Citrus Sinensis ID: 029921

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFHFC
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccHHccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHccHcccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHccccHHcccccccHHHHHHHHHHHHHHHHHHcccccEcccHHHHHccEEEEEcccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mqgipdgagiRSTVWKLLLVylppdrglwpseLAKKRSQykhfkddllvnpseitrrldkstiyeseewkcessgflsrseithdehplslgkssiwnqffqdseIMEQIDRDvkrthpdmhffsgdssfatSNQEALKNILIVFAklnpgiryvQGMNEILAPLyyvfksdpdeefsvstfhfc
Flexible Loop (DISEMBL)
mqgipdgagiRSTVWKLLLVYLPPDRGLWPSELAKKRsqykhfkddllvnpseitrrldkstiyeseewkcesSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFHFC
Low Complexity Region (SEG)
MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFHFC
Disordered region (IsUnstruct)
********GIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKC********************GKSSIWNQFFQDSEIMEQI************FF**********QEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKS**************
Disordered Region (DISOPRED)
MQGIPD*AGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLD***************************************QFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFHFC
Disordered Region (DISEMBL)
MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFHFC
Disordered Region (DISPRO)
**GIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEIT******************************EHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVST*HFC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFHFC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q92609	795	TBC1 domain family member	yes	no	0.724	0.168	0.320	4e-19
Q9NVG8	400	TBC1 domain family member	no	no	0.6	0.277	0.343	2e-18
Q9URY3	619	TBC domain-containing pro	yes	no	0.583	0.174	0.382	3e-18
Q54VM3	1173	TBC1 domain family member	no	no	0.859	0.135	0.305	5e-18
Q80XQ2	815	TBC1 domain family member	yes	no	0.724	0.164	0.314	5e-18
Q8R3D1	400	TBC1 domain family member	no	no	0.6	0.277	0.335	1e-17
Q54TA5	1016	TBC1 domain family member	no	no	0.702	0.127	0.298	4e-12
Q8TBP0	767	TBC1 domain family member	no	no	0.286	0.069	0.375	4e-05
Q09830	772	TBC domain-containing pro	no	no	0.367	0.088	0.361	0.0003
P09379	730	GTPase-activating protein	no	no	0.448	0.113	0.295	0.0004

>sp|Q92609|TBCD5_HUMAN TBC1 domain family member 5 OS=Homo sapiens GN=TBC1D5 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 28/162 (17%)

Query: 11  RSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWK 70
           RS  WKL L  LP D+  W S + + R+ Y + K+  + NP ++  + D           
Sbjct: 87  RSICWKLFLCVLPQDKSQWISRIEELRAWYSNIKEIHITNPRKVVGQQDLMI-------- 138

Query: 71  CESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSF 130
                           +PLS  + S+WN+FFQD E+   I++DVKRT P+M FF  ++  
Sbjct: 139 ---------------NNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQENV- 182

Query: 131 ATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSD 172
               ++ L ++L  +A+ N  + Y QGM+E+LAP+ +V   D
Sbjct: 183 ----RKILTDVLFCYARENEQLLYKQGMHELLAPIVFVLHCD 220

May act as a GTPase-activating protein for Rab family protein(s).
Homo sapiens (taxid: 9606)

>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 17/128 (13%)

Query: 3   GIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKST 62
           GIP   G+R   WK+LL YLP +R  W S LAK+R  Y  F  ++++ P           
Sbjct: 33  GIPCEGGLRCLCWKILLNYLPLERASWTSILAKQRELYAQFLREMIIQPG---------- 82

Query: 63  IYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMH 122
                    +++  +SR ++T ++HPL+    S WN +F+D+E++ QID+DV+R  PD+ 
Sbjct: 83  -------IAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDIS 135

Query: 123 FFSGDSSF 130
           FF   + +
Sbjct: 136 FFQRATDY 143

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|Q9URY3|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4 SV=4

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 20/128 (15%)

Query: 1   MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDK 60
           +QGIPD   +R+  W L+L +LP DR  W S L K R  Y  F  +LL++P        K
Sbjct: 30  IQGIPDEYSLRAKAWMLMLEFLPTDRSNWQSVLEKHRKTYTSFVQELLIDPWR------K 83

Query: 61  STIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPD 120
            T++E        SG        + +HPL+    S W ++F D++I+EQID+D++RT PD
Sbjct: 84  LTLHEE-------SG-------ENSDHPLNTSDDSKWKEYFDDNQILEQIDKDIRRTLPD 129

Query: 121 MHFFSGDS 128
           + FF G S
Sbjct: 130 LSFFQGKS 137

May act as a GTPase-activating protein for Rab family protein(s).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum GN=tbc1d5A PE=1 SV=1

 Score = 90.9 bits (224), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 11/170 (6%)

Query: 3   GIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKST 62
           G+P    +RS  W++ L  L  D   W       R +Y+ FK + ++NP   ++  D   
Sbjct: 372 GLPKDTTVRSIFWRIALGTLSKDPTTWVERTNSSRKKYETFKKNYIINPRN-SKDQDADL 430

Query: 63  IYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMH 122
                  + +      R  ++  + PLS  + S+WNQFF +     +I  D+ RT+P + 
Sbjct: 431 QQ-----QQQQQQQQQRKPVSLIDDPLSQSEDSLWNQFFDNENAQREISHDISRTYPGLG 485

Query: 123 FFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSD 172
           FF          Q+ +  IL +F+K  P I+Y+QGMNEILAP+ Y   +D
Sbjct: 486 FFE-----RLDIQDIMIRILFIFSKQYPKIKYLQGMNEILAPILYSVYND 530

May act as a GTPase-activating protein for Rab family protein(s).

Dictyostelium discoideum (taxid: 44689)

>sp|Q80XQ2|TBCD5_MOUSE TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 28/162 (17%)

Query: 11  RSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWK 70
           RS  WKL L  LP D+  W S++ + R+ Y   K+  + NP +   + D           
Sbjct: 87  RSICWKLFLCVLPQDKSQWISKIKELRAWYSSIKEIHITNPRKAAGQQDLMI-------- 138

Query: 71  CESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSF 130
                           +PLS  + S+WN+FFQD E+   I++DVKRT P+M FF  ++  
Sbjct: 139 ---------------NNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQENV- 182

Query: 131 ATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSD 172
               ++ L ++L  +A+ N  + Y QGM+E+LAP+ +    D
Sbjct: 183 ----RKILTDVLFCYARENEQLLYKQGMHELLAPIIFTLHCD 220

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 17/128 (13%)

Query: 3   GIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKST 62
           GIP   G+R   WK+LL YLP +R  W S LAK+R  Y  F  ++++ P           
Sbjct: 33  GIPCEGGLRCLCWKILLNYLPLERASWTSILAKQRGLYSQFLREMIIQPG---------- 82

Query: 63  IYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMH 122
                    +++  + R ++T ++HPL+    S WN +F+D+E++ QID+DV+R  PD+ 
Sbjct: 83  -------IAKANMGVFREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDIS 135

Query: 123 FFSGDSSF 130
           FF   + +
Sbjct: 136 FFQRATEY 143

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|Q54TA5|TBC5B_DICDI TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum GN=tbc1d5B PE=3 SV=1

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 34/164 (20%)

Query: 10  IRSTVWKLLLVYLPPDR-GLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEE 68
           +R   WKL L  L  +R   W  ++ ++R +Y+  K++   +P                 
Sbjct: 285 LRGIAWKLFLGGLDINRVDKWERDITQQRKRYEKLKEEHCFDPR---------------- 328

Query: 69  WKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDS 128
                      S  T+D  PLS    S WN+FF++ +  + I  D++RTHPD  FFS   
Sbjct: 329 ----------NSNSTYD--PLSQNDDSPWNKFFKNLDTQKIIKIDLERTHPDNDFFSNPV 376

Query: 129 SFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSD 172
                 +E +  IL V++K N  I Y QGM+E+LAP+ Y++  +
Sbjct: 377 I-----REMMATILFVYSKTNGIISYRQGMHELLAPIIYLYNQE 415

May act as a GTPase-activating protein for Rab family protein(s).

Dictyostelium discoideum (taxid: 44689)

>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 110 IDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPL 165
           +D+DV RT  +  FF G+ +    N E+++ IL+ +A  NP + Y QGM++++AP+
Sbjct: 488 VDKDVVRTDRNNQFFRGEDN---PNVESMRRILLNYAVYNPAVGYSQGMSDLVAPI 540

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|Q09830|YAD4_SCHPO TBC domain-containing protein C4G8.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4G8.04 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 103 DSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEIL 162
           +S  + QID D+ RT     FF G           L+ IL+ +++ NP I Y QGMN I 
Sbjct: 540 ESASVAQIDMDINRTMAKNVFFGGKGP----GIPKLRRILVAYSRHNPHIGYCQGMNVIG 595

Query: 163 APLYYVFKSDPD 174
           A L  ++ S+ D
Sbjct: 596 AFLLLLYASEED 607

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 22/105 (20%)

Query: 98  NQFFQDSEIMEQIDRDVKRTHPDMHFFS------------------GDSSFATSNQE--A 137
           + F++D   + +I++DV RT  ++ FF+                  G SS   SN     
Sbjct: 441 DDFWRDQ--LSRIEKDVHRTDRNITFFAECDAKKDGDDDNYDKDEFGFSSQINSNIHLIQ 498

Query: 138 LKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTF 182
           L+++LI + + N  + YVQGM+++L+PLY V + D    ++ S F
Sbjct: 499 LRDMLITYNQHNKNLGYVQGMSDLLSPLYVVLQDDTLAFWAFSAF 543

Most effectively accelerate the intrinsic GTPase activity of YPT7. It is also active, but to a lesser extent, on YPT31, YPT32 and YPT1. YPT6 and SEC4.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
255554050	468	conserved hypothetical protein [Ricinus	0.989	0.391	0.797	3e-83
224060367	356	predicted protein [Populus trichocarpa]	0.989	0.514	0.787	1e-81
357462717	432	TBC1 domain family member [Medicago trun	0.994	0.425	0.754	4e-80
224140847	341	predicted protein [Populus trichocarpa]	0.989	0.536	0.787	5e-80
449442333	446	PREDICTED: TBC1 domain family member 13-	0.972	0.403	0.787	1e-79
224128968	339	predicted protein [Populus trichocarpa]	0.951	0.519	0.812	6e-79
225433604	437	PREDICTED: TBC1 domain family member 13	0.983	0.416	0.792	7e-79
356512467	443	PREDICTED: TBC1 domain family member 13-	0.967	0.404	0.744	5e-76
82621142	387	RabGAP/TBC domain-containing protein-lik	0.972	0.465	0.738	8e-76
356528306	449	PREDICTED: TBC1 domain family member 13-	0.924	0.380	0.761	4e-74

>gi|255554050|ref|XP_002518065.1| conserved hypothetical protein [Ricinus communis] gi|223542661|gb|EEF44198.1| conserved hypothetical protein [Ricinus communis]

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/188 (79%), Positives = 167/188 (88%), Gaps = 5/188 (2%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIPDGAGIRSTVWKLLL YLP DR LW SELAKKRSQY+HFK++LL+NPSEI RRL+KS
Sbjct: 139 QGIPDGAGIRSTVWKLLLGYLPTDRSLWSSELAKKRSQYRHFKEELLMNPSEIARRLEKS 198

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
           T  E++E KCE+ G LSRSEITH EHPLSLGK+SIWNQFFQD+EI+EQIDRDVKRTHPDM
Sbjct: 199 TGCENDEPKCENRGVLSRSEITHGEHPLSLGKTSIWNQFFQDTEIIEQIDRDVKRTHPDM 258

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVS- 180
           HFF GDSSFA SNQ+AL+NILIVFAKLNPGIRYVQGMNEILAPL+YVF++DPDEE +   
Sbjct: 259 HFFCGDSSFAKSNQDALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFRNDPDEEMAACA 318

Query: 181 ---TFHFC 185
              TF FC
Sbjct: 319 EADTF-FC 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060367|ref|XP_002300164.1| predicted protein [Populus trichocarpa] gi|222847422|gb|EEE84969.1| predicted protein [Populus trichocarpa]

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 148/188 (78%), Positives = 163/188 (86%), Gaps = 5/188 (2%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIPDGAGIRSTVWKLLL YL PDR LW SELAKKRSQYKHFK+DLL+NPSEI RRL+K+
Sbjct: 32  QGIPDGAGIRSTVWKLLLGYLAPDRSLWSSELAKKRSQYKHFKEDLLMNPSEIARRLEKT 91

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
           T+  ++  K ES   LSRSEITH EHPLSLGKSS+WNQFFQDSEI+EQIDRDVKRTHPD+
Sbjct: 92  TVLNNDNGKSESRCVLSRSEITHGEHPLSLGKSSVWNQFFQDSEIIEQIDRDVKRTHPDL 151

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVS- 180
           HFFSGDSS A SNQEAL+NIL VFAKLNPGIRYVQGMNEILAPL+Y+FK+DPDEE +   
Sbjct: 152 HFFSGDSSLAKSNQEALRNILTVFAKLNPGIRYVQGMNEILAPLFYIFKNDPDEEMAACA 211

Query: 181 ---TFHFC 185
              TF FC
Sbjct: 212 EADTF-FC 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462717|ref|XP_003601640.1| TBC1 domain family member [Medicago truncatula] gi|355490688|gb|AES71891.1| TBC1 domain family member [Medicago truncatula]

 Score =  302 bits (774), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 141/187 (75%), Positives = 161/187 (86%), Gaps = 3/187 (1%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIPD  G+RST+WKLLL YLPPDR LW SELAKKRSQYK FK D+L+NPSEITRR+  S
Sbjct: 104 QGIPDSPGLRSTIWKLLLGYLPPDRSLWSSELAKKRSQYKRFKQDILINPSEITRRMFNS 163

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
             Y++++ KCE+ G LSRS+ITH EHPLSLGK+SIWNQFFQD++I+EQIDRDVKRTHPDM
Sbjct: 164 ASYDADDVKCETRGMLSRSQITHGEHPLSLGKTSIWNQFFQDTDIIEQIDRDVKRTHPDM 223

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEE---FS 178
           HFF GDS  A SNQEALKNILI+FAKLNPGIRYVQGMNE+LAPL+YVFK+DPDEE   FS
Sbjct: 224 HFFCGDSQLAKSNQEALKNILIIFAKLNPGIRYVQGMNEVLAPLFYVFKNDPDEENAAFS 283

Query: 179 VSTFHFC 185
            +   FC
Sbjct: 284 EADTFFC 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140847|ref|XP_002323790.1| predicted protein [Populus trichocarpa] gi|222866792|gb|EEF03923.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 148/188 (78%), Positives = 164/188 (87%), Gaps = 5/188 (2%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIPDG GIRSTVWKLLL YLPPDR LW SELAKKRSQYK FK++LL+NP +ITRRL+K+
Sbjct: 104 QGIPDGVGIRSTVWKLLLGYLPPDRSLWSSELAKKRSQYKRFKEELLMNPVKITRRLEKT 163

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
             +E+++ K ES   LSRS+ITH EHPLSLGKSSIWN+FFQDSEI+EQIDRDVKRTHPDM
Sbjct: 164 MGFENDDAKSESRYVLSRSKITHGEHPLSLGKSSIWNKFFQDSEIIEQIDRDVKRTHPDM 223

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVS- 180
           HFFSGDSSFA SNQEAL+NILIVFAKLNPGIRYVQGMNEILAPL+YVFK+DPDEE     
Sbjct: 224 HFFSGDSSFAKSNQEALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFKNDPDEEMEACA 283

Query: 181 ---TFHFC 185
              TF FC
Sbjct: 284 EADTF-FC 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442333|ref|XP_004138936.1| PREDICTED: TBC1 domain family member 13-like [Cucumis sativus] gi|449505611|ref|XP_004162521.1| PREDICTED: TBC1 domain family member 13-like [Cucumis sativus]

 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 148/188 (78%), Positives = 165/188 (87%), Gaps = 8/188 (4%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIPDG GIRSTVWKLLL YLPPDRGLW SELAKKRSQYKHFKD+LL+NPSEI+RR +K+
Sbjct: 120 QGIPDGPGIRSTVWKLLLGYLPPDRGLWTSELAKKRSQYKHFKDELLMNPSEISRRSEKA 179

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
             YE +E    + G LSRSEI+ +EHPLSLGK+SIWNQ+FQDSEI+EQIDRDVKRTHPDM
Sbjct: 180 KSYEHDE---TNKGPLSRSEISQEEHPLSLGKTSIWNQYFQDSEIIEQIDRDVKRTHPDM 236

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVS- 180
           HFFSGDSS A SNQEAL+NILIVFAKLNPGIRYVQGMNEILAPL+YVF+SDPDE+ + S 
Sbjct: 237 HFFSGDSSLAKSNQEALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFRSDPDEDNAASA 296

Query: 181 ---TFHFC 185
              TF FC
Sbjct: 297 EADTF-FC 303

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128968|ref|XP_002328857.1| predicted protein [Populus trichocarpa] gi|222839287|gb|EEE77624.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (763), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 143/176 (81%), Positives = 159/176 (90%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIPDG GIRSTVWKLLL YLPPDR LW SELAKKRSQYK FK++LL+NP +ITRRL+K 
Sbjct: 10  QGIPDGVGIRSTVWKLLLGYLPPDRSLWSSELAKKRSQYKRFKEELLMNPVKITRRLEKM 69

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
             +++++ K ES   LSRS+ITH EHPLSLGKSSIWN+FFQDSEI+EQIDRDVKRTHPDM
Sbjct: 70  MGFDNDDAKSESRYVLSRSKITHGEHPLSLGKSSIWNKFFQDSEIIEQIDRDVKRTHPDM 129

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEF 177
           HFFSGDSSFA SNQEAL+NILIVFAKLNPGIRYVQGMNEILAPL+YVFK+DPDEE 
Sbjct: 130 HFFSGDSSFAKSNQEALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFKNDPDEEM 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433604|ref|XP_002271213.1| PREDICTED: TBC1 domain family member 13 [Vitis vinifera] gi|298205157|emb|CBI17216.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (763), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 149/188 (79%), Positives = 164/188 (87%), Gaps = 6/188 (3%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIPDGAGIRSTVWKLLL YLP DRG W SELAKKRSQYKHFK++LL+NPSEITRRL KS
Sbjct: 109 QGIPDGAGIRSTVWKLLLGYLPTDRGHWSSELAKKRSQYKHFKEELLMNPSEITRRLGKS 168

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
           T  + E  K E SG LSRSEITH EHPLSLGK+SIWNQFFQD+EI+EQIDRDVKRTHPDM
Sbjct: 169 TSPDDEP-KSEGSGMLSRSEITHGEHPLSLGKTSIWNQFFQDTEIIEQIDRDVKRTHPDM 227

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVS- 180
           +FFSGD+  A +NQ+AL+NILIVFAKLNPGIRYVQGMNEILAPL+YVFK+DPDEE + S 
Sbjct: 228 NFFSGDTPSAKTNQDALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFKNDPDEENAASA 287

Query: 181 ---TFHFC 185
              TF FC
Sbjct: 288 EADTF-FC 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512467|ref|XP_003524940.1| PREDICTED: TBC1 domain family member 13-like isoform 1 [Glycine max]

 Score =  288 bits (738), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 134/180 (74%), Positives = 156/180 (86%), Gaps = 1/180 (0%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIPD AGIRST WKLLL YLPPDRGLW +ELAKKRSQYK FK+++ +NPSEITR++  S
Sbjct: 116 QGIPDAAGIRSTAWKLLLGYLPPDRGLWSAELAKKRSQYKQFKEEIFMNPSEITRKMFNS 175

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
           T  ++ +  C +   LSRSEITH EHPLSLGK+S+WNQFFQD+EI++QIDRDVKRTHPDM
Sbjct: 176 TNCDTGDANC-ARALLSRSEITHGEHPLSLGKTSVWNQFFQDTEIIDQIDRDVKRTHPDM 234

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVST 181
           HFFSGDS FA SNQEALKNILI+FAKLNPG++YVQGMNEILAPL+YV K+DPDEE + S 
Sbjct: 235 HFFSGDSQFAKSNQEALKNILIIFAKLNPGVQYVQGMNEILAPLFYVLKNDPDEENAASA 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82621142|gb|ABB86259.1| RabGAP/TBC domain-containing protein-like [Solanum tuberosum]

 Score =  288 bits (736), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 133/180 (73%), Positives = 157/180 (87%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIPDGAGIR+TVWKLLL YLP ++ LWP+EL KKRSQYKHFK++LLVNPSEITR+L+KS
Sbjct: 87  QGIPDGAGIRATVWKLLLGYLPTEKALWPTELVKKRSQYKHFKEELLVNPSEITRKLEKS 146

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
            I + E    E  G L RSEI   EHPLSLGK+SIWNQFFQD+EI+EQIDRDVKRTHPD+
Sbjct: 147 VILDDEGTVIEDKGALPRSEIPQGEHPLSLGKNSIWNQFFQDTEIIEQIDRDVKRTHPDL 206

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVST 181
           HFFSGD+ FA SNQ++L+NILI+FAKLNPGIRYVQGMNE+LAPL+YVF++DP+EE + S 
Sbjct: 207 HFFSGDTPFAKSNQDSLRNILIIFAKLNPGIRYVQGMNEVLAPLFYVFRNDPNEENAASA 266

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528306|ref|XP_003532745.1| PREDICTED: TBC1 domain family member 13-like [Glycine max]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 131/172 (76%), Positives = 152/172 (88%), Gaps = 1/172 (0%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIPD AGIRSTVWKLLL YLPPDRGLW +ELAKKR QYK FK+++ +NPSEITR++  S
Sbjct: 122 QGIPDAAGIRSTVWKLLLGYLPPDRGLWSAELAKKRFQYKQFKEEIFMNPSEITRKMYNS 181

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
              ++++  C +   LSRSEITH EHPLSLGK+S+WNQFFQD+EI++QIDRDVKRTHPDM
Sbjct: 182 ANCDTDDASC-ARALLSRSEITHGEHPLSLGKTSVWNQFFQDTEIIDQIDRDVKRTHPDM 240

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDP 173
           HFFSGDS FA SNQEALKNILI+FAKLNPG+RYVQGMNEILAPL+YVFK+DP
Sbjct: 241 HFFSGDSQFAKSNQEALKNILIIFAKLNPGVRYVQGMNEILAPLFYVFKNDP 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2119435	449	AT4G13730 [Arabidopsis thalian	0.994	0.409	0.695	6.3e-69
ZFIN|ZDB-GENE-080204-86	414	tbc1d13 "TBC1 domain family, m	0.264	0.118	0.518	1.7e-34
UNIPROTKB|E1BXI8	399	TBC1D13 "Uncharacterized prote	0.264	0.122	0.555	7.9e-34
UNIPROTKB|F1MXD4	399	TBC1D13 "Uncharacterized prote	0.378	0.175	0.44	3.1e-33
DICTYBASE|DDB_G0269052	604	DDB_G0269052 [Dictyostelium di	0.491	0.150	0.510	3.3e-33
UNIPROTKB|Q9NVG8	400	TBC1D13 "TBC1 domain family me	0.264	0.122	0.555	1.1e-32
RGD|1591937	400	Tbc1d13 "TBC1 domain family, m	0.264	0.122	0.555	1.1e-32
MGI|MGI:2385326	400	Tbc1d13 "TBC1 domain family, m	0.264	0.122	0.555	2.9e-32
UNIPROTKB|F1RR65	400	TBC1D13 "Uncharacterized prote	0.264	0.122	0.555	3e-32
UNIPROTKB|E2RQB4	400	TBC1D13 "Uncharacterized prote	0.264	0.122	0.555	1.5e-31

TAIR|locus:2119435 AT4G13730 [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 130/187 (69%), Positives = 158/187 (84%)

Query:     2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
             QG+PD AGIRS VWKLLL YL PDR LW SELAKKRSQYK FK++LL+NPSE+TR++DKS
Sbjct:   123 QGLPDDAGIRSIVWKLLLDYLSPDRSLWSSELAKKRSQYKQFKEELLMNPSEVTRKMDKS 182

Query:    62 TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
                +S + K ES G LSRSEITH++HPLSLG +S+WN FF+D+E++EQI+RDV RTHPDM
Sbjct:   183 KGGDSNDPKIESPGALSRSEITHEDHPLSLGTTSLWNNFFKDTEVLEQIERDVMRTHPDM 242

Query:   122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDE---EFS 178
             HFFSGDS+ A SNQ+ALKNIL +FAKLNPGIRYVQGMNEILAP++Y+FK+DPD+    ++
Sbjct:   243 HFFSGDSAVAKSNQDALKNILTIFAKLNPGIRYVQGMNEILAPIFYIFKNDPDKGNAAYA 302

Query:   179 VSTFHFC 185
              S   FC
Sbjct:   303 ESDAFFC 309

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

ZFIN|ZDB-GENE-080204-86 tbc1d13 "TBC1 domain family, member 13" [Danio rerio (taxid:7955)]

 Score = 146 (56.5 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
 Identities = 28/54 (51%), Positives = 38/54 (70%)

Query:   136 EALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFS----VSTFHFC 185
             E ++ IL ++AKLNPGI YVQGMNEI+ P+YY F +DP+ ++       TF FC
Sbjct:   209 EVVERILFIYAKLNPGIAYVQGMNEIVGPVYYTFATDPNSQWKEHAEADTF-FC 261

GO:0005622 "intracellular" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|E1BXI8 TBC1D13 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 7.9e-34, Sum P(3) = 7.9e-34
 Identities = 30/54 (55%), Positives = 38/54 (70%)

Query:   136 EALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFS----VSTFHFC 185
             E ++ IL ++AKLNPGI YVQGMNEI+ PLYY F +DP+ E+       TF FC
Sbjct:   208 EVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTF-FC 260

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1MXD4 TBC1D13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
 Identities = 33/75 (44%), Positives = 47/75 (62%)

Query:   115 KRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPD 174
             K + P M+ +    +   ++ E ++ IL ++AKLNPGI YVQGMNEI+ PLYY F +DP+
Sbjct:   187 KNSAPSMNEYVVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPN 246

Query:   175 EEF----SVSTFHFC 185
              E+       TF FC
Sbjct:   247 SEWREHAEADTF-FC 260

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

DICTYBASE|DDB_G0269052 DDB_G0269052 [Dictyostelium discoideum (taxid:44689)]

 Score = 265 (98.3 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
 Identities = 47/92 (51%), Positives = 68/92 (73%)

Query:    86 EHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATS-NQEALKNILIV 144
             +HPLS+   S WN++++D  I+  I++DV+RT P MHFF+       S + EAL+ IL +
Sbjct:    97 DHPLSVQTDSKWNEYWKDQNILIDIEKDVRRTFPSMHFFNYQQEDGKSIHYEALRRILFI 156

Query:   145 FAKLNPGIRYVQGMNEILAPLYYVFKSDPDEE 176
             +AKLNPGI+YVQGMNEIL  +YY+F +DPD++
Sbjct:   157 YAKLNPGIKYVQGMNEILGHVYYIFATDPDQD 188

GO:0032851 "positive regulation of Rab GTPase activity" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|Q9NVG8 TBC1D13 "TBC1 domain family member 13" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 1.1e-32, Sum P(3) = 1.1e-32
 Identities = 30/54 (55%), Positives = 38/54 (70%)

Query:   136 EALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFS----VSTFHFC 185
             E ++ IL ++AKLNPGI YVQGMNEI+ PLYY F +DP+ E+       TF FC
Sbjct:   209 EVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTF-FC 261

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

RGD|1591937 Tbc1d13 "TBC1 domain family, member 13" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 1.1e-32, Sum P(3) = 1.1e-32
 Identities = 30/54 (55%), Positives = 38/54 (70%)

Query:   136 EALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFS----VSTFHFC 185
             E ++ IL ++AKLNPGI YVQGMNEI+ PLYY F +DP+ E+       TF FC
Sbjct:   209 EVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTF-FC 261

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

MGI|MGI:2385326 Tbc1d13 "TBC1 domain family, member 13" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 2.9e-32, Sum P(3) = 2.9e-32
 Identities = 30/54 (55%), Positives = 38/54 (70%)

Query:   136 EALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFS----VSTFHFC 185
             E ++ IL ++AKLNPGI YVQGMNEI+ PLYY F +DP+ E+       TF FC
Sbjct:   209 EVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTF-FC 261

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

UNIPROTKB|F1RR65 TBC1D13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 151 (58.2 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
 Identities = 30/54 (55%), Positives = 37/54 (68%)

Query:   136 EALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFS----VSTFHFC 185
             E ++ IL ++AKLNPGI YVQGMNEI+ PLYY F +DP  E+       TF FC
Sbjct:   209 EVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPSSEWKEHAEADTF-FC 261

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|E2RQB4 TBC1D13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 152 (58.6 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
 Identities = 30/54 (55%), Positives = 38/54 (70%)

Query:   136 EALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFS----VSTFHFC 185
             E ++ IL ++AKLNPGI YVQGMNEI+ PLYY F +DP+ E+       TF FC
Sbjct:   209 EVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTF-FC 261

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
smart00164	216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	7e-17
pfam00566	206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	1e-16
COG5210	496	COG5210, COG5210, GTPase-activating protein [Gener	1e-09

>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p

 Score = 74.7 bits (184), Expect = 7e-17
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 102 QDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161
            D  I+ QI++D++RT P+  FF          QE+L+ +L  +A  NP + Y QGMN +
Sbjct: 42  DDKSIVHQIEKDLRRTFPEHSFFQDKEG---PGQESLRRVLKAYALYNPEVGYCQGMNFL 98

Query: 162 LAPLYYVFKSDPD 174
            APL  V + + D
Sbjct: 99  AAPLLLVMEDEED 111

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 76  FLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQ 135
            L  +     +       S +     +DS   EQI++DV RT P   FF          Q
Sbjct: 10  LLLGNLSESKQRDSVSQYSKLLKL--EDSPDEEQIEKDVPRTFPHHFFFKNGE-----GQ 62

Query: 136 EALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPD 174
           + L+ IL  ++  NP + Y QGMN I APL  V   + +
Sbjct: 63  QQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEE 101

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206

>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 98  NQFFQDSEIMEQIDRDVKRTHPD-MHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQ 156
                  EI+ QI++D+ RT PD   F +  S       E L+ +L  ++  NP + YVQ
Sbjct: 248 EAKIPTQEIISQIEKDLSRTFPDNSLFQTEISI----RAENLRRVLKAYSLYNPEVGYVQ 303

Query: 157 GMNEILAPLYYVFKSDPD 174
           GMN + APL  V +S+  
Sbjct: 304 GMNFLAAPLLLVLESEEQ 321

Length = 496

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG4567	370	consensus GTPase-activating protein [General funct	100.0
KOG1091	625	consensus Ypt/Rab-specific GTPase-activating prote	99.94
smart00164	199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	99.94
KOG2058	436	consensus Ypt/Rab GTPase activating protein [Intra	99.94
COG5210	496	GTPase-activating protein [General function predic	99.85
KOG1092	484	consensus Ypt/Rab-specific GTPase-activating prote	99.82
KOG2224	781	consensus Uncharacterized conserved protein, conta	99.82
PF00566	214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	99.79
KOG2223	586	consensus Uncharacterized conserved protein, conta	99.77
KOG2222	848	consensus Uncharacterized conserved protein, conta	99.71
KOG2197	488	consensus Ypt/Rab-specific GTPase-activating prote	99.69
KOG2221	267	consensus PDZ-domain interacting protein EPI64, co	99.62
KOG4347	671	consensus GTPase-activating protein VRP [General f	99.52
KOG1102	397	consensus Rab6 GTPase activator GAPCenA and relate	99.48
KOG4436	948	consensus Predicted GTPase activator NB4S/EVI5 (co	99.23
KOG1093	725	consensus Predicted protein kinase (contains TBC a	99.08
KOG4436	948	consensus Predicted GTPase activator NB4S/EVI5 (co	98.47
KOG2595	395	consensus Predicted GTPase activator protein [Sign	98.17
KOG1648	813	consensus Uncharacterized conserved protein, conta	97.6
KOG2224	781	consensus Uncharacterized conserved protein, conta	97.12

>KOG4567 consensus GTPase-activating protein [General function prediction only]

Probab=100.00  E-value=2.7e-37  Score=245.60  Aligned_cols=159  Identities=55%  Similarity=0.960  Sum_probs=134.1

Q ss_pred             CCCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921            1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS   80 (185)
Q Consensus         1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
                      +.|+|++.++|+.+|++||||+|++.+.|.+.++++|..|.+++++....|......                .+.  ..
T Consensus        33 ~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~----------------~~v--~~   94 (370)
T KOG4567|consen   33 FYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNS----------------KKV--DS   94 (370)
T ss_pred             hcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccc----------------ccc--cc
Confidence            369998777999999999999999999999999999999999999988766532110                000  01


Q ss_pred             ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcch----------------------hHHHHH
Q 029921           81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFAT----------------------SNQEAL  138 (185)
Q Consensus        81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~----------------------~~~~~L  138 (185)
                      ..+..+|||+.+++|.|++||++.+.+.||++||.||.|+..||+.....++                      -.....
T Consensus        95 ~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~  174 (370)
T KOG4567|consen   95 NDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAA  174 (370)
T ss_pred             CcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHH
Confidence            2256799999999999999999999999999999999999999998765541                      123346


Q ss_pred             HHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHh
Q 029921          139 KNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEF  177 (185)
Q Consensus       139 ~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~  177 (185)
                      .|||++||+.||+||||||||+|+|||++||.+|+++++
T Consensus       175 erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~  213 (370)
T KOG4567|consen  175 ERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEEN  213 (370)
T ss_pred             HHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhh
Confidence            899999999999999999999999999999999887655

>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=9.8e-28  Score=203.18  Aligned_cols=140  Identities=37%  Similarity=0.731  Sum_probs=126.8

Q ss_pred             CChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCccccccCCCCCC
Q 029921            9 GIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHP   88 (185)
Q Consensus         9 ~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   88 (185)
                      .+|+.+|+++||++|.+.+.|...+++.+..|..+.+.++.+|+.....                     .+.....++|
T Consensus        28 ~~Rgv~Wrl~L~vLp~~~ss~id~~~~~ra~~r~~r~~~L~dPh~~k~~---------------------~s~d~~idnP   86 (625)
T KOG1091|consen   28 NLRGVRWRLLLGVLPSENSSWIDNLRRLRANYRRLRRRLLIDPHNLKEN---------------------HSPDLPIDNP   86 (625)
T ss_pred             hhhhHHHHHhheecCCCchhHHHHHHHHhhhhhccccccccCccccccc---------------------cCCCcccCCc
Confidence            4899999999999999999999999999999999999999888864321                     1123467999


Q ss_pred             CCCCCCCccccccCChHHHHHHHHhhcCCCCCC-ccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHH
Q 029921           89 LSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM-HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYY  167 (185)
Q Consensus        89 l~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~  167 (185)
                      ||+.++|.|++||++.++.+.|++||.||||++ .||+.+     ..+.+|++||++||..||.+||.||||+|.||+++
T Consensus        87 LSq~~~S~W~rfF~d~EL~~~i~qDvsRtfPe~~~fFqs~-----~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~f  161 (625)
T KOG1091|consen   87 LSQNPQSVWNRFFRDAELEKTIDQDVSRTFPEHSLFFQSP-----EVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLF  161 (625)
T ss_pred             cccCCCchhhhhcCcHHHHHhhcchhhccCcchhhhhcCc-----hhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhh
Confidence            999999999999999999999999999999999 899988     89999999999999999999999999999999999


Q ss_pred             HhCCCCc
Q 029921          168 VFKSDPD  174 (185)
Q Consensus       168 ~~~~e~~  174 (185)
                      |+.-|..
T Consensus       162 Vl~~D~q  168 (625)
T KOG1091|consen  162 VLHVDNQ  168 (625)
T ss_pred             heehhHH
Confidence            9876544

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p

Probab=99.94  E-value=5.5e-27  Score=180.95  Aligned_cols=116  Identities=34%  Similarity=0.619  Sum_probs=95.6

Q ss_pred             CCCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921            1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS   80 (185)
Q Consensus         1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
                      .+|||++  +|+.+|+.++|+.+...+.       .+..|.+++++...                               
T Consensus         2 ~~Gip~~--~R~~vW~~ll~~~~~~~~~-------~~~~Y~~l~~~~~~-------------------------------   41 (199)
T smart00164        2 RKGVPPS--LRGVVWKLLLNAQPMDTSA-------DKDLYSRLLKETAP-------------------------------   41 (199)
T ss_pred             CCCCCHH--HHHHHHHHHhCCchhhhcc-------cchHHHHHHHhhcC-------------------------------
Confidence            3799999  9999999999998854432       36788887765421                               


Q ss_pred             ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHH
Q 029921           81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE  160 (185)
Q Consensus        81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~  160 (185)
                                           .+.+..++|++||.||+|+..+|+....   ..++.|.|||.+|+.+||++|||||||+
T Consensus        42 ---------------------~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~---~~~~~L~~IL~~~~~~~p~~gY~QGm~~   97 (199)
T smart00164       42 ---------------------KDKSIVHQIEKDLRRTFPEHSFFQDKEG---PGQESLRRVLKAYALYNPEVGYCQGMNF   97 (199)
T ss_pred             ---------------------CChhhHHHHhcccCCCCCCchhhcCCCc---ccHHHHHHHHHHHHHHCCCCceeccHHH
Confidence                                 1223468999999999999999987544   7999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCcHHhhhhhhh
Q 029921          161 ILAPLYYVFKSDPDEEFSVSTFH  183 (185)
Q Consensus       161 i~~~ll~~~~~e~~~~~af~~f~  183 (185)
                      ||++|++++.+   |+.|||+|.
T Consensus        98 i~~~ll~~~~~---e~~af~~~~  117 (199)
T smart00164       98 LAAPLLLVMPD---EEDAFWCLV  117 (199)
T ss_pred             HHHHHHHhcCC---HHHHHHHHH
Confidence            99999999876   666777764

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.2e-26  Score=195.06  Aligned_cols=74  Identities=32%  Similarity=0.522  Sum_probs=68.6

Q ss_pred             HHHHHHHHhhcCCCCCC-ccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhhh
Q 029921          105 EIMEQIDRDVKRTHPDM-HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFH  183 (185)
Q Consensus       105 ~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f~  183 (185)
                      ...++|+.|+.||||++ +.|....+   .++..|+|||.+||.+||.||||||||.|||++|+++.+   |+.|||+|+
T Consensus       195 ~~~~qI~~DL~RTfP~n~~~~~~~~~---~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~---EE~AFW~Lv  268 (436)
T KOG2058|consen  195 PVVKQIKLDLPRTFPDNFKGFDSEDS---DGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPS---EEDAFWMLV  268 (436)
T ss_pred             hHHHHHHhccccccCCCcccCCCCCc---hHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCC---hHHHHHHHH
Confidence            46899999999999999 78888866   679999999999999999999999999999999999987   888999997


Q ss_pred             c
Q 029921          184 F  184 (185)
Q Consensus       184 ~  184 (185)
                      +
T Consensus       269 ~  269 (436)
T KOG2058|consen  269 A  269 (436)
T ss_pred             H
Confidence            5

>COG5210 GTPase-activating protein [General function prediction only]

Probab=99.85  E-value=3.6e-21  Score=167.42  Aligned_cols=117  Identities=34%  Similarity=0.537  Sum_probs=91.9

Q ss_pred             CCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCccccc
Q 029921            2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE   81 (185)
Q Consensus         2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
                      +|||++  +|+.+|..++|+++.        .......|..+.+.+.....                             
T Consensus       211 ~gip~~--~r~~vw~~~~~~~~~--------~~~~~~~y~~~~~~~~~~~~-----------------------------  251 (496)
T COG5210         211 KGIPNE--LRGDVWEFLLGIGFD--------LDKNPGLYERLLNLHREAKI-----------------------------  251 (496)
T ss_pred             hcCChH--hhhhhHHHHhccchh--------hccCchHHHHHHHHHHhcCC-----------------------------
Confidence            689999  999999999999773        23344555555543321100                             


Q ss_pred             cCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHH
Q 029921           82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI  161 (185)
Q Consensus        82 ~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i  161 (185)
                                          .......+|++||.||+|.+..|+...+   ...+.|.|||.+|+.+||++|||||||+|
T Consensus       252 --------------------~~~~~~~~i~~Dl~rt~~~~~~f~~~~s---~~~~~L~rvL~ays~~~p~vgY~QgMn~l  308 (496)
T COG5210         252 --------------------PTQEIISQIEKDLSRTFPDNSLFQTEIS---IRAENLRRVLKAYSLYNPEVGYVQGMNFL  308 (496)
T ss_pred             --------------------CcHHHHHHHHccccccccccccccCccc---ccHHHHHHHHHHHHhcCCCCceeccHHHH
Confidence                                0114589999999999999999998754   34456999999999999999999999999


Q ss_pred             HHHHHHHhCCCCcHHhhhhhhh
Q 029921          162 LAPLYYVFKSDPDEEFSVSTFH  183 (185)
Q Consensus       162 ~~~ll~~~~~e~~~~~af~~f~  183 (185)
                      +|+|+.++..   |+.|||||+
T Consensus       309 ~a~ll~~~~~---Ee~AF~~l~  327 (496)
T COG5210         309 AAPLLLVLES---EEQAFWCLV  327 (496)
T ss_pred             HHHHHHHhhh---hHHHHHHHH
Confidence            9999999987   777888875

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=3.7e-21  Score=158.82  Aligned_cols=116  Identities=33%  Similarity=0.589  Sum_probs=103.1

Q ss_pred             CCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCccccc
Q 029921            2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE   81 (185)
Q Consensus         2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
                      +|||..  .|+.+|++|+||+|+++....-+++.+|++|..++.++.......                           
T Consensus       187 ~Gvp~~--~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~---------------------------  237 (484)
T KOG1092|consen  187 NGVPSK--MRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNG---------------------------  237 (484)
T ss_pred             CCCCcc--ccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCc---------------------------
Confidence            699999  999999999999999999999999999999999999986532210                           


Q ss_pred             cCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHH
Q 029921           82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI  161 (185)
Q Consensus        82 ~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i  161 (185)
                                         -.+.+..+||..|++|+.|+..+|+..     ..++.+.|||++|+.+||..||+||.|++
T Consensus       238 -------------------~~~~d~~rQI~id~prm~p~~~l~q~~-----~vq~~lerIl~iwairhpAsGyvqgindl  293 (484)
T KOG1092|consen  238 -------------------DEDQDTWRQIPIDIPRMNPHIPLFQQK-----IVQEMLERILYIWAIRHPASGYVQGINDL  293 (484)
T ss_pred             -------------------cccCccccccccCCCCCCccccchhhH-----HHHHHHHHHHHHHHHhcccccccccceee
Confidence                               023345789999999999999999988     89999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 029921          162 LAPLYYVFK  170 (185)
Q Consensus       162 ~~~ll~~~~  170 (185)
                      +.|++.++.
T Consensus       294 vtpf~vvfl  302 (484)
T KOG1092|consen  294 VTPFFVVFL  302 (484)
T ss_pred             echhhhhhh
Confidence            999997764

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=99.82  E-value=4.9e-21  Score=158.95  Aligned_cols=129  Identities=32%  Similarity=0.595  Sum_probs=100.3

Q ss_pred             CCCCCCCCCChHHHHHHHhCcCCCCCCC--cHHHHHHHHHHHHHHHHhhcc--CchhhhhhcccccchhhhhhhhccCCC
Q 029921            1 MQGIPDGAGIRSTVWKLLLVYLPPDRGL--WPSELAKKRSQYKHFKDDLLV--NPSEITRRLDKSTIYESEEWKCESSGF   76 (185)
Q Consensus         1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~--~~~~l~~~r~~Y~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (185)
                      .+||...  +|+.||++||.+|...++.  ....+..+|++|.++.++-+.  +|.+..                     
T Consensus       433 fggid~s--ir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~---------------------  489 (781)
T KOG2224|consen  433 FGGIDKS--IRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHI---------------------  489 (781)
T ss_pred             eccchhh--hhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH---------------------
Confidence            3699999  9999999999999887654  344567999999998766432  222110                     


Q ss_pred             ccccccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccC
Q 029921           77 LSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQ  156 (185)
Q Consensus        77 ~~~~~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~Q  156 (185)
                                            .|+++.  .-.++|||.||.++++||.++..   ++.+.+++||.-||++||.+||-|
T Consensus       490 ----------------------~fwknv--q~tvdkdvvrtdrnn~ff~gddn---pn~e~mk~illn~avyn~~m~ysq  542 (781)
T KOG2224|consen  490 ----------------------AFWKNV--QFTVDKDVVRTDRNNPFFCGDDN---PNTESMKNILLNFAVYNPAMGYSQ  542 (781)
T ss_pred             ----------------------HHHhhe--EEEEecceeeccCCCCcccCCCC---CcHHHHHHHHHhheeecccccccc
Confidence                                  111121  22488999999999999999887   899999999999999999999999


Q ss_pred             cHHHHHHHHHHHhCCCCcHHhhh
Q 029921          157 GMNEILAPLYYVFKSDPDEEFSV  179 (185)
Q Consensus       157 GM~~i~~~ll~~~~~e~~~~~af  179 (185)
                      ||++++||.+.-..+|++.||+|
T Consensus       543 gmsdllapvlcevqnesetfwcf  565 (781)
T KOG2224|consen  543 GMSDLLAPVLCEVQNESETFWCF  565 (781)
T ss_pred             cchhhcchhhhhhccccchhhhh
Confidence            99999888888888766544443

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []

Probab=99.79  E-value=6.7e-19  Score=136.64  Aligned_cols=73  Identities=48%  Similarity=0.780  Sum_probs=61.3

Q ss_pred             ChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhh
Q 029921          103 DSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTF  182 (185)
Q Consensus       103 ~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f  182 (185)
                      +.+..++|.+||.||+++...+...     ..+..|.+||.+|+..+|++||+|||++|++++++++.+   ++.|||||
T Consensus        43 ~~~~~~~I~~Dv~rt~~~~~~~~~~-----~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~---e~~af~~~  114 (214)
T PF00566_consen   43 DNKIFEQIDKDVNRTFPNSFLFKNE-----QNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLD---EEEAFWCF  114 (214)
T ss_dssp             CHTCHHHHHHHHCTSSTSCCCSTTH-----HHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSH---HHHHHHHH
T ss_pred             cchHHHHHHHhhhhhcccchhhhhc-----chHHHHHHHHHHhccccccccccchhhhhhhhhhhhccc---ccchhccc
Confidence            3455899999999999955555554     899999999999999999999999999999999988776   56677776


Q ss_pred             h
Q 029921          183 H  183 (185)
Q Consensus       183 ~  183 (185)
                      .
T Consensus       115 ~  115 (214)
T PF00566_consen  115 V  115 (214)
T ss_dssp             H
T ss_pred             c
Confidence            4

; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=99.77  E-value=3.4e-19  Score=147.74  Aligned_cols=70  Identities=27%  Similarity=0.428  Sum_probs=62.6

Q ss_pred             HHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhh
Q 029921          105 EIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTF  182 (185)
Q Consensus       105 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f  182 (185)
                      .-+.+|+.|+.||||+..+|+..+    +..+.|..||.+|+.+.|++||+|||++|+|+|++.+.    ...||-||
T Consensus       354 ~sv~~i~LDisrTfpsl~iFqk~G----Py~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd----~~~AFiaf  423 (586)
T KOG2223|consen  354 ASVELIKLDISRTFPSLSIFQKGG----PYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMD----LADAFIAF  423 (586)
T ss_pred             cchhheeechhccCcceeeeccCC----chHHHHHHHhhhheeecCccccccchHHHHHHHHHcCC----cHHHHHHH
Confidence            347899999999999999999886    79999999999999999999999999999999999885    45566555

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]

Probab=99.71  E-value=1.4e-17  Score=139.78  Aligned_cols=112  Identities=29%  Similarity=0.406  Sum_probs=93.0

Q ss_pred             CCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCccccc
Q 029921            2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE   81 (185)
Q Consensus         2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
                      +|||..  +|+..|+.|.|.+.        ..+.....|+..++.+-.                                
T Consensus       169 ggiphs--lr~~lw~rlsga~~--------kkk~ae~sy~~ilk~~an--------------------------------  206 (848)
T KOG2222|consen  169 GGIPHS--LRAFLWMRLSGALA--------KKKDAETSYEDILKACAN--------------------------------  206 (848)
T ss_pred             CCCCcc--hhHHHHHHhhhhhh--------hhccccccHHHHHHHhcc--------------------------------
Confidence            589999  99999999999854        223334567777665421                                


Q ss_pred             cCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHH
Q 029921           82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI  161 (185)
Q Consensus        82 ~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i  161 (185)
                                          +...+-.||++|+-|+.|++..|...++   .+...|+|||.+.|...|++||||||.-|
T Consensus       207 --------------------dk~~~~~qiekdllr~lpnn~cf~k~n~---~gi~~lrrilk~ia~ifpdigycqg~gvi  263 (848)
T KOG2222|consen  207 --------------------DKLMIGKQIEKDLLRILPNNACFSKKNG---EGIEALRRILKCIAFIFPDIGYCQGMGVI  263 (848)
T ss_pred             --------------------cccchhHHHHHHHHHhCCCcceeeCCCC---cchHHHHHHHhhheeecCCcccccCccHH
Confidence                                1123458999999999999999999888   89999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCcHHhhhhhh
Q 029921          162 LAPLYYVFKSDPDEEFSVSTF  182 (185)
Q Consensus       162 ~~~ll~~~~~e~~~~~af~~f  182 (185)
                      +|.+++.+.    |+.+||+.
T Consensus       264 va~lllf~~----ee~afwmm  280 (848)
T KOG2222|consen  264 VACLLLFCE----EENAFWMM  280 (848)
T ss_pred             HHHHHHHhc----chhHHHHH
Confidence            999999886    77888875

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]

Probab=99.69  E-value=8.1e-18  Score=145.17  Aligned_cols=71  Identities=27%  Similarity=0.561  Sum_probs=62.1

Q ss_pred             HHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhhh
Q 029921          107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFH  183 (185)
Q Consensus       107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f~  183 (185)
                      ...|.+||.||.+.+.+|.+...   ++...|.+||.+|+.+|+++||||||+++++|++.++.+|.   .+||||+
T Consensus       238 ~~~i~~dv~rtDr~~~~~~~~~n---~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~---~aFwcFv  308 (488)
T KOG2197|consen  238 KSRIEKDVGRTDRSLEFYEGEEN---PHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEV---EAFWCFV  308 (488)
T ss_pred             hhhhhhhccccchhhhhhhcccc---cCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCch---HHHHHHH
Confidence            46799999999999999998732   35999999999999999999999999999999999999844   4666664

>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=2.1e-16  Score=121.05  Aligned_cols=74  Identities=22%  Similarity=0.323  Sum_probs=68.5

Q ss_pred             ChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhh
Q 029921          103 DSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTF  182 (185)
Q Consensus       103 ~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f  182 (185)
                      +..+.+.|++|+.|-||.+..|.....   .++..|+|+|.+|.+++|+.||||+-..|++++++.+.    +++|||||
T Consensus       139 ~p~t~e~i~kdl~rqfp~hemf~s~~k---~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp----~rdaf~~~  211 (267)
T KOG2221|consen  139 DPKTAEGIHKDLHRQFPFHEMFGSSGK---TGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP----ARDAFWCF  211 (267)
T ss_pred             CCcchhhhccccccCCCcccccccccc---cchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc----HHHHHHHH
Confidence            445678999999999999999988776   78999999999999999999999999999999999998    89999999


Q ss_pred             h
Q 029921          183 H  183 (185)
Q Consensus       183 ~  183 (185)
                      +
T Consensus       212 v  212 (267)
T KOG2221|consen  212 V  212 (267)
T ss_pred             H
Confidence            6

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=99.52  E-value=4.8e-15  Score=128.33  Aligned_cols=112  Identities=25%  Similarity=0.393  Sum_probs=92.1

Q ss_pred             CCCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921            1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS   80 (185)
Q Consensus         1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
                      +.|||..  .|++.|.++.|...        .+......|..+++....                               
T Consensus       200 ~~gipe~--~rgeiW~l~sGav~--------~~l~~~Geygkll~~~~G-------------------------------  238 (671)
T KOG4347|consen  200 YNGFPED--PRGEIWYLASGAVA--------SLLLNPGEYGKLLHSVTG-------------------------------  238 (671)
T ss_pred             HHhcCCC--hHHHHHHhhhHHHH--------HhhcCcHHhhhhhhcccC-------------------------------
Confidence            4799999  99999999999733        455566777776654321                               


Q ss_pred             ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHH
Q 029921           81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE  160 (185)
Q Consensus        81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~  160 (185)
                                           +..-..+.|++|+.|..|+++-|+.+     .+...|+|||.+||..||+|||||-||-
T Consensus       239 ---------------------~~~~a~eEIE~Dl~rsLpEhpA~Q~e-----~gi~aLR~vL~Aya~~Np~vGYcQaMNI  292 (671)
T KOG4347|consen  239 ---------------------KRSVATEEIEPDLGRSLPEHPAFQSE-----PGIAALRRVLTAYAWSNPEVGYCQAMNI  292 (671)
T ss_pred             ---------------------CcccccccccCCCCCCCCcchhhhCC-----CchhhHHHHHHhhhccCCchhHHHHHHH
Confidence                                 01223567999999999999999998     8999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCcHHhhhhhhh
Q 029921          161 ILAPLYYVFKSDPDEEFSVSTFH  183 (185)
Q Consensus       161 i~~~ll~~~~~e~~~~~af~~f~  183 (185)
                      +++.++....    ++.|||+++
T Consensus       293 V~s~lll~~~----EEeafwll~  311 (671)
T KOG4347|consen  293 VGSELLLFCK----EEEAFWLLS  311 (671)
T ss_pred             HHHhhhhhhc----cchHHHHHH
Confidence            9998887775    788999874

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]

Probab=99.48  E-value=2.8e-14  Score=120.89  Aligned_cols=68  Identities=34%  Similarity=0.525  Sum_probs=61.2

Q ss_pred             HHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhhh
Q 029921          108 EQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFH  183 (185)
Q Consensus       108 ~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f~  183 (185)
                      .+| +|+.||+|.+..|....+   ..++.|.+||.+|++++|++||||||..++++++.++.    ++.|||.++
T Consensus       187 ~~~-~d~~Rt~~~~~~f~~~~~---~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~----ee~af~~lv  254 (397)
T KOG1102|consen  187 EII-RDLSRTFPAHLLFRKRYG---VGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP----EEEAFPLLV  254 (397)
T ss_pred             HHH-hhccCcCcchhhhhhhcC---cccccccccchhhcccCCCcccccchhhHhhhhhccCc----hhhhhhhhh
Confidence            566 999999999999998666   88999999999999999999999999999999999987    667777664

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]

Probab=99.23  E-value=4e-12  Score=112.41  Aligned_cols=71  Identities=28%  Similarity=0.400  Sum_probs=63.3

Q ss_pred             HHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhh
Q 029921          105 EIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTF  182 (185)
Q Consensus       105 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f  182 (185)
                      +..+.|..|.-||||++++|...-+   .++..+.++|.+|+..+|++|||||..++|++||+.+.    |+.||-.+
T Consensus       620 e~qhAi~idlgrtfp~h~~~~~qlg---~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~----e~~afell  690 (948)
T KOG4436|consen  620 EQQHAILIDLGRTFPTHPYFSDQLG---LGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMS----EENAFELL  690 (948)
T ss_pred             HHHHHHHHhhccccCCCHHHHhhcc---ccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcc----hhhHHHHH
Confidence            3467899999999999999998766   89999999999999999999999999999999999986    66666554

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=99.08  E-value=1.2e-10  Score=100.30  Aligned_cols=71  Identities=25%  Similarity=0.461  Sum_probs=60.6

Q ss_pred             HHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHH-hCCCCcHHhhhhhh
Q 029921          107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYV-FKSDPDEEFSVSTF  182 (185)
Q Consensus       107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~-~~~e~~~~~af~~f  182 (185)
                      -+||+.|++|+.........+     .+.+.|+|+|.+|+-.+|...|.||.-.+++||++. ++++..+|.++..|
T Consensus       391 drqievdiprchQyd~~lsSp-----~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~f  462 (725)
T KOG1093|consen  391 DRQIEVDIPRCHQYDELLSSP-----KGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATF  462 (725)
T ss_pred             hhhhhcccchhhhcccccCCH-----HHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHH
Confidence            579999999999877777766     899999999999999999999999999999999987 46655555555554

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]

Probab=98.47  E-value=7.4e-07  Score=79.74  Aligned_cols=76  Identities=24%  Similarity=0.274  Sum_probs=63.0

Q ss_pred             ChHHHHHHHHhhcCCCCCCccccCCCCcc----hhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhh
Q 029921          103 DSEIMEQIDRDVKRTHPDMHFFSGDSSFA----TSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFS  178 (185)
Q Consensus       103 ~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~----~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~a  178 (185)
                      +..+...|..|+.||.|++.+|.......    .-.++.|+++...|...+-++|||||=+.+++.+++.+.    ++.+
T Consensus       224 k~~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~----~E~a  299 (948)
T KOG4436|consen  224 KELHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMP----VEEA  299 (948)
T ss_pred             hhHHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCc----HHHH
Confidence            34567899999999999999998765410    125999999999999999999999999999999999986    5556


Q ss_pred             hhhh
Q 029921          179 VSTF  182 (185)
Q Consensus       179 f~~f  182 (185)
                      |..+
T Consensus       300 ssv~  303 (948)
T KOG4436|consen  300 SSVK  303 (948)
T ss_pred             HHHH
Confidence            5544

>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]

Probab=98.17  E-value=7.3e-07  Score=72.99  Aligned_cols=63  Identities=19%  Similarity=0.272  Sum_probs=44.0

Q ss_pred             HHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhC
Q 029921          107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFK  170 (185)
Q Consensus       107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~  170 (185)
                      .+|+..||.|++...+.-... ......++.|..++..--..+|.+.|-||.||||..|++++.
T Consensus        97 ~nQV~LDv~RSl~rfppg~p~-~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g  159 (395)
T KOG2595|consen   97 YNQVILDVERSLGRFPPGIPK-ELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG  159 (395)
T ss_pred             cceEEEehhhhhccCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh
Confidence            468999999997544321111 000134556666555556777999999999999999999986

>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]

Probab=97.60  E-value=3.3e-06  Score=72.38  Aligned_cols=68  Identities=31%  Similarity=0.557  Sum_probs=57.6

Q ss_pred             HHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhh
Q 029921          107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVS  180 (185)
Q Consensus       107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~  180 (185)
                      +..|++|+.|..++..||.+.     .+.+. +++.++|...|-+-||.|||.|+.+|++..+.++...-++|.
T Consensus       607 ~~~~~kd~e~~~~~~~~fs~~-----~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s  674 (813)
T KOG1648|consen  607 LHRIDKDVERCDRNLMFFSNK-----DNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFS  674 (813)
T ss_pred             eeeecchhhhCcchheeecCC-----cchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCc
Confidence            467999999999999999987     55666 889999999999999999999999999988887665554443

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=97.12  E-value=0.00052  Score=58.34  Aligned_cols=83  Identities=20%  Similarity=0.312  Sum_probs=51.0

Q ss_pred             CCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhC------CCCCccCc
Q 029921           84 HDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLN------PGIRYVQG  157 (185)
Q Consensus        84 ~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~------p~igY~QG  157 (185)
                      +-.||..-+++++      +.+.++.|-....--.|.+.+-++.       .+.|.-||--  +.|      .-+|-+||
T Consensus       507 drnn~ff~gddnp------n~e~mk~illn~avyn~~m~ysqgm-------sdllapvlce--vqnesetfwcfvglmqg  571 (781)
T KOG2224|consen  507 DRNNPFFCGDDNP------NTESMKNILLNFAVYNPAMGYSQGM-------SDLLAPVLCE--VQNESETFWCFVGLMQG  571 (781)
T ss_pred             cCCCCcccCCCCC------cHHHHHHHHHhheeecccccccccc-------hhhcchhhhh--hccccchhhhhhhhhcc
Confidence            4456776666653      6677887876654444444433332       2333333321  111      13799999


Q ss_pred             HHHHHHHHHHHhCCCCcHHhhhhh
Q 029921          158 MNEILAPLYYVFKSDPDEEFSVST  181 (185)
Q Consensus       158 M~~i~~~ll~~~~~e~~~~~af~~  181 (185)
                      |++++||++.-..+|++.||+|..
T Consensus       572 msdlvapilaevldesdtfwcfvg  595 (781)
T KOG2224|consen  572 MSDLVAPILAEVLDESDTFWCFVG  595 (781)
T ss_pred             chhhhhhHHHhhhccccchhhhhh
Confidence            999999999999987775555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
1fkm_A	396	Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p		2e-04
2g77_A	410	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-04
3dzx_A	346	Crystal Structure Of The Rabgap Domain Of Human Tbc		2e-04

>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 75  GFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSN 134
           GFL R      E+  SL K +  +Q  +D     QI+ D+ RT+P +  +   S      
Sbjct: 59  GFLQRKR---KEYRDSL-KHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSV----- 109
Query: 135 QEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSD 172
           Q +L+ IL ++A  +P   YVQG+N+++ P +  F ++
Sbjct: 110 QNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTE 147

>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 75  GFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSN 134
           GFL R      E+  SL K +  +Q  +D     QI+ D+ RT+P +  +   S      
Sbjct: 79  GFLQRKR---KEYRDSL-KHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSV----- 129
Query: 135 QEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSD 172
           Q +L+ IL ++A  +P   YVQG+N+++ P +  F ++
Sbjct: 130 QNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTE 167

>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 109 QIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYV 168
           QI  D+ RT+P +  F          QE  + IL ++A  +P   YVQG+N+++ P + V
Sbjct: 108 QIHIDIPRTNPLIPLFQQPLV-----QEIFERILFIWAIRHPASGYVQGINDLVTPFFVV 162
Query: 169 FKSDPDEE 176
           F S+  EE
Sbjct: 163 FLSEYVEE 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	2e-31
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	9e-31
2qq8_A	334	TBC1 domain family member 14; structural genomics	2e-13
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	8e-12
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	6e-11

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396

 Score =  116 bits (291), Expect = 2e-31
 Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 55/178 (30%)

Query: 3   GIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKST 62
           GIP     R  VWKLL+ YLP +       L +KR +Y+                     
Sbjct: 33  GIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSL------------------ 72

Query: 63  IYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMH 122
                                         K +  +Q  +D     QI+ D+ RT+P + 
Sbjct: 73  ------------------------------KHTFSDQHSRDIPTWHQIEIDIPRTNPHIP 102

Query: 123 FFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVS 180
            +   S      Q +L+ IL ++A  +P   YVQG+N+++ P +  F ++      + 
Sbjct: 103 LYQFKS-----VQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID 155

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345

 Score =  113 bits (284), Expect = 9e-31
 Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 55/181 (30%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
            GIP    +R   WKLL  YLP +    P+ L +K+ +Y  F +    + ++   +    
Sbjct: 49  SGIPKP--VRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQ---- 102

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
                                                      +   QI  D+ R  P+ 
Sbjct: 103 -------------------------------------------DTYRQIHIDIPRMSPEA 119

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVST 181
                         E  + IL ++A  +P   YVQG+N+++ P + VF  +  E   V T
Sbjct: 120 LILQPK------VTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDT 173

Query: 182 F 182
            
Sbjct: 174 V 174

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334

 Score = 66.0 bits (161), Expect = 2e-13
 Identities = 36/164 (21%), Positives = 51/164 (31%), Gaps = 46/164 (28%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIP    +R  VW L +           +EL      +    D  L    E  R L   
Sbjct: 47  QGIPPS--VRGKVWSLAI----------GNELNITHELF----DICLARAKERWRSLSTG 90

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
                 E    S+                                +E I  D+ RT P++
Sbjct: 91  GSEVENEDAGFSAA--------------------------DREASLELIKLDISRTFPNL 124

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPL 165
             F     +     + L +IL  +    P + YVQGM+ I A L
Sbjct: 125 CIFQQGGPY----HDMLHSILGAYTCYRPDVGYVQGMSFIAAVL 164

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331

 Score = 61.3 bits (149), Expect = 8e-12
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 102 QDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161
           Q +     I  D+ RT P   +FS       + Q +L NIL  ++ L+  + Y QG++ +
Sbjct: 99  QLTSQQHAILIDLGRTFPTHPYFSAQLG---AGQLSLYNILKAYSLLDQEVGYCQGLSFV 155

Query: 162 LAPL 165
              L
Sbjct: 156 AGIL 159

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 102 QDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161
           +DS     I RD+ RT P   +F          QE+L  I   ++  +  I Y QG + +
Sbjct: 65  KDSAQESVITRDIHRTFPAHDYFKDTGG---DGQESLYKICKAYSVYDEDIGYCQGQSFL 121

Query: 162 LAPL 165
            A L
Sbjct: 122 AAVL 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	99.97
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	99.97
2qq8_A	334	TBC1 domain family member 14; structural genomics	99.95
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	99.94
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	99.93
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	99.89
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	99.46

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=99.97  E-value=2.7e-31  Score=223.85  Aligned_cols=116  Identities=32%  Similarity=0.560  Sum_probs=103.4

Q ss_pred             CCCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921            1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS   80 (185)
Q Consensus         1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
                      .+|||+.  +|+.||++|||++|.+.++|...+++++..|.++++++.....                            
T Consensus        31 ~~GIP~~--lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~----------------------------   80 (396)
T 1fkm_A           31 WNGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQH----------------------------   80 (396)
T ss_dssp             TTCCCGG--GHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSC----------------------------
T ss_pred             HcCCCHH--HHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccC----------------------------
Confidence            3799999  9999999999999999999999999999999999988753100                            


Q ss_pred             ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHH
Q 029921           81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE  160 (185)
Q Consensus        81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~  160 (185)
                                          ..+.+..++|++||.||+|++++|+..     .+++.|.|||++||++||++|||||||+
T Consensus        81 --------------------~~~~~~~~qI~~Dv~RT~p~~~~F~~~-----~~~~~L~rIL~aya~~np~iGY~QGmn~  135 (396)
T 1fkm_A           81 --------------------SRDIPTWHQIEIDIPRTNPHIPLYQFK-----SVQNSLQRILYLWAIRHPASGYVQGIND  135 (396)
T ss_dssp             --------------------STHHHHHHHHHHHGGGSSTTSGGGGSH-----HHHHHHHHHHHHHHHHCTTTCSCTTHHH
T ss_pred             --------------------cccHHHHHHHHHHhhhhCCCcccccCc-----hHHHHHHHHHHHHHHHCCCCCcccCcHH
Confidence                                134567899999999999999999976     8999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 029921          161 ILAPLYYVFKS  171 (185)
Q Consensus       161 i~~~ll~~~~~  171 (185)
                      |++||++++..
T Consensus       136 i~a~ll~v~~~  146 (396)
T 1fkm_A          136 LVTPFFETFLT  146 (396)
T ss_dssp             HHHHHHHHHHG
T ss_pred             HHHHHHHHHHH
Confidence            99999998743

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=99.97  E-value=2.2e-31  Score=220.65  Aligned_cols=128  Identities=27%  Similarity=0.496  Sum_probs=108.9

Q ss_pred             CCCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921            1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS   80 (185)
Q Consensus         1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
                      .+|||+.  +|+.||++|||++|.+.+.|...+++++..|.++++++...+..                           
T Consensus        48 ~~GiP~~--~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~---------------------------   98 (345)
T 2qfz_A           48 WSGIPKP--VRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRND---------------------------   98 (345)
T ss_dssp             TTCCCGG--GHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC---------------------------------
T ss_pred             HCCCCHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCc---------------------------
Confidence            3799999  99999999999999999999999999999999999887532100                           


Q ss_pred             ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHH
Q 029921           81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE  160 (185)
Q Consensus        81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~  160 (185)
                                          -.+.+..++|++||.||+|+ ++|+..     ..++.|.|||.+||++||++|||||||+
T Consensus        99 --------------------~~~~~~~~~I~~Dv~RT~p~-~~F~~~-----~~~~~L~rIL~~ya~~~p~vgY~QGm~~  152 (345)
T 2qfz_A           99 --------------------EVHQDTYRQIHIDIPRMSPE-ALILQP-----KVTEIFERILFIWAIRHPASGYVQGIND  152 (345)
T ss_dssp             ----------------------CHHHHHHHHHHGGGCSCH-HHHTSH-----HHHHHHHHHHHHHHHHCTTTCCCTTHHH
T ss_pred             --------------------cchHHHHHHHHHhCcccCCc-cccCCc-----hHHHHHHHHHHHHHHHCCCCCcccChHH
Confidence                                02446789999999999999 999876     7889999999999999999999999999


Q ss_pred             HHHHHHHHhCCCC---------------------cHHhhhhhhh
Q 029921          161 ILAPLYYVFKSDP---------------------DEEFSVSTFH  183 (185)
Q Consensus       161 i~~~ll~~~~~e~---------------------~~~~af~~f~  183 (185)
                      |+|||++++.++.                     .|+.|||||+
T Consensus       153 i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~  196 (345)
T 2qfz_A          153 LVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMS  196 (345)
T ss_dssp             HHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHH
Confidence            9999999885432                     3788999985

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=99.95  E-value=3.6e-29  Score=206.63  Aligned_cols=131  Identities=24%  Similarity=0.415  Sum_probs=91.8

Q ss_pred             CCCCCCCCChHHHHHHHhCcC-CCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921            2 QGIPDGAGIRSTVWKLLLVYL-PPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS   80 (185)
Q Consensus         2 ~Gip~~~~~R~~vW~~lLg~~-~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
                      +|||++  +|+.||++|||+. +.+...+...+++.+..|.++......                               
T Consensus        47 ~GIP~~--lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~-------------------------------   93 (334)
T 2qq8_A           47 QGIPPS--VRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSE-------------------------------   93 (334)
T ss_dssp             TCCCHH--HHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC----------------------------------------
T ss_pred             CCCCHH--HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhcccccc-------------------------------
Confidence            799999  9999999999984 333333445555555555554332110                               


Q ss_pred             ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHH
Q 029921           81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE  160 (185)
Q Consensus        81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~  160 (185)
                       .+..+.|++..         .+.+..++|++||.||+|++++|+..+    .+++.|.|||.+||.+||++|||||||+
T Consensus        94 -~~~~d~~~~~~---------~~~~~~~~I~~Dv~RT~p~~~~F~~~~----~~~~~L~rIL~aya~~~p~vgY~QGm~~  159 (334)
T 2qq8_A           94 -VENEDAGFSAA---------DREASLELIKLDISRTFPNLCIFQQGG----PYHDMLHSILGAYTCYRPDVGYVQGMSF  159 (334)
T ss_dssp             -----------------------CCHHHHHHHHHHTSSGGGCSSSTTS----TTHHHHHHHHHHHHHHCTTTCCCTTHHH
T ss_pred             -Ccccccccccc---------cchhHHHHHHHHHhhcCCCchhhcCCC----chHHHHHHHHHHHHHhCCCCCcchhHHH
Confidence             01111222111         234568999999999999999998753    6789999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCcHHhhhhhhh
Q 029921          161 ILAPLYYVFKSDPDEEFSVSTFH  183 (185)
Q Consensus       161 i~~~ll~~~~~e~~~~~af~~f~  183 (185)
                      |+|+|++++.    |+.|||||+
T Consensus       160 iaa~lLl~~~----E~~aF~~~~  178 (334)
T 2qq8_A          160 IAAVLILNLD----TADAFIAFS  178 (334)
T ss_dssp             HHHHHHHHSC----HHHHHHHHH
T ss_pred             HHHHHHhcCC----HHHHHHHHH
Confidence            9999999875    788999885

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=99.94  E-value=9.1e-27  Score=190.30  Aligned_cols=108  Identities=26%  Similarity=0.421  Sum_probs=90.6

Q ss_pred             CCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCccccc
Q 029921            2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE   81 (185)
Q Consensus         2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
                      +|||+.  +|+.||++|+|+.+.         ...+..|..++++.                                  
T Consensus        32 ~GIP~~--lR~~vW~~llg~~~~---------~~~~~~Y~~l~~~~----------------------------------   66 (310)
T 3hzj_A           32 SGVPEA--LRAEVWQLLAGCHDN---------QAMLDRYRILITKD----------------------------------   66 (310)
T ss_dssp             HCCCGG--GHHHHHHHHTTCCCC---------HHHHHHHHHHTTSC----------------------------------
T ss_pred             CCCCHH--HHHHHHHHHHCCCcc---------hhHHHHHHHHHhcc----------------------------------
Confidence            599999  999999999999762         23446677653220                                  


Q ss_pred             cCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHH
Q 029921           82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI  161 (185)
Q Consensus        82 ~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i  161 (185)
                                            ....++|++||.||+|++++|....+   .+++.|.|||.+|+.+||++|||||||+|
T Consensus        67 ----------------------~~~~~~I~~Dv~Rt~p~~~~f~~~~~---~~~~~L~~IL~ay~~~~p~igY~QGm~~i  121 (310)
T 3hzj_A           67 ----------------------SAQESVITRDIHRTFPAHDYFKDTGG---DGQESLYKICKAYSVYDEDIGYCQGQSFL  121 (310)
T ss_dssp             ----------------------CTTHHHHHHHHTTSSTTSTTTSSTTS---HHHHHHHHHHHHHHHHCTTTCSCTTHHHH
T ss_pred             ----------------------CCcHHHHHHHHHhhCCCchhhcCCCc---hhHHHHHHHHHHHHHHCCCCCccCCHHHH
Confidence                                  11257999999999999999998765   78999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCcHHhhhhhhh
Q 029921          162 LAPLYYVFKSDPDEEFSVSTFH  183 (185)
Q Consensus       162 ~~~ll~~~~~e~~~~~af~~f~  183 (185)
                      +|+|++++.    |+.|||||+
T Consensus       122 aa~lL~~~~----e~~aF~~l~  139 (310)
T 3hzj_A          122 AAVLLLHMP----EEQAFCVLV  139 (310)
T ss_dssp             HHHHHHHSC----HHHHHHHHH
T ss_pred             HHHHHHhCC----HHHHHHHHH
Confidence            999999984    788888875

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=99.93  E-value=1.5e-27  Score=196.49  Aligned_cols=70  Identities=27%  Similarity=0.387  Sum_probs=64.6

Q ss_pred             HHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhhh
Q 029921          107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFH  183 (185)
Q Consensus       107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f~  183 (185)
                      .++|++||.||+|++++|....+   .+++.|.|||.+|+.+||++|||||||+|+|+|++++.    |+.|||||+
T Consensus       104 ~~~I~~Dv~Rt~~~~~~f~~~~~---~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~----E~~aF~~l~  173 (331)
T 3qye_A          104 QHAILIDLGRTFPTHPYFSAQLG---AGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS----EEEAFKMLK  173 (331)
T ss_dssp             HHHHHHHHTTSSTTSTTTCSTTC---HHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSC----HHHHHHHHH
T ss_pred             hhHHHHhhcccCCCchhhcCCCc---ccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhh----HHHHHHHHH
Confidence            47999999999999999998765   89999999999999999999999999999999998884    778888885

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=99.89  E-value=2.1e-24  Score=175.04  Aligned_cols=73  Identities=23%  Similarity=0.332  Sum_probs=62.1

Q ss_pred             HHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhhh
Q 029921          106 IMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFH  183 (185)
Q Consensus       106 ~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f~  183 (185)
                      ..++|++||.||+|+++.|..... ....++.|.|||.+|+.+||++|||||||+|+|+|++++.    |+.|||||+
T Consensus        82 ~~~qI~~Dv~RT~~~~~~~~~~~~-~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~----e~~aF~~l~  154 (292)
T 4hl4_A           82 DYQQVLLDVRRSLRRFPPGMPEEQ-REGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVG----ERLATSLVE  154 (292)
T ss_dssp             THHHHHHHHHTTGGGSCTTSCHHH-HHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHC----HHHHHHHHH
T ss_pred             hHHHHHHhhhhhhhhccCCCCHHH-HHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcC----HHHHHHHHH
Confidence            368999999999999887754210 0156889999999999999999999999999999999885    888999885

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=99.46  E-value=2.4e-15  Score=121.71  Aligned_cols=42  Identities=29%  Similarity=0.506  Sum_probs=40.1

Q ss_pred             CCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHh
Q 029921            3 GIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDD   46 (185)
Q Consensus         3 Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~   46 (185)
                      |||+.  +|+.||++||||+|.+++.|..+++++|++|.++++.
T Consensus        51 ~IP~~--~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~   92 (294)
T 3qwl_A           51 PLPSM--YRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHA   92 (294)
T ss_dssp             CCCHH--HHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHH--HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence            49999  9999999999999999999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1fkma1	194	a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {	3e-20

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.5 bits (200), Expect = 3e-20
 Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 55/184 (29%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
            GIP     R  VWKLL+ YLP +       L +KR +Y+                    
Sbjct: 31  NGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKH--------------- 73

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
                                            +  +Q  +D     QI+ D+ RT+P +
Sbjct: 74  ---------------------------------TFSDQHSRDIPTWHQIEIDIPRTNPHI 100

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVST 181
             +   S      Q +L+ IL ++A  +P   YVQG+N+++ P +  F ++      +  
Sbjct: 101 PLYQFKS-----VQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDD 155

Query: 182 FHFC 185
               
Sbjct: 156 VEIK 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1fkma1	194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	100.0

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-36  Score=228.03  Aligned_cols=117  Identities=32%  Similarity=0.563  Sum_probs=104.4

Q ss_pred             CCCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921            1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS   80 (185)
Q Consensus         1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
                      ++|||+.  +|+.||++|||++|.+.+.|...+.++++.|..+.+.......                            
T Consensus        30 ~~Gip~~--lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~----------------------------   79 (194)
T d1fkma1          30 WNGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQH----------------------------   79 (194)
T ss_dssp             TTCCCGG--GHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSC----------------------------
T ss_pred             HcCCChH--HHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhccc----------------------------
Confidence            5899999  9999999999999999999999999999999998877543111                            


Q ss_pred             ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHH
Q 029921           81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE  160 (185)
Q Consensus        81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~  160 (185)
                                          ..+.+..++|++||.||+|++++|..+     .+++.|.|||.+||.+||++|||||||+
T Consensus        80 --------------------~~~~~~~~~I~~Dv~RT~~~~~~f~~~-----~~~~~L~rIL~~ya~~np~~gY~QGmn~  134 (194)
T d1fkma1          80 --------------------SRDIPTWHQIEIDIPRTNPHIPLYQFK-----SVQNSLQRILYLWAIRHPASGYVQGIND  134 (194)
T ss_dssp             --------------------STHHHHHHHHHHHGGGSSTTSGGGGSH-----HHHHHHHHHHHHHHHHCTTTCSCTTHHH
T ss_pred             --------------------ccchHHHHHHHHHHHhcCCcccccccc-----hhHHHHHHHHHHHHHHCCCCCeeecchH
Confidence                                135577899999999999999999877     8999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 029921          161 ILAPLYYVFKSD  172 (185)
Q Consensus       161 i~~~ll~~~~~e  172 (185)
                      |||||++++..+
T Consensus       135 i~a~ll~v~~~~  146 (194)
T d1fkma1         135 LVTPFFETFLTE  146 (194)
T ss_dssp             HHHHHHHHHHGG
T ss_pred             HHHHHHHHHhhh
Confidence            999999998654