Citrus Sinensis ID: 029913

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFHGILCIPESPS
cccccccccEEEEEEcccEEEEEEEcccccccEEEEcccccEEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccEEEEEEEEEccccccEEEEEccccccEEcccEEEEcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccc
cccHHccccEEEEEEEccEEEEEEEccEEEccEEEEcccccEEEEEccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEcccccEEccccEEEEEccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccc
MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIglsglatdsqTLYQRLVFRHKLYQlreerdmkpETFASLVSALLYEkrfgpyfcqpviaglsdedkpfictmdsIGAKELAKDFVVAgtageslygaceamfkpdmvcNIRFFSLLLDIRMLFHGilcipesps
MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQlreerdmkpETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFHGILCIPESPS
MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFHGILCIPESPS
*****YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFHGILCI*****
MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLF****C******
MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFHGILCIPESPS
*SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFHGILCIPE***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFHGILCIPESPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query185 2.2.26 [Sep-21-2011]
Q9XI05204 Proteasome subunit beta t yes no 0.848 0.769 0.929 4e-83
O81153204 Proteasome subunit beta t yes no 0.848 0.769 0.923 3e-82
O65084204 Proteasome subunit beta t N/A no 0.848 0.769 0.898 1e-80
Q9LST7204 Proteasome subunit beta t yes no 0.848 0.769 0.872 2e-79
Q55D66205 Proteasome subunit beta t yes no 0.848 0.765 0.575 4e-51
O73817205 Proteasome subunit beta t N/A no 0.848 0.765 0.588 5e-51
P49720205 Proteasome subunit beta t yes no 0.848 0.765 0.582 2e-50
Q9R1P1205 Proteasome subunit beta t yes no 0.848 0.765 0.582 2e-50
P33672205 Proteasome subunit beta t yes no 0.848 0.765 0.582 3e-50
P40112205 Proteasome subunit beta t yes no 0.848 0.765 0.575 3e-50
>sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2 Back     alignment and function desciption
 Score =  306 bits (785), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 146/157 (92%), Positives = 152/157 (96%)

Query: 1   MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
           MSI EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDR+FIGLSGLATD 
Sbjct: 1   MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDV 60

Query: 61  QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
           QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGPY CQPVIAGL D+DKPFI
Sbjct: 61  QTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFI 120

Query: 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDM 157
           CTMDSIGAKELAKDFVV+GTA ESLYGACEAM+KPDM
Sbjct: 121 CTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDM 157
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1
>sp|O81153|PSB3B_ARATH Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1 Back     alignment and function description
>sp|O65084|PSB3_PICMA Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LST7|PSB3_ORYSJ Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1 Back     alignment and function description
>sp|Q55D66|PSB3_DICDI Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1 Back     alignment and function description
>sp|O73817|PSB3_ONCMY Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1 Back     alignment and function description
>sp|P49720|PSB3_HUMAN Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2 Back     alignment and function description
>sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1 Back     alignment and function description
>sp|P33672|PSB3_BOVIN Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3 Back     alignment and function description
>sp|P40112|PSB3_RAT Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
357509159204 Proteasome subunit beta type [Medicago t 0.848 0.769 0.936 4e-82
388491594206 unknown [Medicago truncatula] 0.848 0.762 0.936 5e-82
388521659204 unknown [Lotus japonicus] 0.848 0.769 0.936 5e-82
255558626204 proteasome subunit beta type, putative [ 0.848 0.769 0.929 7e-82
351723417204 uncharacterized protein LOC100306084 [Gl 0.848 0.769 0.929 8e-82
388513745204 unknown [Medicago truncatula] 0.848 0.769 0.929 9e-82
351721818204 uncharacterized protein LOC100499664 [Gl 0.848 0.769 0.936 1e-81
18395025204 proteasome subunit beta type-3-A [Arabid 0.848 0.769 0.929 2e-81
225459609204 PREDICTED: proteasome subunit beta type- 0.848 0.769 0.923 2e-81
449464176204 PREDICTED: proteasome subunit beta type- 0.848 0.769 0.923 2e-81
>gi|357509159|ref|XP_003624868.1| Proteasome subunit beta type [Medicago truncatula] gi|355499883|gb|AES81086.1| Proteasome subunit beta type [Medicago truncatula] Back     alignment and taxonomy information
 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 147/157 (93%), Positives = 153/157 (97%)

Query: 1   MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
           MSI EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD+LFIGLSGLATDS
Sbjct: 1   MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDS 60

Query: 61  QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
           QTLYQRLVFRHKLYQLREERDMKPETFASLVS++ YEKRFGPYFCQPVIAGL D+DKPFI
Sbjct: 61  QTLYQRLVFRHKLYQLREERDMKPETFASLVSSMQYEKRFGPYFCQPVIAGLGDDDKPFI 120

Query: 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDM 157
           CTMD+IGAKELAKDFVVAGTA ESLYGACE+MFKPDM
Sbjct: 121 CTMDAIGAKELAKDFVVAGTASESLYGACESMFKPDM 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388491594|gb|AFK33863.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388521659|gb|AFK48891.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255558626|ref|XP_002520338.1| proteasome subunit beta type, putative [Ricinus communis] gi|223540557|gb|EEF42124.1| proteasome subunit beta type, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351723417|ref|NP_001237278.1| uncharacterized protein LOC100306084 [Glycine max] gi|255627485|gb|ACU14087.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388513745|gb|AFK44934.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|351721818|ref|NP_001237990.1| uncharacterized protein LOC100499664 [Glycine max] gi|255625639|gb|ACU13164.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18395025|ref|NP_564149.1| proteasome subunit beta type-3-A [Arabidopsis thaliana] gi|288558823|sp|Q9XI05.2|PSB3A_ARATH RecName: Full=Proteasome subunit beta type-3-A; AltName: Full=20S proteasome beta subunit C-1; AltName: Full=Proteasome component T gi|17473525|gb|AAL38246.1| proteasome subunit [Arabidopsis thaliana] gi|21387087|gb|AAM47947.1| proteasome subunit [Arabidopsis thaliana] gi|110740894|dbj|BAE98543.1| 20S proteasome beta subunit PBC2 like protein [Arabidopsis thaliana] gi|332192025|gb|AEE30146.1| proteasome subunit beta type-3-A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225459609|ref|XP_002285871.1| PREDICTED: proteasome subunit beta type-3-A isoform 1 [Vitis vinifera] gi|302141789|emb|CBI18992.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449464176|ref|XP_004149805.1| PREDICTED: proteasome subunit beta type-3-A-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
TAIR|locus:2036972204 PBC1 "proteasome beta subunit 0.848 0.769 0.929 4.5e-75
TAIR|locus:2204675204 PBC2 "20S proteasome beta subu 0.848 0.769 0.923 3.1e-74
UNIPROTKB|E1BYW9205 PSMB3 "Proteasome subunit beta 0.848 0.765 0.588 2.6e-47
DICTYBASE|DDB_G0269772205 psmB3 "proteasome subunit beta 0.848 0.765 0.575 5.4e-47
UNIPROTKB|O73817205 psmb3 "Proteasome subunit beta 0.848 0.765 0.588 5.4e-47
ZFIN|ZDB-GENE-040426-2682205 psmb3 "proteasome (prosome, ma 0.848 0.765 0.582 1.4e-46
UNIPROTKB|E2QX17205 PSMB3 "Proteasome subunit beta 0.848 0.765 0.582 3e-46
UNIPROTKB|P49720205 PSMB3 "Proteasome subunit beta 0.848 0.765 0.582 3e-46
MGI|MGI:1347014205 Psmb3 "proteasome (prosome, ma 0.848 0.765 0.582 3e-46
RGD|61875205 Psmb3 "proteasome (prosome, ma 0.848 0.765 0.575 3.8e-46
TAIR|locus:2036972 PBC1 "proteasome beta subunit C1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 146/157 (92%), Positives = 152/157 (96%)

Query:     1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
             MSI EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDR+FIGLSGLATD 
Sbjct:     1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDV 60

Query:    61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
             QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGPY CQPVIAGL D+DKPFI
Sbjct:    61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFI 120

Query:   121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDM 157
             CTMDSIGAKELAKDFVV+GTA ESLYGACEAM+KPDM
Sbjct:   121 CTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDM 157
GO:0004175 "endopeptidase activity" evidence=IEA
GO:0004298 "threonine-type endopeptidase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005839 "proteasome core complex" evidence=IEA;TAS
GO:0008233 "peptidase activity" evidence=ISS
GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0000502 "proteasome complex" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
TAIR|locus:2204675 PBC2 "20S proteasome beta subunit C2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYW9 PSMB3 "Proteasome subunit beta type" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269772 psmB3 "proteasome subunit beta type 3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|O73817 psmb3 "Proteasome subunit beta type-3" [Oncorhynchus mykiss (taxid:8022)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2682 psmb3 "proteasome (prosome, macropain) subunit, beta type, 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2QX17 PSMB3 "Proteasome subunit beta type" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P49720 PSMB3 "Proteasome subunit beta type-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1347014 Psmb3 "proteasome (prosome, macropain) subunit, beta type 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|61875 Psmb3 "proteasome (prosome, macropain) subunit, beta type 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LST7PSB3_ORYSJ3, ., 4, ., 2, 5, ., 10.87260.84860.7696yesno
P33672PSB3_BOVIN3, ., 4, ., 2, 5, ., 10.58220.84860.7658yesno
P40112PSB3_RAT3, ., 4, ., 2, 5, ., 10.57590.84860.7658yesno
Q9XI05PSB3A_ARATH3, ., 4, ., 2, 5, ., 10.92990.84860.7696yesno
O81153PSB3B_ARATH3, ., 4, ., 2, 5, ., 10.92350.84860.7696yesno
Q55D66PSB3_DICDI3, ., 4, ., 2, 5, ., 10.57590.84860.7658yesno
Q9Y7T8PSB3_SCHPO3, ., 4, ., 2, 5, ., 10.55410.84860.7696yesno
O65084PSB3_PICMA3, ., 4, ., 2, 5, ., 10.89800.84860.7696N/Ano
Q9R1P1PSB3_MOUSE3, ., 4, ., 2, 5, ., 10.58220.84860.7658yesno
P49720PSB3_HUMAN3, ., 4, ., 2, 5, ., 10.58220.84860.7658yesno
Q9XYN7PSB3_DROME3, ., 4, ., 2, 5, ., 10.54430.84860.7658yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.25.10.979
3rd Layer3.4.250.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
cd03759195 cd03759, proteasome_beta_type_3, proteasome beta t 1e-97
cd01912189 cd01912, proteasome_beta, proteasome beta subunit 8e-50
cd01906182 cd01906, proteasome_protease_HslV, proteasome_prot 1e-38
pfam00227188 pfam00227, Proteasome, Proteasome subunit 7e-37
cd01901164 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term 3e-29
COG0638236 COG0638, PRE1, 20S proteasome, alpha and beta subu 8e-29
cd03757212 cd03757, proteasome_beta_type_1, proteasome beta t 1e-24
TIGR03634185 TIGR03634, arc_protsome_B, proteasome endopeptidas 3e-21
cd03764188 cd03764, proteasome_beta_archeal, Archeal proteaso 1e-20
cd03760197 cd03760, proteasome_beta_type_4, proteasome beta t 2e-08
cd03758193 cd03758, proteasome_beta_type_2, proteasome beta t 6e-07
cd03762188 cd03762, proteasome_beta_type_6, proteasome beta t 3e-06
cd01911209 cd01911, proteasome_alpha, proteasome alpha subuni 0.003
>gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit Back     alignment and domain information 
 Score =  280 bits (718), Expect = 1e-97
 Identities = 101/152 (66%), Positives = 127/152 (83%)

Query: 6   YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
           YNG A+VAM GK+C AIASD RLGVQ QT++TDFQ++ +I DRL+IGL+GLATD QTL Q
Sbjct: 1   YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQ 60

Query: 66  RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
           +L FR  LY+LREER++KP+TF+SL+S+LLYEKRFGPYF +PV+AGL  + KPFICTMD 
Sbjct: 61  KLRFRVNLYRLREEREIKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDL 120

Query: 126 IGAKELAKDFVVAGTAGESLYGACEAMFKPDM 157
           IG   +  DFVV+GTA E LYG CE++++PDM
Sbjct: 121 IGCPSIPSDFVVSGTASEQLYGMCESLWRPDM 152

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 195
>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit Back     alignment and domain information
>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV Back     alignment and domain information
>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit Back     alignment and domain information
>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid Back     alignment and domain information
>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit Back     alignment and domain information
>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit Back     alignment and domain information
>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit Back     alignment and domain information
>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit Back     alignment and domain information
>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit Back     alignment and domain information
>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit Back     alignment and domain information
>gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 185
cd03757212 proteasome_beta_type_1 proteasome beta type-1 subu 100.0
cd03759195 proteasome_beta_type_3 proteasome beta type-3 subu 100.0
COG0638236 PRE1 20S proteasome, alpha and beta subunits [Post 100.0
cd03760197 proteasome_beta_type_4 proteasome beta type-4 subu 100.0
cd03761188 proteasome_beta_type_5 proteasome beta type-5 subu 100.0
TIGR03634185 arc_protsome_B proteasome endopeptidase complex, a 100.0
cd03758193 proteasome_beta_type_2 proteasome beta type-2 subu 100.0
cd03764188 proteasome_beta_archeal Archeal proteasome, beta s 100.0
cd03762188 proteasome_beta_type_6 proteasome beta type-6 subu 100.0
cd03755207 proteasome_alpha_type_7 proteasome_alpha_type_7. T 100.0
cd03752213 proteasome_alpha_type_4 proteasome_alpha_type_4. T 100.0
PTZ00488247 Proteasome subunit beta type-5; Provisional 100.0
cd01912189 proteasome_beta proteasome beta subunit. The 20S p 100.0
TIGR03690219 20S_bact_beta proteasome, beta subunit, bacterial 100.0
cd03750227 proteasome_alpha_type_2 proteasome_alpha_type_2. T 100.0
cd03763189 proteasome_beta_type_7 proteasome beta type-7 subu 100.0
cd03751212 proteasome_alpha_type_3 proteasome_alpha_type_3. T 100.0
cd03754215 proteasome_alpha_type_6 proteasome_alpha_type_6. T 100.0
cd01911209 proteasome_alpha proteasome alpha subunit. The 20S 100.0
cd01906182 proteasome_protease_HslV proteasome_protease_HslV. 100.0
cd03749211 proteasome_alpha_type_1 proteasome_alpha_type_1. T 100.0
PTZ00246253 proteasome subunit alpha; Provisional 100.0
cd03756211 proteasome_alpha_archeal proteasome_alpha_archeal. 100.0
PF00227190 Proteasome: Proteasome subunit; InterPro: IPR00135 100.0
cd03753213 proteasome_alpha_type_5 proteasome_alpha_type_5. T 100.0
TIGR03633224 arc_protsome_A proteasome endopeptidase complex, a 100.0
PRK03996241 proteasome subunit alpha; Provisional 100.0
cd03765236 proteasome_beta_bacterial Bacterial proteasome, be 100.0
KOG0176241 consensus 20S proteasome, regulatory subunit alpha 100.0
KOG0179235 consensus 20S proteasome, regulatory subunit beta 100.0
TIGR03691228 20S_bact_alpha proteasome, alpha subunit, bacteria 100.0
KOG0178249 consensus 20S proteasome, regulatory subunit alpha 100.0
KOG0177200 consensus 20S proteasome, regulatory subunit beta 100.0
KOG0184254 consensus 20S proteasome, regulatory subunit alpha 100.0
KOG0183249 consensus 20S proteasome, regulatory subunit alpha 100.0
KOG0181233 consensus 20S proteasome, regulatory subunit alpha 100.0
KOG0180204 consensus 20S proteasome, regulatory subunit beta 100.0
KOG0173271 consensus 20S proteasome, regulatory subunit beta 100.0
KOG0175285 consensus 20S proteasome, regulatory subunit beta 100.0
KOG0174224 consensus 20S proteasome, regulatory subunit beta 100.0
PRK05456172 ATP-dependent protease subunit HslV; Provisional 100.0
cd01901164 Ntn_hydrolase The Ntn hydrolases (N-terminal nucle 100.0
cd01913171 protease_HslV Protease HslV and the ATPase/chapero 100.0
KOG0185256 consensus 20S proteasome, regulatory subunit beta 99.98
TIGR03692171 ATP_dep_HslV ATP-dependent protease HslVU, peptida 99.97
KOG0863264 consensus 20S proteasome, regulatory subunit alpha 99.97
KOG0182246 consensus 20S proteasome, regulatory subunit alpha 99.97
COG5405178 HslV ATP-dependent protease HslVU (ClpYQ), peptida 99.82
COG3484255 Predicted proteasome-type protease [Posttranslatio 99.38
PF09894194 DUF2121: Uncharacterized protein conserved in arch 95.59
KOG3361157 consensus Iron binding protein involved in Fe-S cl 91.98
COG4079 293 Uncharacterized protein conserved in archaea [Func 85.53
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit Back     alignment and domain information 
Probab=100.00  E-value=1.8e-46  Score=297.03  Aligned_cols=178  Identities=25%  Similarity=0.402  Sum_probs=169.4

Q ss_pred             CCcccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCC
Q 029913            1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER   80 (185)
Q Consensus         1 ~~~~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (185)
                      .|||.++|+|+|||+++||||||+|++.+.+.++..++.+||++|+++++++++|..+|++.+.+.++.+++.|++.+++
T Consensus         1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~   80 (212)
T cd03757           1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNK   80 (212)
T ss_pred             CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCC
Confidence            48999999999999999999999999999998888888999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCC------
Q 029913           81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK------  154 (185)
Q Consensus        81 ~~~~~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~------  154 (185)
                      +++++.+++++++++|++|.+||++++|+||||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+      
T Consensus        81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~  159 (212)
T cd03757          81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERET-YSAGGSASSLIQPLLDNQVGRKNQNN  159 (212)
T ss_pred             CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecC-EEEEeecHHHHHHHHHHHHHhhccCc
Confidence            99999999999999999888899999999999976789999999999999997 99999999999999999975      


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHhhcccc
Q 029913          155 ---PDMVCNIRFFSLLLDIRMLFHGILC  179 (185)
Q Consensus       155 ---~~~s~eea~~l~~~al~~~~~~~~~  179 (185)
                         ++||+|||++++.+||+.+.++-..
T Consensus       160 ~~~~~ms~eea~~l~~~~l~~~~~rd~~  187 (212)
T cd03757         160 VERTPLSLEEAVSLVKDAFTSAAERDIY  187 (212)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence               8999999999999999998885543

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit Back     alignment and domain information
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit Back     alignment and domain information
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit Back     alignment and domain information
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit Back     alignment and domain information
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit Back     alignment and domain information
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit Back     alignment and domain information
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit Back     alignment and domain information
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7 Back     alignment and domain information
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4 Back     alignment and domain information
>PTZ00488 Proteasome subunit beta type-5; Provisional Back     alignment and domain information
>cd01912 proteasome_beta proteasome beta subunit Back     alignment and domain information
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type Back     alignment and domain information
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2 Back     alignment and domain information
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit Back     alignment and domain information
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3 Back     alignment and domain information
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6 Back     alignment and domain information
>cd01911 proteasome_alpha proteasome alpha subunit Back     alignment and domain information
>cd01906 proteasome_protease_HslV proteasome_protease_HslV Back     alignment and domain information
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1 Back     alignment and domain information
>PTZ00246 proteasome subunit alpha; Provisional Back     alignment and domain information
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal Back     alignment and domain information
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins Back     alignment and domain information
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5 Back     alignment and domain information
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit Back     alignment and domain information
>PRK03996 proteasome subunit alpha; Provisional Back     alignment and domain information
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit Back     alignment and domain information
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type Back     alignment and domain information
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05456 ATP-dependent protease subunit HslV; Provisional Back     alignment and domain information
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid Back     alignment and domain information
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome Back     alignment and domain information
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit Back     alignment and domain information
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion] Back     alignment and domain information
>COG4079 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
3unb_I205 Mouse Constitutive 20s Proteasome In Complex With P 2e-51
1iru_J205 Crystal Structure Of The Mammalian 20s Proteasome A 2e-51
1g0u_I205 A Gated Channel Into The Proteasome Core Particle L 2e-38
1ryp_J204 Crystal Structure Of The 20s Proteasome From Yeast 2e-38
1iru_M213 Crystal Structure Of The Mammalian 20s Proteasome A 6e-15
3unb_L213 Mouse Constitutive 20s Proteasome In Complex With P 8e-15
1j2q_H202 20s Proteasome In Complex With Calpain-inhibitor I 4e-13
3h4p_a219 Proteasome 20s Core Particle From Methanocaldococcu 3e-12
1ya7_H217 Implications For Interactions Of Proteasome With Pa 2e-09
1pma_B211 Proteasome From Thermoplasma Acidophilum Length = 2 2e-09
1ryp_M222 Crystal Structure Of The 20s Proteasome From Yeast 9e-09
1g0u_L241 A Gated Channel Into The Proteasome Core Particle L 9e-09
3c91_H203 Thermoplasma Acidophilum 20s Proteasome With An Ope 2e-08
3nzj_N215 Crystal Structure Of Yeast 20s Proteasome In Comple 3e-07
1ryp_H205 Crystal Structure Of The 20s Proteasome From Yeast 4e-07
1g65_N196 Crystal Structure Of Epoxomicin:20s Proteasome Reve 2e-06
1vsy_H196 Proteasome Activator Complex Length = 196 2e-06
3unf_N199 Mouse 20s Immunoproteasome In Complex With Pr-957 L 4e-05
4b4t_5287 Near-Atomic Resolution Structural Model Of The Yeas 5e-05
1fnt_D254 Crystal Structure Of The 20s Proteasome From Yeast 5e-05
1ryp_L212 Crystal Structure Of The 20s Proteasome From Yeast 7e-05
1g0u_C243 A Gated Channel Into The Proteasome Core Particle L 7e-05
1ryp_D241 Crystal Structure Of The 20s Proteasome From Yeast 8e-05
1vsy_D227 Proteasome Activator Complex Length = 227 9e-05
3nzj_K287 Crystal Structure Of Yeast 20s Proteasome In Comple 1e-04
1g0u_K212 A Gated Channel Into The Proteasome Core Particle L 2e-04
>pdb|3UNB|I Chain I, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205 Back     alignment and structure 
Iteration: 1

 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 92/158 (58%), Positives = 120/158 (75%), Gaps = 1/158 (0%)
Query: 1   MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
           MSI  YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD 
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61  QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
           QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPF
Sbjct: 61  QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 120 ICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDM 157
           IC++D IG   +  DFVV+GT  E +YG CE++++P+M
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNM 158
>pdb|1IRU|J Chain J, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205 Back     alignment and structure
>pdb|1G0U|I Chain I, A Gated Channel Into The Proteasome Core Particle Length = 205 Back     alignment and structure
>pdb|1RYP|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 204 Back     alignment and structure
>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 213 Back     alignment and structure
>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 213 Back     alignment and structure
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 202 Back     alignment and structure
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 219 Back     alignment and structure
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And Pa700 From The 1.9 A Structure Of A Proteasome-11s Activator Complex Length = 217 Back     alignment and structure
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum Length = 211 Back     alignment and structure
>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 222 Back     alignment and structure
>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle Length = 241 Back     alignment and structure
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate Length = 203 Back     alignment and structure
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 215 Back     alignment and structure
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 205 Back     alignment and structure
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A Molecular Basis For Selectivity Of Alpha,Beta-Epoxyketone Proteasome Inhibitors Length = 196 Back     alignment and structure
>pdb|1VSY|H Chain H, Proteasome Activator Complex Length = 196 Back     alignment and structure
>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 199 Back     alignment and structure
>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 287 Back     alignment and structure
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 254 Back     alignment and structure
>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 212 Back     alignment and structure
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle Length = 243 Back     alignment and structure
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 241 Back     alignment and structure
>pdb|1VSY|D Chain D, Proteasome Activator Complex Length = 227 Back     alignment and structure
>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 287 Back     alignment and structure
>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle Length = 212 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
1iru_J205 20S proteasome; cell cycle, immune response, prote 6e-64
1ryp_J204 20S proteasome; multicatalytic proteinase, protein 5e-58
1iru_M213 20S proteasome; cell cycle, immune response, prote 3e-55
1ryp_M222 20S proteasome; multicatalytic proteinase, protein 1e-50
1j2q_H202 Proteasome beta subunit; ubiquitin, CP, hydrolase; 3e-50
3h4p_A264 Proteasome subunit alpha; core particle, cytoplasm 9e-50
3unf_N199 Proteasome subunit beta type-9; antigen presentati 4e-48
1g0u_M266 Proteasome component PRE4; ubiquitin, degradation, 2e-44
1ryp_N233 20S proteasome; multicatalytic proteinase, protein 2e-41
1iru_K201 20S proteasome; cell cycle, immune response, prote 6e-41
1ryp_K198 20S proteasome; multicatalytic proteinase, protein 1e-40
1ryp_L212 20S proteasome; multicatalytic proteinase, protein 7e-40
3nzj_K287 Proteasome component PRE2; ubiquitin, protein degr 7e-39
1iru_H205 20S proteasome; cell cycle, immune response, prote 2e-34
1ryp_H205 20S proteasome; multicatalytic proteinase, protein 1e-32
1iru_L204 20S proteasome; cell cycle, immune response, prote 3e-27
1yar_H217 Proteasome beta subunit; proteasome 20S, PA26 prot 2e-21
1iru_N219 20S proteasome; cell cycle, immune response, prote 8e-21
1iru_I234 20S proteasome; cell cycle, immune response, prote 2e-20
3nzj_H261 Proteasome component PUP1; ubiquitin, protein degr 1e-19
1ryp_I222 20S proteasome; multicatalytic proteinase, protein 1e-19
2jay_A291 Proteasome; hydrolase; 1.99A {Mycobacterium tuberc 2e-19
1q5q_A259 Proteasome alpha-type subunit 1; proteasome assemb 5e-19
1q5r_H294 Proteasome beta-type subunit 1; proteasome assembl 4e-16
1q5q_H235 Proteasome beta-type subunit 1; proteasome assembl 1e-15
3unf_H234 Proteasome subunit beta type-10; antigen presentat 6e-15
3mi0_A248 Proteasome subunit alpha; enzyme inhibitors, lacto 6e-14
1ryp_C244 20S proteasome; multicatalytic proteinase, protein 9e-06
1iru_C261 20S proteasome; cell cycle, immune response, prote 9e-06
2z3b_A180 ATP-dependent protease HSLV; N-terminal nucleophIl 8e-05
1iru_D248 20S proteasome; cell cycle, immune response, prote 9e-05
1ryp_B250 20S proteasome; multicatalytic proteinase, protein 2e-04
1iru_B233 20S proteasome; cell cycle, immune response, prote 2e-04
1iru_F263 20S proteasome; cell cycle, immune response, prote 2e-04
1ryp_G244 20S proteasome; multicatalytic proteinase, protein 3e-04
1iru_G254 20S proteasome; cell cycle, immune response, prote 3e-04
1ryp_E242 20S proteasome; multicatalytic proteinase, protein 3e-04
3nzj_F288 Proteasome component C1; ubiquitin, protein degrad 4e-04
1yar_A233 Proteasome alpha subunit; proteasome 20S, PA26 pro 6e-04
1ryp_A243 20S proteasome; multicatalytic proteinase, protein 9e-04
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205 Back     alignment and structure
 Score =  195 bits (497), Expect = 6e-64
 Identities = 92/158 (58%), Positives = 119/158 (75%), Gaps = 1/158 (0%)

Query: 1   MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
           MSI  YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD 
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query: 61  QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGL-SDEDKPF 119
           QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL     KPF
Sbjct: 61  QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query: 120 ICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDM 157
           IC++D IG   +  DFVV+GT  E +YG CE++++P+M
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNM 158
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204 Back     alignment and structure
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213 Back     alignment and structure
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222 Back     alignment and structure
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202 Back     alignment and structure
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264 Back     alignment and structure
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199 Back     alignment and structure
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266 Back     alignment and structure
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233 Back     alignment and structure
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201 Back     alignment and structure
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198 Back     alignment and structure
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212 Back     alignment and structure
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287 Back     alignment and structure
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205 Back     alignment and structure
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205 Back     alignment and structure
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204 Back     alignment and structure
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217 Back     alignment and structure
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219 Back     alignment and structure
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234 Back     alignment and structure
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261 Back     alignment and structure
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222 Back     alignment and structure
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291 Back     alignment and structure
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259 Back     alignment and structure
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294 Back     alignment and structure
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235 Back     alignment and structure
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234 Back     alignment and structure
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248 Back     alignment and structure
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Length = 244 Back     alignment and structure
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Length = 261 Back     alignment and structure
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Length = 180 Back     alignment and structure
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Length = 248 Back     alignment and structure
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Length = 250 Back     alignment and structure
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Length = 233 Back     alignment and structure
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Length = 263 Back     alignment and structure
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Length = 244 Back     alignment and structure
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Length = 254 Back     alignment and structure
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Length = 242 Back     alignment and structure
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F* Length = 288 Back     alignment and structure
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Length = 233 Back     alignment and structure
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
1iru_J205 20S proteasome; cell cycle, immune response, prote 100.0
1iru_M213 20S proteasome; cell cycle, immune response, prote 100.0
1yar_H217 Proteasome beta subunit; proteasome 20S, PA26 prot 100.0
1ryp_M222 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_J204 20S proteasome; multicatalytic proteinase, protein 100.0
3h4p_a219 Proteasome subunit beta; core particle, cytoplasm, 100.0
1j2q_H202 Proteasome beta subunit; ubiquitin, CP, hydrolase; 100.0
1ryp_N233 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_A243 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_K198 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_L204 20S proteasome; cell cycle, immune response, prote 100.0
1iru_N219 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_L212 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_H205 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_H205 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_C244 20S proteasome; multicatalytic proteinase, protein 100.0
3nzj_K287 Proteasome component PRE2; ubiquitin, protein degr 100.0
1iru_K201 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_D241 20S proteasome; multicatalytic proteinase, protein 100.0
1g0u_M266 Proteasome component PRE4; ubiquitin, degradation, 100.0
1yar_A233 Proteasome alpha subunit; proteasome 20S, PA26 pro 100.0
1iru_A246 20S proteasome; cell cycle, immune response, prote 100.0
3unf_H234 Proteasome subunit beta type-10; antigen presentat 100.0
3nzj_H261 Proteasome component PUP1; ubiquitin, protein degr 100.0
1ryp_E242 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_C261 20S proteasome; cell cycle, immune response, prote 100.0
1iru_B233 20S proteasome; cell cycle, immune response, prote 100.0
1q5q_H235 Proteasome beta-type subunit 1; proteasome assembl 100.0
1ryp_I222 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_D248 20S proteasome; cell cycle, immune response, prote 100.0
1iru_E241 20S proteasome; cell cycle, immune response, prote 100.0
1iru_G254 20S proteasome; cell cycle, immune response, prote 100.0
3unf_N199 Proteasome subunit beta type-9; antigen presentati 100.0
1q5r_H294 Proteasome beta-type subunit 1; proteasome assembl 100.0
1ryp_B250 20S proteasome; multicatalytic proteinase, protein 100.0
1j2p_A246 Alpha-ring, proteasome alpha subunit; hydrolase; 2 100.0
1ryp_G244 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_I234 20S proteasome; cell cycle, immune response, prote 100.0
3h4p_A264 Proteasome subunit alpha; core particle, cytoplasm 100.0
3nzj_F288 Proteasome component C1; ubiquitin, protein degrad 100.0
2jay_A291 Proteasome; hydrolase; 1.99A {Mycobacterium tuberc 100.0
3mi0_A248 Proteasome subunit alpha; enzyme inhibitors, lacto 100.0
1ryp_F233 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_F263 20S proteasome; cell cycle, immune response, prote 100.0
1q5q_A259 Proteasome alpha-type subunit 1; proteasome assemb 100.0
2z3b_A180 ATP-dependent protease HSLV; N-terminal nucleophIl 100.0
1m4y_A171 ATP-dependent protease HSLV; N-terminal catalytic 100.0
1g3k_A174 ATP-dependent protease HSLV; hydrolase; 1.90A {Hae 100.0
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Back     alignment and structure
Probab=100.00  E-value=8.8e-47  Score=295.88  Aligned_cols=176  Identities=53%  Similarity=0.901  Sum_probs=167.2

Q ss_pred             CCcccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCC
Q 029913            1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER   80 (185)
Q Consensus         1 ~~~~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (185)
                      ||||.++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++.+++
T Consensus         1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (205)
T 1iru_J            1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR   80 (205)
T ss_dssp             -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            79999999999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccCCceeeeeeEEeecC-CCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCH
Q 029913           81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVC  159 (185)
Q Consensus        81 ~~~~~~la~~l~~~~~~~r~~P~~vs~llaG~d~-~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~  159 (185)
                      +++++.+|+++++++|++|..||++++|+||||+ +++|+||.+||+|++.++.+|.|+|+|+++++++||+.|+++||+
T Consensus        81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~  160 (205)
T 1iru_J           81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP  160 (205)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence            9999999999999999988789999999999995 478999999999998666558999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 029913          160 NIRFFSLLLDIRMLFHG  176 (185)
Q Consensus       160 eea~~l~~~al~~~~~~  176 (185)
                      |||++++++||+.....
T Consensus       161 eea~~l~~~al~~~~~~  177 (205)
T 1iru_J          161 DHLFETISQAMLNAVDR  177 (205)
T ss_dssp             HHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999987764
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Back     alignment and structure
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Back     alignment and structure
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Back     alignment and structure
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Back     alignment and structure
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Back     alignment and structure
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Back     alignment and structure
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Back     alignment and structure
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Back     alignment and structure
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Back     alignment and structure
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Back     alignment and structure
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Back     alignment and structure
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Back     alignment and structure
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Back     alignment and structure
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Back     alignment and structure
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Back     alignment and structure
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5 Back     alignment and structure
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Back     alignment and structure
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Back     alignment and structure
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Back     alignment and structure
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Back     alignment and structure
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Back     alignment and structure
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Back     alignment and structure
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2 Back     alignment and structure
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Back     alignment and structure
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Back     alignment and structure
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Back     alignment and structure
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Back     alignment and structure
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Back     alignment and structure
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Back     alignment and structure
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Back     alignment and structure
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Back     alignment and structure
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Back     alignment and structure
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Back     alignment and structure
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Back     alignment and structure
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Back     alignment and structure
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Back     alignment and structure
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Back     alignment and structure
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Back     alignment and structure
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F* Back     alignment and structure
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Back     alignment and structure
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Back     alignment and structure
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Back     alignment and structure
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Back     alignment and structure
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Back     alignment and structure
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Back     alignment and structure
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Back     alignment and structure
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 185
d1iruj_204 d.153.1.4 (J:) Proteasome beta subunit (catalytic) 1e-27
d1rypj_204 d.153.1.4 (J:) Proteasome beta subunit (catalytic) 6e-26
d1ryp1_222 d.153.1.4 (1:) Proteasome beta subunit (catalytic) 7e-24
d1rypl_212 d.153.1.4 (L:) Proteasome beta subunit (catalytic) 2e-22
d1yarh1203 d.153.1.4 (H:1-203) Proteasome beta subunit (catal 4e-22
d1j2qh_202 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 1e-21
d1iruh_202 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 1e-21
d1ryph_205 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 2e-21
d1iru1_213 d.153.1.4 (1:) Proteasome beta subunit (catalytic) 2e-21
d1ryp2_233 d.153.1.4 (2:) Proteasome beta subunit (catalytic) 3e-21
d1irul_201 d.153.1.4 (L:) Proteasome beta subunit (catalytic) 5e-21
d1rypk_198 d.153.1.4 (K:) Proteasome beta subunit (catalytic) 7e-21
d1irue_234 d.153.1.4 (E:) Proteasome alpha subunit (non-catal 7e-20
d1irug_245 d.153.1.4 (G:) Proteasome alpha subunit (non-catal 5e-19
d1rypc_244 d.153.1.4 (C:) Proteasome alpha subunit (non-catal 7e-19
d1yara1221 d.153.1.4 (A:13-233) Proteasome alpha subunit (non 1e-18
d1q5qa_227 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 1e-17
d1irui_220 d.153.1.4 (I:) Proteasome beta subunit (catalytic) 2e-17
d1iruk_199 d.153.1.4 (K:) Proteasome beta subunit (catalytic) 2e-17
d1rype_242 d.153.1.4 (E:) Proteasome alpha subunit (non-catal 2e-17
d1rypa_243 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 3e-17
d1rypi_222 d.153.1.4 (I:) Proteasome beta subunit (catalytic) 6e-17
d1rypb_250 d.153.1.4 (B:) Proteasome alpha subunit (non-catal 9e-17
d1iruc_250 d.153.1.4 (C:) Proteasome alpha subunit (non-catal 2e-16
d1rypd_241 d.153.1.4 (D:) Proteasome alpha subunit (non-catal 3e-16
d1q5qh_224 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 4e-16
d1iru2_217 d.153.1.4 (2:) Proteasome beta subunit (catalytic) 2e-15
d1irud_243 d.153.1.4 (D:) Proteasome alpha subunit (non-catal 4e-15
d1rypf_233 d.153.1.4 (F:) Proteasome alpha subunit (non-catal 6e-15
d1j2pa_243 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 7e-15
d1rypg_244 d.153.1.4 (G:) Proteasome alpha subunit (non-catal 8e-15
d1iruf_238 d.153.1.4 (F:) Proteasome alpha subunit (non-catal 9e-15
d1irua_244 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 6e-14
d1irub_233 d.153.1.4 (B:) Proteasome alpha subunit (non-catal 6e-13
d1m4ya_171 d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma 4e-09
d2z3ba1180 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus 4e-08
d1g3ka_173 d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i 1e-05
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (251), Expect = 1e-27
 Identities = 89/157 (56%), Positives = 117/157 (74%), Gaps = 1/157 (0%)

Query: 2   SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQ 61
           SI  YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD Q
Sbjct: 1   SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQ 60

Query: 62  TLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKP-FI 120
           T+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +    FI
Sbjct: 61  TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFI 120

Query: 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDM 157
           C++D IG   +  DFVV+GT  E +YG CE++++P+M
Sbjct: 121 CSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNM 157
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204 Back     information, alignment and structure
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 Back     information, alignment and structure
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203 Back     information, alignment and structure
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202 Back     information, alignment and structure
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205 Back     information, alignment and structure
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213 Back     information, alignment and structure
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 Back     information, alignment and structure
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201 Back     information, alignment and structure
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198 Back     information, alignment and structure
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245 Back     information, alignment and structure
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Back     information, alignment and structure
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221 Back     information, alignment and structure
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227 Back     information, alignment and structure
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220 Back     information, alignment and structure
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199 Back     information, alignment and structure
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242 Back     information, alignment and structure
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243 Back     information, alignment and structure
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250 Back     information, alignment and structure
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250 Back     information, alignment and structure
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241 Back     information, alignment and structure
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224 Back     information, alignment and structure
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217 Back     information, alignment and structure
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243 Back     information, alignment and structure
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 Back     information, alignment and structure
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243 Back     information, alignment and structure
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Back     information, alignment and structure
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238 Back     information, alignment and structure
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244 Back     information, alignment and structure
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233 Back     information, alignment and structure
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171 Back     information, alignment and structure
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180 Back     information, alignment and structure
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
d1irul_201 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1rypj_204 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1ryph_205 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1yarh1203 Proteasome beta subunit (catalytic) {Archaeon Ther 100.0
d1iruj_204 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1rypk_198 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1ryp1_222 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1rypl_212 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1j2qh_202 Proteasome beta subunit (catalytic) {Archaeon Arch 100.0
d1rypc_244 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1iruh_202 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1irug_245 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1iruc_250 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1yara1221 Proteasome alpha subunit (non-catalytic) {Archaeon 100.0
d1irui_220 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1rype_242 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1rypi_222 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1iru1_213 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1ryp2_233 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1irue_234 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1j2pa_243 Proteasome alpha subunit (non-catalytic) {Archaeon 100.0
d1irua_244 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1rypb_250 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1rypg_244 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1rypd_241 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1irud_243 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1rypa_243 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1iru2_217 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1irub_233 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1rypf_233 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1iruf_238 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1q5qa_227 Proteasome alpha subunit (non-catalytic) {Rhodococ 100.0
d1iruk_199 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1q5qh_224 Proteasome beta subunit (catalytic) {Rhodococcus e 100.0
d2z3ba1180 HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14 99.92
d1m4ya_171 HslV (ClpQ) protease {Thermotoga maritima [TaxId: 99.91
d1g3ka_173 HslV (ClpQ) protease {Haemophilus influenzae [TaxI 99.9
d1cuka148 DNA helicase RuvA subunit, C-terminal domain {Esch 83.41
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-43  Score=275.59  Aligned_cols=166  Identities=16%  Similarity=0.188  Sum_probs=160.8

Q ss_pred             ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029913            9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA   88 (185)
Q Consensus         9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (185)
                      ||+|||+++||||||+|+|++.|.++.+++.+|||+|+++++|+++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus         1 TT~igi~~~dgVvlaaD~~~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (201)
T d1irul_           1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS   80 (201)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCCEeecCCcccEEEeCCcEEEEEcCccchHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029913           89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL  168 (185)
Q Consensus        89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~  168 (185)
                      +++++++|.+|.+||+++++++|+|+ .+|+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||.+||++++++
T Consensus        81 ~~l~~~~~~~~~~p~~~~~lvaG~d~-~~~~l~~~d~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ms~eea~~l~~~  158 (201)
T d1irul_          81 KLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGA-TFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARR  158 (201)
T ss_dssp             HHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECS-EEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCCceEEEEEEEEec-CCceEEEEccCceEEEee-eEEecCchHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence            99999999988899999999999997 689999999999999997 9999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 029913          169 DIRMLFHG  176 (185)
Q Consensus       169 al~~~~~~  176 (185)
                      ||+.+.+.
T Consensus       159 ~l~~~~~~  166 (201)
T d1irul_         159 AIYQATYR  166 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987664
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Back     information, alignment and structure
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Back     information, alignment and structure
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure