Citrus Sinensis ID: 029917

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MSSNKGKEVAEGSSSRSSTIATAAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRMTVKATNDHSSNFPMQ
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccHHcccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHcccHHHHHHHHHHHHHccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mssnkgkevaegsssrssTIATAAVAAasdqqspaplsryesqkrrdWNTFGQylrnqrppvalsqcnsnhVLDFLRYLDQFgktkvhlqgcvffgqpeppgpcscplkqaWGSLDALIGRLRAAYeengglpetnpfasGAIRIYLREVRdsqakargipykkkkkkrmtvkatndhssnfpmq
Flexible Loop (DISEMBL)
mssnkgkevaegsssrssTIATAAvaaasdqqspaplsryesqkrRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEengglpetnpfaSGAIRIYLrevrdsqakargipykkkkkkrmtvkatndhssnfpmq
Low Complexity Region (SEG)
MSSNKGKEVaegsssrsstiataavaaasdqqspaplsRYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYkkkkkkRMTVKATNDHSSNFPMQ
Disordered region (IsUnstruct)
***********************************************WNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLRE************************************
Disordered Region (DISOPRED)
************************************************NTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCV**GQPEPPGPCSCPLKQAWGSLDALIGRLRAA**************SGAIRIYLREVRDSQA******************************
Disordered Region (DISEMBL)
*******************************************KRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIP************************
Disordered Region (DISPRO)
*************************************SRYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYK*K********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSNKGKEVAEGSSSRSSTIATAAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRMTVKATNDHSSNFPMQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
224117042	176	predicted protein [Populus trichocarpa]	0.951	1.0	0.864	1e-83
224117036	176	predicted protein [Populus trichocarpa]	0.951	1.0	0.854	6e-82
225461669	220	PREDICTED: uncharacterized protein LOC10	0.951	0.8	0.827	6e-81
147776506	177	hypothetical protein VITISV_034817 [Viti	0.935	0.977	0.824	3e-79
255579066	197	conserved hypothetical protein [Ricinus	1.0	0.939	0.786	1e-77
388519073	179	unknown [Lotus japonicus]	0.951	0.983	0.762	8e-77
357452175	178	177 protein [Medicago truncatula] gi|355	0.956	0.994	0.814	8e-76
356544090	184	PREDICTED: uncharacterized protein LOC10	0.983	0.989	0.793	1e-75
351722645	194	uncharacterized protein LOC100527554 [Gl	0.978	0.932	0.748	1e-74
388493306	179	unknown [Lotus japonicus]	0.951	0.983	0.767	2e-73

>gi|224117042|ref|XP_002331815.1| predicted protein [Populus trichocarpa] gi|222874511|gb|EEF11642.1| predicted protein [Populus trichocarpa]

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 160/185 (86%), Positives = 168/185 (90%), Gaps = 9/185 (4%)

Query: 1   MSSNKGKEVAEGSSSRSSTIATAAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQRP 60
           MSSNKGK+VAEGSS         AVA A DQQ+P PLSRYESQKRRDWNTFGQYLRNQRP
Sbjct: 1   MSSNKGKDVAEGSSR--------AVAMAPDQQNPPPLSRYESQKRRDWNTFGQYLRNQRP 52

Query: 61  PVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIG 120
           PVALSQCN+NHVL+FLRYLDQFGKTKVHLQGCVFFGQPEPPGPC+CPLKQAWGSLDALIG
Sbjct: 53  PVALSQCNANHVLEFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCTCPLKQAWGSLDALIG 112

Query: 121 RLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRMTVKATNDHSS 180
           RLRAAYEENGGLPETNPFASGAIR+YLREVRDSQAKARGIPYKKKKKKR  +KA ND SS
Sbjct: 113 RLRAAYEENGGLPETNPFASGAIRVYLREVRDSQAKARGIPYKKKKKKRNPMKA-NDESS 171

Query: 181 NFPMQ 185
           +F MQ
Sbjct: 172 SFHMQ 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117036|ref|XP_002317458.1| predicted protein [Populus trichocarpa] gi|222860523|gb|EEE98070.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (789), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 158/185 (85%), Positives = 164/185 (88%), Gaps = 9/185 (4%)

Query: 1   MSSNKGKEVAEGSSSRSSTIATAAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQRP 60
           MSSNKGK++AEGSS           A A DQQSP PLSRYESQKRRDWNTFGQYLRNQRP
Sbjct: 1   MSSNKGKDIAEGSSR--------GGANAPDQQSPPPLSRYESQKRRDWNTFGQYLRNQRP 52

Query: 61  PVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIG 120
           PVALSQCN+N VLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPC+CPLKQAWGSLDALIG
Sbjct: 53  PVALSQCNANQVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCTCPLKQAWGSLDALIG 112

Query: 121 RLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRMTVKATNDHSS 180
           RLRAAYEENGGLPETNPFASGAIR+YLREVRDSQAKARGIPYKKKKKKR   KA ND SS
Sbjct: 113 RLRAAYEENGGLPETNPFASGAIRVYLREVRDSQAKARGIPYKKKKKKRNPTKA-NDESS 171

Query: 181 NFPMQ 185
           +F MQ
Sbjct: 172 SFHMQ 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461669|ref|XP_002285447.1| PREDICTED: uncharacterized protein LOC100257253 [Vitis vinifera]

 Score =  305 bits (780), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 153/185 (82%), Positives = 163/185 (88%), Gaps = 9/185 (4%)

Query: 1   MSSNKGKEVAEGSSSRSSTIATAAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQRP 60
           MSSNKGK+  EGSS+RSS        A   QQ P PLSRYESQKRRDWNTFGQ+L+NQRP
Sbjct: 43  MSSNKGKDTGEGSSTRSS--------AEDQQQQPPPLSRYESQKRRDWNTFGQFLKNQRP 94

Query: 61  PVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIG 120
           PVAL+QCNSN VLDFLRYLDQFGKTKVHLQGCV+FGQPEPPGPC+CPLKQAWGSLDALIG
Sbjct: 95  PVALAQCNSNQVLDFLRYLDQFGKTKVHLQGCVYFGQPEPPGPCTCPLKQAWGSLDALIG 154

Query: 121 RLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRMTVKATNDHSS 180
           RLRAAYEENGGLPE NPFASGAIRIYLREVRDSQAKARG+PYKKKKKKR  +KA +D  S
Sbjct: 155 RLRAAYEENGGLPEKNPFASGAIRIYLREVRDSQAKARGVPYKKKKKKRNQMKANSDE-S 213

Query: 181 NFPMQ 185
           NFPMQ
Sbjct: 214 NFPMQ 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776506|emb|CAN63025.1| hypothetical protein VITISV_034817 [Vitis vinifera]

 Score =  299 bits (766), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 150/182 (82%), Positives = 160/182 (87%), Gaps = 9/182 (4%)

Query: 4   NKGKEVAEGSSSRSSTIATAAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQRPPVA 63
           NKGK+  EGSS+RSS        A   QQ P PLSRYESQKRRDWNTFGQ+L+NQRPPVA
Sbjct: 3   NKGKDTGEGSSTRSS--------AEDQQQQPPPLSRYESQKRRDWNTFGQFLKNQRPPVA 54

Query: 64  LSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLR 123
           L+QCNSN VLDFLRYLDQFGKTKVHLQGCV+FGQPEPPGPC+CPLKQAWGSLDALIGRLR
Sbjct: 55  LAQCNSNQVLDFLRYLDQFGKTKVHLQGCVYFGQPEPPGPCTCPLKQAWGSLDALIGRLR 114

Query: 124 AAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRMTVKATNDHSSNFP 183
           AAYEENGGLPE NPFASGAIRIYLREVRDSQAKARG+PYKKKKKKR  +KA +D  SNFP
Sbjct: 115 AAYEENGGLPEKNPFASGAIRIYLREVRDSQAKARGVPYKKKKKKRNQMKANSDE-SNFP 173

Query: 184 MQ 185
           MQ
Sbjct: 174 MQ 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579066|ref|XP_002530382.1| conserved hypothetical protein [Ricinus communis] gi|223530083|gb|EEF32002.1| conserved hypothetical protein [Ricinus communis]

 Score =  293 bits (751), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/197 (78%), Positives = 163/197 (82%), Gaps = 12/197 (6%)

Query: 1   MSSNKGKEVAEGSSSRSSTI-----------ATAAVAAASDQQSPAPLSRYESQKRRDWN 49
           MS NKGK +AEGSS                 A         QQ+P PLSRYESQKRRDWN
Sbjct: 1   MSGNKGKHIAEGSSRSGGGGGGCGDGDGGNNAIGLHQQQQQQQNPPPLSRYESQKRRDWN 60

Query: 50  TFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLK 109
           TFGQYLRNQRPPVALSQCN+NHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPC+CPLK
Sbjct: 61  TFGQYLRNQRPPVALSQCNANHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCTCPLK 120

Query: 110 QAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKR 169
           QAWGSLDALIGRLRAAYEENGGLPETNPFASGAIR++LREVRDSQAKARGIPYKKKKKKR
Sbjct: 121 QAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRVHLREVRDSQAKARGIPYKKKKKKR 180

Query: 170 MTVKATNDH-SSNFPMQ 185
             +KA  DH SS+FPMQ
Sbjct: 181 NPMKAITDHESSSFPMQ 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519073|gb|AFK47598.1| unknown [Lotus japonicus]

 Score =  291 bits (745), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 141/185 (76%), Positives = 153/185 (82%), Gaps = 9/185 (4%)

Query: 3   SNKGKEVAEGSSSRSSTIATAAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQRPPV 62
           SNKGK++AEGSS  S                  PLSRYESQKRRDWNTFGQYLRNQRPPV
Sbjct: 2   SNKGKDIAEGSSPASDHHHHQQQQQQ-------PLSRYESQKRRDWNTFGQYLRNQRPPV 54

Query: 63  ALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRL 122
           ALSQCNSN VL+FLRYLDQFGKTKVH+QGC+FFGQ EPPGPC+CPL+QAWGSLDALIGRL
Sbjct: 55  ALSQCNSNQVLEFLRYLDQFGKTKVHVQGCLFFGQAEPPGPCTCPLRQAWGSLDALIGRL 114

Query: 123 RAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRMTVKATND--HSS 180
           RAAYEENGGLPE NPFASG IR+YLREVRDSQAKARGIPYK+KKKKR  +KA  +   SS
Sbjct: 115 RAAYEENGGLPEANPFASGTIRLYLREVRDSQAKARGIPYKEKKKKRNVMKAMTEGVSSS 174

Query: 181 NFPMQ 185
           + PMQ
Sbjct: 175 SLPMQ 179

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452175|ref|XP_003596364.1| 177 protein [Medicago truncatula] gi|355485412|gb|AES66615.1| 177 protein [Medicago truncatula]

 Score =  288 bits (736), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 149/183 (81%), Positives = 158/183 (86%), Gaps = 6/183 (3%)

Query: 3   SNKGKEVAEGSSSRSSTIATAAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQRPPV 62
           SNKGK++ EGSS RSS            QQ   PLSRYESQKRRDWNTFGQYLRNQRPPV
Sbjct: 2   SNKGKDIVEGSS-RSSI----GDDQNQQQQQQIPLSRYESQKRRDWNTFGQYLRNQRPPV 56

Query: 63  ALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRL 122
           ALS CNSNHVL+FLRYLDQFGKTKVHLQGC+FFGQ EPPGPC+CPLKQAWGSLDALIGRL
Sbjct: 57  ALSNCNSNHVLEFLRYLDQFGKTKVHLQGCLFFGQTEPPGPCTCPLKQAWGSLDALIGRL 116

Query: 123 RAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRMTVKATNDHSSNF 182
           RAAYEENGGLPETNPFASG+IRIYLREVRDSQAKARGIPYKKKKKKR+ +K   D +SN 
Sbjct: 117 RAAYEENGGLPETNPFASGSIRIYLREVRDSQAKARGIPYKKKKKKRVAIKHNGD-TSNL 175

Query: 183 PMQ 185
           PMQ
Sbjct: 176 PMQ 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544090|ref|XP_003540488.1| PREDICTED: uncharacterized protein LOC100806493 [Glycine max]

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 146/184 (79%), Positives = 158/184 (85%), Gaps = 2/184 (1%)

Query: 3   SNKGKEVAEGSSSRSSTIATAAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQRPPV 62
           S+KGKEVAEGSS+   +          +QQ   PLSRYESQKRRDWNTFGQYLRNQRPPV
Sbjct: 2   SSKGKEVAEGSSTTRPSHG-GDDDHHHNQQQQLPLSRYESQKRRDWNTFGQYLRNQRPPV 60

Query: 63  ALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRL 122
           ALSQC+SNHVL+FLRYLDQFGKTKVH QGC+FFGQ EPPGPC+CPL+QAWGSLDALIGRL
Sbjct: 61  ALSQCSSNHVLEFLRYLDQFGKTKVHSQGCLFFGQTEPPGPCTCPLRQAWGSLDALIGRL 120

Query: 123 RAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRMTVKATND-HSSN 181
           RAAYEENGGLPETNPFASGAIR+YLREVRDSQ+KARGIPYKKKKKKR  +K   D  SSN
Sbjct: 121 RAAYEENGGLPETNPFASGAIRVYLREVRDSQSKARGIPYKKKKKKRNVIKPNGDTSSSN 180

Query: 182 FPMQ 185
            PMQ
Sbjct: 181 LPMQ 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722645|ref|NP_001237763.1| uncharacterized protein LOC100527554 [Glycine max] gi|255632602|gb|ACU16651.1| unknown [Glycine max]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/195 (74%), Positives = 158/195 (81%), Gaps = 14/195 (7%)

Query: 3   SNKGKEVAEGSSSRSSTIATAAVAAASDQQSPA-----------PLSRYESQKRRDWNTF 51
           S+KGKE+AEGSS+  +T AT       D                PLSRYESQKRRDWNTF
Sbjct: 2   SSKGKEIAEGSST--TTTATRPSHGGDDHHHHHNQQQQQQQQQLPLSRYESQKRRDWNTF 59

Query: 52  GQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQA 111
           GQYLRNQRPPVALSQC+SNHVL+FLRYLDQFGKTKVH QGC+FFGQ EPPGPC+CPL+QA
Sbjct: 60  GQYLRNQRPPVALSQCSSNHVLEFLRYLDQFGKTKVHSQGCLFFGQTEPPGPCTCPLRQA 119

Query: 112 WGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRMT 171
           WGSLDALIGRLRAAYEENGGLPETNPFASG IR+YLREVRDSQAKARGIPYKKKKKKR  
Sbjct: 120 WGSLDALIGRLRAAYEENGGLPETNPFASGTIRVYLREVRDSQAKARGIPYKKKKKKRNV 179

Query: 172 VKATND-HSSNFPMQ 185
           ++   D  SSN PMQ
Sbjct: 180 IRPNGDTSSSNLPMQ 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493306|gb|AFK34719.1| unknown [Lotus japonicus]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 142/185 (76%), Positives = 153/185 (82%), Gaps = 9/185 (4%)

Query: 3   SNKGKEVAEGSSSRSSTIATAAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQRPPV 62
           SNKGK++AEGSS  S                  PLSRYESQKRRDWNTFGQYLRNQRPPV
Sbjct: 2   SNKGKDIAEGSSPASDHHHHQQQQQQ-------PLSRYESQKRRDWNTFGQYLRNQRPPV 54

Query: 63  ALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRL 122
           ALSQCNSN VL+FLRYLDQFGKTKVH+QGC+FFGQ EPPGPC+CPL+QAWGSLDALIGRL
Sbjct: 55  ALSQCNSNQVLEFLRYLDQFGKTKVHVQGCLFFGQAEPPGPCTCPLRQAWGSLDALIGRL 114

Query: 123 RAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRMTVKATND--HSS 180
           RAAYEENGGLPE NPFASG IR+YLREVRDSQAKARGIPYKKKKKKR  +KA  +   SS
Sbjct: 115 RAAYEENGGLPEANPFASGTIRLYLREVRDSQAKARGIPYKKKKKKRNVMKAMTEGVSSS 174

Query: 181 NFPMQ 185
           + PMQ
Sbjct: 175 SLPMQ 179

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2041514	177	LSH10 "AT2G42610" [Arabidopsis	0.670	0.700	0.862	2.7e-59
TAIR|locus:505006228	195	LSH7 "AT1G78815" [Arabidopsis	0.670	0.635	0.838	5.9e-57
TAIR|locus:2082170	195	LSH4 "LIGHT SENSITIVE HYPOCOTY	0.670	0.635	0.790	1.5e-53
TAIR|locus:2124067	191	LSH9 "AT4G18610" [Arabidopsis	0.670	0.649	0.8	1.9e-53
TAIR|locus:2007382	196	LSH6 "AT1G07090" [Arabidopsis	0.670	0.632	0.774	6.3e-53
TAIR|locus:2055897	219	LSH3 "AT2G31160" [Arabidopsis	0.767	0.648	0.683	2.7e-52
TAIR|locus:2147494	190	LSH1 "AT5G28490" [Arabidopsis	0.670	0.652	0.766	1.9e-51
TAIR|locus:2100850	201	LSH2 "AT3G04510" [Arabidopsis	0.670	0.616	0.758	2.4e-51
TAIR|locus:2171263	182	LSH5 "AT5G58500" [Arabidopsis	0.670	0.681	0.768	5.1e-51
TAIR|locus:2015591	164	LSH8 "AT1G16910" [Arabidopsis	0.670	0.756	0.782	6.5e-51

TAIR|locus:2041514 LSH10 "AT2G42610" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 107/124 (86%), Positives = 117/124 (94%)

Query:    39 RYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQP 98
             RYESQKRRDWNTFGQYL+NQRPPV +S C+ NHVLDFLRYLDQFGKTKVH+ GC+F+GQP
Sbjct:    25 RYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQP 84

Query:    99 EPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKAR 158
             EPP PC+CPL+QAWGSLDALIGRLRAAYEENGG PETNPFASGAIR+YLREVR+ QAKAR
Sbjct:    85 EPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKAR 144

Query:   159 GIPY 162
             GIPY
Sbjct:   145 GIPY 148

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006228 LSH7 "AT1G78815" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 104/124 (83%), Positives = 114/124 (91%)

Query:    39 RYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQP 98
             RYESQKRRDWNTF QYLRNQ+PPV +SQC SNH+LDFL+YLDQFGKTKVH+ GCVFFGQ 
Sbjct:    40 RYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQV 99

Query:    99 EPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKAR 158
             EP G C+CPLKQAWGSLDALIGRLRAA+EENGGLPE NPFA G IR++LREVRDSQAKAR
Sbjct:   100 EPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKAR 159

Query:   159 GIPY 162
             G+PY
Sbjct:   160 GVPY 163

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

TAIR|locus:2082170 LSH4 "LIGHT SENSITIVE HYPOCOTYLS 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 98/124 (79%), Positives = 110/124 (88%)

Query:    39 RYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQP 98
             RYE+QKRRDWNTFGQYLRN RPP++LS+C+  HVL+FLRYLDQFGKTKVH   C FFG P
Sbjct:    48 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHP 107

Query:    99 EPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKAR 158
              PP PC+CPL+QAWGSLDALIGRLRAA+EENGG PETNPF + A+R+YLREVRDSQAKAR
Sbjct:   108 NPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKAR 167

Query:   159 GIPY 162
             GI Y
Sbjct:   168 GISY 171

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2124067 LSH9 "AT4G18610" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 100/125 (80%), Positives = 114/125 (91%)

Query:    39 RYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQP 98
             RYESQKRRDWNTF QYL++Q PP+ +SQ +  HVL FLRYLDQFGKTKVH Q CVFFGQP
Sbjct:    37 RYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFGQP 96

Query:    99 EPPGPCSCPLKQAWGSLDALIGRLRAAYEENGG-LPETNPFASGAIRIYLREVRDSQAKA 157
             +PPGPC+CPLKQAWGSLDALIGRLRAAYEE+GG  P+TNPFA+G+IR++LREVR+SQAKA
Sbjct:    97 DPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQAKA 156

Query:   158 RGIPY 162
             RGIPY
Sbjct:   157 RGIPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2007382 LSH6 "AT1G07090" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 96/124 (77%), Positives = 112/124 (90%)

Query:    39 RYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQP 98
             RYESQKRRDWNTF QYL+N +PP+ALS+C+  HV++FL+YLDQFGKTKVH+  C +FG  
Sbjct:    31 RYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQ 90

Query:    99 EPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKAR 158
             +PP PCSCPLKQAWGSLDALIGRLRAAYEENGG P++NPFA+ A+RIYLREVR+SQAKAR
Sbjct:    91 QPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKAR 150

Query:   159 GIPY 162
             GIPY
Sbjct:   151 GIPY 154

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055897 LSH3 "AT2G31160" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 97/142 (68%), Positives = 113/142 (79%)

Query:    39 RYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQP 98
             RYE+QKRRDWNTFGQYLRN RPP++LS+C+  HVL+FLRYLDQFGKTKVH   C F+G P
Sbjct:    54 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHP 113

Query:    99 EPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKAR 158
              PP PC CPL+QAWGSLDALIGRLRAA+EENGG PETNPF + A+R+YLREVRD Q+KAR
Sbjct:   114 NPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKAR 173

Query:   159 GIPYXXXXXXRMTVKATNDHSS 180
             G+ Y      R    ++   SS
Sbjct:   174 GVSYEKKKRKRPLPSSSTSSSS 195

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2147494 LSH1 "AT5G28490" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 95/124 (76%), Positives = 105/124 (84%)

Query:    39 RYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQP 98
             RYE+QKRRDWNTF QYLRN RPP++L  C+  HVL+FLRYLDQFGKTKVH Q C FFG P
Sbjct:    25 RYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLP 84

Query:    99 EPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKAR 158
              PP PC CPL+QAWGSLDALIGRLRAAYEENGG PE NPF S A+R++LREVRD QAKAR
Sbjct:    85 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKAR 144

Query:   159 GIPY 162
             G+ Y
Sbjct:   145 GVSY 148

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009637 "response to blue light" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010114 "response to red light" evidence=IGI

GO:0010218 "response to far red light" evidence=IGI

TAIR|locus:2100850 LSH2 "AT3G04510" [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 94/124 (75%), Positives = 106/124 (85%)

Query:    39 RYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQP 98
             RYE+QKRRDWNTF QYLRN  PP++L+ C+  HVLDFLRYLDQFGKTKVH Q C FFG P
Sbjct:    33 RYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLP 92

Query:    99 EPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKAR 158
              PP PC CPL+QAWGSLDALIGRLRAAYEENGG PET+PF S ++RI+LREVRD QAK+R
Sbjct:    93 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSR 152

Query:   159 GIPY 162
             G+ Y
Sbjct:   153 GVSY 156

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171263 LSH5 "AT5G58500" [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 96/125 (76%), Positives = 109/125 (87%)

Query:    39 RYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQP 98
             RYESQKRRDWNTF QYLRN +PP+ LS+C+  HVL+FL+YLDQFGKTKVH   C FFGQP
Sbjct:    19 RYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQP 78

Query:    99 EPPGPCSCPLKQAWGSLDALIGRLRAAYEE-NGGLPETNPFASGAIRIYLREVRDSQAKA 157
              PP  C+CPLKQAWGSLDALIGRLRAA+EE  GGLPE+NPFA+ A+RIYL+EVR +QAKA
Sbjct:    79 NPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQTQAKA 138

Query:   158 RGIPY 162
             RGIPY
Sbjct:   139 RGIPY 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015591 LSH8 "AT1G16910" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 97/124 (78%), Positives = 106/124 (85%)

Query:    39 RYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQP 98
             RYESQK RDWNTF QYL  + PPV + +C SNH+LDFL+  DQFGKTKVH+QGCVFFGQ 
Sbjct:    23 RYESQKSRDWNTFCQYLMTKMPPVHVWECESNHILDFLQSRDQFGKTKVHIQGCVFFGQK 82

Query:    99 EPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKAR 158
             EPPG C+CPLKQAWGSLDALIGRLRAAYEENGGL E NPFA G IRI+LREVR SQAKAR
Sbjct:    83 EPPGECNCPLKQAWGSLDALIGRLRAAYEENGGLTEKNPFARGGIRIFLREVRGSQAKAR 142

Query:   159 GIPY 162
             G+ Y
Sbjct:   143 GVLY 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      185       150   0.00087  104 3  11 22  0.48    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  153 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.16u 0.08s 15.24t   Elapsed:  00:00:02
  Total cpu time:  15.16u 0.08s 15.24t   Elapsed:  00:00:02
  Start:  Fri May 10 00:24:15 2013   End:  Fri May 10 00:24:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
pfam04852	133	pfam04852, DUF640, Protein of unknown function (DU	6e-78

>gnl|CDD|191112 pfam04852, DUF640, Protein of unknown function (DUF640)

 Score =  228 bits (582), Expect = 6e-78
 Identities = 97/125 (77%), Positives = 107/125 (85%)

Query: 29  SDQQSPAPLSRYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVH 88
           S +  P  LSRYESQKRRDWNTF QYLRNQRPP+ LS+C+ NHVLDFLRYLDQFGKTKVH
Sbjct: 9   SSRSPPPALSRYESQKRRDWNTFCQYLRNQRPPLNLSKCSGNHVLDFLRYLDQFGKTKVH 68

Query: 89  LQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLR 148
            Q C FFG P PP PC CPL+QAWGSLDALIGRLRAA+EE+GG PE NPFA+ A+R+YLR
Sbjct: 69  GQACGFFGHPSPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGHPEENPFAARAVRLYLR 128

Query: 149 EVRDS 153
           EVRDS
Sbjct: 129 EVRDS 133

This family represents a conserved region found in plant proteins including Resistance protein-like protein. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
PF04852	132	DUF640: Protein of unknown function (DUF640); Inte	100.0
PF08821	107	CGGC: CGGC domain; InterPro: IPR014925 Proteins in	92.0
PF02899	84	Phage_int_SAM_1: Phage integrase, N-terminal SAM-l	87.41
cd00798	284	INT_XerDC XerD and XerC integrases, DNA breaking-r	84.19
cd00799	287	INT_Cre Cre recombinase, C-terminal catalytic doma	82.18

>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT)

Probab=100.00  E-value=1.7e-76  Score=470.03  Aligned_cols=122  Identities=77%  Similarity=1.392  Sum_probs=119.2

Q ss_pred             CCCCCCchhhhhhhhhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhh
Q 029917           32 QSPAPLSRYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQA  111 (185)
Q Consensus        32 ~~~~~~srYesQKrrdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQA  111 (185)
                      ++++++||||+|||||||||+|||+||+||++|++|+++|||+||+|+|||||||||.++|+|||+|+||+||+||||||
T Consensus        11 ~~~~~~SrYesQKrrdwntf~qyL~n~rPP~~L~~csg~hVl~FL~~~d~~GkTkVh~~~C~~~g~~~~p~~C~CPlrqA   90 (132)
T PF04852_consen   11 SPQPAPSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGNHVLEFLRYLDQFGKTKVHGQGCPFFGHPSPPAPCPCPLRQA   90 (132)
T ss_pred             CCCCCCcccchhhhHHHHHHHHHHHccCCCcchhhcChHHHHHHHHHHhccCCeeecCCCCCCCCCCCCCCCCCCcHHHH
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHhCCCCCCCCccchhHHHHHHHHhHH
Q 029917          112 WGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDS  153 (185)
Q Consensus       112 wGSLDALIGRLRAafeE~Gg~pE~NPF~araVR~YLReVRd~  153 (185)
                      ||||||||||||||||||||.||+|||+++|||+|||||||+
T Consensus        91 wGSlDalIGrLraafee~Gg~pe~NPf~~~~vr~yLr~vr~~  132 (132)
T PF04852_consen   91 WGSLDALIGRLRAAFEEHGGHPEANPFAARAVRLYLREVRDS  132 (132)
T ss_pred             hccHHHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999985

>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region

Probab=92.00  E-value=0.28  Score=37.78  Aligned_cols=67  Identities=21%  Similarity=0.522  Sum_probs=50.4

Q ss_pred             HHHHHHHhcCCCcccCCCC---ccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 029917           50 TFGQYLRNQRPPVALSQCN---SNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAY  126 (185)
Q Consensus        50 tf~qyL~n~rPPlsl~~cs---~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAaf  126 (185)
                      .|.+|=.+..--+.+.+|.   +..|+..+..+-..|-..||..+|...+.+.+    +||.      +|.|+-.|+++|
T Consensus        29 ~F~~y~~~~~elvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~----~CP~------~~~~~~~I~~~~   98 (107)
T PF08821_consen   29 AFARYDDEDVELVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG----PCPH------IDEIKKIIEEKF   98 (107)
T ss_pred             ccccCCCCCeEEEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC----CCCC------HHHHHHHHHHHh
Confidence            3444443233345566664   58888888998899999999999999887654    5665      899999999888

The region has many conserved cysteines and histidines suggestive of a zinc binding function.

>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]

Probab=87.41  E-value=0.61  Score=31.18  Aligned_cols=40  Identities=30%  Similarity=0.488  Sum_probs=31.1

Q ss_pred             hhhhhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCC
Q 029917           43 QKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFG   83 (185)
Q Consensus        43 QKrrdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfG   83 (185)
                      .-+++++.|.+||.+ ....++..++..||.+||.++-+.|
T Consensus        21 ~Y~~~l~~f~~~~~~-~~~~~~~~i~~~~v~~f~~~~~~~~   60 (84)
T PF02899_consen   21 SYRRDLRRFIRWLEE-HGIIDWEDITEEDVRDFLEYLAKEG   60 (84)
T ss_dssp             HHHHHHHHHHHHHHH-TTS-CGGG--HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhhh-hhhhhhhhhhhHHHHHHHHHHHccC
Confidence            346789999999999 6677778899999999999987665

The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.

>cd00798 INT_XerDC XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains

Probab=84.19  E-value=2.5  Score=32.36  Aligned_cols=68  Identities=24%  Similarity=0.314  Sum_probs=47.4

Q ss_pred             hhhhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 029917           44 KRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLR  123 (185)
Q Consensus        44 Krrdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLR  123 (185)
                      -+..|+.|.+|+.....+. +..-+..||.+|+.++...|                          ....++...++-|+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~l~   74 (284)
T cd00798          22 YRRDLERFLEFLEERGILF-PADVTPDDIRRFLAELKDQG--------------------------LSARSIARKLSALR   74 (284)
T ss_pred             HHHHHHHHHHHHHHcCCCc-hhhCCHHHHHHHHHHhhhcC--------------------------CCHHHHHHHHHHHH
Confidence            3557899999998754332 56667899999999876543                          23457788888888


Q ss_pred             HHHHHh--CCCCCCCCc
Q 029917          124 AAYEEN--GGLPETNPF  138 (185)
Q Consensus       124 AafeE~--Gg~pE~NPF  138 (185)
                      ++|.-.  -+..+.||+
T Consensus        75 ~~~~~~~~~~~~~~~p~   91 (284)
T cd00798          75 SFFKFLLREGLILANPA   91 (284)
T ss_pred             HHHHHHHHcCCccCChh
Confidence            888732  133456887

XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination of chromosomal replication, and stable plasmid inheritance. They share the same fold in their catalytic domain containing six conserved active site residues and the overall reaction mechanism with the DNA breaking-rejoining enzyme superfamily. In Escherichia coli, the Xer site-specific recombination system acts to convert dimeric chromosomes, which are formed by homologous recombination to monomers. Two related recombinases, XerC and XerD, bind cooperatively to a recombination site present in the E. coli chromosome. Each recombinase catalyzes the exchange of one pair of DNA strand in a reaction that proceeds through a Holliday junction intermediate. These enzymes can bridge two different and well-separated DNA sequen

>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain

Probab=82.18  E-value=9.2  Score=30.62  Aligned_cols=76  Identities=20%  Similarity=0.294  Sum_probs=52.3

Q ss_pred             hhhhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 029917           44 KRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLR  123 (185)
Q Consensus        44 Krrdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLR  123 (185)
                      -..+++.|..|+...-  +....-+..+|.+||.||.+                           ..+..++-..++.|+
T Consensus         7 y~~~l~~f~~~~~~~~--~~~~~~~~~~i~~~~~~l~~---------------------------~~s~~ti~~~~~~l~   57 (287)
T cd00799           7 YLSDWRRFAAWCQAHG--RTPLPASPETVTLYLTDLAD---------------------------SLAPSTISRRLSALS   57 (287)
T ss_pred             HHHHHHHHHHHHHhcC--CCCCCCCHHHHHHHHHHHHh---------------------------ccChHHHHHHHHHHH
Confidence            3567889999998752  12222357899999998752                           124578889999999


Q ss_pred             HHHHHhCCCCCCCCccchhHHHHHHHHh
Q 029917          124 AAYEENGGLPETNPFASGAIRIYLREVR  151 (185)
Q Consensus       124 AafeE~Gg~pE~NPF~araVR~YLReVR  151 (185)
                      .+|+..+.   .||+....+..-|+.++
T Consensus        58 ~~~~~~~~---~~p~~~~~~~~~~~~~~   82 (287)
T cd00799          58 QLHRRSGL---PSPADSPLVRLVLRGIR   82 (287)
T ss_pred             HHHHHcCC---CCCccCHHHHHHHHHHH
Confidence            99985432   58877655666665554

Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 31/158 (19%)

Query: 27  AASDQQSPAPLSRYESQKRRDWNT---FGQYLRNQRPPV-----ALSQCNSNHVLDFLRY 78
               +Q       Y  Q+ R +N    F +Y  ++  P      AL +      +  +  
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDG 157

Query: 79  LDQFGKTKVHLQGCVFFG-QPEPP--------GPCSCP---LKQAWGSLDALIGRLRAAY 126
           +   GKT V L  C+ +  Q +            C+ P   L+     L  L+ ++   +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPNW 213

Query: 127 EENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKK 164
                          +I+  LR +  S+      PY+ 
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSK------PYEN 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
1xo0_A	324	Recombinase CRE; CRE recombinase, holliday junctio	89.67
3nrw_A	117	Phage integrase/site-specific recombinase; alpha-h	80.64

>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...

Probab=89.67  E-value=0.33  Score=36.84  Aligned_cols=70  Identities=17%  Similarity=0.221  Sum_probs=51.5

Q ss_pred             hhhhhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHH
Q 029917           43 QKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRL  122 (185)
Q Consensus        43 QKrrdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRL  122 (185)
                      .-+++|+.|..|+....  +.+...+..||.+|+.++-..|                          .+..++...+.-|
T Consensus        25 ~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l   76 (324)
T 1xo0_A           25 MLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQL   76 (324)
T ss_dssp             HHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHHH
Confidence            34568899999998763  2455668899999999874322                          3557899999999


Q ss_pred             HHHHHHhCCC-CCCCCccc
Q 029917          123 RAAYEENGGL-PETNPFAS  140 (185)
Q Consensus       123 RAafeE~Gg~-pE~NPF~a  140 (185)
                      ++.|+-.+.. +..||+..
T Consensus        77 ~~~~~~~~~~~~~~np~~~   95 (324)
T 1xo0_A           77 NMLHRRSGLPRPSDSNAVS   95 (324)
T ss_dssp             HHHHHHHTSCCGGGSHHHH
T ss_pred             HHHHHHcCCCCCCcCHHHH
Confidence            9999987643 34688743

>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}

Probab=80.64  E-value=3.5  Score=28.11  Aligned_cols=70  Identities=9%  Similarity=0.046  Sum_probs=49.2

Q ss_pred             hhhhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 029917           44 KRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLR  123 (185)
Q Consensus        44 Krrdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLR  123 (185)
                      -+++++.|..||.... -..+...+..||.+|+.|+-..                          ..+..|+-..+.-||
T Consensus        32 Y~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~--------------------------~~s~~Ti~~~ls~lr   84 (117)
T 3nrw_A           32 FRYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGS--------------------------DVSPATLNGEMQTLK   84 (117)
T ss_dssp             HHHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTS--------------------------SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHH
Confidence            3578889999997632 1256677889999999987421                          135568888888899


Q ss_pred             HHHHHh--CCCCCCCCccc
Q 029917          124 AAYEEN--GGLPETNPFAS  140 (185)
Q Consensus       124 AafeE~--Gg~pE~NPF~a  140 (185)
                      +.|.-.  -|.-+.||+..
T Consensus        85 ~f~~~l~~~g~i~~nP~~~  103 (117)
T 3nrw_A           85 NWLEYLARIDVVDEDLPEK  103 (117)
T ss_dssp             HHHHHHHHTTSSCTTSGGG
T ss_pred             HHHHHHHHcCCcccCHHHH
Confidence            888743  24456899753

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1f44a1	110	Cre recombinase {Bacteriophage P1 [TaxId: 10678]}	97.61

>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Cre recombinase
species: Bacteriophage P1 [TaxId: 10678]

Probab=97.61  E-value=9.9e-05  Score=51.67  Aligned_cols=81  Identities=19%  Similarity=0.308  Sum_probs=66.4

Q ss_pred             hhhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 029917           45 RRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRA  124 (185)
Q Consensus        45 rrdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRA  124 (185)
                      ++||+.|.+|+.++.-  ++..++..+|.+||.++-.-|                          .+..|+.--|--||.
T Consensus        27 ~~dl~~f~~w~~~~~~--~~l~~~~~~v~~yl~~l~~~g--------------------------~s~sTi~R~lsair~   78 (110)
T d1f44a1          27 LSVCRSWAAWCKLNNR--KWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQLNM   78 (110)
T ss_dssp             HHHHHHHHHHHHHTTC--CTTTTCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc--cccchhhhHHHHHHHHHHhcC--------------------------CCccHHHHHHHHHHH
Confidence            5799999999998863  455689999999999874422                          456789999999999


Q ss_pred             HHHHhCCCCCCCCccchhHHHHHHHHhHHHhh
Q 029917          125 AYEENGGLPETNPFASGAIRIYLREVRDSQAK  156 (185)
Q Consensus       125 afeE~Gg~pE~NPF~araVR~YLReVRd~QAk  156 (185)
                      .|...|-.   ||+.+..|++.|+-++-..+.
T Consensus        79 f~r~~g~~---~p~~~~~V~~~l~~i~R~~~~  107 (110)
T d1f44a1          79 LHRRSGLP---RPSDSNAVSLVMRRIRKENVD  107 (110)
T ss_dssp             HHHHTTCC---CGGGSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCC---CCcCCHHHHHHHHHccccccC
Confidence            99888753   799999999999998876655