Citrus Sinensis ID: 029914

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKV
Secondary Structure (PSIPRED)
ccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccEEEccccccccccccccccccEEEEcccccccccccccccccccEEcccccccHHHHHccccccEEEEEccccEEEcccccccEEEcccEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
masasatmtiipskfqnielfsprscrnytlchpnapksvnffhfqnsscffvrpslycnplMRRVQHVLKTVSAvdsgvevsitepedlitvkdAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLarsappipgfrrekggkttkvPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKV
Flexible Loop (DISEMBL)
masasatmtiipskfqniELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVsavdsgvevsitepedlitvkdakivvesqdedkiqvrvdltgdatqRVFDKVLtnlarsappipgfrrekggkttkvPRDFLIqilgeervtkfvvqeivrstltdytkkv
Low Complexity Region (SEG)
MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKV
Disordered region (IsUnstruct)
********TIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLAR****************TKVPRDFLIQILGEERVTKFVVQEIVRSTLT******
Disordered Region (DISOPRED)
***********PSKFQNIELFSPRSCRNYTLCHP****************FFV******************************************************IQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGG*TTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK*
Disordered Region (DISEMBL)
MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRST********
Disordered Region (DISPRO)
******TMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
B2IT89	480	Trigger factor OS=Nostoc	yes	no	0.383	0.147	0.320	0.0001
B7JW76	455	Trigger factor OS=Cyanoth	yes	no	0.405	0.164	0.292	0.0003
B1XL18	454	Trigger factor OS=Synecho	yes	no	0.405	0.165	0.292	0.0003
Q3M725	471	Trigger factor OS=Anabaen	yes	no	0.383	0.150	0.294	0.0003
Q8YQX9	471	Trigger factor OS=Nostoc	yes	no	0.383	0.150	0.294	0.0004

>sp|B2IT89|TIG_NOSP7 Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tig PE=3 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 7/78 (8%)

Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
           +I + +++T + T++ +++V+ NLA +A  IPGFRR       KVPR  L+Q LG  R+ 
Sbjct: 12  QIGLEIEITPEITKQTYEQVIKNLASTAN-IPGFRR------GKVPRPILLQRLGTTRIK 64

Query: 167 KFVVQEIVRSTLTDYTKK 184
              ++E+++  +    K+
Sbjct: 65  AAALEELIQDGIEQAVKQ 82

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.
Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|B7JW76|TIG_CYAP8 Trigger factor OS=Cyanothece sp. (strain PCC 8801) GN=tig PE=3 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 7/82 (8%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           K+  E   + +I + ++++ +A+++ ++  +  LAR+A  IPGFR+       KVPR  L
Sbjct: 2   KVTQEKLPDSQIGLEIEISAEASKKAYETKVNTLARTAN-IPGFRK------GKVPRQIL 54

Query: 157 IQILGEERVTKFVVQEIVRSTL 178
           +Q +G E +    +QE++  +L
Sbjct: 55  LQRIGTEYIKATTLQELIEDSL 76

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|B1XL18|TIG_SYNP2 Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tig PE=3 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           K++ E     ++ + +++  D TQ+ +D  +  LAR+   +PGFR+       KVP+  L
Sbjct: 2   KVIQEKLPASQVGLEIEVPADVTQKAYDDTVRKLARTVN-LPGFRK------GKVPKQIL 54

Query: 157 IQILGEERVTKFVVQEIVRSTL 178
           IQ LG  R+   V+++++  +L
Sbjct: 55  IQRLGPNRIKASVLEDLIDDSL 76

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3M725|TIG_ANAVT Trigger factor OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tig PE=3 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 7/78 (8%)

Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
           +I + +++T + TQ+ +++V+ NL+R+   IPGFR+       KVPR  L+Q LG+  + 
Sbjct: 12  QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRK------GKVPRQVLLQRLGKTHIK 64

Query: 167 KFVVQEIVRSTLTDYTKK 184
              ++E+++  +    K+
Sbjct: 65  AAALEELLQDGIEQAIKQ 82

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8YQX9|TIG_NOSS1 Trigger factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tig PE=3 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 7/78 (8%)

Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
           +I + +++T + TQ+ +++V+ NL+R+   IPGFR+       KVPR  L+Q LG+  + 
Sbjct: 12  QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRK------GKVPRQVLLQRLGKTHIK 64

Query: 167 KFVVQEIVRSTLTDYTKK 184
              ++E+++  +    K+
Sbjct: 65  AAALEELLQDGIEQAIKQ 82

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
225434092	232	PREDICTED: uncharacterized protein LOC10	0.945	0.754	0.538	2e-41
296084278	440	unnamed protein product [Vitis vinifera]	0.945	0.397	0.527	1e-40
255579456	216	conserved hypothetical protein [Ricinus	0.854	0.731	0.558	1e-40
224122010	123	predicted protein [Populus trichocarpa]	0.562	0.845	0.723	4e-37
388492748	233	unknown [Lotus japonicus]	0.697	0.553	0.531	3e-36
449445840	247	PREDICTED: uncharacterized protein LOC10	0.616	0.461	0.626	3e-36
388513321	221	unknown [Medicago truncatula]	0.643	0.538	0.558	3e-34
255636592	183	unknown [Glycine max]	0.875	0.885	0.426	7e-30
414879252	226	TPA: hypothetical protein ZEAMMB73_39555	0.924	0.756	0.404	3e-26
357126306	239	PREDICTED: uncharacterized protein LOC10	0.794	0.615	0.432	5e-26

>gi|225434092|ref|XP_002275949.1| PREDICTED: uncharacterized protein LOC100247585 [Vitis vinifera]

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 129/182 (70%), Gaps = 7/182 (3%)

Query: 6   ATMTI-IPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLY-CNPLM 63
           A MT+ I S+  N   F  R C ++ +   N   S++F H Q   C  +   LY CN   
Sbjct: 2   ACMTMAISSQSLNFNRFFVRCCHDHVISCQNT-TSISFPHRQQDLCGRL---LYPCNLHQ 57

Query: 64  RRVQHVLKTVSAVDSGVEVSITEPEDL-ITVKDAKIVVESQDEDKIQVRVDLTGDATQRV 122
             ++ + K +SAV SG + SI +P+D  IT+K+AKIVVESQ++D+IQ+RVD+ G  TQRV
Sbjct: 58  GSLRFLSKPISAVGSGSKASIIDPKDNDITIKNAKIVVESQEDDEIQLRVDVAGVDTQRV 117

Query: 123 FDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYT 182
           FD VLTNLARSAPPIPGFRR+KGGKT+ VP+ FL+QILGEERVTKFV+QEI+ +T++DY 
Sbjct: 118 FDHVLTNLARSAPPIPGFRRQKGGKTSNVPKSFLLQILGEERVTKFVIQEIITATVSDYV 177

Query: 183 KK 184
            K
Sbjct: 178 MK 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084278|emb|CBI24666.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/182 (52%), Positives = 127/182 (69%), Gaps = 7/182 (3%)

Query: 6   ATMTI-IPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLY-CNPLM 63
           A MT+ I S+  N   F  R C ++ +   N   S++F H Q   C  +   LY CN   
Sbjct: 210 ACMTMAISSQSLNFNRFFVRCCHDHVISCQNTT-SISFPHRQQDLCGRL---LYPCNLHQ 265

Query: 64  RRVQHVLKTVSAVDSGVEVSITEPEDL-ITVKDAKIVVESQDEDKIQVRVDLTGDATQRV 122
             ++ + K +SAV SG + SI +P+D  IT+K+AKIVVESQ++D+IQ+RVD+ G  TQRV
Sbjct: 266 GSLRFLSKPISAVGSGSKASIIDPKDNDITIKNAKIVVESQEDDEIQLRVDVAGVDTQRV 325

Query: 123 FDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYT 182
           FD VLTNLARSAPPIPGFRR+KGG +  VP+ FL+QILGEERVTKFV+QEI+ +T++DY 
Sbjct: 326 FDHVLTNLARSAPPIPGFRRQKGGNSLYVPKSFLLQILGEERVTKFVIQEIITATVSDYV 385

Query: 183 KK 184
            K
Sbjct: 386 MK 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579456|ref|XP_002530571.1| conserved hypothetical protein [Ricinus communis] gi|223529870|gb|EEF31801.1| conserved hypothetical protein [Ricinus communis]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/163 (55%), Positives = 116/163 (71%), Gaps = 5/163 (3%)

Query: 25  SCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCN--PLMRRVQHVLKTVSAVDSGVEV 82
           S +NY  C+ N     N  +   ++ F +R     N     R ++HV K +SAV SG+E 
Sbjct: 10  SLKNYCSCNYNCTLRNN--NITTTTSFKLRLPFSSNYKGKKRVLEHVFKPISAVGSGLET 67

Query: 83  SITEPED-LITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFR 141
           + T+P+D  IT+K+AK+VVES  E+KIQ+RVDL+GD T+ VF KVL NLAR+APPIPGFR
Sbjct: 68  TFTDPKDNAITLKNAKVVVESMQENKIQLRVDLSGDETEIVFSKVLANLARTAPPIPGFR 127

Query: 142 REKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK 184
           REKGG    VPRDFL+QILGEERVTKFV+QEIV S++ DY KK
Sbjct: 128 REKGGDFRLVPRDFLLQILGEERVTKFVIQEIVSSSVADYVKK 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122010|ref|XP_002330708.1| predicted protein [Populus trichocarpa] gi|222872312|gb|EEF09443.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 91/105 (86%), Gaps = 1/105 (0%)

Query: 81  EVSITEP-EDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPG 139
           + SI E  E LI +K+ KIV+ESQ+EDK+QVRVDL+GD TQ+VF+K LT+LARSAPPIPG
Sbjct: 12  QASIAETNEKLIALKNVKIVIESQEEDKMQVRVDLSGDETQKVFNKALTDLARSAPPIPG 71

Query: 140 FRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK 184
           FRREKGGKTT VPR+FL+QILGE+RVT FV+QEIV ST+ DY KK
Sbjct: 72  FRREKGGKTTNVPREFLLQILGEDRVTNFVIQEIVTSTMADYVKK 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492748|gb|AFK34440.1| unknown [Lotus japonicus]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 106/143 (74%), Gaps = 14/143 (9%)

Query: 56  SLYCNPLMRR-------------VQHVLKTVSAVDSGVEVSITEP-EDLITVKDAKIVVE 101
           SL   P +RR             ++H+   +SAV+SG+E SIT+  E+   + +A+IV+E
Sbjct: 47  SLSLGPPLRRKSLDILSSSTRTTLRHLNTPISAVNSGLEASITDSDENSAILTNAQIVLE 106

Query: 102 SQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILG 161
           S+DE KIQ+RVDLTGD T+RVFD+ L +L R+APP+PGFR +KGGK++K+P+ FL+QILG
Sbjct: 107 SEDESKIQLRVDLTGDQTERVFDRTLISLGRTAPPVPGFRMQKGGKSSKIPKSFLVQILG 166

Query: 162 EERVTKFVVQEIVRSTLTDYTKK 184
           EERVTKFV+QEI+ ST+ +Y KK
Sbjct: 167 EERVTKFVIQEILNSTMANYAKK 189

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445840|ref|XP_004140680.1| PREDICTED: uncharacterized protein LOC101212225 [Cucumis sativus]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 100/115 (86%), Gaps = 1/115 (0%)

Query: 71  KTVSAVDSGVEVSITEPE-DLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTN 129
           K  S   SG+E +IT+ + + IT+K+AK+VVES++E+KIQ+RVDLTGD TQ+VFD+VLTN
Sbjct: 88  KPTSIASSGLEAAITDYKGNPITLKNAKVVVESEEENKIQLRVDLTGDETQKVFDQVLTN 147

Query: 130 LARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK 184
           LARSAPP+PGFR++KGGKT+ VP+ FL+++LG++RVTKF++QEI+ ST+ DY KK
Sbjct: 148 LARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFIIQEILNSTMVDYAKK 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513321|gb|AFK44722.1| unknown [Medicago truncatula]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 96/120 (80%), Gaps = 1/120 (0%)

Query: 66  VQHVLKTVSAVDSGVEVSITEPEDLIT-VKDAKIVVESQDEDKIQVRVDLTGDATQRVFD 124
           ++H+   +SAV+SG+E SIT+  D+   + DA +V E  D+++IQ+RVDLTG  TQ+VFD
Sbjct: 56  LRHLNTPISAVNSGLEASITDSNDISAFLTDATVVAEPGDDNRIQLRVDLTGVQTQKVFD 115

Query: 125 KVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK 184
           ++  NL R+APP+PGFR +KGGK++K+P+DFL+Q+LGEERVTKF +QEI+  T+ DYTKK
Sbjct: 116 RIPINLGRTAPPVPGFRMQKGGKSSKIPKDFLLQMLGEERVTKFAIQEILNCTMADYTKK 175

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636592|gb|ACU18634.1| unknown [Glycine max]

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 108/164 (65%), Gaps = 2/164 (1%)

Query: 1   MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCN 60
           MAS S ++T   + F        ++C  + L  PNA KS   F    +    +   +  +
Sbjct: 3   MASKSNSLTFGAACFATCPFSRTKTCCIHFLAIPNA-KSRATFSLGPTLSKRMSLGILSS 61

Query: 61  PLMRRVQHVLKTVSAVDSGVEVSITEPEDLITV-KDAKIVVESQDEDKIQVRVDLTGDAT 119
           P+     H++  +SA++SG+E SIT+  D+  +  +AKIVV+S+DE+KIQ+R DLTGD T
Sbjct: 62  PIETTPTHLITPISALNSGLEASITDSNDISAILANAKIVVDSEDENKIQLRADLTGDQT 121

Query: 120 QRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEE 163
           Q+VFD++LTNL R+APP+PGFR +KGGK++K+P+DFL + LG++
Sbjct: 122 QKVFDRILTNLGRTAPPVPGFRMQKGGKSSKIPKDFLYRCLGKD 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414879252|tpg|DAA56383.1| TPA: hypothetical protein ZEAMMB73_395550, partial [Zea mays]

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 104/178 (58%), Gaps = 7/178 (3%)

Query: 12  PSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRV--QHV 69
           PS    ++L S   C   +  H   PK     H    +C   +   + + L+     +  
Sbjct: 14  PSPLPKVQLIS---CPVDSFQHALNPKVTGQVHAHTKTCGACKCPTHIHGLLVSAGGRRT 70

Query: 70  LKTVSAVDSGVEVSITEPE--DLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 127
              VSAV SG   S+TE +    +++++ K  V S+D +KI VRV L G ATQ+VFD+ L
Sbjct: 71  FLPVSAVGSGQGSSVTEADRKSDLSLENVKTSVVSRDGEKINVRVQLPGKATQKVFDEAL 130

Query: 128 TNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKV 185
           T LAR APP+PGFR+ KGGKT+ +P   L+Q+LG+ RVTKFV+QEI+  T+ ++ KKV
Sbjct: 131 TFLARDAPPVPGFRKSKGGKTSNIPSSILLQMLGKSRVTKFVLQEILSITIEEFVKKV 188

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126306|ref|XP_003564829.1| PREDICTED: uncharacterized protein LOC100837766 isoform 3 [Brachypodium distachyon]

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 99/155 (63%), Gaps = 8/155 (5%)

Query: 36  APKSVNFFHFQ-NSSCFFVRPSLYCNPLM---RRVQHVLKTVSAVDSGVEVSITEPEDL- 90
           AP+   +  FQ    C   RP+     L+   R ++H    VSAV SG   S+ + E+  
Sbjct: 13  APRFRTYSQFQTGDGC--NRPTHAHGWLISTGRSLRHTFLPVSAVRSGRGSSVAQEEEKT 70

Query: 91  -ITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTT 149
            +++ + K  V S+D++ I +R+DL G ATQ+VFD+ LT+LAR APP+PGFRR KGGKT+
Sbjct: 71  GLSLDNFKTTVVSRDDENINLRIDLPGKATQKVFDEALTSLARDAPPVPGFRRSKGGKTS 130

Query: 150 KVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK 184
            +P   L+ +LG+ RVTKF++QEI+  T+ D+ KK
Sbjct: 131 NIPSSILLAMLGKSRVTKFILQEILSVTVGDFVKK 165

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:505006279	199	AT2G30695 "AT2G30695" [Arabido	0.718	0.668	0.391	3.6e-18

TAIR|locus:505006279 AT2G30695 "AT2G30695" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 56/143 (39%), Positives = 80/143 (55%)

Query:    45 FQNSSCFFVRPSLYC--NPLMRRVQH-VLKTVSAVDSGVEVSITEPEDLITVKDAKIVVE 101
             FQ SS F   P  Y     L  R  +     V A  S VE S  +   LIT    K+  E
Sbjct:    24 FQFSS-FLTLPPTYSVQQKLCTRATNRQFVAVCAAPSDVETSSKDESVLIT----KVETE 78

Query:   102 SQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILG 161
             + +E K+ V+V  +G+ TQ VF+ V   +  +A PIPGFRR KGGKT  +P+D L++ILG
Sbjct:    79 TSNEVKVHVQV--SGEKTQTVFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEILG 136

Query:   162 EERVTKFVVQEIVRSTLTDYTKK 184
               +V K V+++++ S + DY K+
Sbjct:   137 YSKVYKQVIKKLINSAIEDYVKQ 159


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      185       185   0.00080  110 3  11 22  0.41    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  559 (59 KB)
  Total size of DFA:  139 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.92u 0.10s 18.02t   Elapsed:  00:00:02
  Total cpu time:  17.92u 0.10s 18.02t   Elapsed:  00:00:02
  Start:  Fri May 10 00:22:11 2013   End:  Fri May 10 00:22:13 2013

GO:0003674 "molecular_function" evidence=ND

GO:0006457 "protein folding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
pfam05697	145	pfam05697, Trigger_N, Bacterial trigger factor pro	6e-06
COG0544	441	COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans	2e-04

>gnl|CDD|218700 pfam05697, Trigger_N, Bacterial trigger factor protein (TF)

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           K+ VE  +  ++++ V++  +  +   DK L  LA+    IPGFR  KG    KVPR  +
Sbjct: 2   KVTVEKLEGLEVKLTVEVPAEEVEEAVDKALKELAKKV-KIPGFR--KG----KVPRSVV 54

Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKK 184
            +  G+E + +  ++++++    +  K+
Sbjct: 55  KKRYGKE-IYQEALEDLLQEAYEEALKE 81

In the E. coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains. This family represents the N-terminal region of the protein. Length = 145

>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 8/84 (9%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           K+ VE  +  ++++ V++  +  ++  DK L  LA+    IPGFR  KG    KVPR  +
Sbjct: 2   KVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKV-KIPGFR--KG----KVPRKVI 54

Query: 157 IQILGEERVTKFVVQEIVRSTLTD 180
            Q  GE  V + V+ E++     +
Sbjct: 55  EQRYGEA-VRQDVLNELLPEAFEE 77

Length = 441

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
PF05697	145	Trigger_N: Bacterial trigger factor protein (TF);	99.85
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	99.75
PRK01490	435	tig trigger factor; Provisional	99.75
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	99.6

>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state

Probab=99.85  E-value=9.3e-21  Score=148.67  Aligned_cols=81  Identities=26%  Similarity=0.607  Sum_probs=75.6

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (185)
Q Consensus        96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~  175 (185)
                      |+++++..+++.+.++|+|++++|++++++++++++++++ |||||||      |||.++++++||.+ |++++++++++
T Consensus         1 M~v~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~~~k~~~-ipGFRkG------K~P~~vi~~~~g~~-i~~~~~~~~~~   72 (145)
T PF05697_consen    1 MKVTVEKIEDSKVKLEVEVPAEEVEKAYEKALKELAKKVK-IPGFRKG------KAPRNVIEKRYGKE-IREEAIEELLQ   72 (145)
T ss_dssp             -EEEEEEESTTEEEEEEEE-HHHHHHHHHHHHHHHHTTTT-BTTS-TT------SS-HHHHHHHHCHH-HHHHHHHHHHH
T ss_pred             CccEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCCCCC------CCCHHHHHHHHHHH-HHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 9999999      89999999999996 99999999999


Q ss_pred             HHHHHHHhh
Q 029914          176 STLTDYTKK  184 (185)
Q Consensus       176 ~a~~eAvee  184 (185)
                      .+|.+|+++
T Consensus        73 ~~~~~~~~~   81 (145)
T PF05697_consen   73 EAYEEAIKE   81 (145)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999986

The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=5.1e-18  Score=156.72  Aligned_cols=81  Identities=31%  Similarity=0.563  Sum_probs=79.1

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (185)
Q Consensus        96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~  175 (185)
                      |++++++++++.+.|+|+||+++|++.++++|++++++++ |||||||      |||+++++++|| +.|++++++++|+
T Consensus         1 M~v~~e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v~-IpGFRkG------KvP~~ii~~ryg-~~v~~d~~~~ll~   72 (441)
T COG0544           1 MKVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKVK-IPGFRKG------KVPRKVIEQRYG-EAVRQDVLNELLP   72 (441)
T ss_pred             CCeeeeecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-CCCCCCC------CCCHHHHHHHHh-HHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999 9999999      999999999999 5799999999999


Q ss_pred             HHHHHHHhh
Q 029914          176 STLTDYTKK  184 (185)
Q Consensus       176 ~a~~eAvee  184 (185)
                      ++|.+|+++
T Consensus        73 ~~~~~a~~e   81 (441)
T COG0544          73 EAFEEAIKE   81 (441)
T ss_pred             HHHHHHHHH
Confidence            999999986

>PRK01490 tig trigger factor; Provisional

Probab=99.75  E-value=7e-18  Score=152.32  Aligned_cols=81  Identities=26%  Similarity=0.498  Sum_probs=79.0

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (185)
Q Consensus        96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~  175 (185)
                      |++++++.+++++.++|+||+++|++.+++++++++++++ |||||||      |||+++|+++||++ |++++++++|+
T Consensus         1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRkG------kvP~~ii~k~~g~~-i~~e~~~~li~   72 (435)
T PRK01490          1 MQVTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVR-IPGFRKG------KVPRKIVEQRYGES-VRQEALNDLLP   72 (435)
T ss_pred             CcceEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHHhhCc-CCCccCC------CCCHHHHHHHHhHH-HHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999 9999999      99999999999985 99999999999


Q ss_pred             HHHHHHHhh
Q 029914          176 STLTDYTKK  184 (185)
Q Consensus       176 ~a~~eAvee  184 (185)
                      ++|.+|+++
T Consensus        73 ~~~~~~i~~   81 (435)
T PRK01490         73 EAYEEAIKE   81 (435)
T ss_pred             HHHHHHHHH
Confidence            999999976

>TIGR00115 tig trigger factor

Probab=99.60  E-value=2.8e-15  Score=134.28  Aligned_cols=69  Identities=28%  Similarity=0.551  Sum_probs=66.1

Q ss_pred             EEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhh
Q 029914          108 IQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK  184 (185)
Q Consensus       108 ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~~a~~eAvee  184 (185)
                      +.|+|+||++++++.+++++++++++++ |||||||      |||+++|+++||+ .|+.++++++++++|.+|+++
T Consensus         1 ~~l~v~v~~~~~~~~~~k~~~~~~k~~~-ipGFRkG------KvP~~~i~k~~g~-~i~~e~~~~li~~~~~~~~~~   69 (408)
T TIGR00115         1 RKLTVEVPAEEVEEEVDKALKELAKKVK-IPGFRKG------KVPRSVVEKRYGK-EVRQEALNELLQEAFSEAVKE   69 (408)
T ss_pred             CeEEEEECHHHHHHHHHHHHHHHHhhCC-CCCccCC------CCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999 9999999      9999999999998 499999999999999999975

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
2nsc_A	109	Trigger factor, TF; chaperone; 2.20A {Thermotoga m	4e-06
2d3o_1	112	Trigger factor, TF; ribosome, nascent chain, prote	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A Length = 109

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           ++    +D++++ +      +   +  DK +  L +    IPGFR  KG    ++P++ L
Sbjct: 2   EVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRV-EIPGFR--KG----RIPKNVL 54

Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKV 185
              LGEE       +  +   +      +
Sbjct: 55  KMKLGEE-----FQEYTLDFLMDLIPDTL 78

>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 Length = 112

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 100 VESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQI 159
           + S++ +K++ +V +      R +D+V   LAR    +PGFR   G    K PR  +   
Sbjct: 4   LISKEGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFR--PG----KAPRKVIENR 56

Query: 160 LGEERVTKFVVQEIVRSTLTD 180
           +G+  V   V   ++ +  + 
Sbjct: 57  VGKGYVESQVRDRLLETHYSQ 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 26/176 (14%), Positives = 50/176 (28%), Gaps = 49/176 (27%)

Query: 30  TLCH-------------PNAPKSVNFFHFQNSSCFFVRPSLYCNPL--MRRVQHVLKTVS 74
            L +              N    ++    +       +P  Y N L  +  VQ+  K  +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNA-KAWN 260

Query: 75  AVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVD-----LTGDATQRVFDKVLTN 129
           A +   ++       L+T +  ++           + +D     LT D  + +  K L  
Sbjct: 261 AFNLSCKI-------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 130 LARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKV 185
             +  P     R          P    + I+ E      +   +      D  K V
Sbjct: 314 RPQDLP-----REVLTTN----P--RRLSIIAE-----SIRDGLATW---DNWKHV 350

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
1p9y_A	121	Trigger factor, TF; alpha-beta protein, isomerase;	99.9
2nsc_A	109	Trigger factor, TF; chaperone; 2.20A {Thermotoga m	99.9
2d3o_1	112	Trigger factor, TF; ribosome, nascent chain, prote	99.88
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.8
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.78
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	99.7

>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*

Probab=99.90  E-value=3e-23  Score=159.49  Aligned_cols=82  Identities=23%  Similarity=0.382  Sum_probs=79.4

Q ss_pred             CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 029914           95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV  174 (185)
Q Consensus        95 ~MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI  174 (185)
                      .|+++++++++++++|+|+|++++++++++++|++++++++ |||||||      |||+++|+++||+ .|++|+++++|
T Consensus         3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v~-ipGFRkG------KvP~~vi~k~yG~-~v~~ea~~~~i   74 (121)
T 1p9y_A            3 HMQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRKG------KVPMNIVAQRYGA-SVRQDVLGDLM   74 (121)
T ss_dssp             -CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCTT------CSCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-cCCcCCC------CCCHHHHHHHHHH-HHHHHHHHHHH
Confidence            49999999999999999999999999999999999999999 9999999      9999999999998 59999999999


Q ss_pred             HHHHHHHHhh
Q 029914          175 RSTLTDYTKK  184 (185)
Q Consensus       175 ~~a~~eAvee  184 (185)
                      +++|.+|+++
T Consensus        75 ~~~~~~ai~e   84 (121)
T 1p9y_A           75 SRNFIDAIIK   84 (121)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999986

>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A

Probab=99.90  E-value=1.5e-23  Score=158.33  Aligned_cols=80  Identities=20%  Similarity=0.427  Sum_probs=78.1

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (185)
Q Consensus        96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~  175 (185)
                      |+++++++++++++|+|+|++++++++++++|++++++++ |||||||      |||+++|+++||+ .|++|+++++|+
T Consensus         1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRkG------KvP~~vi~k~yG~-~v~~ea~~~~i~   72 (109)
T 2nsc_A            1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRKG------RIPKNVLKMKLGE-EFQEYTLDFLMD   72 (109)
T ss_dssp             CEEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTCC-CTTSCTT------CCCHHHHHHHHGG-GHHHHHHHHHHT
T ss_pred             CceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccCC-CCCcCCC------CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 9999999      9999999999997 699999999999


Q ss_pred             HHHHHHHhh
Q 029914          176 STLTDYTKK  184 (185)
Q Consensus       176 ~a~~eAvee  184 (185)
                      + |.+|+++
T Consensus        73 ~-~~~ai~e   80 (109)
T 2nsc_A           73 L-IPDTLKD   80 (109)
T ss_dssp             T-HHHHTTT
T ss_pred             H-HHHHHHH
Confidence            9 9999986

>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7

Probab=99.88  E-value=8.7e-24  Score=160.36  Aligned_cols=81  Identities=22%  Similarity=0.467  Sum_probs=70.0

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (185)
Q Consensus        96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~  175 (185)
                      |++++++ ++++++|+|+|++++++++++++|++++++++ |||||||      |||+++|+++||++.|++|+++++|+
T Consensus         1 M~v~~e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRkG------KvP~~vi~k~yG~~~v~~ea~~~~i~   72 (112)
T 2d3o_1            1 MAELISK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFRPG------KAPRKVIENRVGKGYVESQVRDRLLE   72 (112)
T ss_dssp             ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSC-BTTBCTT------CCCSTTHHHHTTTTSSHHHHHHHHHH
T ss_pred             CceEEEc-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCcCCC------CCCHHHHHHHhCHHHHHHHHHHHHHH
Confidence            8899999 99999999999999999999999999999999 9999999      99999999999955799999999999


Q ss_pred             HHHHHHHhh
Q 029914          176 STLTDYTKK  184 (185)
Q Consensus       176 ~a~~eAvee  184 (185)
                      ++|.+|+++
T Consensus        73 ~~~~~ai~e   81 (112)
T 2d3o_1           73 THYSQGLRE   81 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999986

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.80  E-value=1.8e-19  Score=161.08  Aligned_cols=82  Identities=20%  Similarity=0.383  Sum_probs=79.9

Q ss_pred             CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 029914           95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV  174 (185)
Q Consensus        95 ~MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI  174 (185)
                      .|+++++++++++++|+|+||+++++++++++|++++++++ |||||||      |||+++|+++||+ .|++++++++|
T Consensus         3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRkG------KvP~~~i~k~yG~-~v~~ea~~~~~   74 (392)
T 1t11_A            3 HMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRKG------KVPMKMVAKMYGK-AVRQDVLGEVM   74 (392)
T ss_dssp             CCEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCSS------CCCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccCC-CCCCCCC------CCCHHHHHHHHhH-HHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999 9999999      9999999999996 69999999999


Q ss_pred             HHHHHHHHhh
Q 029914          175 RSTLTDYTKK  184 (185)
Q Consensus       175 ~~a~~eAvee  184 (185)
                      +++|.+|+++
T Consensus        75 ~~~~~~ai~e   84 (392)
T 1t11_A           75 QRHFIEAIVK   84 (392)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999986

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.78  E-value=3.1e-19  Score=161.16  Aligned_cols=81  Identities=25%  Similarity=0.405  Sum_probs=79.1

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (185)
Q Consensus        96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~  175 (185)
                      |+++++++++++++|+|+||+++++++++++|++++++++ |||||||      |||+++|+++||+ .|++++++++|+
T Consensus         1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRkG------KvP~~vi~~~yG~-~v~~ea~~~~~~   72 (432)
T 1w26_A            1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGFRKG------KVPMNIVAQRYGA-SVRQDVLGDLMS   72 (432)
T ss_dssp             CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTT-CGGGCCS------SSCHHHHHHHHCT-TTHHHHHHHHHH
T ss_pred             CceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhCC-CCCcCCC------CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 9999999      9999999999997 699999999999


Q ss_pred             HHHHHHHhh
Q 029914          176 STLTDYTKK  184 (185)
Q Consensus       176 ~a~~eAvee  184 (185)
                      ++|.+|+++
T Consensus        73 ~~~~~ai~e   81 (432)
T 1w26_A           73 RNFIDAIIK   81 (432)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999986

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=99.70  E-value=7.2e-18  Score=152.47  Aligned_cols=77  Identities=18%  Similarity=0.396  Sum_probs=71.5

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (185)
Q Consensus        96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~  175 (185)
                      |++++++.+++.+.|+|+||+++++++++++|++++++++ |||||||      |||+.||+++||+ .++.++++.+++
T Consensus         1 M~v~~~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v~-ipGFRkG------KvP~~vi~k~yG~-~v~~ev~~~l~~   72 (433)
T 3gty_X            1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRKG------RIPKNVLKMKLGE-EFQEYTLDFLMD   72 (433)
T ss_dssp             CEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCC-CCC--CC------CCCSHHHHTTSTT-HHHHHHHHHHHT
T ss_pred             CceEEEEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCC-CCCCCCC------CCcHHHHHHHhhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 9999999      9999999999999 599999999998


Q ss_pred             HHHHH
Q 029914          176 STLTD  180 (185)
Q Consensus       176 ~a~~e  180 (185)
                      .+|..
T Consensus        73 ~~~~~   77 (433)
T 3gty_X           73 LIPDT   77 (433)
T ss_dssp             TSTTT
T ss_pred             HHHHH
Confidence            87643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1p9ya_	117	Trigger factor ribosome-binding domain {Escherichi	99.88
d1t11a2	129	Trigger factor ribosome-binding domain {Vibrio cho	99.85
d2j0wa3	64	Aspartokinase {Escherichia coli [TaxId: 562]}	86.49

>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=9.8e-23  Score=153.81  Aligned_cols=81  Identities=23%  Similarity=0.385  Sum_probs=79.3

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (185)
Q Consensus        96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~  175 (185)
                      |+++++++++++++|+|+|+++++++.+++++++++++++ |||||||      |||+++|+++||+ +|++|+++++|+
T Consensus         1 M~v~v~~~~~~~~~l~i~v~~~~v~~~~~~~~~~~~k~~~-ipGFRkG------KvP~~vi~k~yg~-~i~~e~~~~li~   72 (117)
T d1p9ya_           1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRKG------KVPMNIVAQRYGA-SVRQDVLGDLMS   72 (117)
T ss_dssp             CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCTT------CSCHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CceEEEecCCCEEEEEEEECHHHHHHHHHHHHHHHHhcCC-CCCcCCC------CccHHHHHHHHhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 9999999      9999999999998 699999999999


Q ss_pred             HHHHHHHhh
Q 029914          176 STLTDYTKK  184 (185)
Q Consensus       176 ~a~~eAvee  184 (185)
                      +.|.+|+++
T Consensus        73 ~~~~~al~e   81 (117)
T d1p9ya_          73 RNFIDAIIK   81 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999986

>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.85  E-value=3.3e-21  Score=147.25  Aligned_cols=81  Identities=20%  Similarity=0.386  Sum_probs=79.2

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (185)
Q Consensus        96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~  175 (185)
                      |+++++++++++++|+|+|++++|++.+++++++++++++ |||||||      |||.++|+++||+ ++++++++++++
T Consensus         1 M~~~~~~~~~~~~~l~v~v~~~e~~~~~~~~~~~~~k~~~-ipGFRkG------KvP~~ii~k~~~~-~i~~e~~~~~i~   72 (129)
T d1t11a2           1 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRKG------KVPMKMVAKMYGK-AVRQDVLGEVMQ   72 (129)
T ss_dssp             CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCSS------CCCHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CceEEEEcCCcEEEEEEEECHHHHHHHHHHHHHHHHHhCC-CCCCCCC------CCcHHHHHHHhhh-hHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 9999999      9999999999997 699999999999


Q ss_pred             HHHHHHHhh
Q 029914          176 STLTDYTKK  184 (185)
Q Consensus       176 ~a~~eAvee  184 (185)
                      ++|.+|+++
T Consensus        73 ~~~~~~l~e   81 (129)
T d1t11a2          73 RHFIEAIVK   81 (129)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999986

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=86.49  E-value=0.27  Score=31.67  Aligned_cols=59  Identities=12%  Similarity=0.170  Sum_probs=46.0

Q ss_pred             eceeccCCcccccCCccc-cccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 029914           72 TVSAVDSGVEVSITEPED-LITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL  130 (185)
Q Consensus        72 ~vsav~sg~~~s~~~~~~-~~s~~~MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkkl  130 (185)
                      =||.||+|+....-=..+ +-++.+.+|.+.....+++.+.+-|+.++.++++...-+.+
T Consensus         3 ~IsvvG~gm~~~~gi~arif~~L~~~nI~~i~~~~Se~~is~vV~~~d~~~Av~aLh~~F   62 (64)
T d2j0wa3           3 LVALIGNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNL   62 (64)
T ss_dssp             EEEEEESSCTTSSSHHHHHHSSCTTSCCCEEEESSCTTEEEEEEEGGGHHHHHHHHHHHH
T ss_pred             EEEEECCCcccCccHHHHHHHHHhhCCCeEEEEEcCccEEEEEEcHHHHHHHHHHHHHHh
Confidence            478999999755222223 35578888889999999999999999999999998766554