|     ..+++.||+|+...+.-++
T Consensus       168 ~~~~~~gvf~~~~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~----~~-----~~~v~~vD~s~~~l~~a~~  238 (343)
T 2pjd_A          168 TVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARH----SP-----KIRLTLCDVSAPAVEASRA  238 (343)
T ss_dssp             EEEECTTCTTSSSCCHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHH----CT-----TCBCEEEESBHHHHHHHHH
T ss_pred             EEEecCCccCCCCCcHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHH----CC-----CCEEEEEECCHHHHHHHHH
Confidence            34555555554322234566666664334558999999999999877654    34     2368999999987776544


Q ss_pred             h
Q 029895          181 N  181 (186)
Q Consensus       181 ~  181 (186)
                      +
T Consensus       239 ~  239 (343)
T 2pjd_A          239 T  239 (343)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=95.53  E-value=0.016  Score=48.93  Aligned_cols=59  Identities=24%  Similarity=0.278  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .|-++++...+...  +.+.+|+|+|||+|.++..++...    +     ..+++.||+||...+.-++.
T Consensus        75 ~y~e~l~~~~l~~~--~~~~~VLdiG~G~G~~~~~l~~~~----~-----~~~v~~vDid~~~~~~a~~~  133 (296)
T 1inl_A           75 MYHEMLAHVPMFLH--PNPKKVLIIGGGDGGTLREVLKHD----S-----VEKAILCEVDGLVIEAARKY  133 (296)
T ss_dssp             HHHHHHHHHHHHHS--SSCCEEEEEECTTCHHHHHHTTST----T-----CSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHhHHHHhcC--CCCCEEEEEcCCcCHHHHHHHhcC----C-----CCEEEEEECCHHHHHHHHHH
Confidence            46677765433332  445799999999999998887541    2     24799999999988875544

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=95.52  E-value=0.012  Score=45.13  Aligned_cols=38  Identities=18%  Similarity=0.176  Sum_probs=29.7

Q ss_pred             eEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          132 KIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       132 ~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +|+|+|||+|.++..+++.    .       .+++.||+|+.+.+.-++
T Consensus        32 ~vLdiGcG~G~~~~~l~~~----~-------~~v~~vD~s~~~~~~a~~   69 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL----G-------YEVTAVDQSSVGLAKAKQ   69 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT----T-------CEEEEECSSHHHHHHHHH
T ss_pred             CEEEECCCCCHhHHHHHhC----C-------CeEEEEECCHHHHHHHHH
Confidence            9999999999998665442    1       279999999988776433

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=95.51  E-value=0.03  Score=44.07  Aligned_cols=42  Identities=7%  Similarity=-0.024  Sum_probs=32.6

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ..+...+|+|+|||+|.++..+.+.    .       .+++-||+|+.+.+.-
T Consensus        19 ~~~~~~~vLD~GCG~G~~~~~la~~----g-------~~V~gvD~S~~~l~~a   60 (203)
T 1pjz_A           19 NVVPGARVLVPLCGKSQDMSWLSGQ----G-------YHVVGAELSEAAVERY   60 (203)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHH----C-------CEEEEEEECHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCcHhHHHHHHC----C-------CeEEEEeCCHHHHHHH
Confidence            3445569999999999998776542    2       2689999999988864

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=95.51  E-value=0.017  Score=49.21  Aligned_cols=60  Identities=20%  Similarity=0.286  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      -.|-++++...+..  .+.+.+|+|+|||+|.++..++...    |     ..+++.||+||.+.+.-++.
T Consensus        61 ~~Y~e~l~~~~l~~--~~~~~~VLdiG~G~G~~~~~l~~~~----~-----~~~v~~vDid~~~i~~ar~~  120 (314)
T 1uir_A           61 YIYHETLVHPAMLT--HPEPKRVLIVGGGEGATLREVLKHP----T-----VEKAVMVDIDGELVEVAKRH  120 (314)
T ss_dssp             HHHHHHHHHHHHHH--SSCCCEEEEEECTTSHHHHHHTTST----T-----CCEEEEEESCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhc--CCCCCeEEEEcCCcCHHHHHHHhcC----C-----CCEEEEEECCHHHHHHHHHH
Confidence            34566666433222  2455799999999999998877541    2     24799999999988875443

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=95.50  E-value=0.021  Score=46.73  Aligned_cols=40  Identities=8%  Similarity=0.049  Sum_probs=30.7

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ....+|+|+|||+|.++..+++.    ..      .+++-||+|+.+.+.
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~----g~------~~V~gvDis~~ml~~   75 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQN----GA------KLVYALDVGTNQLAW   75 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT----TC------SEEEEECSSCCCCCH
T ss_pred             CCCCEEEEEccCCCHHHHHHHhc----CC------CEEEEEcCCHHHHHH
Confidence            34569999999999988777653    21      268999999987654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=95.50  E-value=0.019  Score=47.80  Aligned_cols=44  Identities=11%  Similarity=0.127  Sum_probs=34.4

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+|||+|.++..+...+    +     ..+++.||+|+.+.+.-++.
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~----~-----~~~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKW----G-----PSRMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHT----C-----CSEEEEEESCHHHHHHHHHT
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHc----C-----CCEEEEECCCHHHHHHHHHH
Confidence            45699999999999988877653    2     23799999999988875443

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=95.48  E-value=0.054  Score=45.92  Aligned_cols=42  Identities=12%  Similarity=0.030  Sum_probs=29.9

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +...+|+|+|||+|..+...   ++...       .+++-||+|+.+.+.-+
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~---~~~~~-------~~v~GiD~S~~~l~~A~   88 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKY---FYGEI-------ALLVATDPDADAIARGN   88 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHH---HHTTC-------SEEEEEESCHHHHHHHH
T ss_pred             CCCCeEEEEecCCcHhHHHH---HhcCC-------CeEEEEECCHHHHHHHH
Confidence            34579999999999755433   32221       26899999999988643

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=95.46  E-value=0.043  Score=46.42  Aligned_cols=48  Identities=19%  Similarity=0.299  Sum_probs=34.4

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      +++.+......+|+|+|||+|.++..++..    .|     .++++.+|+ |...+.-
T Consensus       175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~~-----~~~~~~~D~-~~~~~~a  222 (360)
T 1tw3_A          175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARR----AP-----HVSATVLEM-AGTVDTA  222 (360)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHH----CT-----TCEEEEEEC-TTHHHHH
T ss_pred             HHHhCCCccCcEEEEeCCcCcHHHHHHHHh----CC-----CCEEEEecC-HHHHHHH
Confidence            344444445679999999999999887764    34     257899999 7666653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=95.44  E-value=0.018  Score=49.55  Aligned_cols=61  Identities=20%  Similarity=0.198  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ..|-++++...+..  .+.+.+|+|+|||+|.++..++..    .|     ..+++.||+||.+.+..++..
T Consensus        92 ~~Y~e~l~~l~l~~--~~~~~~VLdIG~G~G~~~~~l~~~----~~-----~~~v~~vDid~~~i~~Ar~~~  152 (314)
T 2b2c_A           92 FSYQEMLAHLPMFA--HPDPKRVLIIGGGDGGILREVLKH----ES-----VEKVTMCEIDEMVIDVAKKFL  152 (314)
T ss_dssp             SHHHHHHHHHHHHH--SSSCCEEEEESCTTSHHHHHHTTC----TT-----CCEEEEECSCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHhh--CCCCCEEEEEcCCcCHHHHHHHHc----CC-----CCEEEEEECCHHHHHHHHHHH
Confidence            34666665433322  244569999999999999888754    22     247999999999988765543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=95.43  E-value=0.039  Score=46.49  Aligned_cols=38  Identities=21%  Similarity=0.339  Sum_probs=29.6

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ..+|+|+|||+|.++..+++.    .| .    ++++.+|+ |...+.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~----~p-~----~~~~~~D~-~~~~~~  217 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRR----HP-Q----LTGQIWDL-PTTRDA  217 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHH----CT-T----CEEEEEEC-GGGHHH
T ss_pred             CCEEEEeCCCcCHHHHHHHHh----CC-C----CeEEEEEC-HHHHHH
Confidence            679999999999999888754    34 2    57899999 555443

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=95.43  E-value=0.031  Score=46.49  Aligned_cols=48  Identities=21%  Similarity=0.212  Sum_probs=34.8

Q ss_pred             HHHHHhCC--CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          120 AIMRTANL--SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       120 ~i~~~~~~--~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      .+++.+..  ....+|+|+|||+|.++..+++..    | .    .+++.+|+| ...+.
T Consensus       154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----p-~----~~~~~~D~~-~~~~~  203 (335)
T 2r3s_A          154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN----P-N----AEIFGVDWA-SVLEV  203 (335)
T ss_dssp             HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC----T-T----CEEEEEECH-HHHHH
T ss_pred             HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC----C-C----CeEEEEecH-HHHHH
Confidence            34444444  566799999999999988877653    4 2    479999999 65554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=95.43  E-value=0.019  Score=49.36  Aligned_cols=61  Identities=16%  Similarity=0.193  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ..|-++++...+...  +.+.+|+|+|||+|.++..++.+    .|     ..+++.||+||...+.-++.+
T Consensus       100 ~~y~e~l~~~~l~~~--~~~~~VLdiG~G~G~~~~~l~~~----~~-----~~~v~~vDis~~~l~~ar~~~  160 (321)
T 2pt6_A          100 FAYHEMMTHVPMTVS--KEPKNVLVVGGGDGGIIRELCKY----KS-----VENIDICEIDETVIEVSKIYF  160 (321)
T ss_dssp             HHHHHHHHHHHHHHS--SSCCEEEEEECTTCHHHHHHTTC----TT-----CCEEEEEESCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHHc----CC-----CCEEEEEECCHHHHHHHHHHH
Confidence            356677665433322  45579999999999999888743    12     247999999999988765543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=95.41  E-value=0.017  Score=45.41  Aligned_cols=42  Identities=12%  Similarity=0.117  Sum_probs=31.9

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..+|+|+|||+|.++..++..    ..      .+.+.||+|+.+.+.-+++
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~----~~------~~V~~vD~s~~~l~~a~~~   96 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSR----YA------AGATLIEMDRAVSQQLIKN   96 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHT----TC------SEEEEECSCHHHHHHHHHH
T ss_pred             CCeEEEeCCCcCHHHHHHHhc----CC------CEEEEEECCHHHHHHHHHH
Confidence            458999999999999776542    11      1689999999998875443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=95.41  E-value=0.023  Score=48.43  Aligned_cols=61  Identities=21%  Similarity=0.235  Sum_probs=42.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...|-++++...  ....+.+.+|+|+|||+|.++..++..    .|     ..+++.||+|+.+.+.-++.
T Consensus        78 e~~y~e~l~~~~--l~~~~~~~~VLdiG~G~G~~~~~l~~~----~~-----~~~v~~vDid~~~i~~ar~~  138 (304)
T 2o07_A           78 EFSYQEMIANLP--LCSHPNPRKVLIIGGGDGGVLREVVKH----PS-----VESVVQCEIDEDVIQVSKKF  138 (304)
T ss_dssp             HHHHHHHHHHHH--HTTSSSCCEEEEEECTTSHHHHHHTTC----TT-----CCEEEEEESCHHHHHHHHHH
T ss_pred             chHHHHHHHHHH--HhhCCCCCEEEEECCCchHHHHHHHHc----CC-----CCEEEEEECCHHHHHHHHHH
Confidence            456666665422  223345679999999999999887753    22     24799999999998876554

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=95.38  E-value=0.022  Score=47.57  Aligned_cols=57  Identities=25%  Similarity=0.211  Sum_probs=40.2

Q ss_pred             HHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          117 IAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       117 lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ||..++.-+   .....-+|+|+|||+|+++..+.+..-...        +.+.||+||.+.+.-++.
T Consensus        62 laa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G--------~V~avD~s~~~~~~l~~~  121 (233)
T 4df3_A           62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRG--------RIYGVEFAPRVMRDLLTV  121 (233)
T ss_dssp             HHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTC--------EEEEEECCHHHHHHHHHH
T ss_pred             HHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCc--------eEEEEeCCHHHHHHHHHh
Confidence            455555433   233445999999999999999988764332        477899999987754433

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=95.38  E-value=0.037  Score=47.51  Aligned_cols=49  Identities=16%  Similarity=0.146  Sum_probs=33.2

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      .+.+.+........+|+|+|||+|.++..++..     +     ..+++.||+|+ +.+.
T Consensus        39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-----g-----~~~V~~vD~s~-~~~~   87 (348)
T 2y1w_A           39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-----G-----ARKIYAVEAST-MAQH   87 (348)
T ss_dssp             HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT-----T-----CSEEEEEECST-HHHH
T ss_pred             HHHHHhccccCCcCEEEEcCCCccHHHHHHHhC-----C-----CCEEEEECCHH-HHHH
Confidence            344444443334569999999999998765542     2     13789999997 4444

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=95.37  E-value=0.021  Score=47.82  Aligned_cols=61  Identities=15%  Similarity=0.141  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ..|-++++.-.  ....+.+.+|+|+|||+|.++..++.+    .|     ..+++.||+||.+.+..++.+
T Consensus        62 ~~Y~e~l~~~~--l~~~~~~~~VLdiG~G~G~~~~~l~~~----~~-----~~~v~~vDid~~~i~~a~~~~  122 (283)
T 2i7c_A           62 FAYHEMMTHVP--MTVSKEPKNVLVVGGGDGGIIRELCKY----KS-----VENIDICEIDETVIEVSKIYF  122 (283)
T ss_dssp             HHHHHHHHHHH--HTTSSSCCEEEEEECTTSHHHHHHTTC----TT-----CCEEEEEESCHHHHHHHHHHC
T ss_pred             hhHHHHHHHHH--HhcCCCCCeEEEEeCCcCHHHHHHHHc----CC-----CCEEEEEECCHHHHHHHHHHh
Confidence            34556555322  223345679999999999999988743    22     247999999999988765543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=95.36  E-value=0.023  Score=46.21  Aligned_cols=46  Identities=22%  Similarity=0.208  Sum_probs=34.2

Q ss_pred             CCC-CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          126 NLS-VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       126 ~~~-~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ... ...+|+|+|||+|.++.-+...    .+      .+++.||+|+...+.-+++
T Consensus        45 ~~~~~~~~vLDlG~G~G~~~~~la~~----~~------~~v~gvDi~~~~~~~a~~n   91 (259)
T 3lpm_A           45 YLPIRKGKIIDLCSGNGIIPLLLSTR----TK------AKIVGVEIQERLADMAKRS   91 (259)
T ss_dssp             CCCSSCCEEEETTCTTTHHHHHHHTT----CC------CEEEEECCSHHHHHHHHHH
T ss_pred             cCCCCCCEEEEcCCchhHHHHHHHHh----cC------CcEEEEECCHHHHHHHHHH
Confidence            444 5679999999999988755432    22      1799999999998875443

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=95.36  E-value=0.01  Score=47.17  Aligned_cols=39  Identities=26%  Similarity=0.346  Sum_probs=30.1

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT  174 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L  174 (186)
                      ....+|+|+|||+|+++..+++.+   .|     ..+++.||+||..
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~---g~-----~~~v~gvD~s~~~  114 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIV---GP-----DGLVYAVEFSHRS  114 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHH---CT-----TCEEEEECCCHHH
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHh---CC-----CcEEEEEECCHHH
Confidence            345689999999999999888764   22     1268899999864

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=95.36  E-value=0.015  Score=48.36  Aligned_cols=46  Identities=13%  Similarity=0.013  Sum_probs=36.3

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      +.+-+|+|+|||+|.+|.-+...    .|     ..+|+.+|+|+.+.+.-++++
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~----~p-----~a~~~A~Di~~~~leiar~~~   93 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNE----NE-----KIIYHAYDIDRAEIAFLSSII   93 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCS----SC-----CCEEEEECSCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhc----CC-----CCEEEEEeCCHHHHHHHHHHH
Confidence            44669999999999999865442    45     248999999999999866554

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=95.35  E-value=0.014  Score=47.72  Aligned_cols=41  Identities=17%  Similarity=0.230  Sum_probs=31.1

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      .....|+|||||+|.++..+..    ..|     ...++-||+|+.+.+.
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~----~~p-----~~~v~GiDis~~~l~~   85 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSP----LFP-----DTLILGLEIRVKVSDY   85 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGG----GST-----TSEEEEEESCHHHHHH
T ss_pred             CCCCeEEEEccCCcHHHHHHHH----HCC-----CCeEEEEECCHHHHHH
Confidence            3456899999999999876543    334     2479999999988764

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=95.34  E-value=0.0085  Score=45.95  Aligned_cols=36  Identities=11%  Similarity=0.171  Sum_probs=28.3

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      .-+|+|+|||+|.++..+...        .    +++.||+|+.+.+.
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~--------~----~v~gvD~s~~~~~~   59 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKR--------N----TVVSTDLNIRALES   59 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTT--------S----EEEEEESCHHHHHT
T ss_pred             CCeEEEeccCccHHHHHHHhc--------C----cEEEEECCHHHHhc
Confidence            349999999999988765432        1    68999999988764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=95.30  E-value=0.017  Score=46.27  Aligned_cols=38  Identities=18%  Similarity=0.207  Sum_probs=29.2

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT  174 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L  174 (186)
                      ...-+|+|+|||+|.++..+.+...         ..+++-||+||.+
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~---------~~~V~gvD~s~~~   93 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD---------EGIIYAVEYSAKP   93 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT---------TSEEEEECCCHHH
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC---------CCEEEEEECCHHH
Confidence            3445899999999999887766542         1268999999974

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=95.26  E-value=0.034  Score=49.29  Aligned_cols=66  Identities=18%  Similarity=0.129  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccc----------------c--------------ccce
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERV----------------Y--------------NNMT  164 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~----------------y--------------~~l~  164 (186)
                      +.||..++...+......|+|.+||+||++........+..| .+                +              ...+
T Consensus       187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~ap-g~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  265 (393)
T 3k0b_A          187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAP-GFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN  265 (393)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCT-TTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCC-CccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence            678888888776656678999999999998666654433222 11                0              1246


Q ss_pred             EEEEecCcchHHHHHHh
Q 029895          165 YISVEIQSLTGRDTERN  181 (186)
Q Consensus       165 Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+.+|+|+.+.+.-+++
T Consensus       266 V~GvDid~~al~~Ar~N  282 (393)
T 3k0b_A          266 IIGGDIDARLIEIAKQN  282 (393)
T ss_dssp             EEEEESCHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHH
Confidence            89999999998875554

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=95.11  E-value=0.078  Score=43.31  Aligned_cols=42  Identities=24%  Similarity=0.298  Sum_probs=32.1

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+|||+|.++..+..    ..+       +++.||+||...+.-+++
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~----~g~-------~v~gvDi~~~~v~~a~~n  161 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEK----LGG-------KALGVDIDPMVLPQAEAN  161 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH----TTC-------EEEEEESCGGGHHHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHH----hCC-------eEEEEECCHHHHHHHHHH
Confidence            346999999999999876443    222       689999999988875544

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=95.10  E-value=0.047  Score=45.68  Aligned_cols=49  Identities=18%  Similarity=0.276  Sum_probs=34.2

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ..+++.+.... .+|+|+|||+|.++..+++.    .| .    .+++.+|+ |...+.-
T Consensus       158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~----~p-~----~~~~~~D~-~~~~~~a  206 (334)
T 2ip2_A          158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQA----EP-S----ARGVMLDR-EGSLGVA  206 (334)
T ss_dssp             HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHH----CT-T----CEEEEEEC-TTCTHHH
T ss_pred             HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHH----CC-C----CEEEEeCc-HHHHHHH
Confidence            33444433334 79999999999999888764    34 2    47999999 7665543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=95.09  E-value=0.029  Score=48.74  Aligned_cols=60  Identities=22%  Similarity=0.240  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..|-++|+...+  ...+.+.+|+|||||+|.++..++.+    .|     ..+++.||+|+.+.+..++.
T Consensus       104 ~~y~e~L~~l~l--~~~~~~~~VLdIG~G~G~~a~~la~~----~~-----~~~V~~VDis~~~l~~Ar~~  163 (334)
T 1xj5_A          104 CAYQEMITHLPL--CSIPNPKKVLVIGGGDGGVLREVARH----AS-----IEQIDMCEIDKMVVDVSKQF  163 (334)
T ss_dssp             HHHHHHHHHHHH--TTSSCCCEEEEETCSSSHHHHHHTTC----TT-----CCEEEEEESCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH--hhCCCCCEEEEECCCccHHHHHHHHc----CC-----CCEEEEEECCHHHHHHHHHH
Confidence            356666665322  22345679999999999999887753    22     24799999999998875543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=95.06  E-value=0.045  Score=45.96  Aligned_cols=40  Identities=13%  Similarity=0.277  Sum_probs=30.8

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ...+|+|+|||+|.++..+++.    .|     .++++.+|+ |...+.-
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~----~p-----~~~~~~~D~-~~~~~~a  208 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTA----HE-----DLSGTVLDL-QGPASAA  208 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHH----CT-----TCEEEEEEC-HHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHH----CC-----CCeEEEecC-HHHHHHH
Confidence            3569999999999999888765    34     247899999 7666553

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=95.00  E-value=0.047  Score=48.40  Aligned_cols=66  Identities=18%  Similarity=0.095  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccc----------------c--------------ccce
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERV----------------Y--------------NNMT  164 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~----------------y--------------~~l~  164 (186)
                      +.||..|+...+....-.|+|.+||+||++........+..| .+                +              ...+
T Consensus       180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iap-g~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAP-GFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCT-TTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCC-CccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            678888887776556678999999999998766655443222 11                0              1246


Q ss_pred             EEEEecCcchHHHHHHh
Q 029895          165 YISVEIQSLTGRDTERN  181 (186)
Q Consensus       165 Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+.+|+|+...+.-+++
T Consensus       259 v~GvDid~~al~~Ar~N  275 (384)
T 3ldg_A          259 ISGFDFDGRMVEIARKN  275 (384)
T ss_dssp             EEEEESCHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHH
Confidence            99999999998875554

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=94.95  E-value=0.034  Score=47.17  Aligned_cols=43  Identities=21%  Similarity=0.350  Sum_probs=32.5

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ......+|+|+|||+|.++..+++.    .|     .++++.+|+ |...+.-
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~----~~-----~~~~~~~D~-~~~~~~a  221 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALR----AP-----HLRGTLVEL-AGPAERA  221 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHH----CT-----TCEEEEEEC-HHHHHHH
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHH----CC-----CCEEEEEeC-HHHHHHH
Confidence            3345679999999999998888765    24     357999999 7766653

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=94.92  E-value=0.055  Score=47.11  Aligned_cols=50  Identities=16%  Similarity=0.152  Sum_probs=33.8

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .+.+.+........+|+|+|||+|.++..+++.    ..      .+++.||+| .+.+.-
T Consensus        52 ~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~----g~------~~V~gvD~s-~~~~~a  101 (376)
T 3r0q_C           52 FNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA----GA------RKVYAVEAT-KMADHA  101 (376)
T ss_dssp             HHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT----TC------SEEEEEESS-TTHHHH
T ss_pred             HHHHHhccccCCCCEEEEeccCcCHHHHHHHhc----CC------CEEEEEccH-HHHHHH
Confidence            344443334455679999999999998776543    21      278999999 555543

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=94.63  E-value=0.08  Score=42.35  Aligned_cols=48  Identities=15%  Similarity=0.229  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEecCCch-hHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895          114 AHGIAEAIMRTANLSVPLKIYEIGGGSG-TCAKGVMDYIMLNAPERVYNNMTYISVEIQSL  173 (186)
Q Consensus       114 g~~lA~~i~~~~~~~~~l~IvEiGaG~G-tLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~  173 (186)
                      -+.||.||.+.+..  +-+|+|+|+|+| ..|.-+    +++.      .++.+.+|+||.
T Consensus        22 ~e~LaeYI~~~~~~--~~rVlEVG~G~g~~vA~~L----a~~~------g~~V~atDInp~   70 (153)
T 2k4m_A           22 WNDLAVYIIRCSGP--GTRVVEVGAGRFLYVSDYI----RKHS------KVDLVLTDIKPS   70 (153)
T ss_dssp             HHHHHHHHHHHSCS--SSEEEEETCTTCCHHHHHH----HHHS------CCEEEEECSSCS
T ss_pred             HHHHHHHHHhcCCC--CCcEEEEccCCChHHHHHH----HHhC------CCeEEEEECCcc
Confidence            68899999888743  359999999999 477644    3321      135677787764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=94.63  E-value=0.011  Score=49.59  Aligned_cols=56  Identities=9%  Similarity=-0.123  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .|-++++.-..  ...+.+.+|+|||||+|.+++.++.+ .          .+++.||++|.+.+.-++
T Consensus        57 ~y~e~l~~~~~--~~~~~~~~VL~iG~G~G~~~~~ll~~-~----------~~v~~veid~~~i~~ar~  112 (262)
T 2cmg_A           57 IESELLAHMGG--CTKKELKEVLIVDGFDLELAHQLFKY-D----------THIDFVQADEKILDSFIS  112 (262)
T ss_dssp             HHHHHHHHHHH--TTSSCCCEEEEESSCCHHHHHHHTTS-S----------CEEEEECSCHHHHGGGTT
T ss_pred             HHHHHHHHHhh--hcCCCCCEEEEEeCCcCHHHHHHHhC-C----------CEEEEEECCHHHHHHHHH
Confidence            45555543221  22345679999999999999888765 1          268999999998876443

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=94.59  E-value=0.053  Score=46.12  Aligned_cols=46  Identities=15%  Similarity=0.351  Sum_probs=32.7

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG  175 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~  175 (186)
                      +++.+..+...+|+|+|||+|.++..+++..    |     .++++.+|+++.+.
T Consensus       176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p-----~~~~~~~D~~~~~~  221 (348)
T 3lst_A          176 LARAGDFPATGTVADVGGGRGGFLLTVLREH----P-----GLQGVLLDRAEVVA  221 (348)
T ss_dssp             HHHHSCCCSSEEEEEETCTTSHHHHHHHHHC----T-----TEEEEEEECHHHHT
T ss_pred             HHHhCCccCCceEEEECCccCHHHHHHHHHC----C-----CCEEEEecCHHHhh
Confidence            3333344556799999999999998887753    4     24788899855443

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=94.56  E-value=0.036  Score=48.19  Aligned_cols=57  Identities=21%  Similarity=0.032  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +.+|..++... .....+|+|+|||+|+++..+...    .+     ..+++-+|+|+.+.+.-+++
T Consensus       204 ~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~----~~-----~~~v~g~Dis~~~l~~A~~n  260 (373)
T 3tm4_A          204 ASIANAMIELA-ELDGGSVLDPMCGSGTILIELALR----RY-----SGEIIGIEKYRKHLIGAEMN  260 (373)
T ss_dssp             HHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHT----TC-----CSCEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHh----CC-----CCeEEEEeCCHHHHHHHHHH
Confidence            34555555544 445568999999999998776543    21     12689999999988875443

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=94.55  E-value=0.033  Score=45.65  Aligned_cols=40  Identities=8%  Similarity=0.137  Sum_probs=27.8

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ...+|+|+|||+|.++  ++..  .. +     ..+++.||+|+.+.+.-
T Consensus        71 ~~~~vLDiGcG~G~~~--~l~~--~~-~-----~~~v~gvD~s~~~l~~a  110 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ--LLSA--CS-H-----FEDITMTDFLEVNRQEL  110 (289)
T ss_dssp             CCSEEEEETCTTCCGG--GTTG--GG-G-----CSEEEEECSCHHHHHHH
T ss_pred             CCCeEEEECCCcChHH--HHhh--cc-C-----CCeEEEeCCCHHHHHHH
Confidence            5569999999999943  2211  11 1     13799999999988754

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=94.53  E-value=0.051  Score=46.26  Aligned_cols=37  Identities=16%  Similarity=0.150  Sum_probs=27.0

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ..+|+|+|||+|.++..+.+.     +     ..+++.||+|+ +.+.
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~-----g-----~~~v~~vD~s~-~~~~   75 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH-----G-----AKHVIGVDMSS-IIEM   75 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-----C-----CSEEEEEESST-HHHH
T ss_pred             CCEEEEecCccHHHHHHHHHC-----C-----CCEEEEEChHH-HHHH
Confidence            458999999999998755432     2     13689999996 4443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=94.53  E-value=0.1  Score=44.14  Aligned_cols=52  Identities=4%  Similarity=0.011  Sum_probs=36.1

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+.+|+++|||||.-+-.|.-.+.+..+ ..-...+.+-+|+|+..-+.-++.
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~-~~~~~~~I~atDis~~~L~~Ar~~  156 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALG-MAPGRWKVFASDIDTEVLEKARSG  156 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHC-SCTTSEEEEEEESCHHHHHHHHHT
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcc-cCCCCeEEEEEECCHHHHHHHHhc
Confidence            4689999999999966555555544322 111135899999999988875553

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=94.50  E-value=0.09  Score=41.61  Aligned_cols=42  Identities=10%  Similarity=-0.020  Sum_probs=30.4

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      ....+|+|+|||+|.++.-+..    ..+      .+++.||+|+.+.+.-+
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~----~~~------~~v~gvD~s~~~l~~a~   96 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSAC----ESF------TEIIVSDYTDQNLWELQ   96 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGG----GTE------EEEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhh----ccc------CeEEEecCCHHHHHHHH
Confidence            3456899999999988765432    111      37999999998877543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=94.49  E-value=0.058  Score=44.76  Aligned_cols=49  Identities=31%  Similarity=0.323  Sum_probs=35.4

Q ss_pred             HHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895          118 AEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT  174 (186)
Q Consensus       118 A~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L  174 (186)
                      |..++..+   .....-+|+|+|||+|.++..+.+.+...        -+.+.||+||.+
T Consensus        62 a~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~--------G~V~avD~s~~~  113 (232)
T 3id6_C           62 AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELN--------GKAYGVEFSPRV  113 (232)
T ss_dssp             HHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTT--------SEEEEEECCHHH
T ss_pred             HHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCC--------CEEEEEECcHHH
Confidence            44444443   23445699999999999999988876332        268899999965

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=94.45  E-value=0.065  Score=44.96  Aligned_cols=45  Identities=18%  Similarity=0.145  Sum_probs=35.2

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHh---Ccccc-cccceEEEEecCc
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLN---APERV-YNNMTYISVEIQS  172 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~---~P~~~-y~~l~Y~iVEiSp  172 (186)
                      ...+++|+|+|.|+|.++...++.+.+.   .| +- ..+++|+.||..|
T Consensus        58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p-~~~~~~l~~isiE~~p  106 (257)
T 2qy6_A           58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHP-QAQLQRLHFISFEKFP  106 (257)
T ss_dssp             SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCT-TSSCCEEEEEEEESSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCC-CCCcceeEEEEEECCc
Confidence            3456899999999999999999988333   66 31 1257999999998

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=94.45  E-value=0.039  Score=47.50  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=27.4

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT  174 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L  174 (186)
                      ...+|+|+|||+|.++..+++.     +     ..+++.||+|+.+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-----g-----~~~v~gvD~s~~l  101 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-----G-----ARKVIGIECSSIS  101 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-----T-----CSEEEEEECSTHH
T ss_pred             CCCEEEEEeccchHHHHHHHHC-----C-----CCEEEEECcHHHH
Confidence            3468999999999998776653     2     1368999999733

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=94.26  E-value=0.045  Score=54.06  Aligned_cols=68  Identities=15%  Similarity=-0.072  Sum_probs=45.7

Q ss_pred             CccccccccchHHHHHHHHHHHHHHhCC--CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          100 ISWFTPVELFKPWYAHGIAEAIMRTANL--SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~~--~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ..|+||.++ ..    .+++.+....+.  +...+|+|.|||+|.++..+.+.+.+.      ...+.+-+|+++...+.
T Consensus       295 GqFYTP~eL-A~----lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei------~~~~IyGvEIDp~Al~L  363 (878)
T 3s1s_A          295 GVVPTDIEL-GK----VLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNV------MPRQIWANDIETLFLEL  363 (878)
T ss_dssp             BSSSCCHHH-HH----HHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTC------CGGGEEEECSCGGGHHH
T ss_pred             ceEcCCHHH-HH----HHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhccc------CCCeEEEEECCHHHHHH
Confidence            479999998 22    222221111322  345799999999999998887765322      23568899999998776


Q ss_pred             H
Q 029895          178 T  178 (186)
Q Consensus       178 Q  178 (186)
                      .
T Consensus       364 A  364 (878)
T 3s1s_A          364 L  364 (878)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=94.23  E-value=0.04  Score=42.19  Aligned_cols=39  Identities=13%  Similarity=0.171  Sum_probs=29.1

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL  173 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~  173 (186)
                      ....+|+|+|||+|.++..+++.+..       ...+++.||+|+.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~-------~~~~v~gvD~s~~   59 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKN-------YKNKIIGIDKKIM   59 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTT-------SCEEEEEEESSCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCC-------CCceEEEEeCCcc
Confidence            34568999999999999888765411       1246889999984

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=94.14  E-value=0.095  Score=43.61  Aligned_cols=43  Identities=12%  Similarity=0.129  Sum_probs=30.4

Q ss_pred             CCceEEEecCCc---hhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGS---GTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~---GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..-+|+|+|||+   |.++.-    +.+..| .    .+++.||+||.+.+.-++
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~----~~~~~p-~----~~v~~vD~sp~~l~~Ar~  122 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEV----AQSVNP-D----ARVVYVDIDPMVLTHGRA  122 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHH----HHHHCT-T----CEEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHH----HHHhCC-C----CEEEEEECChHHHHHHHH
Confidence            345899999999   977532    333344 2    478999999998776433

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=94.08  E-value=0.1  Score=44.75  Aligned_cols=40  Identities=18%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      .+...+|+|+|||+|.++..+++.    .| .    ++++.+|+ |.+.+
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~----~~-~----~~~~~~D~-~~~~~  246 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISK----YP-L----IKGINFDL-PQVIE  246 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHH----CT-T----CEEEEEEC-HHHHT
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHH----CC-C----CeEEEeCh-HHHHH
Confidence            445679999999999999888765    34 2    47888898 65443

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=93.89  E-value=0.088  Score=47.84  Aligned_cols=52  Identities=17%  Similarity=0.146  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      +.+.+.+++.+......+|+|+|||+|.++.-+..     .+     ..+.+.||+|+ +.+.
T Consensus       144 ~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~-----~~-----~~~V~gvD~s~-~l~~  195 (480)
T 3b3j_A          144 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQ-----AG-----ARKIYAVEAST-MAQH  195 (480)
T ss_dssp             HHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHH-----TT-----CSEEEEEECHH-HHHH
T ss_pred             HHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHH-----cC-----CCEEEEEEcHH-HHHH
Confidence            33445555554334456999999999998875443     22     13789999999 4443

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=93.88  E-value=0.12  Score=44.68  Aligned_cols=38  Identities=13%  Similarity=0.342  Sum_probs=29.1

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT  174 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L  174 (186)
                      .....+|+|+|||+|.++..+++..    | .    ++++.+|+ |..
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~----p-~----~~~~~~D~-~~~  236 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHY----P-T----IKGVNFDL-PHV  236 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC----T-T----CEEEEEEC-HHH
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHC----C-C----CeEEEecC-HHH
Confidence            4456799999999999999888753    4 2    46888888 543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=93.87  E-value=0.067  Score=49.14  Aligned_cols=41  Identities=15%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      ..+++|+|+|||.|.|+..+.+    ..-       +.+-||+|+...+.-+
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~----~ga-------~V~giD~~~~~i~~a~  105 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLAS----KGA-------TIVGIDFQQENINVCR  105 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHH----TTC-------EEEEEESCHHHHHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHh----CCC-------EEEEECCCHHHHHHHH
Confidence            4568999999999999887654    232       5899999998877543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=93.78  E-value=0.028  Score=46.65  Aligned_cols=46  Identities=7%  Similarity=-0.008  Sum_probs=33.8

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ....+|+|+|||+|.++..+...   ..|     ..+++.||+|+.+.+.-++.
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~---~~~-----~~~v~gvD~s~~~~~~a~~~  162 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYS---ACP-----GVQLVGIDYDPEALDGATRL  162 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCT---TCT-----TCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEecCCCCHHHHHHHHh---cCC-----CCeEEEEECCHHHHHHHHHH
Confidence            44568999999999988765321   122     35899999999988875544

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=93.75  E-value=0.053  Score=41.20  Aligned_cols=46  Identities=9%  Similarity=0.175  Sum_probs=29.6

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL  173 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~  173 (186)
                      ....+|+|+|||+|.++..+...+........-...+.+.||+|+.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            3346899999999999988877642110000000146889999984

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=93.61  E-value=0.098  Score=44.42  Aligned_cols=47  Identities=6%  Similarity=0.036  Sum_probs=35.4

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .....-+|+|+|||+|..+..+.+.+..        ..+++.||+|+...+.-++
T Consensus       115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~--------~~~v~avD~s~~~l~~a~~  161 (315)
T 1ixk_A          115 DPKPGEIVADMAAAPGGKTSYLAQLMRN--------DGVIYAFDVDENRLRETRL  161 (315)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTT--------CSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCC--------CCEEEEEcCCHHHHHHHHH
Confidence            4445569999999999999988776421        2368999999997765433

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=93.59  E-value=0.062  Score=43.39  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=28.2

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecC-cch
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ-SLT  174 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS-p~L  174 (186)
                      ..-+|+|||||+|.++..+..    ..|     ..+++-||+| +.+
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~----~~~-----~~~v~GvD~s~~~m   61 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAI----NDQ-----NTFYIGIDPVKENL   61 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHH----TCT-----TEEEEEECSCCGGG
T ss_pred             CCCEEEEEeccCcHHHHHHHH----hCC-----CCEEEEEeCCHHHH
Confidence            345899999999998877653    233     2478999999 777

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=93.58  E-value=0.1  Score=44.96  Aligned_cols=39  Identities=21%  Similarity=0.381  Sum_probs=29.4

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG  175 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~  175 (186)
                      .....+|+|+|||+|.++..+++.    .| .    ++++.+|+ |...
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~----~p-~----~~~~~~D~-~~~~  239 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAK----YP-S----INAINFDL-PHVI  239 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHH----CT-T----CEEEEEEC-HHHH
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHh----CC-C----CEEEEEeh-HHHH
Confidence            344579999999999999988765    34 2    46888888 5443

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=93.53  E-value=0.097  Score=44.89  Aligned_cols=41  Identities=20%  Similarity=0.373  Sum_probs=31.4

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ....+|+|+|||+|.++..+++.    .| .    ++++.+|+ |...+.-
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~----~p-~----~~~~~~D~-~~~~~~a  218 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQY----NK-E----VEVTIVDL-PQQLEMM  218 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHH----ST-T----CEEEEEEC-HHHHHHH
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHh----CC-C----CEEEEEeC-HHHHHHH
Confidence            34569999999999999888765    34 3    47999999 6665543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=93.51  E-value=0.096  Score=40.99  Aligned_cols=35  Identities=26%  Similarity=0.201  Sum_probs=26.8

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +.+|+|+|||+|.++..++       . .       +.||+|+.+.+..+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~-------~-~-------~~vD~s~~~~~~a~   82 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLK-------I-K-------IGVEPSERMAEIAR   82 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHT-------C-C-------EEEESCHHHHHHHH
T ss_pred             CCcEEEeCCCCCHHHHHHH-------H-H-------hccCCCHHHHHHHH
Confidence            5699999999999886442       1 1       78899998877643

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=93.48  E-value=0.078  Score=43.82  Aligned_cols=46  Identities=15%  Similarity=0.121  Sum_probs=34.7

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      .....-+|+|+|||+|..+..+...+..        ..+++.||+|+...+.-+
T Consensus        80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~--------~~~v~avD~~~~~l~~~~  125 (274)
T 3ajd_A           80 NPREDDFILDMCAAPGGKTTHLAQLMKN--------KGTIVAVEISKTRTKALK  125 (274)
T ss_dssp             CCCTTCEEEETTCTTCHHHHHHHHHTTT--------CSEEEEEESCHHHHHHHH
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCC--------CCEEEEECCCHHHHHHHH
Confidence            4444569999999999999988776422        236899999998776533

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=93.44  E-value=0.17  Score=43.83  Aligned_cols=50  Identities=16%  Similarity=0.082  Sum_probs=36.8

Q ss_pred             HHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          123 RTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       123 ~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+...+-+|+|+|||+|.++.-++..    .+     ..+.+-||+||.+.++-+++
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~----~~-----ga~V~gIDis~~~l~~Ar~~  165 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSH----VY-----GMRVNVVEIEPDIAELSRKV  165 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHH----TT-----CCEEEEEESSHHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHH----cc-----CCEEEEEECCHHHHHHHHHH
Confidence            3445566779999999999887766532    12     24799999999999875443

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=93.36  E-value=0.055  Score=46.59  Aligned_cols=43  Identities=16%  Similarity=0.151  Sum_probs=30.0

Q ss_pred             CCceEEEecCCchh--HHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          129 VPLKIYEIGGGSGT--CAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       129 ~~l~IvEiGaG~Gt--LA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      ..-+|+++|||.||  +...|+..   ..| +    .+.+-||.||.+-+.-+
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~---~~P-~----arVv~VD~sp~mLa~Ar  122 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQS---VAP-E----SRVVYVDNDPIVLTLSQ  122 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHH---HCT-T----CEEEEEECCHHHHHTTH
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHH---HCC-C----CEEEEEeCChHHHHHHH
Confidence            34589999999855  44444443   355 3    47899999999887643

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=93.28  E-value=0.15  Score=48.52  Aligned_cols=66  Identities=15%  Similarity=0.109  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccc---------------------------------
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYN---------------------------------  161 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~---------------------------------  161 (186)
                      +.||..++...+......|+|.+||+||++........+..| .+..                                 
T Consensus       176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~ap-G~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~  254 (703)
T 3v97_A          176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAP-GLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE  254 (703)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCT-TTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCC-CCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence            578888888776556678999999999998777665443333 2211                                 


Q ss_pred             -cceEEEEecCcchHHHHHHh
Q 029895          162 -NMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       162 -~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                       ..+++-+|++|...+.-+++
T Consensus       255 ~~~~i~G~Did~~av~~A~~N  275 (703)
T 3v97_A          255 YSSHFYGSDSDARVIQRARTN  275 (703)
T ss_dssp             CCCCEEEEESCHHHHHHHHHH
T ss_pred             CCccEEEEECCHHHHHHHHHH
Confidence             15789999999998875544

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=93.24  E-value=0.13  Score=39.81  Aligned_cols=32  Identities=19%  Similarity=0.288  Sum_probs=24.9

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL  173 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~  173 (186)
                      ....+|+|+|||+|.++..+       .       .+++.||+|+.
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l-------~-------~~v~~~D~s~~   97 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSI-------R-------NPVHCFDLASL   97 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHC-------C-------SCEEEEESSCS
T ss_pred             CCCCeEEEECCcCCHHHHHh-------h-------ccEEEEeCCCC
Confidence            44568999999999987655       1       25788898886

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=93.15  E-value=0.11  Score=44.55  Aligned_cols=54  Identities=15%  Similarity=0.230  Sum_probs=39.7

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+.+++.+.....-+|+|+|||+|.++..++..+    |     ..+.+.||+|+...+.-++
T Consensus        15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~----~-----~~~VigvD~d~~al~~A~~   68 (301)
T 1m6y_A           15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHC----P-----GCRIIGIDVDSEVLRIAEE   68 (301)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHC----T-----TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHC----C-----CCEEEEEECCHHHHHHHHH
Confidence            3444455554455699999999999999988764    2     1368999999998887544

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=92.68  E-value=0.12  Score=42.75  Aligned_cols=45  Identities=11%  Similarity=0.025  Sum_probs=34.2

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...-+|+|+|||+|+++..+....    +     ..+.+.||+||...+.-+++
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~----~-----~~~V~~vD~s~~av~~a~~n  162 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYS----K-----PKLVYAIEKNPTAYHYLCEN  162 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT----C-----CSEEEEEECCHHHHHHHHHH
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhC----C-----CCEEEEEeCCHHHHHHHHHH
Confidence            344589999999999998876542    1     24689999999888865443

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=92.65  E-value=0.24  Score=43.65  Aligned_cols=66  Identities=12%  Similarity=0.094  Sum_probs=44.5

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .|+.|..-    +.+.+...++..+   ...+|+|+|||+|.++..++..+    +     ..+.+.||+|+...+.-++
T Consensus        26 ~F~np~~~----~nr~l~~~~l~~~---~~~~VLDl~aGtG~~~l~~a~~~----~-----~~~V~avDi~~~av~~a~~   89 (378)
T 2dul_A           26 VFYNPRMA----LNRDIVVVLLNIL---NPKIVLDALSATGIRGIRFALET----P-----AEEVWLNDISEDAYELMKR   89 (378)
T ss_dssp             CCCCGGGH----HHHHHHHHHHHHH---CCSEEEESSCTTSHHHHHHHHHS----S-----CSEEEEEESCHHHHHHHHH
T ss_pred             ceeCCchH----HHHHHHHHHHHHc---CCCEEEECCCchhHHHHHHHHhC----C-----CCeEEEEECCHHHHHHHHH
Confidence            46655533    3444444444444   35689999999999998877643    2     1358999999999887665


Q ss_pred             hc
Q 029895          181 NC  182 (186)
Q Consensus       181 ~~  182 (186)
                      ++
T Consensus        90 N~   91 (378)
T 2dul_A           90 NV   91 (378)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=92.53  E-value=0.15  Score=43.44  Aligned_cols=34  Identities=18%  Similarity=0.360  Sum_probs=26.6

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecC
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ  171 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS  171 (186)
                      ...+|+|+|||+|.++..+++.    .| .    ++++.+|++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~----~p-~----~~~~~~D~~  226 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEI----FP-H----LKCTVFDQP  226 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHH----CT-T----SEEEEEECH
T ss_pred             CCCEEEEECCCcCHHHHHHHHH----CC-C----CeEEEeccH
Confidence            4469999999999999988765    34 2    468888983

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=92.53  E-value=0.23  Score=44.42  Aligned_cols=54  Identities=15%  Similarity=0.098  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+.+.+++.+ .  ...-+|+|+|||+|+++..+.+.    ..       +.+.||+|+...+.-+++
T Consensus       278 ~e~l~~~~~~-~--~~~~~VLDlgcG~G~~sl~la~~----~~-------~V~gvD~s~~ai~~A~~n  331 (425)
T 2jjq_A          278 AVNLVRKVSE-L--VEGEKILDMYSGVGTFGIYLAKR----GF-------NVKGFDSNEFAIEMARRN  331 (425)
T ss_dssp             HHHHHHHHHH-H--CCSSEEEEETCTTTHHHHHHHHT----TC-------EEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhhc-c--CCCCEEEEeeccchHHHHHHHHc----CC-------EEEEEECCHHHHHHHHHH
Confidence            4555566655 3  33458999999999999876542    22       689999999988865444

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=92.41  E-value=0.12  Score=43.82  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=29.6

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      +...+|+|+|||+|.++..+++.    .| .    ++++.+|+ |.+.+
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~----~p-~----~~~~~~D~-~~~~~  225 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICET----FP-K----LKCIVFDR-PQVVE  225 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHH----CT-T----CEEEEEEC-HHHHT
T ss_pred             ccCceEEEeCCCccHHHHHHHHH----CC-C----CeEEEeeC-HHHHh
Confidence            34569999999999998888754    34 2    47899999 76544

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=92.29  E-value=0.057  Score=53.71  Aligned_cols=58  Identities=21%  Similarity=0.292  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +....++.+........+|+|+|||+|.++..+.+.    .+    ...+++-||+|+.+.+.-++
T Consensus       707 eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~----g~----p~a~VtGVDIS~emLe~ARe  764 (950)
T 3htx_A          707 KQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDY----PT----SLQTIIGVDISPKGLARAAK  764 (950)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSS----CC----CCCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHh----CC----CCCeEEEEECCHHHHHHHHH
Confidence            333444555553335679999999999998765432    21    12478999999998876433

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=92.17  E-value=0.32  Score=41.90  Aligned_cols=42  Identities=17%  Similarity=0.132  Sum_probs=32.5

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+|||+|.++..++..    ..       +.+.||+|+...+.-+++
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~----ga-------~V~~VD~s~~al~~a~~n  194 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAA----GA-------EVTHVDASKKAIGWAKEN  194 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT----TC-------EEEEECSCHHHHHHHHHH
T ss_pred             CCCcEEEcccccCHHHHHHHHc----CC-------EEEEEECCHHHHHHHHHH
Confidence            3458999999999999877652    21       689999999988765443

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=92.11  E-value=0.44  Score=41.16  Aligned_cols=56  Identities=16%  Similarity=0.131  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .+.+..++.+..... .-+|+|+|||+|+++.-+..    ...       +.+.||+|+...+.-+++
T Consensus       199 ~~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~----~~~-------~V~gvd~~~~ai~~a~~n  254 (369)
T 3bt7_A          199 NIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALAR----NFD-------RVLATEIAKPSVAAAQYN  254 (369)
T ss_dssp             HHHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGG----GSS-------EEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHh----cCC-------EEEEEECCHHHHHHHHHH
Confidence            356667776666433 35799999999999984432    222       688999999988865444

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=91.96  E-value=0.16  Score=43.54  Aligned_cols=43  Identities=14%  Similarity=0.067  Sum_probs=35.3

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      +.+-+|+|+|||.|-|+.-+.       |     ..+|+.+|||+.+.+.-++++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-------~-----~~~y~a~DId~~~i~~ar~~~  146 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-------G-----IASVWGCDIHQGLGDVITPFA  146 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-------T-----CSEEEEEESBHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc-------c-----CCeEEEEeCCHHHHHHHHHHH
Confidence            457799999999999998776       2     247999999999999865554

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=91.95  E-value=0.17  Score=44.20  Aligned_cols=46  Identities=20%  Similarity=0.216  Sum_probs=36.2

Q ss_pred             HhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895          124 TANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS  172 (186)
Q Consensus       124 ~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp  172 (186)
                      .|.....++|+|+|=|+|-++.--+.++.+..| .  .+++|+-+|..|
T Consensus        91 r~~~~~~~~IlE~GFGTGLNfl~t~~~~~~~~~-~--~~L~~iS~Ek~p  136 (308)
T 3vyw_A           91 KAKERKVIRILDVGFGLGYNLAVALKHLWEVNP-K--LRVEIISFEKEL  136 (308)
T ss_dssp             HHHHCSEEEEEEECCTTSHHHHHHHHHHHHHCT-T--CEEEEEEEESSC
T ss_pred             HhcCCCCcEEEEeCCCccHHHHHHHHHHHHhCC-C--cceEEEeecHHH
Confidence            343455689999999999999888887777777 4  478999999743

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=91.77  E-value=0.21  Score=41.96  Aligned_cols=56  Identities=14%  Similarity=0.191  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          113 YAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       113 Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      |-..|...+++....+ .-.|+|++||+|+.+...+..    .       .+++.||++|...+.-++
T Consensus       220 ~p~~l~~~~i~~~~~~-~~~vlD~f~GsGt~~~~a~~~----g-------~~~~g~e~~~~~~~~a~~  275 (297)
T 2zig_A          220 FPLELAERLVRMFSFV-GDVVLDPFAGTGTTLIAAARW----G-------RRALGVELVPRYAQLAKE  275 (297)
T ss_dssp             SCHHHHHHHHHHHCCT-TCEEEETTCTTTHHHHHHHHT----T-------CEEEEEESCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCC-CCEEEECCCCCCHHHHHHHHc----C-------CeEEEEeCCHHHHHHHHH
Confidence            3456777777777533 348999999999999876542    1       268999999998887543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=91.61  E-value=0.12  Score=42.04  Aligned_cols=42  Identities=7%  Similarity=-0.023  Sum_probs=28.4

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .....+|+|+|||+|.++.-.+    ...      .-+++.||+|+.+.+.-
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~----~~~------~~~v~g~D~s~~~l~~a   94 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAA----CDS------FQDITLSDFTDRNREEL   94 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTG----GGT------EEEEEEEESCHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHH----Hhh------hcceeeccccHHHHHHH
Confidence            3445689999999998753211    111      12689999999887753

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=91.20  E-value=0.14  Score=42.51  Aligned_cols=42  Identities=17%  Similarity=0.139  Sum_probs=32.3

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .-+|+|+|||+|.++..+...    .+     . +.+.||+||...+.-+++
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~----~~-----~-~V~~vD~s~~~~~~a~~n  167 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVY----GK-----A-KVIAIEKDPYTFKFLVEN  167 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHH----TC-----C-EEEEECCCHHHHHHHHHH
T ss_pred             CCEEEEecccCCHHHHHHHHh----CC-----C-EEEEEECCHHHHHHHHHH
Confidence            458999999999999877654    22     1 589999999988765443

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=91.15  E-value=0.41  Score=41.16  Aligned_cols=52  Identities=13%  Similarity=0.140  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHhCC-CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          115 HGIAEAIMRTANL-SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       115 ~~lA~~i~~~~~~-~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      .-|...+ +.++. ....+|+|+|||+|.++.-++..    ..      -+.+-||+|+.+-+.
T Consensus        71 ~Kl~~~l-~~~~~~~~g~~vLDiGcGTG~~t~~L~~~----ga------~~V~aVDvs~~mL~~  123 (291)
T 3hp7_A           71 LKLEKAL-AVFNLSVEDMITIDIGASTGGFTDVMLQN----GA------KLVYAVDVGTNQLVW  123 (291)
T ss_dssp             HHHHHHH-HHTTCCCTTCEEEEETCTTSHHHHHHHHT----TC------SEEEEECSSSSCSCH
T ss_pred             HHHHHHH-HhcCCCccccEEEecCCCccHHHHHHHhC----CC------CEEEEEECCHHHHHH
Confidence            3444333 33333 34569999999999999766553    11      257889999985543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=90.63  E-value=0.2  Score=39.37  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=26.3

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL  173 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~  173 (186)
                      ....+|+|+|||+|.++.-+.+.    .       .+.+-||+||.
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~----~-------~~V~gvD~~~~   58 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL----A-------RKIISIDLQEM   58 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT----C-------SEEEEEESSCC
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc----C-------CcEEEEecccc
Confidence            34569999999999998876553    2       25778888874

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=90.56  E-value=0.33  Score=43.19  Aligned_cols=49  Identities=2%  Similarity=0.078  Sum_probs=36.1

Q ss_pred             HhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          124 TANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       124 ~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .......-+|+|+|||+|..+..+...+..        ..+++.+|+|+...+.-++
T Consensus       254 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~--------~~~v~a~D~s~~~l~~~~~  302 (450)
T 2yxl_A          254 VLDPKPGETVVDLAAAPGGKTTHLAELMKN--------KGKIYAFDVDKMRMKRLKD  302 (450)
T ss_dssp             HHCCCTTCEEEESSCTTCHHHHHHHHHTTT--------CSEEEEECSCHHHHHHHHH
T ss_pred             hcCCCCcCEEEEeCCCccHHHHHHHHHcCC--------CCEEEEEcCCHHHHHHHHH
Confidence            334444568999999999999998776521        2468999999987765433

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=90.48  E-value=0.18  Score=45.47  Aligned_cols=69  Identities=16%  Similarity=0.067  Sum_probs=46.3

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      -|+|+.+-+.+-=.+.+|++..+.+..  .-+|+|+|||+|..+..+    ....       .+.+.||+|+.+.+.-++
T Consensus        67 l~~p~~~~~eQat~e~vA~~~a~~l~~--g~~VLDLgcG~G~~al~L----A~~g-------~~V~~VD~s~~~l~~Ar~  133 (410)
T 3ll7_A           67 LYIPSRLSLEQSSGAVTSSYKSRFIRE--GTKVVDLTGGLGIDFIAL----MSKA-------SQGIYIERNDETAVAARH  133 (410)
T ss_dssp             CCCCCHHHHHHSCCHHHHHHGGGGSCT--TCEEEESSCSSSHHHHHH----HTTC-------SEEEEEESCHHHHHHHHH
T ss_pred             eecCCCCChhhcCHHHHHHHHHHhcCC--CCEEEEeCCCchHHHHHH----HhcC-------CEEEEEECCHHHHHHHHH
Confidence            355655122455567788886655532  468999999999987643    2222       268999999999987655


Q ss_pred             hc
Q 029895          181 NC  182 (186)
Q Consensus       181 ~~  182 (186)
                      ++
T Consensus       134 N~  135 (410)
T 3ll7_A          134 NI  135 (410)
T ss_dssp             HH
T ss_pred             hH
Confidence            54

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=90.17  E-value=0.43  Score=42.07  Aligned_cols=48  Identities=10%  Similarity=0.120  Sum_probs=35.9

Q ss_pred             HhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          124 TANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       124 ~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .......-+|+|+|||+|..+..++...    +     +.+++.+|+|+...+.-++
T Consensus       241 ~l~~~~g~~VLDlgaG~G~~t~~la~~~----~-----~~~v~a~D~~~~~l~~~~~  288 (429)
T 1sqg_A          241 WLAPQNGEHILDLCAAPGGKTTHILEVA----P-----EAQVVAVDIDEQRLSRVYD  288 (429)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHHHHHHHC----T-----TCEEEEEESSTTTHHHHHH
T ss_pred             HcCCCCcCeEEEECCCchHHHHHHHHHc----C-----CCEEEEECCCHHHHHHHHH
Confidence            3344455699999999999999888753    2     1468999999987775433

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=89.88  E-value=0.74  Score=44.80  Aligned_cols=62  Identities=16%  Similarity=0.187  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHhCC-CCCceEEEecCCchhHHHHHHHHHHHhC----cccccccceEEEEecCcc
Q 029895          112 WYAHGIAEAIMRTANL-SVPLKIYEIGGGSGTCAKGVMDYIMLNA----PERVYNNMTYISVEIQSL  173 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~~~-~~~l~IvEiGaG~GtLA~dIL~~l~~~~----P~~~y~~l~Y~iVEiSp~  173 (186)
                      .|-++|...+...... .....|+++|||+|-|..-.+.+.+...    -.....+.+.+.||.||.
T Consensus       391 ~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~  457 (745)
T 3ua3_A          391 VYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPN  457 (745)
T ss_dssp             HHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHH
T ss_pred             HHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChH
Confidence            4666776666555421 3356899999999999887777765321    001123468899999984

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=89.85  E-value=0.44  Score=40.82  Aligned_cols=41  Identities=29%  Similarity=0.374  Sum_probs=29.3

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      .+..-+|+|+|||+|.++..|++.    +| +    ++.++.|. |...+.
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~----~p-~----~~~~~~dl-p~v~~~  217 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSL----YP-G----CKITVFDI-PEVVWT  217 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHH----CS-S----CEEEEEEC-HHHHHH
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHh----CC-C----ceeEeccC-HHHHHH
Confidence            344458999999999999888764    46 4    46777776 555444

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=89.84  E-value=0.41  Score=39.60  Aligned_cols=44  Identities=9%  Similarity=0.074  Sum_probs=32.9

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+|||+|.++..+...    .|     ..+.+.||+||...+.-+++
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~----~~-----~~~V~avDi~~~al~~A~~N   58 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVER----GQ-----IKSAIAGEVVEGPYQSAVKN   58 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHT----TS-----EEEEEEEESSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHh----CC-----CCEEEEEECCHHHHHHHHHH
Confidence            3468999999999998876542    33     23688999999988865443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=89.06  E-value=0.4  Score=41.57  Aligned_cols=42  Identities=14%  Similarity=0.011  Sum_probs=33.0

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..-+|+|+|||+|+++..+...    .       .+.+.||+|+...+.-+++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~----~-------~~v~~vD~s~~~~~~a~~n  250 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG----F-------REVVAVDSSAEALRRAEEN  250 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH----E-------EEEEEEESCHHHHHHHHHH
T ss_pred             CCCeEEEeeeccCHHHHHHHHh----C-------CEEEEEECCHHHHHHHHHH
Confidence            4468999999999999887764    2       2589999999888765444

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=89.03  E-value=0.62  Score=41.29  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=24.5

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      .-+|+|+|||+|.|+.-.    .+...      .+.+.||.|+ +.+.
T Consensus        84 ~k~VLDvG~GtGiLs~~A----a~aGA------~~V~ave~s~-~~~~  120 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFC----AQAGA------RRVYAVEASA-IWQQ  120 (376)
T ss_dssp             TCEEEEETCTTSHHHHHH----HHTTC------SEEEEEECST-THHH
T ss_pred             CCEEEEeCCCccHHHHHH----HHhCC------CEEEEEeChH-HHHH
Confidence            348999999999886321    12222      2578899998 4443

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=88.59  E-value=0.47  Score=43.26  Aligned_cols=48  Identities=8%  Similarity=0.055  Sum_probs=36.3

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .....-+|+|+|||+|..+..+...+..        .-+.+.||+|+...+.-+++
T Consensus        98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~--------~g~V~AvDis~~~l~~a~~n  145 (464)
T 3m6w_A           98 DPKPGERVLDLAAAPGGKTTHLAARMGG--------KGLLLANEVDGKRVRGLLEN  145 (464)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTT--------CSEEEEECSCHHHHHHHHHH
T ss_pred             CcCCCCEEEEEcCCcCHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHH
Confidence            4445569999999999999998876532        13688999999887764443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=88.34  E-value=1  Score=38.96  Aligned_cols=60  Identities=17%  Similarity=0.119  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      -.|-|+|+.--+...  +.+-+|+-||+|.|..++.+|.+.    +     -.+.++|||.|...+..++.
T Consensus        67 ~~YhE~l~h~~l~~~--p~pk~VLIiGgGdG~~~revlk~~----~-----v~~v~~VEID~~Vv~~a~~~  126 (294)
T 3o4f_A           67 FIYHEMMTHVPLLAH--GHAKHVLIIGGGDGAMLREVTRHK----N-----VESITMVEIDAGVVSFCRQY  126 (294)
T ss_dssp             HHHHHHHHHHHHHHS--SCCCEEEEESCTTSHHHHHHHTCT----T-----CCEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhC--CCCCeEEEECCCchHHHHHHHHcC----C-----cceEEEEcCCHHHHHHHHhc
Confidence            467787776655443  556799999999999999888762    2     13689999999998876553

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=88.33  E-value=0.59  Score=40.77  Aligned_cols=42  Identities=7%  Similarity=-0.031  Sum_probs=32.1

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .-+|+|+|||+|+++..+...    ..      -+.+.||+|+...+.-+++
T Consensus       213 ~~~VLDl~cGtG~~sl~la~~----ga------~~V~~vD~s~~al~~A~~N  254 (385)
T 2b78_A          213 GKTVLNLFSYTAAFSVAAAMG----GA------MATTSVDLAKRSRALSLAH  254 (385)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT----TB------SEEEEEESCTTHHHHHHHH
T ss_pred             CCeEEEEeeccCHHHHHHHHC----CC------CEEEEEECCHHHHHHHHHH
Confidence            458999999999999877642    11      2689999999988865544

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=88.02  E-value=0.58  Score=40.56  Aligned_cols=43  Identities=12%  Similarity=0.003  Sum_probs=32.5

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..-+|+|+|||+|+++..+...   ..       .+.+.||+|+...+.-+++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~---g~-------~~v~~vD~s~~~l~~a~~n  259 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA---GA-------DEVIGIDKSPRAIETAKEN  259 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT---TC-------SEEEEEESCHHHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHC---CC-------CEEEEEeCCHHHHHHHHHH
Confidence            4458999999999999877653   11       2689999999887765443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=87.95  E-value=0.65  Score=38.97  Aligned_cols=44  Identities=11%  Similarity=0.021  Sum_probs=32.7

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..-+|+|+|||+|.++..+...    .|     ..+.+.||+||...+.-+++
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~----~~-----~~~V~avDi~~~al~~A~~N   64 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKN----QT-----ASFAIAGEVVDGPFQSAQKQ   64 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHT----TS-----EEEEEEEESSHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHh----CC-----CCEEEEEECCHHHHHHHHHH
Confidence            3468999999999998776442    33     23688999999988875443

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=87.68  E-value=1.2  Score=40.48  Aligned_cols=60  Identities=18%  Similarity=0.251  Sum_probs=37.8

Q ss_pred             cccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCC------chhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895          102 WFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGG------SGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG  175 (186)
Q Consensus       102 F~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG------~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~  175 (186)
                      -......|.++|.+.++..      ...+.+|+|||||      +|..+..++.   +..|     +.+++-||+|+.+.
T Consensus       195 K~~~~h~y~~~Ye~lL~~l------~~~~~rVLDIGCG~~~~~~TGG~Sl~la~---~~fP-----~a~V~GVDiSp~m~  260 (419)
T 3sso_A          195 KFGFLHWFTPHYDRHFRDY------RNQQVRVLEIGVGGYKHPEWGGGSLRMWK---SFFP-----RGQIYGLDIMDKSH  260 (419)
T ss_dssp             TBSSSCBCHHHHHHHHGGG------TTSCCEEEEECCSCTTCSSCCCHHHHHHH---HHCT-----TCEEEEEESSCCGG
T ss_pred             cccccchHHHHHHHHHHhh------cCCCCEEEEEecCCCcCCCCCHHHHHHHH---HhCC-----CCEEEEEECCHHHh
Confidence            3443344456676654432      2345799999999      6666655543   3334     34789999999874

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=87.07  E-value=0.73  Score=42.63  Aligned_cols=49  Identities=20%  Similarity=0.169  Sum_probs=37.5

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHh---CcccccccceEEEEecCcchHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLN---APERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~---~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      ...++|+|+|=|+|.++...+.++++.   +|..--.+++|+.+|.-|--.+
T Consensus        65 ~~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~  116 (676)
T 3ps9_A           65 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRA  116 (676)
T ss_dssp             SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHH
T ss_pred             CCceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHH
Confidence            456899999999999999999998653   4411235789999999664443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=86.94  E-value=0.8  Score=41.60  Aligned_cols=47  Identities=9%  Similarity=0.020  Sum_probs=35.6

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .....-+|+|+|||+|..+..+...+...        -+.+.||+|+...+.-++
T Consensus       102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~--------g~V~AvDis~~rl~~~~~  148 (456)
T 3m4x_A          102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGK--------GLLVTNEIFPKRAKILSE  148 (456)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTC--------SEEEEECSSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHcCCC--------CEEEEEeCCHHHHHHHHH
Confidence            44445699999999999999988876322        358899999987776433

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=86.94  E-value=0.17  Score=43.97  Aligned_cols=46  Identities=15%  Similarity=0.174  Sum_probs=36.7

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      +.+-+|+|+|||.|-|+.-+...    .     ...+|+.+|+++.+.+.-++++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~----~-----p~a~y~a~DId~~~le~a~~~l  176 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGL----P-----AETVYIASDIDARLVGFVDEAL  176 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTC----C-----TTCEEEEEESBHHHHHHHHHHH
T ss_pred             CCCceeeeeccCccHHHHHHHhh----C-----CCCEEEEEeCCHHHHHHHHHHH
Confidence            55779999999999999766542    2     3468999999999999866654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=86.72  E-value=0.54  Score=40.13  Aligned_cols=41  Identities=15%  Similarity=0.171  Sum_probs=31.2

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..-+|+|+|||+|.++.. +.    ..       .+.+.||+||...+.-+++
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~----~~-------~~V~~vD~s~~ai~~a~~n  235 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK----NA-------KKIYAIDINPHAIELLKKN  235 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT----TS-------SEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEccCccCHHHHh-cc----CC-------CEEEEEECCHHHHHHHHHH
Confidence            345899999999999876 54    12       3689999999888765443

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=86.71  E-value=0.88  Score=37.80  Aligned_cols=44  Identities=9%  Similarity=0.027  Sum_probs=32.7

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+|||+|.++..+...    .|     ..+.+.+|+||...+.-+++
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~----~~-----~~~V~AvDi~~~al~~A~~N   64 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQM----GY-----CDFAIAGEVVNGPYQSALKN   64 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHT----TC-----EEEEEEEESSHHHHHHHHHH
T ss_pred             CCCEEEEECCchHHHHHHHHHh----CC-----CCEEEEEECCHHHHHHHHHH
Confidence            3468999999999998876542    33     23678999999988875443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=86.35  E-value=0.88  Score=39.47  Aligned_cols=43  Identities=12%  Similarity=0.005  Sum_probs=32.7

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..-+|+|+|||+|+++..+...   ..       .+.+.||+|+...+.-+++
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~---g~-------~~V~~vD~s~~al~~a~~n  262 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMG---GC-------SQVVSVDTSQEALDIARQN  262 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHT---TC-------SEEEEEESCHHHHHHHHHH
T ss_pred             CCCeEEEeeccCCHHHHHHHHC---CC-------CEEEEEECCHHHHHHHHHH
Confidence            3458999999999999877652   11       2689999999888765544

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=85.99  E-value=0.75  Score=38.17  Aligned_cols=34  Identities=12%  Similarity=0.164  Sum_probs=26.1

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL  173 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~  173 (186)
                      ...+|+|+|||+|.++.-+...    .       .+.+.||+||.
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~----g-------~~V~~vD~s~~  116 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASL----G-------LTVTAFEQHPA  116 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHT----T-------CCEEEEECCHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHh----C-------CEEEEEECChh
Confidence            3458999999999998766542    2       25799999993

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=85.85  E-value=1  Score=40.94  Aligned_cols=44  Identities=7%  Similarity=0.145  Sum_probs=34.0

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..-+|+|+|||+|..+..+...+..        .-+.+.||+|+...+.-++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~--------~g~V~avDis~~~l~~~~~  160 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNN--------EGAILANEFSASRVKVLHA  160 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTT--------CSEEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHH
Confidence            4568999999999999998876522        2368999999988775433

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=85.29  E-value=2.3  Score=36.57  Aligned_cols=43  Identities=12%  Similarity=0.100  Sum_probs=31.9

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+| |+|.++..+...    .|     ..+.+.||+||.+.+.-+++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~----~~-----~~~v~~vDi~~~~l~~a~~~  214 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLS----GL-----PKRIAVLDIDERLTKFIEKA  214 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHH----TC-----CSEEEEECSCHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHh----CC-----CCEEEEEECCHHHHHHHHHH
Confidence            346899999 999999766432    22     23689999999988865444

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=85.07  E-value=1.2  Score=38.03  Aligned_cols=46  Identities=2%  Similarity=0.008  Sum_probs=34.9

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      .....-+|+|+|||+|..+..++..+...        -+.+.+|+|+...+.-+
T Consensus        99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~--------g~V~a~D~~~~~l~~~~  144 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNKTSHLAALLKNQ--------GKIFAFDLDAKRLASMA  144 (309)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTC--------SEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHhCCC--------CEEEEEeCCHHHHHHHH
Confidence            33444589999999999999988875321        36899999998776533

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=84.04  E-value=1.6  Score=36.56  Aligned_cols=36  Identities=11%  Similarity=0.019  Sum_probs=28.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      .+|+|+|||+|..+.-+...    .       .+.+.||+||.+.+.
T Consensus        90 ~~VLDl~~G~G~dal~lA~~----g-------~~V~~vE~~~~~~~l  125 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV----G-------CRVRMLERNPVVAAL  125 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH----T-------CCEEEEECCHHHHHH
T ss_pred             CEEEEcCCcCCHHHHHHHHc----C-------CEEEEEECCHHHHHH
Confidence            68999999999999877663    2       148999999976443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=83.00  E-value=1.2  Score=37.06  Aligned_cols=33  Identities=18%  Similarity=0.328  Sum_probs=24.6

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL  173 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~  173 (186)
                      ..-+|+|+|||+|.++.-+++.     .       +.+-||+||.
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~-----~-------~V~gvD~s~m  106 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR-----P-------HVMDVRAYTL  106 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS-----T-------TEEEEEEECC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc-----C-------cEEEEECchh
Confidence            3468999999999987655443     1       4778898883

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=82.76  E-value=2.1  Score=39.78  Aligned_cols=49  Identities=22%  Similarity=0.205  Sum_probs=37.6

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHh---CcccccccceEEEEecCcchHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLN---APERVYNNMTYISVEIQSLTGR  176 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~---~P~~~y~~l~Y~iVEiSp~L~~  176 (186)
                      ..+++|+|+|=|+|.+....++++++.   +|..--.+++|+.+|..|--++
T Consensus        57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~  108 (689)
T 3pvc_A           57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVA  108 (689)
T ss_dssp             SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHH
T ss_pred             CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHH
Confidence            456899999999999999999998653   4411234699999999884433

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=82.25  E-value=1.7  Score=38.43  Aligned_cols=41  Identities=7%  Similarity=-0.037  Sum_probs=32.1

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .-+|+|+|||+|.++..+...    ..       +.+.||+|+...+.-+++
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~----ga-------~V~avDis~~al~~a~~n  255 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK----GA-------YALAVDKDLEALGVLDQA  255 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT----TC-------EEEEEESCHHHHHHHHHH
T ss_pred             CCeEEEcccchhHHHHHHHHc----CC-------eEEEEECCHHHHHHHHHH
Confidence            458999999999999887652    22       378999999988765544

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=82.08  E-value=1.2  Score=37.37  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=24.8

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL  173 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~  173 (186)
                      ...+|+|+|||+|.++.-+++.     .       +.+-||+|+-
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~-----~-------~V~gVD~s~m  114 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ-----P-------NVREVKAYTL  114 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS-----T-------TEEEEEEECC
T ss_pred             CCCEEEEeccCCCHHHHHHHHc-----C-------CEEEEECchh
Confidence            3468999999999987665443     1       3778999883

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=81.52  E-value=2  Score=35.13  Aligned_cols=54  Identities=17%  Similarity=0.154  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ..|.+.+++.... ..-.|+|..||+||.+...+..    .       -+++.||++|...+.-++
T Consensus       199 ~~l~~~~i~~~~~-~~~~vlD~f~GsGtt~~~a~~~----g-------r~~ig~e~~~~~~~~~~~  252 (260)
T 1g60_A          199 RDLIERIIRASSN-PNDLVLDCFMGSGTTAIVAKKL----G-------RNFIGCDMNAEYVNQANF  252 (260)
T ss_dssp             HHHHHHHHHHHCC-TTCEEEESSCTTCHHHHHHHHT----T-------CEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CCCEEEECCCCCCHHHHHHHHc----C-------CeEEEEeCCHHHHHHHHH
Confidence            4566777776643 3348999999999999876553    1       268999999988876533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1zkda1	365	c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {	2e-04

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 365

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 27 QPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSR 67
          Q  L       I    P+ V  ++   L HP+HGY+  R  
Sbjct: 3  QTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRDP 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	100.0
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.62
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.58
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.44
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.39
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.37
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.31
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.21
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.2
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	97.2
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.13
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.11
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.1
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.1
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.07
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.04
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	97.0
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.93
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	96.92
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.92
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.89
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.88
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.86
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	96.77
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	96.76
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.76
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	96.76
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.74
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.71
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.6
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.56
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	96.49
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.46
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	96.44
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.38
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	96.34
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	96.3
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.23
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.16
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.04
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	96.03
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	95.93
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.8
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.74
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.7
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	95.68
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	95.52
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	95.5
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	95.49
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	95.4
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	95.33
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	94.95
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	94.91
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	94.9
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	94.83
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	94.79
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	94.56
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	94.51
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	94.51
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	94.5
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	94.11
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.0
d2h00a1	250	Methyltransferase 10 domain containing protein MET	93.99
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	93.5
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	93.15
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	92.63
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	92.28
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	92.15
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	91.72
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	91.7
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	91.44
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	91.35
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	90.88
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	90.75
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	90.35
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	89.6
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	89.33
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	88.58
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	87.28
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	86.78
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	86.68
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	86.34
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	86.14
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	84.54
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	84.52
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	84.03

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=100.00  E-value=5.3e-37  Score=269.15  Aligned_cols=124  Identities=22%  Similarity=0.343  Sum_probs=108.5

Q ss_pred             ChhHHHHHhhhhhCCCceeHHHHHHHhhcCCCCccccCCCccccCCCcccccccccChHHHHHHHHHHhhhcCCcccccc
Q 029895           27 QPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPV  106 (186)
Q Consensus        27 ~~~l~~~~~~~I~~~~~i~frdFM~~aLY~p~~GYY~~~~~~iG~~G~~~Df~~l~~~~~y~~~~~~~y~~~~~dF~Ts~  106 (186)
                      +.+|...|+++|..+|||+|++||+.|||||++|||++. .+||+.|                           ||+|||
T Consensus         3 ~~~L~~~i~~~i~~~G~i~f~~fM~~~LY~p~~GYY~~~-~~iG~~G---------------------------DF~Tsp   54 (365)
T d1zkda1           3 QTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTR-DPLGREG---------------------------DFTTSP   54 (365)
T ss_dssp             SSHHHHHHHHHHHHHCSEEHHHHHHHHHHCTTTCTTTCC------------------------------------CCSHH
T ss_pred             ccHHHHHHHHHHHhcCCccHHHHHHHHcCCCCccccCCC-CCCCCCC---------------------------CeECCC
Confidence            458999999999999999999999999999999999985 4899999                           699999


Q ss_pred             ccchHHHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          107 ELFKPWYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       107 eifsp~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      |+ ||+||++||+|+.+.|   +.+.+++|||+|||+|+||+|||++++ ..| +++.+++|++||+||.|++.|++.
T Consensus        55 ~i-s~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~-~~~-~~~~~~~~~~vE~s~~L~~~Q~~~  129 (365)
T d1zkda1          55 EI-SQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALR-VLP-ILYQSLSVHLVEINPVLRQKQQTL  129 (365)
T ss_dssp             HH-CHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHT-TSH-HHHTTEEEEEECCCHHHHHHHHHH
T ss_pred             ch-HHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhc-ccc-cccccceEEEeccchhHHHHHHHH
Confidence            99 9999999999999998   677889999999999999999999996 467 899999999999999999999763

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=5.2e-05  Score=60.66  Aligned_cols=47  Identities=21%  Similarity=0.273  Sum_probs=39.4

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      ...++|+|||||+|.++..|+..+.+..+ .  ..++++.||+|+.+.+.
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~-~--~~~~~~~vD~s~~~l~~   85 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYP-G--VCINNEVVEPSAEQIAK   85 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHST-T--CEEEEEEECCCHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhcc-C--CceEEEEEeCcHHHHHH
Confidence            44568999999999999999999987766 3  34678999999998775

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.58  E-value=2.9e-05  Score=59.71  Aligned_cols=70  Identities=11%  Similarity=0.097  Sum_probs=50.7

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .|.|++.+|++-.-..-++.+++.+.....-+|+|+|||+|.++..+.    +..+       +.+.||+|+...+.-++
T Consensus        24 ~~~t~~gvF~~~~~d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la----~~~~-------~v~~iD~s~~~i~~a~~   92 (194)
T d1dusa_          24 KFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALA----DEVK-------STTMADINRRAIKLAKE   92 (194)
T ss_dssp             EEEEETTSTTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHG----GGSS-------EEEEEESCHHHHHHHHH
T ss_pred             EEEcCCCccCCCCcCHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHH----hhcc-------ccceeeeccccchhHHH
Confidence            499999999875433335556666655556799999999999986543    3344       47889999998887554


Q ss_pred             h
Q 029895          181 N  181 (186)
Q Consensus       181 ~  181 (186)
                      +
T Consensus        93 n   93 (194)
T d1dusa_          93 N   93 (194)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.44  E-value=0.0004  Score=52.94  Aligned_cols=77  Identities=14%  Similarity=0.273  Sum_probs=46.7

Q ss_pred             HHHHHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceE
Q 029895           86 AYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTY  165 (186)
Q Consensus        86 ~y~~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y  165 (186)
                      +|...+++.|++.   +-++.   ....-+.+.+.+.+..  +.+.+|+|+|||+|.++..+.+    ..       .++
T Consensus         7 ~~yd~~a~~Yd~~---~~~~~---~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~----~~-------~~v   67 (246)
T d2avna1           7 EFYDRIARAYDSM---YETPK---WKLYHRLIGSFLEEYL--KNPCRVLDLGGGTGKWSLFLQE----RG-------FEV   67 (246)
T ss_dssp             HHHHHHHHHHGGG---GCSHH---HHHHHHHHHHHHHHHC--CSCCEEEEETCTTCHHHHHHHT----TT-------CEE
T ss_pred             HHHHHHHHHHHHH---hcccc---chHHHHHHHHHHHHhc--CCCCEEEEECCCCchhcccccc----cc-------eEE
Confidence            4545567888532   21111   1233333444333333  3455899999999999976632    22       268


Q ss_pred             EEEecCcchHHHHHHh
Q 029895          166 ISVEIQSLTGRDTERN  181 (186)
Q Consensus       166 ~iVEiSp~L~~~Q~~~  181 (186)
                      +.||+|+.+.+.-++.
T Consensus        68 ~giD~s~~~l~~a~~~   83 (246)
T d2avna1          68 VLVDPSKEMLEVAREK   83 (246)
T ss_dssp             EEEESCHHHHHHHHHH
T ss_pred             EEeecccccccccccc
Confidence            9999999998875443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.39  E-value=0.00016  Score=56.66  Aligned_cols=63  Identities=19%  Similarity=0.183  Sum_probs=43.8

Q ss_pred             ccccccccchHHHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      +|.||+++         |..++...   +.-...+|+|+|||+|.++...+.    ..+      .+.+.||+|+...+.
T Consensus        24 qy~Tp~~~---------a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~----~g~------~~v~~vdi~~~~~~~   84 (201)
T d1wy7a1          24 QYRTPGNA---------ASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALL----LGA------KEVICVEVDKEAVDV   84 (201)
T ss_dssp             CCCCCHHH---------HHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHH----TTC------SEEEEEESCHHHHHH
T ss_pred             cCCCCHHH---------HHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHH----cCC------CEEEEEcCcHHHHHH
Confidence            69999887         44444333   433456899999999999865432    122      257899999988887


Q ss_pred             HHHhc
Q 029895          178 TERNC  182 (186)
Q Consensus       178 Q~~~~  182 (186)
                      -++++
T Consensus        85 a~~N~   89 (201)
T d1wy7a1          85 LIENL   89 (201)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            66654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.37  E-value=0.00015  Score=58.68  Aligned_cols=54  Identities=24%  Similarity=0.327  Sum_probs=42.8

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +++.|++..+....-.|+|||||+|.|...+++.-    .       +++.||+++.+.+.-++.
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~----~-------~v~avE~D~~l~~~l~~~   62 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC----N-------FVTAIEIDHKLCKTTENK   62 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS----S-------EEEEECSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc----C-------ceEEEeeccchHHHHHHH
Confidence            46777777765666789999999999999998752    2       489999999999875543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.31  E-value=0.00031  Score=54.29  Aligned_cols=45  Identities=9%  Similarity=0.172  Sum_probs=33.6

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+.-+|+|+|||+|.++..+.+    ...       +++.||+|+.+.+.-++.
T Consensus        38 ~~~~~~~iLDiGcGtG~~~~~l~~----~~~-------~v~gvD~s~~mi~~a~~~   82 (251)
T d1wzna1          38 AKREVRRVLDLACGTGIPTLELAE----RGY-------EVVGLDLHEEMLRVARRK   82 (251)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHH----TTC-------EEEEEESCHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCCccchhhcc----cce-------EEEEEeeccccccccccc
Confidence            344456899999999999876554    222       589999999998875444

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00028  Score=58.71  Aligned_cols=53  Identities=19%  Similarity=0.328  Sum_probs=42.4

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +++.|++..+....-.|+|||||.|.|...+|+.    ..       +.+.||+.+.+.+.-++
T Consensus         9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~----~~-------~v~aiE~D~~l~~~L~~   61 (278)
T d1zq9a1           9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK----AK-------KVVACELDPRLVAELHK   61 (278)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH----SS-------EEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc----CC-------cEEEEEEccchhHHHHH
Confidence            3778888776656668999999999999999875    22       48899999999886433

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.20  E-value=0.00034  Score=53.26  Aligned_cols=70  Identities=14%  Similarity=0.072  Sum_probs=49.9

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +|.+-+.+++|--.+.-+. ++..+.+...-+|+|+|||+|.++..++.    ..+       +.+-||+||...+.-++
T Consensus         6 ~f~~~~~~~~~t~~eir~~-il~~l~~~~g~~VLDiGcGsG~~s~~lA~----~~~-------~V~avD~~~~~l~~a~~   73 (186)
T d1l3ia_           6 EFIKNPSVPGPTAMEVRCL-IMCLAEPGKNDVAVDVGCGTGGVTLELAG----RVR-------RVYAIDRNPEAISTTEM   73 (186)
T ss_dssp             GSCCCTTSCCCCCHHHHHH-HHHHHCCCTTCEEEEESCTTSHHHHHHHT----TSS-------EEEEEESCHHHHHHHHH
T ss_pred             hhccCCCCCCCChHHHHHH-HHHhcCCCCCCEEEEEECCeEcccccccc----cce-------EEEEecCCHHHHHHHHH
Confidence            5888888877777664443 33445666667999999999999865432    233       57889999999887655


Q ss_pred             hc
Q 029895          181 NC  182 (186)
Q Consensus       181 ~~  182 (186)
                      ++
T Consensus        74 n~   75 (186)
T d1l3ia_          74 NL   75 (186)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.20  E-value=0.00017  Score=55.93  Aligned_cols=62  Identities=19%  Similarity=0.273  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHh--CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          111 PWYAHGIAEAIMRTA--NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~--~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      |.|... .+.+....  ..+...+|+|+|||+|.++..+++.+.  .|     ..+++.||+|+.+.+.-++
T Consensus        20 P~Y~~~-~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~--~~-----~~~v~giD~S~~ml~~A~~   83 (225)
T d1im8a_          20 PGYSNI-ITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNIN--QP-----NVKIIGIDNSQPMVERCRQ   83 (225)
T ss_dssp             TTHHHH-HHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCC--CS-----SCEEEEECSCHHHHHHHHH
T ss_pred             CCHHHH-HHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhc--CC-----CCceEEeCCCHHHHHHHHH
Confidence            555543 33333332  123345899999999999988887532  23     4589999999999987544

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.13  E-value=0.00015  Score=59.18  Aligned_cols=57  Identities=23%  Similarity=0.339  Sum_probs=46.6

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      .|+....+         .+.|++..+....-.|+|||||+|.|...++..    ..       +++.||+++.|.+.
T Consensus        10 nFL~d~~i---------i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~----~~-------~v~aIE~D~~l~~~   66 (245)
T d1yuba_          10 NFLTSEKV---------LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI----SK-------QVTSIELDSHLFNL   66 (245)
T ss_dssp             CBCCCTTT---------HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH----SS-------EEEESSSSCSSSSS
T ss_pred             cccCCHHH---------HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh----cC-------ceeEeeecccchhh
Confidence            58888877         778888887666678999999999999988764    22       58899999998764

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.11  E-value=0.00067  Score=50.99  Aligned_cols=43  Identities=14%  Similarity=0.099  Sum_probs=32.0

Q ss_pred             CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +..-+|+|||||+|.++..+.    +..       .+++.||+|+.+.+.-++.
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la----~~~-------~~v~giD~S~~~i~~ak~~   78 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLE----DYG-------FEVVGVDISEDMIRKAREY   78 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHH----HTT-------CEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcchhhhhHh----hhh-------cccccccccccchhhhhhh
Confidence            344589999999999987554    222       2689999999998874443

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.10  E-value=0.00046  Score=56.59  Aligned_cols=70  Identities=13%  Similarity=0.106  Sum_probs=52.4

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      .++||..+ ..    .++..+..........+|+|.+||+|.++..+++++.+...    ...+.+-+|+++.+.+..+
T Consensus        94 ~~~TP~~i-~~----~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~----~~~~~~g~di~~~~~~~a~  163 (328)
T d2f8la1          94 HQMTPDSI-GF----IVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGD----VDVHASGVDVDDLLISLAL  163 (328)
T ss_dssp             GCCCCHHH-HH----HHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSS----CEEEEEEEESCHHHHHHHH
T ss_pred             eEECcHHH-HH----HHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccC----ccceEEEecccHHHHHHHH
Confidence            47899877 33    34544444455666789999999999999999999977542    3457888999998877643

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00018  Score=60.41  Aligned_cols=67  Identities=15%  Similarity=0.118  Sum_probs=49.8

Q ss_pred             hhcCCccccccccchHHHHHHHHHHHHHHhC------CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEe
Q 029895           96 KQSEISWFTPVELFKPWYAHGIAEAIMRTAN------LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVE  169 (186)
Q Consensus        96 ~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~------~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVE  169 (186)
                      +...+.|++.+.+         +..|++..+      .+.+..|+|||||.|.|...+|+..   .| .     +++.||
T Consensus        13 k~~GQnfL~d~~i---------~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~---~~-~-----~v~~iE   74 (322)
T d1i4wa_          13 FFYGFKYLWNPTV---------YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY---CP-R-----QYSLLE   74 (322)
T ss_dssp             CGGGCCCBCCHHH---------HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH---CC-S-----EEEEEC
T ss_pred             hhccccccCCHHH---------HHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcC---CC-C-----EEEEEE
Confidence            3344469988877         566666552      3456789999999999999999985   23 1     589999


Q ss_pred             cCcchHHHHHH
Q 029895          170 IQSLTGRDTER  180 (186)
Q Consensus       170 iSp~L~~~Q~~  180 (186)
                      +.+.+.+.-++
T Consensus        75 ~D~~~~~~L~~   85 (322)
T d1i4wa_          75 KRSSLYKFLNA   85 (322)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999886433

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.07  E-value=0.00043  Score=54.77  Aligned_cols=63  Identities=19%  Similarity=0.225  Sum_probs=42.6

Q ss_pred             ccccccccchHHHHHHHHHHHH---HHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIM---RTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~---~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      +|.||+++         |..++   ...+.-..-+|+|+|||+|.|+...+    ...+      .+.+.||+++...+.
T Consensus        26 Qy~T~~~~---------a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~----~~ga------~~V~~vDid~~a~~~   86 (197)
T d1ne2a_          26 QYPTDAST---------AAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSY----LLGA------ESVTAFDIDPDAIET   86 (197)
T ss_dssp             -CCCCHHH---------HHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHH----HTTB------SEEEEEESCHHHHHH
T ss_pred             cCCCCHHH---------HHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHH----HcCC------CcccccccCHHHHHH
Confidence            79999999         33332   22233345699999999999874322    2222      258999999999888


Q ss_pred             HHHhc
Q 029895          178 TERNC  182 (186)
Q Consensus       178 Q~~~~  182 (186)
                      -++++
T Consensus        87 ar~N~   91 (197)
T d1ne2a_          87 AKRNC   91 (197)
T ss_dssp             HHHHC
T ss_pred             HHHcc
Confidence            77765

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00019  Score=58.76  Aligned_cols=53  Identities=15%  Similarity=0.178  Sum_probs=41.6

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +++.|++..+....-.|+|||||.|.|...+++.    ..       +++.||+.+.|.+.-++
T Consensus         9 ~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~----~~-------~v~aiEiD~~l~~~L~~   61 (252)
T d1qyra_           9 VIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER----LD-------QLTVIELDRDLAARLQT   61 (252)
T ss_dssp             HHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT----CS-------CEEEECCCHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc----CC-------ceEEEEeccchhHHHHH
Confidence            3677777776655668999999999999998874    21       48999999999886543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=97.00  E-value=0.00017  Score=58.46  Aligned_cols=57  Identities=16%  Similarity=0.275  Sum_probs=40.5

Q ss_pred             HHHHHHH-hCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          118 AEAIMRT-ANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       118 A~~i~~~-~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ..++++. +....+.+|+|+|||+|.++..+...+    |    ...+++.||+|+.+.+.-++.+
T Consensus        15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~----~----~~~~v~giD~s~~~l~~a~~~~   72 (281)
T d2gh1a1          15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLL----P----EGSKYTGIDSGETLLAEARELF   72 (281)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTS----C----TTCEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhC----C----CCCEEEEEecchhHhhhhhccc
Confidence            3444443 356678899999999999998766543    2    1246899999999887654443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0018  Score=50.21  Aligned_cols=73  Identities=11%  Similarity=0.084  Sum_probs=52.1

Q ss_pred             HHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEE
Q 029895           89 KHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISV  168 (186)
Q Consensus        89 ~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iV  168 (186)
                      ..++++|++.+..|... +. .|.+    ..++.+....+...+|+++|||+|.++.-+.+    ..-       +.+-|
T Consensus        11 e~W~~~~~~~~~~w~~~-~~-~~~l----~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~----~G~-------~V~gv   73 (229)
T d2bzga1          11 EEWQDKWVNGKTAFHQE-QG-HQLL----KKHLDTFLKGKSGLRVFFPLCGKAVEMKWFAD----RGH-------SVVGV   73 (229)
T ss_dssp             HHHHHHHHHTCCTTCCT-TC-CHHH----HHHHHHHHTTCCSCEEEETTCTTCTHHHHHHH----TTC-------EEEEE
T ss_pred             HHHHHHHccCCCCCccC-CC-CHHH----HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHh----CCC-------cEEEE
Confidence            35788899988777443 34 5655    44555555666677999999999999876644    332       57999


Q ss_pred             ecCcchHHHH
Q 029895          169 EIQSLTGRDT  178 (186)
Q Consensus       169 EiSp~L~~~Q  178 (186)
                      |+|+...++.
T Consensus        74 D~S~~ai~~a   83 (229)
T d2bzga1          74 EISELGIQEF   83 (229)
T ss_dssp             CSCHHHHHHH
T ss_pred             eCCHHHHHHH
Confidence            9999888753

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.92  E-value=0.00047  Score=52.30  Aligned_cols=59  Identities=15%  Similarity=0.142  Sum_probs=43.8

Q ss_pred             ccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          103 FTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       103 ~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      +||.+|         +..|++....+..-+|+|.|||+|.+...+.+...        ....++.+|+++...+.+
T Consensus         2 ~TP~~i---------~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~--------~~~~i~g~ei~~~~~~~~   60 (223)
T d2ih2a1           2 ETPPEV---------VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHG--------TAYRFVGVEIDPKALDLP   60 (223)
T ss_dssp             CCCHHH---------HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHC--------SCSEEEEEESCTTTCCCC
T ss_pred             CCCHHH---------HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhcc--------ccceEEeeecCHHHHhhc
Confidence            477766         77777777666667999999999999877665542        224688999999876543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.0013  Score=52.81  Aligned_cols=51  Identities=8%  Similarity=0.085  Sum_probs=35.8

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .|+...++....-+|+|+|||+|.++..+.+.    .       .+.+-||+|+.+.+.-++
T Consensus        46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~----g-------~~v~gvD~S~~ml~~A~~   96 (292)
T d1xvaa_          46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE----G-------FSVTSVDASDKMLKYALK   96 (292)
T ss_dssp             HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT----T-------CEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc----C-------CeeeeccCchHHHHHHHH
Confidence            34444443334458999999999998877542    2       258999999998776433

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.89  E-value=0.0012  Score=52.62  Aligned_cols=53  Identities=19%  Similarity=0.291  Sum_probs=37.6

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      ++..+......+...+|+|||||+|.++..+.+..   .       .+.+.||+||.+.+.-+
T Consensus        55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~---~-------~~v~gvD~s~~~i~~a~  107 (282)
T d2o57a1          55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF---G-------VSIDCLNIAPVQNKRNE  107 (282)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH---C-------CEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC---C-------cEEEEEeccchhhhhhh
Confidence            44444444455667799999999999988765432   2       25789999999876543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.88  E-value=0.00092  Score=50.91  Aligned_cols=48  Identities=13%  Similarity=0.207  Sum_probs=34.8

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +++..+....-+|+|||||+|.++..+++    ...       +++.||+|+.+.+.-+
T Consensus         7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~----~~~-------~v~gvD~s~~~i~~A~   54 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATGGGHVANAFAP----FVK-------KVVAFDLTEDILKVAR   54 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGG----GSS-------EEEEEESCHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEecccCcHHHHHHHH----hCC-------EEEEEECCHHHHhhhh
Confidence            34445555566999999999999876543    222       5889999999877643

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.86  E-value=0.0023  Score=48.34  Aligned_cols=40  Identities=15%  Similarity=0.193  Sum_probs=30.4

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      .+-+|+|+|||+|.++.-+.    +...       +++.||+|+.+.+.-+
T Consensus        30 ~~grvLDiGcG~G~~~~~la----~~g~-------~v~gvD~s~~~l~~a~   69 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLA----ANGY-------DVTAWDKNPASMANLE   69 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHH----HTTC-------EEEEEESCHHHHHHHH
T ss_pred             CCCcEEEECCCCCHHHHHHH----HHhh-------hhccccCcHHHHHHHH
Confidence            34589999999999997554    3333       5789999998777543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=96.77  E-value=0.0009  Score=54.74  Aligned_cols=57  Identities=16%  Similarity=0.082  Sum_probs=45.5

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      -+.+|+...+....-+|+|+|||+|.++..+++.+...        .+.+-+|+|+.+.+.-+++
T Consensus        91 d~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~--------G~V~~vD~~~~~~~~A~~~  147 (266)
T d1o54a_          91 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSS--------GKVFAYEKREEFAKLAESN  147 (266)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTT--------CEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCC--------cEEEEEeCCHHHHHHHHHH
Confidence            46677777777777799999999999999998876432        3688999999998875544

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0012  Score=50.97  Aligned_cols=44  Identities=14%  Similarity=-0.022  Sum_probs=33.0

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .....+|+|+|||+|.++..++.-    .+      .+++.||+|+.+.+..++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~----~~------~~v~~vD~s~~~l~~ak~  101 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLP----LF------REVDMVDITEDFLVQAKT  101 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTT----TC------SEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHh----cC------CEEEEeecCHHHhhcccc
Confidence            445578999999999988777432    12      268999999999876544

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.76  E-value=0.0014  Score=47.75  Aligned_cols=47  Identities=6%  Similarity=-0.051  Sum_probs=36.0

Q ss_pred             hCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          125 ANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       125 ~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      +..+...+|+|+|||+|.+|.-+.+    ..       .+.+-||+|+.+.+.-++.+
T Consensus        16 l~~~~~~rvLd~GCG~G~~a~~la~----~G-------~~V~gvD~S~~~i~~a~~~~   62 (201)
T d1pjza_          16 LNVVPGARVLVPLCGKSQDMSWLSG----QG-------YHVVGAELSEAAVERYFTER   62 (201)
T ss_dssp             HCCCTTCEEEETTTCCSHHHHHHHH----HC-------CEEEEEEECHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHH----cC-------CceEeecccHHHHHHHHHHh
Confidence            3566677999999999998875544    23       25899999999999865543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.76  E-value=0.00066  Score=55.40  Aligned_cols=55  Identities=22%  Similarity=0.184  Sum_probs=39.3

Q ss_pred             HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      +|+...+....-+|+|+|||+|.++..+++.+...        -+++.+|+|+...+.-++++
T Consensus        76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~--------g~V~~vD~~e~~~~~A~~n~  130 (250)
T d1yb2a1          76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGK--------GTLTVVERDEDNLKKAMDNL  130 (250)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTS--------SEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCC--------cEEEEEECCHHHHHHHHHHH
Confidence            34444444455699999999999999999987432        25889999999888765543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0013  Score=51.36  Aligned_cols=54  Identities=19%  Similarity=0.257  Sum_probs=38.7

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      -.+.+....+....-+|+|||||+|.++..+.+    ..+      ++.+-||+|+.+.+.-++
T Consensus        21 ~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~----~~~------~~v~GvD~s~~~~~~ar~   74 (245)
T d1nkva_          21 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWAR----DHG------ITGTGIDMSSLFTAQAKR   74 (245)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHH----HTC------CEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHH----hcC------CEEEEEecccchhhHHHH
Confidence            344566676655567999999999998875443    222      467899999998876433

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.71  E-value=0.0013  Score=54.13  Aligned_cols=57  Identities=21%  Similarity=0.248  Sum_probs=44.8

Q ss_pred             HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      -+.+|+...+.....+|+|+|||+|.++..+.+.+...        -+.+-+|+++.+.+.-+++
T Consensus        84 D~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~--------G~V~~~d~~~~~~~~Ar~n  140 (264)
T d1i9ga_          84 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPA--------GQVISYEQRADHAEHARRN  140 (264)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTT--------SEEEEECSCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCC--------cEEEEecCCHHHHHHHHHh
Confidence            34566666666666799999999999999999987433        3588899999998876554

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.60  E-value=0.0021  Score=49.86  Aligned_cols=50  Identities=12%  Similarity=0.159  Sum_probs=34.9

Q ss_pred             HHHHHHHh--CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          118 AEAIMRTA--NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       118 A~~i~~~~--~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      +.++.+..  ..+.+.+|+|+|||+|.++..+.+    ...       +++-||.|+.+.+.-
T Consensus        24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~----~g~-------~v~GvD~S~~ml~~A   75 (246)
T d1y8ca_          24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCP----KFK-------NTWAVDLSQEMLSEA   75 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGG----GSS-------EEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHH----hCC-------ccEeeccchhhhhhc
Confidence            44554544  234456899999999998775542    232       588999999987753

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.56  E-value=0.0014  Score=50.68  Aligned_cols=46  Identities=22%  Similarity=0.357  Sum_probs=33.8

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      +++.......-+|+|+|||+|.++..+.+.    ..       +++-||+|+.+.+.
T Consensus         8 l~~~~~~~~~~rILDiGcGtG~~~~~la~~----~~-------~v~gvD~S~~~l~~   53 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGAGHTALAFSPY----VQ-------ECIGVDATKEMVEV   53 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTTSHHHHHHGGG----SS-------EEEEEESCHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCcCcHHHHHHHHh----CC-------eEEEEeCChhhhhh
Confidence            445555444558999999999998766542    22       57899999998765

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.49  E-value=0.0027  Score=49.63  Aligned_cols=53  Identities=26%  Similarity=0.299  Sum_probs=39.8

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +++.++....-+|+|+|||+|.++.-+......        ..+.+.||+++.+.+..+++
T Consensus        67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~--------~g~V~~id~~~~~~~~a~~~  119 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGE--------KGLVVSVEYSRKICEIAKRN  119 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCT--------TCEEEEEESCHHHHHHHHHH
T ss_pred             HHHhhhccccceEEEecCccchhHHHHHHHhCC--------CCcEEEeecchhhHHHhhhh
Confidence            455666666679999999999999876665432        23688999999999876543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0014  Score=51.31  Aligned_cols=44  Identities=14%  Similarity=0.009  Sum_probs=33.7

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ..-+|+|||||+|.+|..|++    ..+      .+++.||+||.+.+.-++.+
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~----~~~------~~v~~id~s~~~~~~a~~~~   96 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQE----API------DEHWIIECNDGVFQRLRDWA   96 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHT----SCE------EEEEEEECCHHHHHHHHHHG
T ss_pred             CCCeEEEeeccchHHHHHHHH----cCC------CeEEEeCCCHHHHHHHHHHh
Confidence            345899999999998876654    233      26899999999988765544

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=96.44  E-value=0.0019  Score=51.61  Aligned_cols=52  Identities=13%  Similarity=0.122  Sum_probs=38.5

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +.+++.+......+|+|+|||+|.++..+|.-.   .  .     +++.||+|+.+.+.-++
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~---~--~-----~v~~vD~s~~~l~~a~~  134 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL---Y--A-----TTDLLEPVKHMLEEAKR  134 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH---C--S-----EEEEEESCHHHHHHHHH
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhc---C--c-----eEEEEcCCHHHHHhhhc
Confidence            444555555566799999999999999887632   1  1     47899999999886443

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.38  E-value=0.0058  Score=48.50  Aligned_cols=69  Identities=20%  Similarity=0.251  Sum_probs=48.2

Q ss_pred             ccccccccchHHHHHHHHHHHHHHh--CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTA--NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~--~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .++.+|.+        .|+ +++.+  .....-+|+|||+|+|.++.-+...+....   +....+.+.||+++.+.+.-
T Consensus        59 ~~is~P~~--------~a~-~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g---~~~~~~V~~iE~~~~l~~~a  126 (223)
T d1r18a_          59 VTISAPHM--------HAF-ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKG---VDADTRIVGIEHQAELVRRS  126 (223)
T ss_dssp             EEECCHHH--------HHH-HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSC---CCTTCEEEEEESCHHHHHHH
T ss_pred             ceeehhhh--------HHH-HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhcc---CCcccEEEEEecCHHHHHHH
Confidence            37777655        343 33443  334456999999999999998888776543   23445788999999998875


Q ss_pred             HHh
Q 029895          179 ERN  181 (186)
Q Consensus       179 ~~~  181 (186)
                      +++
T Consensus       127 ~~~  129 (223)
T d1r18a_         127 KAN  129 (223)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.003  Score=49.97  Aligned_cols=64  Identities=16%  Similarity=0.138  Sum_probs=43.2

Q ss_pred             ccccccccchHHHHHHHHHHHHHHh--CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTA--NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~--~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .++++|.+        +| .+++.+  .....-+|+|+|||+|.++.-+......        .-+.+.||+++.+.+.-
T Consensus        55 ~~is~P~~--------~a-~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~--------~g~V~~ie~~~~l~~~a  117 (224)
T d1i1na_          55 ATISAPHM--------HA-YALELLFDQLHEGAKALDVGSGSGILTACFARMVGC--------TGKVIGIDHIKELVDDS  117 (224)
T ss_dssp             EEECCHHH--------HH-HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCT--------TCEEEEEESCHHHHHHH
T ss_pred             hhhhhhHH--------HH-HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCC--------CceEEEEcCCHHHHHHH
Confidence            37777655        33 444444  3344569999999999998766554422        12588999999998875


Q ss_pred             HHh
Q 029895          179 ERN  181 (186)
Q Consensus       179 ~~~  181 (186)
                      +++
T Consensus       118 ~~~  120 (224)
T d1i1na_         118 VNN  120 (224)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=96.30  E-value=0.0026  Score=49.04  Aligned_cols=50  Identities=14%  Similarity=0.125  Sum_probs=33.7

Q ss_pred             HHHHHHh-CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          119 EAIMRTA-NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       119 ~~i~~~~-~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      .++++.+ ....+-+|+|||||+|.++..+    .+...       +++.||+|+.+.+..+
T Consensus         9 ~~~~~~~~~~~~~~~VLDiGcG~G~~~~~l----~~~g~-------~v~giD~s~~~i~~a~   59 (225)
T d2p7ia1           9 PFMVRAFTPFFRPGNLLELGSFKGDFTSRL----QEHFN-------DITCVEASEEAISHAQ   59 (225)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHH----TTTCS-------CEEEEESCHHHHHHHH
T ss_pred             HHHHHHhhhhCCCCcEEEEeCCCcHHHHHH----HHcCC-------eEEEEeCcHHHhhhhh
Confidence            3444444 2233457999999999998753    22232       4899999998887643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0034  Score=52.77  Aligned_cols=55  Identities=16%  Similarity=0.175  Sum_probs=42.8

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      +.+|+..++....-+|+|+|||+|.++..+.+.+....        +.+-+|+++.+.+.-++
T Consensus        87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G--------~V~t~E~~~~~~~~A~~  141 (324)
T d2b25a1          87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQG--------RVISFEVRKDHHDLAKK  141 (324)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTC--------EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCc--------EEEEecCCHHHHHHHHH
Confidence            44666666655667999999999999999999874332        57889999999887544

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.16  E-value=0.0056  Score=52.18  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhhhc---CCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccc--
Q 029895           85 KAYMKHVDKIYKQS---EISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERV--  159 (186)
Q Consensus        85 ~~y~~~~~~~y~~~---~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~--  159 (186)
                      +.|+..+.+.-+..   ...|+||.+|         ++.|++...+....+|+|-.||+|.+...+++++++... +.  
T Consensus       124 ~~yE~ll~~~~~~~~k~~G~f~TP~~I---------v~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~-~~~~  193 (425)
T d2okca1         124 AIYESILEKNGQDKKSGAGQYFTPRPL---------IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSA-SKEK  193 (425)
T ss_dssp             HHHHHHHHHHHTCTTTCCGGGCCCHHH---------HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC--CCHH
T ss_pred             HHHHHHHHHHHHhhhccchhhccchhh---------hHhhheeccCcccceeeccccccCccHHHHHHHHHhhcc-chhh
Confidence            44666665543221   1369999987         677777777666679999999999999999999987653 21  


Q ss_pred             ---cccceEEEEecCcchHHHHH
Q 029895          160 ---YNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       160 ---y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                         .......-+|+++......+
T Consensus       194 ~~~~~~~~l~g~E~~~~~~~la~  216 (425)
T d2okca1         194 RDFLRDKALHGVDNTPLVVTLAS  216 (425)
T ss_dssp             HHHHHHTTEEEEESCHHHHHHHH
T ss_pred             hhhhhhhhhhhhhccHHHHHHHH
Confidence               12345889999998887654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.04  E-value=0.0039  Score=49.78  Aligned_cols=57  Identities=21%  Similarity=0.210  Sum_probs=41.2

Q ss_pred             HHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          117 IAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       117 lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ||..|+.-.   .....-+|+|+|||+|+++..+.+..-...        +.+-||+||.+.+.-++.
T Consensus        58 laa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G--------~V~aVD~s~~~l~~a~~~  117 (227)
T d1g8aa_          58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEG--------KIFGIEFSPRVLRELVPI  117 (227)
T ss_dssp             HHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTS--------EEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCC--------EEEEEeCcHHHHHHHHHH
Confidence            444554433   334456999999999999999999874333        478899999987765443

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.03  E-value=0.0044  Score=49.32  Aligned_cols=46  Identities=20%  Similarity=0.200  Sum_probs=35.1

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ....-+|+|+|||+|+.+..+.+..    | +    -+.+-||+||.+.+.-++.
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~----~-~----g~V~aVDiS~~~i~~a~~~  117 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIA----D-K----GIVYAIEYAPRIMRELLDA  117 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHT----T-T----SEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhC----C-C----CEEEEEeCcHHHHHHHHHH
Confidence            3445699999999999999998853    3 1    2688999999887754443

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.93  E-value=0.0095  Score=47.15  Aligned_cols=62  Identities=24%  Similarity=0.300  Sum_probs=43.5

Q ss_pred             ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .++.+|.+        +| .|++.++....-+|+|||+|+|.++. +|..+-.  .       +.+.||+++.|.+..++
T Consensus        59 ~~is~P~~--------~a-~ml~~L~l~~g~~VLeIGsGsGY~ta-ila~l~g--~-------~V~~ie~~~~l~~~a~~  119 (215)
T d1jg1a_          59 QTVSAPHM--------VA-IMLEIANLKPGMNILEVGTGSGWNAA-LISEIVK--T-------DVYTIERIPELVEFAKR  119 (215)
T ss_dssp             CEECCHHH--------HH-HHHHHHTCCTTCCEEEECCTTSHHHH-HHHHHHC--S-------CEEEEESCHHHHHHHHH
T ss_pred             hhhhhhhh--------HH-HHHHhhccCccceEEEecCCCChhHH-HHHHhhC--c-------eeEEEeccHHHHHHHHH
Confidence            37776654        33 34455555556699999999999997 5555532  2       36889999999997654


Q ss_pred             h
Q 029895          181 N  181 (186)
Q Consensus       181 ~  181 (186)
                      +
T Consensus       120 ~  120 (215)
T d1jg1a_         120 N  120 (215)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.80  E-value=0.0062  Score=47.57  Aligned_cols=43  Identities=19%  Similarity=0.189  Sum_probs=33.4

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ....-+|+|+|||+|+.+..+.+..    |     ..+++-||+||.+.+.-
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v----~-----~g~V~gvDis~~~i~~a   96 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIV----D-----EGIIYAVEYSAKPFEKL   96 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHT----T-----TSEEEEECCCHHHHHHH
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhc----c-----CCeEEEEeCCHHHHHHH
Confidence            3344699999999999999887764    3     12689999999887753

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0074  Score=52.99  Aligned_cols=70  Identities=16%  Similarity=0.185  Sum_probs=53.9

Q ss_pred             CccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccc----------cceEEEEe
Q 029895          100 ISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYN----------NMTYISVE  169 (186)
Q Consensus       100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~----------~l~Y~iVE  169 (186)
                      ..||||.+|         ++.|+++..+....+|+|-.||+|.+.....+++++... +...          ...++-+|
T Consensus       144 GqfyTP~~I---------v~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~G~E  213 (524)
T d2ar0a1         144 GQYFTPRPL---------IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTN-DLDDLDGDTQDFQIHRAFIGLE  213 (524)
T ss_dssp             -CCCCCHHH---------HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTT-TTTTSCHHHHHHHHHTSEEEEE
T ss_pred             chhccccch---------hHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcC-cccccchhHHHHHHHhhhhhhc
Confidence            369999988         567777776666679999999999999999999987654 3221          23578899


Q ss_pred             cCcchHHHHH
Q 029895          170 IQSLTGRDTE  179 (186)
Q Consensus       170 iSp~L~~~Q~  179 (186)
                      +++......+
T Consensus       214 ~~~~~~~la~  223 (524)
T d2ar0a1         214 LVPGTRRLAL  223 (524)
T ss_dssp             SCHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence            9998877643

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.70  E-value=0.0036  Score=54.41  Aligned_cols=58  Identities=16%  Similarity=0.133  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          112 WYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       112 ~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      +|||++-..+.+++   +....-+|+|+|||.|.++..+....    +     .-+.+-||+|+.+.+.-
T Consensus       196 vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~----g-----~~~v~GIDiS~~~i~~A  256 (406)
T d1u2za_         196 VYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC----G-----CALSFGCEIMDDASDLT  256 (406)
T ss_dssp             CCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH----C-----CSEEEEEECCHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHc----C-----CCeEEEEeCCHHHHHHH
Confidence            57777776666655   44455689999999999998776653    2     12578999999987764

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.011  Score=47.01  Aligned_cols=55  Identities=15%  Similarity=0.312  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .+.++..+...+ +..+.+|+|+|||+|.++..+.+..    |     ..+++-||+|+.+.+.-
T Consensus        70 ~~~~~~~l~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~----~-----~~~~~giD~s~~~~~~a  124 (268)
T d1p91a_          70 RDAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADAL----P-----EITTFGLDVSKVAIKAA  124 (268)
T ss_dssp             HHHHHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTC----T-----TSEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHC----C-----CCEEEEecchHhhhhhh
Confidence            444555555544 3455699999999999988776543    3     24688999999987763

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0048  Score=47.47  Aligned_cols=44  Identities=9%  Similarity=0.019  Sum_probs=30.1

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .....+|+|+|||+|.++.-    +....      .-+++-||+|+.+.+.-++
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~----~~~~~------~~~v~giD~S~~~i~~a~~   92 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVL----AACDS------FQDITLSDFTDRNREELEK   92 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGT----TGGGT------EEEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHH----Hhccc------cCcEEEecCCHHHHHHHHH
Confidence            34456899999999987531    11111      1268999999999886433

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.50  E-value=0.012  Score=46.76  Aligned_cols=51  Identities=24%  Similarity=0.285  Sum_probs=37.6

Q ss_pred             HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      .|++.+.....-+|+|||||+|.++. +|..+   ..       +.+.||+++.+.+.-+++
T Consensus        61 ~ml~~L~l~~g~~VLdIG~GsGy~ta-~La~l---~~-------~V~aiE~~~~~~~~A~~~  111 (224)
T d1vbfa_          61 FMLDELDLHKGQKVLEIGTGIGYYTA-LIAEI---VD-------KVVSVEINEKMYNYASKL  111 (224)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHH-HHHHH---SS-------EEEEEESCHHHHHHHHHH
T ss_pred             HHHHHhhhcccceEEEecCCCCHHHH-HHHHH---hc-------ccccccccHHHHHHHHHH
Confidence            35566665556699999999999986 55444   22       467899999999975544

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=95.49  E-value=0.016  Score=45.49  Aligned_cols=51  Identities=18%  Similarity=0.328  Sum_probs=35.3

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ..++..+.....-+|+|||||+|.++..+++.    .|     .++.+.+|+++.+....
T Consensus        70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~----~p-----~~~~~~~D~~~~~~~a~  120 (253)
T d1tw3a2          70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARR----AP-----HVSATVLEMAGTVDTAR  120 (253)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHH----CT-----TCEEEEEECTTHHHHHH
T ss_pred             HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHh----cc-----eeEEEEccCHHHHHHHH
Confidence            34444544455569999999999999888754    45     35788899865554433

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=95.40  E-value=0.023  Score=45.79  Aligned_cols=54  Identities=22%  Similarity=0.231  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ++.+++.....  ..-+|+|+|||+|.++..    +.+...       +.+-||+||...+.-++++
T Consensus       109 l~l~~l~~~~~--~g~~VLDiGcGsG~l~i~----aa~~g~-------~V~gvDis~~av~~A~~na  162 (254)
T d2nxca1         109 LALKALARHLR--PGDKVLDLGTGSGVLAIA----AEKLGG-------KALGVDIDPMVLPQAEANA  162 (254)
T ss_dssp             HHHHHHHHHCC--TTCEEEEETCTTSHHHHH----HHHTTC-------EEEEEESCGGGHHHHHHHH
T ss_pred             HHHHHHHhhcC--ccCEEEEcccchhHHHHH----HHhcCC-------EEEEEECChHHHHHHHHHH
Confidence            44444443332  234899999999998853    233333       5789999999988765543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.33  E-value=0.012  Score=46.11  Aligned_cols=62  Identities=13%  Similarity=0.138  Sum_probs=47.0

Q ss_pred             cccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          106 VELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       106 ~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .++ +|--|+.|...+...    .+-+|+|+|+|+|.-+.-+++.+.+        .-+.+.||++|...+..++
T Consensus        38 m~i-~~~~G~lL~~lv~~~----kpk~ILEiGt~~G~Sti~la~al~~--------~g~v~sid~~~~~~~~a~~   99 (214)
T d2cl5a1          38 MNV-GDAKGQIMDAVIREY----SPSLVLELGAYCGYSAVRMARLLQP--------GARLLTMEMNPDYAAITQQ   99 (214)
T ss_dssp             CSC-HHHHHHHHHHHHHHH----CCSEEEEECCTTSHHHHHHHTTCCT--------TCEEEEEESCHHHHHHHHH
T ss_pred             ccc-CHHHHHHHHHHHHhh----CCCEEEEEccCchhHHHHHHHhCCC--------ccEEEEEeccHHHHHHHHH
Confidence            456 899998887766544    3569999999999999877665522        3478999999998887544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.95  E-value=0.02  Score=46.45  Aligned_cols=49  Identities=16%  Similarity=0.289  Sum_probs=34.9

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +++.++....-+|+|||||.|.+|.-+.+..    +      ++.+-|++|+...+.-+
T Consensus        44 ~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~----g------~~v~gi~ls~~q~~~a~   92 (280)
T d2fk8a1          44 NLDKLDLKPGMTLLDIGCGWGTTMRRAVERF----D------VNVIGLTLSKNQHARCE   92 (280)
T ss_dssp             HHTTSCCCTTCEEEEESCTTSHHHHHHHHHH----C------CEEEEEESCHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHhC----c------eeEEEecchHHHHHHHH
Confidence            3334455556799999999999886654331    2      37899999999887643

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=94.91  E-value=0.028  Score=42.18  Aligned_cols=56  Identities=13%  Similarity=-0.019  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      =|+|.+++....  +..-+|+|+|||+|.++..   .+.. ..       +.+.||+|+...+..+++.
T Consensus        28 ~e~lf~~l~~~~--~~g~~vLDl~~G~G~~~i~---a~~~-ga-------~vv~vD~~~~a~~~~~~N~   83 (171)
T d1ws6a1          28 RKALFDYLRLRY--PRRGRFLDPFAGSGAVGLE---AASE-GW-------EAVLVEKDPEAVRLLKENV   83 (171)
T ss_dssp             HHHHHHHHHHHC--TTCCEEEEETCSSCHHHHH---HHHT-TC-------EEEEECCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhccc--cCCCeEEEeccccchhhhh---hhhc-cc-------hhhhcccCHHHHhhhhHHH
Confidence            356666665544  3345899999999998743   3322 22       4567999999998765543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.032  Score=45.98  Aligned_cols=52  Identities=13%  Similarity=0.176  Sum_probs=36.9

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      ..+++..+....-+|+|+|||+|.++..+...    .+     ..+.+-||+|+.+.+..+
T Consensus       141 ~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~----~~-----~~~~~Gid~s~~~~~~a~  192 (328)
T d1nw3a_         141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAA----TN-----CKHHYGVEKADIPAKYAE  192 (328)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTSHHHHHHHHH----CC-----CSEEEEEECSHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHH----hC-----CCeEEEEeCCHHHHHHHH
Confidence            34445555555669999999999998766543    22     125889999999887643

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=94.83  E-value=0.02  Score=44.60  Aligned_cols=40  Identities=18%  Similarity=0.193  Sum_probs=28.6

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ..-+|+|+|||+|..+..+.+    ...      .+++-||+|+.+.+.-
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~----~~~------~~v~GiD~S~~~l~~A   63 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYER----AGI------GEYYGVDIAEVSINDA   63 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHH----HTC------SEEEEEESCHHHHHHH
T ss_pred             CcCEEEEecccCcHHHHHHHH----cCC------CeEEEecCCHHHHHHH
Confidence            345899999999976544332    222      2689999999987653

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=94.79  E-value=0.019  Score=45.52  Aligned_cols=45  Identities=20%  Similarity=0.300  Sum_probs=31.9

Q ss_pred             HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895          121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT  174 (186)
Q Consensus       121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L  174 (186)
                      +++.+..+..-+|+|||||+|.++..+++.    +|     .++.+++|++..+
T Consensus        73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~----~P-----~~~~~~~Dlp~~~  117 (256)
T d1qzza2          73 PADAYDWSAVRHVLDVGGGNGGMLAAIALR----AP-----HLRGTLVELAGPA  117 (256)
T ss_dssp             HHHTSCCTTCCEEEEETCTTSHHHHHHHHH----CT-----TCEEEEEECHHHH
T ss_pred             HHhcCCCccCCEEEEECCCCCHHHHHHHHh----hc-----CcEEEEecChHHH
Confidence            333343344458999999999999888764    46     3688999985443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.56  E-value=0.026  Score=43.86  Aligned_cols=42  Identities=21%  Similarity=0.332  Sum_probs=31.2

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      +.+. ..|+|||||+|..+..+..    ..| +    ..|+-||+|+.....
T Consensus        27 ~~~~-PlvLeIGcG~G~~~~~lA~----~~p-~----~~~iGiD~~~~~i~~   68 (204)
T d2fcaa1          27 GNDN-PIHIEVGTGKGQFISGMAK----QNP-D----INYIGIELFKSVIVT   68 (204)
T ss_dssp             TSCC-CEEEEECCTTSHHHHHHHH----HCT-T----SEEEEECSCHHHHHH
T ss_pred             CCCC-ceEEEEEecCcHHHHHHHH----hCC-C----CcEEEeecchHHHHH
Confidence            3444 3699999999998877533    456 3    479999999887654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.032  Score=44.10  Aligned_cols=51  Identities=8%  Similarity=0.158  Sum_probs=33.6

Q ss_pred             HHHHHHHh--CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          118 AEAIMRTA--NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       118 A~~i~~~~--~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .+.+.+..  +...+.+|+|+|||+|.+..  +..    .+ . .  -+++.+|+|+.+.+.-
T Consensus        41 ~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~--~~~----~~-~-~--~~v~~~D~S~~~i~~~   93 (263)
T d2g72a1          41 LRCLAQTFATGEVSGRTLIDIGSGPTVYQL--LSA----CS-H-F--EDITMTDFLEVNRQEL   93 (263)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGG--TTG----GG-G-C--SEEEEECSCHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCcEEEEeccCCCHHHH--HHh----cc-c-C--CeEEEEeCCHHHHHHH
Confidence            34444444  45567799999999996642  111    11 1 1  2699999999998864

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.045  Score=44.69  Aligned_cols=72  Identities=19%  Similarity=0.276  Sum_probs=53.9

Q ss_pred             ccccccccchH-HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          101 SWFTPVELFKP-WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       101 dF~Ts~eifsp-~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +|...+.+|-| ---|.|..+++... ...+.+|+|+|+|+|.++..+...    .|     +.+.+.||+|+.-.+.-+
T Consensus        80 ~~~v~~~VlIPRpeTE~lv~~~l~~~-~~~~~~vlDlGtGSG~I~i~la~~----~p-----~~~v~avDis~~Al~~A~  149 (274)
T d2b3ta1          80 PLFVSPATLIPRPDTECLVEQALARL-PEQPCRILDLGTGTGAIALALASE----RP-----DCEIIAVDRMPDAVSLAQ  149 (274)
T ss_dssp             EEECCTTSCCCCTTHHHHHHHHHHHS-CSSCCEEEEETCTTSHHHHHHHHH----CT-----TSEEEEECSSHHHHHHHH
T ss_pred             EEEEeccccccccchhhhhhhHhhhh-cccccceeeeehhhhHHHHHHHhh----CC-----cceeeeccchhHHHhHHH
Confidence            67777777777 55677777777665 345678999999999999887654    34     347999999998877755


Q ss_pred             Hhc
Q 029895          180 RNC  182 (186)
Q Consensus       180 ~~~  182 (186)
                      ++.
T Consensus       150 ~Na  152 (274)
T d2b3ta1         150 RNA  152 (274)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=94.50  E-value=0.011  Score=44.27  Aligned_cols=33  Identities=27%  Similarity=0.178  Sum_probs=25.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      -+|+|+|||+|.++..+       .  .      .+-||+||.+.+.-
T Consensus        38 ~~vLDiGcG~G~~~~~~-------~--~------~~giD~s~~~~~~a   70 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPL-------K--I------KIGVEPSERMAEIA   70 (208)
T ss_dssp             SCEEEETCTTSTTHHHH-------T--C------CEEEESCHHHHHHH
T ss_pred             CeEEEECCCCccccccc-------c--e------EEEEeCChhhcccc
Confidence            37999999999886543       1  1      25799999998863

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.11  E-value=0.039  Score=42.84  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=30.3

Q ss_pred             CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      +... ..|+|||||+|.++..+    .+..| +    ..++-||+|+.....
T Consensus        29 ~~~~-plvLdIGcG~G~~~~~l----A~~~p-~----~~~iGid~~~~~v~~   70 (204)
T d1yzha1          29 GNDN-PIHVEVGSGKGAFVSGM----AKQNP-D----INYIGIDIQKSVLSY   70 (204)
T ss_dssp             TSCC-CEEEEESCTTSHHHHHH----HHHCT-T----SEEEEEESCHHHHHH
T ss_pred             CCCC-CeEEEEeccCCHHHHHH----HHHCC-C----CceEEEeccHHHHHH
Confidence            4444 36899999999987665    34456 3    479999999875543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.053  Score=43.62  Aligned_cols=40  Identities=10%  Similarity=0.155  Sum_probs=28.7

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      ..-+|+|+|||+|.|+.-..+    ..+      -+.+.||.|+.+...+
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~----~Ga------~~V~aid~s~~~~~a~   74 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAK----AGA------KKVLGVDQSEILYQAM   74 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH----TTC------SEEEEEESSTHHHHHH
T ss_pred             CcCEEEEECCCCCHHHHHHHH----cCC------CEEEEEeCHHHHHHHH
Confidence            345899999999998764433    233      2578999999876544

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.072  Score=42.39  Aligned_cols=95  Identities=13%  Similarity=0.067  Sum_probs=60.5

Q ss_pred             cccccccChHHHHHHHHHHhhhcCCccccccccchHHH-HHHH-HHHHHHHh-----CCCCCceEEEecCCchhHHHHHH
Q 029895           76 IKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWY-AHGI-AEAIMRTA-----NLSVPLKIYEIGGGSGTCAKGVM  148 (186)
Q Consensus        76 ~Df~~l~~~~~y~~~~~~~y~~~~~dF~Ts~eifsp~F-g~~l-A~~i~~~~-----~~~~~l~IvEiGaG~GtLA~dIL  148 (186)
                      |||++=....++.+.+-+.+=..  +|.-++...-|=. .+.. -.|+...+     ......+|+|+|+|+|..+.-+.
T Consensus         3 idf~~~~a~~~l~~~ll~~f~gl--~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~   80 (250)
T d2h00a1           3 LNFKDPEAVRALTCTLLREDFGL--SIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLG   80 (250)
T ss_dssp             SCTTSHHHHHHHHHHHHHHHHCC--CCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHH
T ss_pred             eecCChHHHHHHHHHHHHHHcCc--eEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHH
Confidence            57777777777766444443334  3665555545532 1222 22333333     23456799999999999999887


Q ss_pred             HHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          149 DYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       149 ~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..+    |     +.+.+.+|+|+.--+.-+++
T Consensus        81 ~~~----~-----~~~~~~~Di~~~al~~A~~N  104 (250)
T d2h00a1          81 ATL----N-----GWYFLATEVDDMCFNYAKKN  104 (250)
T ss_dssp             HHH----H-----CCEEEEEESCHHHHHHHHHH
T ss_pred             HhC----C-----CccccceecCHHHHHHHHHH
Confidence            654    2     24789999999888875554

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.50  E-value=0.053  Score=39.59  Aligned_cols=43  Identities=16%  Similarity=0.077  Sum_probs=31.5

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...+|+|+|||+|.++...+   ....       -+.+.||+++...+.-+++
T Consensus        14 ~g~~vlDl~~GtG~~~iea~---~rga-------~~v~~ve~~~~a~~~~~~n   56 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAV---SRGM-------SAAVLVEKNRKAQAIIQDN   56 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHH---HTTC-------CEEEEECCCHHHHHHHHHH
T ss_pred             CCCeEEEcCCccCHHHHHHH---HhCc-------ceeeeehhchhhhhhhhhh
Confidence            45699999999999987443   2222       2689999999998865443

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.15  E-value=0.12  Score=42.12  Aligned_cols=50  Identities=14%  Similarity=0.225  Sum_probs=37.0

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      -+.+++..+....-+|+|||||.|.++.-+....    +      ++.+-|.+|+.-.+.
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~----g------~~v~git~s~~q~~~   99 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY----D------VNVIGLTLSENQYAH   99 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH----C------CEEEEEESCHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc----C------cceeeccchHHHHHH
Confidence            4455566666667799999999999987655432    2      468899999987665

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.043  Score=43.16  Aligned_cols=60  Identities=13%  Similarity=0.016  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      +|--|+.|+.-+ +..   ++-+|+|+|.|+|.=+.-+++.+.+        +.+.+.||++|...+..+++
T Consensus        44 ~~~~g~lL~~L~-~~~---~~k~vLEiGt~~GyStl~~a~al~~--------~g~i~tie~~~~~~~~A~~~  103 (219)
T d2avda1          44 TCEQAQLLANLA-RLI---QAKKALDLGTFTGYSALALALALPA--------DGRVVTCEVDAQPPELGRPL  103 (219)
T ss_dssp             CHHHHHHHHHHH-HHT---TCCEEEEECCTTSHHHHHHHTTSCT--------TCEEEEEESCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHH-Hcc---CCCeEEEEechhhHHHHHHHHhCCC--------CceEEEEeechhHHHHHHHH
Confidence            676677666433 333   3558999999999999988887632        34799999999998876554

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=92.28  E-value=0.18  Score=39.82  Aligned_cols=43  Identities=16%  Similarity=0.334  Sum_probs=30.6

Q ss_pred             HHHHHhC-CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecC
Q 029895          120 AIMRTAN-LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ  171 (186)
Q Consensus       120 ~i~~~~~-~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS  171 (186)
                      .+++.+. .+..-+|+|+|||+|+++..|++.    +| +    ++.++.|..
T Consensus        71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~----~P-~----l~~~v~Dlp  114 (244)
T d1fp1d2          71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISK----YP-L----IKGINFDLP  114 (244)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHH----CT-T----CEEEEEECH
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHH----CC-C----CeEEEecch
Confidence            3344443 355569999999999999998875    46 4    467777764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.15  E-value=0.14  Score=41.64  Aligned_cols=49  Identities=8%  Similarity=0.233  Sum_probs=36.6

Q ss_pred             HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895          119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD  177 (186)
Q Consensus       119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~  177 (186)
                      +.+++.++....-+|+|||||.|.+|.-+....    .      ++.+-|.+|+.-.+.
T Consensus        52 ~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~----g------~~v~git~s~~Q~~~  100 (285)
T d1kpga_          52 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY----D------VNVVGLTLSKNQANH  100 (285)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH----C------CEEEEEESCHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC----C------cceEEEeccHHHHHH
Confidence            444555555566799999999999998765541    2      579999999987775

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=91.72  E-value=0.14  Score=42.28  Aligned_cols=60  Identities=20%  Similarity=0.286  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      -.|-++++.-.+..  .+.+-+|+.||+|.|.+++.+|.+.    |     ..+.++||++|...+..++.
T Consensus        61 ~~Yhe~l~h~~l~~--~~~pk~VLiiG~G~G~~~~~ll~~~----~-----~~~v~~VEiD~~Vi~~a~~~  120 (312)
T d1uira_          61 YIYHETLVHPAMLT--HPEPKRVLIVGGGEGATLREVLKHP----T-----VEKAVMVDIDGELVEVAKRH  120 (312)
T ss_dssp             HHHHHHHHHHHHHH--SSCCCEEEEEECTTSHHHHHHTTST----T-----CCEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhh--CCCcceEEEeCCCchHHHHHHHhcC----C-----cceEEEecCCHHHHHHHHhc
Confidence            46778877643333  3556699999999999999887652    2     24789999999998876554

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=91.70  E-value=0.13  Score=41.77  Aligned_cols=72  Identities=17%  Similarity=0.229  Sum_probs=49.5

Q ss_pred             ccccccccchH-HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895          101 SWFTPVELFKP-WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE  179 (186)
Q Consensus       101 dF~Ts~eifsp-~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~  179 (186)
                      +|+..+.+|-| ---|.|..++...........|+|+|+|+|..+..+...     | +    .+++.+|+||.-.+.-+
T Consensus        81 ~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-----~-~----~~v~a~Dis~~Al~~A~  150 (271)
T d1nv8a_          81 SFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-----S-D----AIVFATDVSSKAVEIAR  150 (271)
T ss_dssp             EEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-----S-S----CEEEEEESCHHHHHHHH
T ss_pred             EEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-----c-c----ceeeechhhhhHHHHHH
Confidence            55555555544 234677777777664444568999999999988776432     3 2    36899999998888766


Q ss_pred             Hhc
Q 029895          180 RNC  182 (186)
Q Consensus       180 ~~~  182 (186)
                      +++
T Consensus       151 ~Na  153 (271)
T d1nv8a_         151 KNA  153 (271)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.44  E-value=0.29  Score=38.17  Aligned_cols=37  Identities=16%  Similarity=0.440  Sum_probs=29.4

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG  175 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~  175 (186)
                      .-+|+|+|||+|.++..|++.    +|     +++.+++|..+...
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~----~P-----~l~~~v~Dlp~vi~  118 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSK----YP-----TIKGINFDLPHVIE  118 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHH----CT-----TSEEEEEECTTTTT
T ss_pred             CcEEEEecCCCcHHHHHHHHH----CC-----CCeEEEcccHHhhh
Confidence            458999999999999999875    46     35788888876544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.35  E-value=0.14  Score=41.41  Aligned_cols=39  Identities=15%  Similarity=0.261  Sum_probs=26.5

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT  178 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q  178 (186)
                      .-+|+|+|||+|.|+.-...    ..+      -+.+.||.|+.....+
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~----~Ga------~~V~avd~s~~~~~a~   72 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAK----AGA------RKVIGIECSSISDYAV   72 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHH----TTC------SEEEEEECSTTHHHHH
T ss_pred             cCEEEEEecCCcHHHHHHHH----hCC------CEEEEEcCcHHHhhhh
Confidence            34799999999988743222    222      2467899999765443

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=90.88  E-value=0.27  Score=36.78  Aligned_cols=55  Identities=13%  Similarity=0.108  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ++|-+++....   ...+|+|++||+|.++...|.   .-..       +.+.||.|+...+.-++++
T Consensus        32 e~lfn~l~~~~---~~~~vLDlfaGsG~~gieals---rGa~-------~v~~VE~~~~a~~~~k~N~   86 (183)
T d2fpoa1          32 ETLFNWLAPVI---VDAQCLDCFAGSGALGLEALS---RYAA-------GATLIEMDRAVSQQLIKNL   86 (183)
T ss_dssp             HHHHHHHHHHH---TTCEEEETTCTTCHHHHHHHH---TTCS-------EEEEECSCHHHHHHHHHHH
T ss_pred             HHHHhhhhccc---chhhhhhhhccccceeeeEEe---cCcc-------eeEEEEEeechhhHHHHHH
Confidence            55555555444   345899999999999975443   2221       5789999999888655544

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=90.75  E-value=0.11  Score=41.12  Aligned_cols=61  Identities=10%  Similarity=-0.108  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      +|.=|+.|...+...    ++-+|+|+|.++|.=+.-+.+.+.+        +.+.+.||++|...+..+++.
T Consensus        44 ~~~~g~~L~~L~~~~----~~k~iLEiGT~~GyStl~la~al~~--------~g~v~tie~~~~~~~~A~~~~  104 (227)
T d1susa1          44 SADEGQFLSMLLKLI----NAKNTMEIGVYTGYSLLATALAIPE--------DGKILAMDINKENYELGLPVI  104 (227)
T ss_dssp             CHHHHHHHHHHHHHH----TCCEEEEECCGGGHHHHHHHHHSCT--------TCEEEEEESCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc----CCCcEEEecchhhhhHHHHHhhCCC--------CcEEEEEeccchhHHHHHHHH
Confidence            566666665544332    4569999999999999998888743        236899999999988766543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.35  E-value=0.19  Score=40.63  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=24.8

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT  174 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L  174 (186)
                      ..+|+|+|||+|.|+.-..    +...      -+.+.||.|+.+
T Consensus        39 ~~~VLDlGcGtG~ls~~aa----~~Ga------~~V~avd~s~~~   73 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAA----KHGA------KHVIGVDMSSII   73 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHH----HTCC------SEEEEEESSTHH
T ss_pred             cCEEEEeCCCCCHHHHHHH----HhCC------CEEEEEeCCHHH
Confidence            4589999999999875332    2222      257889999854

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.60  E-value=0.26  Score=40.46  Aligned_cols=61  Identities=23%  Similarity=0.255  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...|-|+++.--+...  +.+-+|+-||+|.|..++.+|.+.    |     ..+.++||++|...+..++.
T Consensus        72 e~~YhE~l~h~pl~~~--~~pk~VLiiGgG~G~~~r~~l~~~----~-----~~~i~~VEIDp~Vi~~a~~~  132 (295)
T d1inla_          72 EFMYHEMLAHVPMFLH--PNPKKVLIIGGGDGGTLREVLKHD----S-----VEKAILCEVDGLVIEAARKY  132 (295)
T ss_dssp             HHHHHHHHHHHHHHHS--SSCCEEEEEECTTCHHHHHHTTST----T-----CSEEEEEESCHHHHHHHHHH
T ss_pred             hhhhhhhhcchhHhhC--CCCceEEEecCCchHHHHHHHhcC----C-----CceEEEecCCHHHHHHHHHH
Confidence            3578888876655554  456699999999999988887652    2     23689999999999886653

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.33  E-value=0.3  Score=39.20  Aligned_cols=59  Identities=22%  Similarity=0.251  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..|-++++.-.+..  .+.+-+|+.+|+|.|..+..+|.+    .+      .+.++||++|...+.-++.
T Consensus        56 ~~Yhe~l~~~~l~~--~~~p~~vLiiG~G~G~~~~~~l~~----~~------~~v~~VEiD~~Vi~~a~~~  114 (276)
T d1mjfa_          56 RSYHEPLVHPAMLA--HPKPKRVLVIGGGDGGTVREVLQH----DV------DEVIMVEIDEDVIMVSKDL  114 (276)
T ss_dssp             HHHHHHHHHHHHHH--SSCCCEEEEEECTTSHHHHHHTTS----CC------SEEEEEESCHHHHHHHHHH
T ss_pred             hHHHHHhhcchhhc--CCCCceEEEecCCchHHHHHHHHh----CC------ceEEEecCCHHHHHHHHHh
Confidence            46777776543333  355669999999999999988753    22      2578999999999876654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=88.58  E-value=0.42  Score=38.43  Aligned_cols=62  Identities=16%  Similarity=0.190  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ...|-++++.-.+...  +.+-+|+-+|+|.|..++.+|.+.    +     ..+.++|||.|...+..++..
T Consensus        58 e~~Yhe~l~h~~l~~~--~~p~~vLiiGgG~G~~~~~~l~~~----~-----~~~i~~VEID~~Vi~~a~~~~  119 (274)
T d1iy9a_          58 EFVYHEMVAHVPLFTH--PNPEHVLVVGGGDGGVIREILKHP----S-----VKKATLVDIDGKVIEYSKKFL  119 (274)
T ss_dssp             HHHHHHHHHHHHHHHS--SSCCEEEEESCTTCHHHHHHTTCT----T-----CSEEEEEESCHHHHHHHHHHC
T ss_pred             hhhchhhhccchhhcc--CCcceEEecCCCCcHHHHHHHhcC----C-----cceEEEecCCHHHHHHHHHhC
Confidence            5678888877766555  445589999999999999988652    2     236899999999998866543

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.28  E-value=0.59  Score=35.61  Aligned_cols=54  Identities=15%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      .+.+++.+.+...-.++|+++|+|..+..||+.+    |     ..+.+.+|.+|...+.-++
T Consensus        12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~----~-----~~~vi~~D~d~~~l~~a~~   65 (192)
T d1m6ya2          12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHC----P-----GCRIIGIDVDSEVLRIAEE   65 (192)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHC----T-----TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcC----C-----CCeEEEeechHHHHHHHHH
Confidence            3445566666666799999999999999999864    3     2468999999998886444

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.78  E-value=0.3  Score=38.90  Aligned_cols=43  Identities=16%  Similarity=0.125  Sum_probs=32.1

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      .-+|+|+|||+|.++..++..   ..       .+.+.||+||.-.+.-++++
T Consensus       108 g~~VlD~~aG~G~~~l~~a~~---~~-------~~V~avd~n~~a~~~~~~N~  150 (260)
T d2frna1         108 DELVVDMFAGIGHLSLPIAVY---GK-------AKVIAIEKDPYTFKFLVENI  150 (260)
T ss_dssp             TCEEEETTCTTTTTHHHHHHH---TC-------CEEEEECCCHHHHHHHHHHH
T ss_pred             ccEEEECcceEcHHHHHHHHh---CC-------cEEEEecCCHHHHHHHHHHH
Confidence            348999999999999876542   11       36789999998777655543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.68  E-value=0.7  Score=34.64  Aligned_cols=53  Identities=4%  Similarity=-0.007  Sum_probs=37.2

Q ss_pred             CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895          127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER  180 (186)
Q Consensus       127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~  180 (186)
                      ...+++|.++|||+|.=+-.|.-.+.+... ....+++.+-.|+|+..-++-++
T Consensus        22 ~~~~lrIwsaGCstGeE~YSlA~~l~e~~~-~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          22 RHGEYRVWSAAASTGEEPYSIAITLADALG-MAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             SCSCEEEEESCCTTTHHHHHHHHHHHHHHC-SCTTSEEEEEEESCHHHHHHHHH
T ss_pred             cCCCeEEEEeCCCCchhHHHHHHHHHHhhh-hcCCceEEEeecCChHHhhHhhc
Confidence            356799999999999966666555554322 22245788888999987776544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.34  E-value=0.42  Score=38.77  Aligned_cols=61  Identities=21%  Similarity=0.230  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ...|-++++.-.+..  .+.+-+|+-+|+|.|..++.++.+.    +     ..+.++||+.|...+.-++.
T Consensus        61 e~~Yhe~l~h~~l~~--~~~pk~vLiiGgG~G~~~~~~l~~~----~-----~~~v~~vEiD~~Vv~~a~~~  121 (285)
T d2o07a1          61 EFSYQEMIANLPLCS--HPNPRKVLIIGGGDGGVLREVVKHP----S-----VESVVQCEIDEDVIQVSKKF  121 (285)
T ss_dssp             HHHHHHHHHHHHHTT--SSSCCEEEEEECTTSHHHHHHTTCT----T-----CCEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhccHhhhh--CcCcCeEEEeCCCchHHHHHHHHcC----C-----cceeeeccCCHHHHHHHHhh
Confidence            357778777655433  3456689999999999999887652    2     23789999999999886553

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.14  E-value=0.46  Score=38.59  Aligned_cols=60  Identities=20%  Similarity=0.191  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..|-++++.-.+...  +.+-+|+-+|+|.|..++.++.+.    |     -.+.++||++|...+.-++.
T Consensus        64 ~~Yhe~l~h~~~~~~--~~pk~VLiiGgG~G~~~r~~l~~~----~-----~~~i~~VEiD~~Vi~~~~~~  123 (290)
T d1xj5a_          64 CAYQEMITHLPLCSI--PNPKKVLVIGGGDGGVLREVARHA----S-----IEQIDMCEIDKMVVDVSKQF  123 (290)
T ss_dssp             HHHHHHHHHHHHTTS--SCCCEEEEETCSSSHHHHHHTTCT----T-----CCEEEEEESCHHHHHHHHHH
T ss_pred             hHHHHHHhhHHHhhC--CCCcceEEecCCchHHHHHHHhcc----c-----ceeeEEecCCHHHHHHHHHh
Confidence            456677766554433  556699999999999999887652    2     12689999999998876553

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.54  E-value=0.74  Score=38.00  Aligned_cols=60  Identities=20%  Similarity=0.216  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895          111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN  181 (186)
Q Consensus       111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~  181 (186)
                      ..|-++++.--+...  +.+-+|+-+|+|.|..++.+|.+    .|     -.+.++||+.|...+..++.
T Consensus        90 ~~YhE~l~h~pl~~~--~~pk~VLIiGgG~G~~~rellk~----~~-----v~~v~~VEID~~Vv~~a~~~  149 (312)
T d2b2ca1          90 FSYQEMLAHLPMFAH--PDPKRVLIIGGGDGGILREVLKH----ES-----VEKVTMCEIDEMVIDVAKKF  149 (312)
T ss_dssp             SHHHHHHHHHHHHHS--SSCCEEEEESCTTSHHHHHHTTC----TT-----CCEEEEECSCHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHhcC--CCCCeEEEeCCCchHHHHHHHHc----CC-----cceEEEEcccHHHHHHHHhh
Confidence            578888887665444  45568999999999999988765    22     13689999999998876654

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=84.52  E-value=0.48  Score=37.18  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=26.0

Q ss_pred             CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895          130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS  172 (186)
Q Consensus       130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp  172 (186)
                      .-+|+|+|||+|.++..+++.    +| +    ++.++.|..+
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~----~P-~----l~~~v~Dlp~  114 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICET----FP-K----LKCIVFDRPQ  114 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHH----CT-T----CEEEEEECHH
T ss_pred             ceEEEEecCCccHHHHHHHHh----CC-C----CeEEEecCHH
Confidence            347999999999999987765    46 3    4778887643

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.03  E-value=0.56  Score=35.11  Aligned_cols=44  Identities=16%  Similarity=0.029  Sum_probs=33.6

Q ss_pred             CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895          129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC  182 (186)
Q Consensus       129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~  182 (186)
                      ...+|+|+.||+|.++...|..   -+       -+.+.||.|+...+..++++
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~sr---Ga-------~~v~~ve~~~~a~~~~~~N~   84 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSR---GM-------DKSICIEKNFAALKVIKENI   84 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHT---TC-------SEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEcccccccccceeeec---ch-------hHHHHHHHHHHHHHHHHHHh
Confidence            4569999999999999865542   12       25789999999888766554