Citrus Sinensis ID: 029950

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTTTNS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHccccccccHHHHcHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEcccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHcccccccccccccccHHHcccccccccHcccccccccccHEEHHHHHHHccccccccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
malssisplsikslnfcsssskgpyqlhalskpLWVACQissktesdgqfpdcsnnqcagpyaklkNWRVFVSTALAAAVVASCSSNISALADLNKYeaetrgefgigsaaqfgsADLRKAVHVKEnfrranftsadmresdfsgskfngAYLEKAVAYKAnftgadlsDTLMDRMVKLVTTTNS
Flexible Loop (DISEMBL)
malssisplsiKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENfrranftsadmresdfsgSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTTTNS
Low Complexity Region (SEG)
MAlssisplsikslNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRvfvstalaaavvascssnisaLADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTTTNS
Disordered region (IsUnstruct)
************************YQLHALSKPLWVACQIS**********DCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRR****************KFNGAYLEKAVAYKANFTGADLSDTLMDRMVKL******
Disordered Region (DISOPRED)
******S*****************************************************PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVT*T**
Disordered Region (DISEMBL)
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISS********PDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTTTNS
Disordered Region (DISPRO)
**************************L*ALSKPLWVACQISSKTESDGQFPDCSNNQC******LKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTTT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTTTNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q8H1Q1	280	Thylakoid lumenal protein	yes	no	0.929	0.614	0.611	1e-43
P74297	574	Serine/threonine-protein	N/A	no	0.491	0.158	0.326	0.0002

>sp|Q8H1Q1|TL225_ARATH Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1

 Score =  175 bits (444), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/180 (61%), Positives = 134/180 (74%), Gaps = 8/180 (4%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQ--- 57
           MA SS+SPL +KSL+   SSS      +   + L    Q+SS+  S+ +  D SN +   
Sbjct: 1   MAFSSLSPLPMKSLDISRSSSSVSRSPYHFQRYLLRRLQLSSR--SNLEIKDSSNTREGC 58

Query: 58  CAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSAD 117
           C+   A+   W+  +S A+AAAV+AS SS + A+A+LN++EA+TRGEFGIGSAAQ+GSAD
Sbjct: 59  CSS--AESNTWKRILSAAMAAAVIAS-SSGVPAMAELNRFEADTRGEFGIGSAAQYGSAD 115

Query: 118 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
           L K VH  ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMV
Sbjct: 116 LSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMV 175

Arabidopsis thaliana (taxid: 3702)

>sp|P74297|SPKB_SYNY3 Serine/threonine-protein kinase B OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spkB PE=1 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 71  FVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRR 130
            V   LA A V   +   + L + N  +AE        + A FG A L+  +    N   
Sbjct: 456 LVGIVLAKAFVPGINCYQANLTNANFEQAEL-------TRADFGKARLKNVIFKGANLSD 508

Query: 131 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           A F  AD+R +D  G+  NG   + A    ANF+GADL
Sbjct: 509 AYFGYADLRGADLRGANLNGVNFKYANLQGANFSGADL 546

Protein kinase required for cell motility, but not for phototaxis.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
255583634	280	conserved hypothetical protein [Ricinus	0.945	0.625	0.700	2e-60
224071571	275	predicted protein [Populus trichocarpa]	0.918	0.618	0.672	4e-58
297741150	261	unnamed protein product [Vitis vinifera]	0.843	0.597	0.683	4e-54
449459702	279	PREDICTED: thylakoid lumenal protein At1	0.935	0.620	0.644	6e-54
359474379	596	PREDICTED: uncharacterized protein LOC10	0.843	0.261	0.683	9e-54
388505216	273	unknown [Lotus japonicus]	0.859	0.582	0.644	5e-50
255638223	199	unknown [Glycine max]	0.859	0.798	0.659	1e-48
356540500	260	PREDICTED: thylakoid lumenal protein At1	0.837	0.596	0.632	6e-47
357481963	262	Thylakoid lumenal protein [Medicago trun	0.848	0.599	0.610	2e-46
297741151	201	unnamed protein product [Vitis vinifera]	0.859	0.791	0.612	5e-46

>gi|255583634|ref|XP_002532572.1| conserved hypothetical protein [Ricinus communis] gi|223527699|gb|EEF29806.1| conserved hypothetical protein [Ricinus communis]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/177 (70%), Positives = 139/177 (78%), Gaps = 2/177 (1%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MA +SISPLSIKS+N   SSS+ PY L + SKP  + CQ++  TE + +  DCS  +   
Sbjct: 1   MAFTSISPLSIKSVNISPSSSRSPYHLPSQSKPFHILCQLA--TEREDRILDCSTTRYKV 58

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
            ++K KNWR  VSTALAAA   +    + A ADLNK+EAE RGEFGIGSAAQFGSADLRK
Sbjct: 59  HHSKPKNWRTLVSTALAAAAAVNLGFGLPAAADLNKFEAELRGEFGIGSAAQFGSADLRK 118

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
           AVHV ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMV
Sbjct: 119 AVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMV 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071571|ref|XP_002303521.1| predicted protein [Populus trichocarpa] gi|222840953|gb|EEE78500.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 136/177 (76%), Gaps = 7/177 (3%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MA +SIS +SIKS N  +     P+++ +LSKP  +A Q+   TE   QF DCS N    
Sbjct: 1   MAFTSISSMSIKSPNIST-----PHRILSLSKPFRIAYQL--DTERGNQFADCSKNGYEV 53

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
             AK KNW   VST L AA ++  S N+ A+ADLN++EAETRGEFGIGSAAQFGSADLRK
Sbjct: 54  ETAKAKNWARVVSTTLVAAAISFSSCNLPAVADLNRFEAETRGEFGIGSAAQFGSADLRK 113

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
           AVH+ ENFRRANFT+ADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMV
Sbjct: 114 AVHLNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMV 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741150|emb|CBI31881.3| unnamed protein product [Vitis vinifera]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 121/177 (68%), Positives = 131/177 (74%), Gaps = 21/177 (11%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MALSS+SPL I         SK P  L + SKP  V C+I  +    G +  C  N    
Sbjct: 1   MALSSVSPLYI---------SKSPNHLQSPSKPFTVVCRIELQR---GNY--CRAN---- 42

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
             A+ K W+  VSTALAAAVV + S  + A+ADLNKYEAETRGEFGIGSAAQFGSADLRK
Sbjct: 43  --AESKKWQRLVSTALAAAVV-TLSPVMPAVADLNKYEAETRGEFGIGSAAQFGSADLRK 99

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
           AVHV ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMV
Sbjct: 100 AVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMV 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459702|ref|XP_004147585.1| PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Cucumis sativus] gi|449520611|ref|XP_004167327.1| PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Cucumis sativus]

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 114/177 (64%), Positives = 132/177 (74%), Gaps = 4/177 (2%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MALSSIS LS+K L   SS S+ P  L    K + +  QI+ + +   Q  DCS  +  G
Sbjct: 1   MALSSISSLSVKCLPLNSSKSRHPCSLQT-RKQISMVSQINPQKD---QTQDCSERKHIG 56

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
              + K W+  VSTALAAA V   SS + ++A+LNKYEA+TRGEFGIGSAAQ+GSADLRK
Sbjct: 57  KITEPKRWQKLVSTALAAAAVIGFSSGMPSVAELNKYEADTRGEFGIGSAAQYGSADLRK 116

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
           AVH+ ENFRRANFTSADMRESDFSG  FNGAYLEKAVAYK NF+GADLSDTLMDRMV
Sbjct: 117 AVHINENFRRANFTSADMRESDFSGCTFNGAYLEKAVAYKTNFSGADLSDTLMDRMV 173

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474379|ref|XP_002265958.2| PREDICTED: uncharacterized protein LOC100250522 isoform 2 [Vitis vinifera]

 Score =  214 bits (546), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 121/177 (68%), Positives = 131/177 (74%), Gaps = 21/177 (11%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MALSS+SPL I         SK P  L + SKP  V C+I  +    G +  C  N    
Sbjct: 336 MALSSVSPLYI---------SKSPNHLQSPSKPFTVVCRIELQR---GNY--CRAN---- 377

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
             A+ K W+  VSTALAAAVV + S  + A+ADLNKYEAETRGEFGIGSAAQFGSADLRK
Sbjct: 378 --AESKKWQRLVSTALAAAVV-TLSPVMPAVADLNKYEAETRGEFGIGSAAQFGSADLRK 434

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
           AVHV ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMV
Sbjct: 435 AVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMV 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505216|gb|AFK40674.1| unknown [Lotus japonicus]

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 118/183 (64%), Positives = 133/183 (72%), Gaps = 24/183 (13%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQL------HALSKPLWVACQISSKTESDGQFPDCS 54
           MAL+S+SPLSI ++N    SS+   +L      H  S P+ V CQ++S  +     P  S
Sbjct: 2   MALNSLSPLSI-NINSLHVSSRPTSELSNSLHFHPKSSPI-VLCQMNSNRD----HPQES 55

Query: 55  NNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFG 114
                      K W   VS  LAAAV+A  SS++SALADLNK+EAE RGEFGIGSAAQFG
Sbjct: 56  -----------KKWGKLVSATLAAAVIA-FSSDMSALADLNKFEAEIRGEFGIGSAAQFG 103

Query: 115 SADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD 174
           SADLRKAVHV ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMD
Sbjct: 104 SADLRKAVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMD 163

Query: 175 RMV 177
           RMV
Sbjct: 164 RMV 166

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638223|gb|ACU19425.1| unknown [Glycine max]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/176 (65%), Positives = 134/176 (76%), Gaps = 17/176 (9%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MAL+S+SPLSI SL+  SSS+      H+ S P+ V CQI+S  +         + Q + 
Sbjct: 2   MALNSLSPLSINSLHVSSSSTSKISHSHSKSFPV-VVCQINSNRD---------HRQEST 51

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
            + K+      VS  LAAAV+A  SS++SALADLNK+EAE RGEFGIGSAAQFGSADLRK
Sbjct: 52  KWGKV------VSATLAAAVIA-FSSDMSALADLNKFEAEMRGEFGIGSAAQFGSADLRK 104

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRM 176
           AVHV ENFRRANFT+ADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRM
Sbjct: 105 AVHVNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRM 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540500|ref|XP_003538726.1| PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Glycine max]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 112/177 (63%), Positives = 128/177 (72%), Gaps = 22/177 (12%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MAL+S+SPLSI SL+  SSS+      H+ S P+ V    ++++                
Sbjct: 1   MALNSLSPLSINSLHVSSSSTSKISHSHSKSFPVVVKSVANAES---------------- 44

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
                  W   VS  LAAAV+A  SS++SALADLNK+EAE RGEFGIGSAAQFGSADLRK
Sbjct: 45  -----TKWGKVVSATLAAAVIA-FSSDMSALADLNKFEAEMRGEFGIGSAAQFGSADLRK 98

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
           AVHV ENFRRANFT+ADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMV
Sbjct: 99  AVHVNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMV 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481963|ref|XP_003611267.1| Thylakoid lumenal protein [Medicago truncatula] gi|355512602|gb|AES94225.1| Thylakoid lumenal protein [Medicago truncatula]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 123/177 (69%), Gaps = 20/177 (11%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MAL+S +PLSI S +            +  S  +  + Q+  K   +   P  SN     
Sbjct: 1   MALNSFTPLSINSHH---------VSCYPSSSKVSKSSQVICKMSLNNDHPQESN----- 46

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
                KNW   VS  LAAAV+   SS++SALADLNK+EAE RGEFGIGSAAQFGSADL+K
Sbjct: 47  -----KNWGKLVSATLAAAVIV-FSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKK 100

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
            VHV ENFRRANFTSADMRESDFSGS FNGAY+EKAVA+KANFTGADLSDTLMDRMV
Sbjct: 101 TVHVNENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMV 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741151|emb|CBI31882.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/178 (61%), Positives = 119/178 (66%), Gaps = 19/178 (10%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MALSS+SPL I         SK P  L +LSKP  V C+I  + E         NN    
Sbjct: 1   MALSSVSPLYI---------SKSPNHLRSLSKPFTVVCRIERQRE---------NNWRGE 42

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
             A+ K W+  VSTALAAAVV + S  + A+ADLNKYE ETRGEFGIGSAAQFGSADLRK
Sbjct: 43  ANAESKKWQRLVSTALAAAVV-TLSPVMPAVADLNKYEVETRGEFGIGSAAQFGSADLRK 101

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVK 178
           AVHV ENFRRANFTSADMRESDFSGS FNG YLEKAVAYKA+ T A  S     R  K
Sbjct: 102 AVHVNENFRRANFTSADMRESDFSGSTFNGEYLEKAVAYKASLTDAQSSINPTARQYK 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2202033	280	AT1G12250 "AT1G12250" [Arabido	0.827	0.546	0.567	4.3e-38

TAIR|locus:2202033 AT1G12250 "AT1G12250" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 92/162 (56%), Positives = 108/162 (66%)

Query:    18 SSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQ--CAGPYAKLKNWRXXXXXX 75
             SS S+ PY  H   + L    Q+SS+  S+ +  D SN +  C    A+   W+      
Sbjct:    21 SSVSRSPY--H-FQRYLLRRLQLSSR--SNLEIKDSSNTREGCCSS-AESNTWKRILSAA 74

Query:    76 XXXXXXXXXXXXXXXLADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTS 135
                            +A+LN++EA+TRGEFGIGSAAQ+GSADL K VH  ENFRRANFTS
Sbjct:    75 MAAAVIASSSGVPA-MAELNRFEADTRGEFGIGSAAQYGSADLSKTVHSNENFRRANFTS 133

Query:   136 ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
             ADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMV
Sbjct:   134 ADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMV 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.127   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      185       152   0.00073  105 3  11 23  0.37    32
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  147 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.71u 0.13s 11.84t   Elapsed:  00:00:01
  Total cpu time:  11.71u 0.13s 11.84t   Elapsed:  00:00:01
  Start:  Fri May 10 02:08:32 2013   End:  Fri May 10 02:08:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H1Q1	TL225_ARATH	No assigned EC number	0.6111	0.9297	0.6142	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00030850	hypothetical protein (275 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_VII0722	photosystem II stability/assembly factor (394 aa)				•			•		0.423

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	5e-07
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	7e-07
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	2e-06
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	2e-05
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	3e-05
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	4e-05
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	5e-05
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	8e-05
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	1e-04
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	3e-04
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	0.002
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	0.002
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	0.002

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 19/67 (28%), Positives = 30/67 (44%)

Query: 105 FGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFT 164
               + A    ADL  A     N   AN + A++  ++ S +  +GA L  A    A+ +
Sbjct: 107 LSNATRANLSGADLSGANLSNANLTGANLSGANLNGANLSNANLSGADLSGADLSGADLS 166

Query: 165 GADLSDT 171
           GA+LS  
Sbjct: 167 GANLSGA 173

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 22/64 (34%), Positives = 31/64 (48%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           A    A+L  A     N   AN + AD+  +D SG+  +GA L  A    AN +GA+LS 
Sbjct: 128 ANLTGANLSGANLNGANLSNANLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSG 187

Query: 171 TLMD 174
             + 
Sbjct: 188 ADLR 191

Length = 238

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 42.8 bits (102), Expect = 2e-06
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           N   AN   AD+R +D SG+   GA L       AN +GA+LS 
Sbjct: 2   NLSGANLRGADLRGADLSGADLTGANLS-----GANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    A+L  A     N   A+ + AD+  +D SG+  +GA L  A    AN +GADL
Sbjct: 136 SGANLNGANLSNA-----NLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSGADL 190

Query: 169 SDT 171
            + 
Sbjct: 191 RNA 193

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           + A   +A+L  A     +   A+ + A++  +D  G+  +GA L  A    AN +GADL
Sbjct: 141 NGANLSNANLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSGADLRNANLSGADL 200

Query: 169 SDTLMDR 175
           S   +  
Sbjct: 201 SGADLTG 207

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMR-ESDFSGSKFNGAYLEKAVAYKANFTGAD 167
             A     DL  A     +   AN   AD+   +D SG+   GA L  A    AN +GA+
Sbjct: 47  ENANLSGLDLSGANLSGADLSNANLRGADLSKGADLSGADLEGANLRGANLSGANLSGAN 106

Query: 168 LSDTLMDRM 176
           LS+     +
Sbjct: 107 LSNATRANL 115

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 22/63 (34%), Positives = 30/63 (47%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    A+L  A     N   AN + AD+R ++ SG+  +GA L  A    AN  GA+L
Sbjct: 161 SGADLSGANLSGADLRGANLSGANLSGADLRNANLSGADLSGADLTGANLVNANLGGANL 220

Query: 169 SDT 171
              
Sbjct: 221 FGA 223

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 19/65 (29%), Positives = 29/65 (44%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    ADL  A     N   A+   A++  ++ SG+    A L  A    A+ TGA+L
Sbjct: 151 SGADLSGADLSGADLSGANLSGADLRGANLSGANLSGADLRNANLSGADLSGADLTGANL 210

Query: 169 SDTLM 173
            +  +
Sbjct: 211 VNANL 215

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 109 SAAQFGSADLRKA-VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 167
           S A   +A+LR A +    +   A+   A++R ++ SG+  +GA L  A   +AN +GAD
Sbjct: 62  SGADLSNANLRGADLSKGADLSGADLEGANLRGANLSGANLSGANLSNAT--RANLSGAD 119

Query: 168 LSDTLMDR 175
           LS   +  
Sbjct: 120 LSGANLSN 127

Length = 238

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 36.6 bits (86), Expect = 3e-04
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNG 150
           A    A+LR A     +   A+ T A++  ++ SG+  +G
Sbjct: 1   ANLSGANLRGADLRGADLSGADLTGANLSGANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171
           AD R       + +  NF++A ++  +FS  K              +FT ADL + 
Sbjct: 1   ADFRNCSFENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTEADLKNA 56

Length = 77

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 175
           +FR  +F + D++  +FS +            +  NF+  DL D     
Sbjct: 2   DFRNCSFENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTE 50

Length = 77

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 12/61 (19%), Positives = 22/61 (36%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
             F + DL+         +  NF++  +   +FS          +A    A F+  DL +
Sbjct: 6   CSFENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTEADLKNAKFSNCDLKN 65

Query: 171 T 171
            
Sbjct: 66  V 66

Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
PRK15196	350	secreted effector protein PipB2; Provisional	99.86
PRK09718	512	hypothetical protein; Validated	99.84
PRK15196	350	secreted effector protein PipB2; Provisional	99.83
PRK09718	512	hypothetical protein; Validated	99.8
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	99.77
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	99.73
PRK15197	291	secreted effector protein PipB; Provisional	99.71
COG1357	238	Pentapeptide repeats containing protein [Function	99.68
PRK15377	782	E3 ubiquitin-protein ligase SopA; Provisional	99.63
PRK15377	782	E3 ubiquitin-protein ligase SopA; Provisional	99.63
PF13599	78	Pentapeptide_4: Pentapeptide repeats (9 copies); P	99.32
PF13599	78	Pentapeptide_4: Pentapeptide repeats (9 copies); P	99.28

>PRK15196 secreted effector protein PipB2; Provisional

Probab=99.86  E-value=3.7e-23  Score=172.71  Aligned_cols=56  Identities=20%  Similarity=0.285  Sum_probs=22.8

Q ss_pred             ccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEc
Q 029950          109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFT  164 (185)
Q Consensus       109 ~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~  164 (185)
                      .+++|.+++|++++|.+|+|.+++|.+|+|++++|.+++|.+++|.+++|.+++|.
T Consensus       245 ~~anL~gAnL~~a~f~~a~L~~anfs~A~L~~a~f~~a~L~~A~f~~A~L~~Adf~  300 (350)
T PRK15196        245 IECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFI  300 (350)
T ss_pred             ccccccccccccccccccccccCccccccccccccccceecccccceeeccccEee
Confidence            33444444444444444444444444444444433333333333333333333333

>PRK09718 hypothetical protein; Validated

Probab=99.84  E-value=4.6e-22  Score=168.49  Aligned_cols=142  Identities=11%  Similarity=0.086  Sum_probs=101.6

Q ss_pred             cccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccccccCc
Q 029950           25 YQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGE  104 (185)
Q Consensus        25 ~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (185)
                      +.+.+|++|+|.+|+|++++|.+++|.+|.|+.+.   +..+.|.++.+.++             .+..+.+.++.|.+|
T Consensus        92 fs~ldFegCdFsgCdFS~csFs~~dLqDV~FEcA~---Lg~CNFsgAdLsgA-------------~FarA~L~rvsFinC  155 (512)
T PRK09718         92 LSDLDLTSCHFKGDVISKVSFLSSNLQHVTFECKE---IGDCNFTTAIVDNV-------------IFKCRRLHNVIFIKA  155 (512)
T ss_pred             eccCEEcccEecCCEEeeceecCCEEEeEEEeccc---cCccccccCCCCCC-------------ccccceecceEEEec
Confidence            56666666666666666666666666666665555   44444444444333             255666677777777


Q ss_pred             ccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCcee---eCcEEcCCccCCCcccCeEeeee
Q 029950          105 FGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVA---YKANFTGADLSDTLMDRMVKLVT  181 (185)
Q Consensus       105 ~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l---~~a~l~~a~l~~a~~~~~~l~~~  181 (185)
                      ++  .|++|+++.|+++.|.+|.|.+++|.+++|+++.|.+|+|.+++|.+++|   +++.|.+++|++++|.++.|+++
T Consensus       156 KL--sGAdFSgA~Lk~V~FsdCnL~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDLt~AdF~qT~LkgV  233 (512)
T PRK09718        156 SG--EYVDFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFDHVRISTG  233 (512)
T ss_pred             cc--cCcccccCccCCcEEeeeEecccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCCCCCCcCCCcCCCc
Confidence            77  77888888888888888888888888888888888888888888888887   67888888888888888777777


Q ss_pred             ecC
Q 029950          182 TTN  184 (185)
Q Consensus       182 ~~~  184 (185)
                      +..
T Consensus       234 DFS  236 (512)
T PRK09718        234 NFK  236 (512)
T ss_pred             ccc
Confidence            653

>PRK15196 secreted effector protein PipB2; Provisional

Probab=99.83  E-value=1.5e-21  Score=162.99  Aligned_cols=57  Identities=16%  Similarity=0.147  Sum_probs=21.2

Q ss_pred             ceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCc
Q 029950          111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD  167 (185)
Q Consensus       111 ~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~  167 (185)
                      ++|.+++|.+++|.+++|++++|.+++|++++|.+++|.+++|.+++|.+++|.+++
T Consensus       257 a~f~~a~L~~anfs~A~L~~a~f~~a~L~~A~f~~A~L~~Adf~~a~L~gadfs~A~  313 (350)
T PRK15196        257 TNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEAN  313 (350)
T ss_pred             ccccccccccCccccccccccccccceecccccceeeccccEeeCCEecCCCCCCCc
Confidence            333333333333333333333333333333333333333333333333333333333

>PRK09718 hypothetical protein; Validated

Probab=99.80  E-value=1.3e-20  Score=159.79  Aligned_cols=146  Identities=10%  Similarity=0.099  Sum_probs=76.9

Q ss_pred             CCCCCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccc
Q 029950           20 SSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEA   99 (185)
Q Consensus        20 ~~~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (185)
                      +.+..|++++|++|.|.+|+|.++.|.++.|.+|.|.+++   +.+++|.++.+..+.|..+...   ...|.++.+.++
T Consensus        97 FegCdFsgCdFS~csFs~~dLqDV~FEcA~Lg~CNFsgAd---LsgA~FarA~L~rvsFinCKLs---GAdFSgA~Lk~V  170 (512)
T PRK09718         97 LTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAI---VDNVIFKCRRLHNVIFIKASGE---YVDFSKNILDTV  170 (512)
T ss_pred             EcccEecCCEEeeceecCCEEEeEEEeccccCccccccCC---CCCCccccceecceEEEecccc---CcccccCccCCc
Confidence            3444455555555555555555555555555555555555   4444455555544444433311   222444444444


Q ss_pred             cccCcccccccceeccceecccccccccccCceecccee---cCeeecCceecCceeeCceeeCcEEcCCccCCCcc
Q 029950          100 ETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADM---RESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM  173 (185)
Q Consensus       100 ~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l---~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~  173 (185)
                      .+.++.+  .+++|.+++|+++.|.+|+|.++.|.+|+|   +++.|.+++|.+|+|.+++|+++||+.|++.+.++
T Consensus       171 ~FsdCnL--~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDLt~AdF~qT~LkgVDFSdC~Le~~~~  245 (512)
T PRK09718        171 DFSQSQL--THSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFDHVRISTGNFKDCITEQLEL  245 (512)
T ss_pred             EEeeeEe--cccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCCCCCCcCCCcCCCcccccccccceEE
Confidence            5555555  555566666666666666666666666665   45555555555555555555555555555555443

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=99.77  E-value=1.6e-19  Score=139.31  Aligned_cols=135  Identities=13%  Similarity=0.123  Sum_probs=86.4

Q ss_pred             ecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccccccCcccccccceec
Q 029950           35 WVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFG  114 (185)
Q Consensus        35 f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  114 (185)
                      |.-+.++++.|+++++.-|.|+.+|   +++..+.-+.+.++.+.-..        ..++.+.+++|.....  ..+++.
T Consensus       153 FkyA~ls~c~lshtNL~ca~lerAD---l~gsil~cA~L~~v~~lcaN--------~eGA~L~gcNfedps~--~kaNLe  219 (302)
T KOG1665|consen  153 FKYANLSNCNLSHTNLQCAKLERAD---LEGSILHCAILREVEMLCAN--------AEGASLKGCNFEDPSG--LKANLE  219 (302)
T ss_pred             ceehhhccccccccchhhhhhcccc---cccchhhhhhhhhhhheecc--------cccccccCcCCCCccc--hhcccc
Confidence            3333334444444444444444444   44444444444444443221        3334444444444333  567888


Q ss_pred             cceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeeee
Q 029950          115 SADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTT  182 (185)
Q Consensus       115 ~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~~  182 (185)
                      +++|.+++|.++++++++++-|+|+++++.+++|.+|++.+++|.++||+|+||..|.+++++++++-
T Consensus       220 ganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQeAnLRg~Nlk~A~  287 (302)
T KOG1665|consen  220 GANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADLQEANLRGVNLKEAH  287 (302)
T ss_pred             ccccccccccccccccceeEeccccccccccCccccccccCCccccCCCCCcchhHhhcccCchhhHH
Confidence            88888888888888888888888888888888888888888888888888888888888888887763

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=99.73  E-value=7.3e-19  Score=135.73  Aligned_cols=147  Identities=12%  Similarity=0.088  Sum_probs=93.5

Q ss_pred             CCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhcccccccccc
Q 029950           23 GPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETR  102 (185)
Q Consensus        23 ~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (185)
                      -.|+|.+|.+..+..-+|...+|.-+.+.+|.|.+..   +..+.+.++.+.+..+.-..        +..+.+.-++.+
T Consensus       131 lRfqGvNlSGaDLskLDlr~inFkyA~ls~c~lshtN---L~ca~lerADl~gsil~cA~--------L~~v~~lcaN~e  199 (302)
T KOG1665|consen  131 LRFQGVNLSGADLSKLDLRLINFKYANLSNCNLSHTN---LQCAKLERADLEGSILHCAI--------LREVEMLCANAE  199 (302)
T ss_pred             eeeecccccccchhhcccccccceehhhccccccccc---hhhhhhcccccccchhhhhh--------hhhhhheecccc
Confidence            3466666666666666666666666666666666666   55555665555555444322        444444445555


Q ss_pred             Ccccccccceecc-----ceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeE
Q 029950          103 GEFGIGSAAQFGS-----ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV  177 (185)
Q Consensus       103 ~~~~~~~~~~f~~-----a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~  177 (185)
                      ++.+  .+++|..     ++|+++.+.+|+|-++++++++|+.|++.++++.++++++|+|.|++|+.|||+++++..+.
T Consensus       200 GA~L--~gcNfedps~~kaNLeganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQeAn  277 (302)
T KOG1665|consen  200 GASL--KGCNFEDPSGLKANLEGANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADLQEAN  277 (302)
T ss_pred             cccc--cCcCCCCccchhccccccccccccccccccccceeEeccccccccccCccccccccCCccccCCCCCcchhHhh
Confidence            5555  5566666     66666666666666666666777777777777777777777777777777777777777777


Q ss_pred             eeeee
Q 029950          178 KLVTT  182 (185)
Q Consensus       178 l~~~~  182 (185)
                      |+++.
T Consensus       278 LRg~N  282 (302)
T KOG1665|consen  278 LRGVN  282 (302)
T ss_pred             cccCc
Confidence            76653

>PRK15197 secreted effector protein PipB; Provisional

Probab=99.71  E-value=4.5e-18  Score=138.22  Aligned_cols=35  Identities=11%  Similarity=0.133  Sum_probs=12.8

Q ss_pred             cccccccCceecceeccCCCCCCcccCCcccccCC
Q 029950           25 YQLHALSKPLWVACQISSKTESDGQFPDCSNNQCA   59 (185)
Q Consensus        25 ~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~   59 (185)
                      +.+++|.+..|.+.+|.+++|.+++|.++.|.+|+
T Consensus       156 L~g~DLs~adL~gadLsgadLs~A~F~gAnL~~a~  190 (291)
T PRK15197        156 LRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVN  190 (291)
T ss_pred             CCCCCCCCCCCCCCcCCCCcccCccccccCcCCcc
Confidence            33333333333333333333333333333333333

>COG1357 Pentapeptide repeats containing protein [Function unknown]

Probab=99.68  E-value=1.1e-17  Score=132.48  Aligned_cols=35  Identities=9%  Similarity=-0.003  Sum_probs=14.9

Q ss_pred             cccccccCceecceeccCCCCC-CcccCCcccccCC
Q 029950           25 YQLHALSKPLWVACQISSKTES-DGQFPDCSNNQCA   59 (185)
Q Consensus        25 ~~~a~l~~~~f~~c~~~~~~f~-~a~l~~~~F~~c~   59 (185)
                      +.++.+.++.|..++|.+++|. +++|.++.|.++.
T Consensus        56 ~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~   91 (238)
T COG1357          56 LSGANLSGADLSNANLRGADLSKGADLSGADLEGAN   91 (238)
T ss_pred             ccccccccchhhhcccccchhccCCCCCCCcccccc
Confidence            4444444444444444444444 4444444444444

>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional

Probab=99.63  E-value=2.1e-16  Score=140.48  Aligned_cols=43  Identities=7%  Similarity=0.019  Sum_probs=24.8

Q ss_pred             ccCCCCCCcccccccCceecceeccCCCCCCcccCCcccccCC
Q 029950           17 CSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCA   59 (185)
Q Consensus        17 ~~~~~~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~   59 (185)
                      .+..+.++|+++.++++.|.+|+|.+++|.+++|.++.|.++.
T Consensus       174 a~~Ls~Adl~~A~Le~vdFsg~DLSGADFsg~DLSgAnFsgA~  216 (782)
T PRK15377        174 AKKLTDARLRQEAGEELTYADRDFSNADFRNINFSKINPSGFM  216 (782)
T ss_pred             ccccccCccccCcCccCCcCCCcCCCCCCCCCcccCCcchhhc
Confidence            3445555556666666666666666666655555555555555

>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional

Probab=99.63  E-value=2.6e-16  Score=139.85  Aligned_cols=29  Identities=10%  Similarity=0.007  Sum_probs=13.0

Q ss_pred             cCceecceeccCCCCCCcccCCcccccCC
Q 029950           31 SKPLWVACQISSKTESDGQFPDCSNNQCA   59 (185)
Q Consensus        31 ~~~~f~~c~~~~~~f~~a~l~~~~F~~c~   59 (185)
                      .++.|.+..+++++|.+++|.+++|.+|+
T Consensus       178 s~Adl~~A~Le~vdFsg~DLSGADFsg~D  206 (782)
T PRK15377        178 TDARLRQEAGEELTYADRDFSNADFRNIN  206 (782)
T ss_pred             ccCccccCcCccCCcCCCcCCCCCCCCCc
Confidence            33344444444444444444444444444

>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A

Probab=99.32  E-value=3.2e-12  Score=84.37  Aligned_cols=71  Identities=24%  Similarity=0.394  Sum_probs=34.7

Q ss_pred             ccccCcccccccceeccceecccccccccc-cCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCc
Q 029950           99 AETRGEFGIGSAAQFGSADLRKAVHVKENF-RRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL  172 (185)
Q Consensus        99 ~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l-~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~  172 (185)
                      +.+.++.+  .+++|.++.++++.|.+|+| .++.|.++.|.++.|.+++|.++.|.+++|.+++|++ +|.+++
T Consensus         6 ~~f~~~~l--~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~-~l~~~~   77 (78)
T PF13599_consen    6 CSFSGCNL--SGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNCDFSG-NLKGCN   77 (78)
T ss_dssp             EEEESCBC--TTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTEEETS-BCTTCB
T ss_pred             EEEECCCC--CCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCCEeEe-EcCCCc
Confidence            33444444  44555555555555555554 5555555555555555555555555555555555544 444443

...

>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A

Probab=99.28  E-value=2.8e-12  Score=84.63  Aligned_cols=73  Identities=19%  Similarity=0.360  Sum_probs=58.3

Q ss_pred             ccceeccceecccccccccccCceecccee-cCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeeee
Q 029950          109 SAAQFGSADLRKAVHVKENFRRANFTSADM-RESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTT  182 (185)
Q Consensus       109 ~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l-~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~~  182 (185)
                      .++.|.+++|.++.|.++.++++.|.+++| .++.|.++.|.+++|.++++++++|.+++|.++.|++ +|+++.
T Consensus         4 ~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~-~l~~~~   77 (78)
T PF13599_consen    4 ENCSFSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNCDFSG-NLKGCN   77 (78)
T ss_dssp             ESEEEESCBCTTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTEEETS-BCTTCB
T ss_pred             EEEEEECCCCCCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCCEeEe-EcCCCc
Confidence            567778888888888888888888888887 8888888888888888888888888888888888876 776653

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	3e-15
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	4e-09
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	2e-08
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	7e-06
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	6e-05
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	3e-13
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	3e-10
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	1e-09
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	5e-08
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	5e-07
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	1e-06
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	3e-04
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-10
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-09
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-09
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	4e-09
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	4e-09
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	6e-09
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	7e-09
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	8e-09
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-08
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-08
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	8e-08
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-07
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-06
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-04
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	2e-10
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	9e-10
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	1e-09
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	5e-09
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	6e-09
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	7e-09
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	1e-08
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	1e-08
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	2e-08
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	2e-08
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	2e-08
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	6e-08
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	1e-07
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	3e-06
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	4e-05
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	8e-04
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	7e-10
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	8e-10
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	1e-08
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	1e-08
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	4e-08
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	6e-08
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	1e-07
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	5e-07
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-09
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	1e-07
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	1e-07
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	1e-07
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	5e-07
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-06
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-06
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-05
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	6e-05
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	1e-04
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-09
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	4e-09
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	9e-09
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-08
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-08
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	3e-08
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	3e-08
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	4e-08
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	5e-08
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	5e-08
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	9e-08
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	9e-08
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	6e-07
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	4e-04
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	3e-09
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	5e-09
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	5e-09
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	7e-09
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	8e-09
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-08
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-08
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	2e-08
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	3e-08
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	4e-08
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	5e-08
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-07
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-07
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-07
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	5e-07
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-04
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	8e-04
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	5e-09
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	2e-08
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	3e-07
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	2e-06
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	2e-06
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	3e-06
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	5e-04
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	6e-09
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	7e-09
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	8e-08
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	1e-06
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	8e-05
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	9e-05
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	3e-04
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	7e-04
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	1e-08
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	2e-08
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	3e-08
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	2e-07
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	2e-05
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	1e-08
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	2e-08
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	3e-08
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	4e-08
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	7e-08
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	1e-07
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	7e-07
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	6e-06
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	9e-06
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	1e-05
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	1e-04

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 68.7 bits (169), Expect = 3e-15
 Identities = 22/84 (26%), Positives = 37/84 (44%)

Query: 92  ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA 151
            DL   + +       GS+A +    L       ++   A FT+AD+ +S+FS +   GA
Sbjct: 33  PDLGTDDDDKAMAMVTGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGA 92

Query: 152 YLEKAVAYKANFTGADLSDTLMDR 175
               +    A+  GADL++ L   
Sbjct: 93  VFNGSALIGADLHGADLTNGLAYL 116

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANF----- 163
             A F  + L  A     +   A+ T+     + F G+    A L +A+  +  F     
Sbjct: 90  RGAVFNGSALIGA-----DLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKI 144

Query: 164 TGADLSDTLMDR 175
           TGAD S  ++D 
Sbjct: 145 TGADFSLAVLDV 156

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           A    ADL             +F  AD+  +  + +       + A    A+F+ A L  
Sbjct: 102 ADLHGADLTNG-----LAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDV 156

Query: 171 TLMDRMVKLVTTTNS 185
             +D++       N 
Sbjct: 157 YEVDKLCDRADGVNP 171

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 6/64 (9%)

Query: 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 167
           GS  +  +A   +      +    +    D  +   +    + A  E       +F+G  
Sbjct: 15  GSGMKETAAKFERQ-----HMDSPDL-GTDDDDKAMAMVTGSSASYEDVKLIGEDFSGKS 68

Query: 168 LSDT 171
           L+  
Sbjct: 69  LTYA 72

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 7/67 (10%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAY-------KA 161
               F  ADL  AV  +    R  F  A +  +DFS +  +   ++K             
Sbjct: 115 YLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTG 174

Query: 162 NFTGADL 168
             T   L
Sbjct: 175 VSTRESL 181

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 62.9 bits (154), Expect = 3e-13
 Identities = 15/67 (22%), Positives = 26/67 (38%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                   DL       +   R +F ++ +R+++F G+K  GA    A    A+ + ADL
Sbjct: 9   GQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADL 68

Query: 169 SDTLMDR 175
                  
Sbjct: 69  RGADFSL 75

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 55.2 bits (134), Expect = 3e-10
 Identities = 17/62 (27%), Positives = 25/62 (40%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
               +G    R      ++F        D + S    + F GA L  A  + A+ TGADL
Sbjct: 4   GGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADL 63

Query: 169 SD 170
           S+
Sbjct: 64  SE 65

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 53.3 bits (129), Expect = 1e-09
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
               F ++ LR+A     NF+ A    A   ++D +G+  + A L  A    AN T  +L
Sbjct: 29  IRQDFKTSILRQA-----NFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNL 83

Query: 169 SD 170
           ++
Sbjct: 84  TN 85

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 49.0 bits (118), Expect = 5e-08
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171
           A           + +      D+   DFSG        + ++  +ANF GA L   
Sbjct: 1   AFKGGG-----PYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGA 51

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 46.3 bits (111), Expect = 5e-07
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAV---AY-------- 159
           A F  A L  A     +   A+ + AD+R +DFS +      L  A    A         
Sbjct: 41  ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGNTSFK 100

Query: 160 KANFTGADLSDTLMDR 175
            +N TGAD +D  +  
Sbjct: 101 GSNITGADFTDVPLRD 116

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNG-AYLEKAVAYKANFTGADLS 169
           A    ADLR A     +F  AN T  ++  ++  G+   G    + +    A+FT   L 
Sbjct: 61  ADLSEADLRGA-----DFSLANVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLR 115

Query: 170 DTLMDRMVKLVTTTN 184
           D     + K+    N
Sbjct: 116 DDQRVYLCKVADGVN 130

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 17/74 (22%), Positives = 22/74 (29%), Gaps = 18/74 (24%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMR-ESDFSGSKFNGAYLEKAV---------- 157
             A F  A++ K      N   AN   A M   + F GS   GA                
Sbjct: 69  RGADFSLANVTKV-----NLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLC 123

Query: 158 --AYKANFTGADLS 169
             A   N T  + +
Sbjct: 124 KVADGVNATTGNAT 137

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 56.7 bits (138), Expect = 1e-10
 Identities = 10/59 (16%), Positives = 17/59 (28%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
             F   +L ++ H    FR   F    +  S F+     G+               D +
Sbjct: 35  CDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFT 93

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 53.6 bits (130), Expect = 2e-09
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           +  +     L        + R+     AD+  +  +G++ + A L  A      +  A L
Sbjct: 108 TGCRLRETSLVDT-----DLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASL 162

Query: 169 SDTLMDR 175
               +D 
Sbjct: 163 VGARVDV 169

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 5/61 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           + +Q   +  R        F R     +   +    GS F    L        +FT A L
Sbjct: 43  AESQHRGSAFRNC-----TFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVL 97

Query: 169 S 169
            
Sbjct: 98  G 98

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 12/63 (19%), Positives = 24/63 (38%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           +   F   DL +    +  F   +F+  ++ ES   GS F     E+   + + F    +
Sbjct: 13  TGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSM 72

Query: 169 SDT 171
             +
Sbjct: 73  LGS 75

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 15/61 (24%), Positives = 22/61 (36%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           + F +  LR       +F  A     D+R  + +G +     L      K    GADLS 
Sbjct: 75  SVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSG 134

Query: 171 T 171
            
Sbjct: 135 A 135

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 52.1 bits (126), Expect = 6e-09
 Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 5/62 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           + A  G  DLR       N          + ++D       GA L  A    A    ADL
Sbjct: 93  TLAVLGGNDLRGL-----NLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADL 147

Query: 169 SD 170
             
Sbjct: 148 RG 149

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 51.7 bits (125), Expect = 7e-09
 Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 5/62 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S      A   +      +F   N   +  R S F    F    L  +   + +  G+  
Sbjct: 23  SRLHTERAMFSEC-----DFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVF 77

Query: 169 SD 170
             
Sbjct: 78  VA 79

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 51.7 bits (125), Expect = 8e-09
 Identities = 12/61 (19%), Positives = 19/61 (31%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
             F    L  +   + +   + F +  +R        F  A L        N TG  L +
Sbjct: 55  CTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRE 114

Query: 171 T 171
           T
Sbjct: 115 T 115

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             + F    +  +      F         + + DF+ +   G  L              L
Sbjct: 63  WHSTFAQCSMLGS-----VFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSL 117

Query: 169 SDT 171
            DT
Sbjct: 118 VDT 120

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 50.5 bits (122), Expect = 2e-08
 Identities = 16/63 (25%), Positives = 20/63 (31%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                   D   AV    + R  N T   +RE+    +      L  A    A  TGA L
Sbjct: 83  RPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARL 142

Query: 169 SDT 171
            D 
Sbjct: 143 DDA 145

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 49.0 bits (118), Expect = 8e-08
 Identities = 8/63 (12%), Positives = 14/63 (22%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A F   D         N   +    +  R   F  +    +   +     + F    L
Sbjct: 28  ERAMFSECDFSGV-----NLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRL 82

Query: 169 SDT 171
              
Sbjct: 83  RPL 85

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 5/71 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                   DLRK        R A+ + A    +    +   GA ++  +   A+  GA +
Sbjct: 113 RETSLVDTDLRKC-----VLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARV 167

Query: 169 SDTLMDRMVKL 179
                      
Sbjct: 168 DVDQAVAFAAA 178

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 6/60 (10%), Positives = 15/60 (25%), Gaps = 5/60 (8%)

Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 175
                       F   +F   D+       + F+          ++   G+   +   +R
Sbjct: 5   QQWVDC-----EFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFER 59

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 7/43 (16%), Positives = 20/43 (46%)

Query: 129 RRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171
               +   +    DF     +  + E+A+  + +F+G +L+++
Sbjct: 3   HMQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAES 45

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A F S DL  A     +FR ++    ++R     G+ F GA     +  +  F  A +
Sbjct: 65  KDAIFKSCDLSMA-----DFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYI 119

Query: 169 SDT 171
           ++T
Sbjct: 120 TNT 122

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 54.8 bits (133), Expect = 9e-10
 Identities = 16/61 (26%), Positives = 24/61 (39%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
                A+  K V  K       +  A +  + FSGS  +G          ANFT  DL++
Sbjct: 122 TNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTN 181

Query: 171 T 171
           +
Sbjct: 182 S 182

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 10/62 (16%), Positives = 18/62 (29%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
               F  A L+ A+    +   A+F ++     +    +  GA    A       T    
Sbjct: 55  KGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWF 114

Query: 169 SD 170
             
Sbjct: 115 CS 116

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 52.8 bits (128), Expect = 5e-09
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A F ++            R      AD R + F        +   A     N + A+ 
Sbjct: 75  SMADFRNSSALGI-----EIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANF 129

Query: 169 SDTLMDR 175
           S  ++++
Sbjct: 130 SKVVLEK 136

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 52.5 bits (127), Expect = 6e-09
 Identities = 11/63 (17%), Positives = 19/63 (30%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A F +    +           N + A+  +      +        A    A F+G+DL
Sbjct: 100 RGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDL 159

Query: 169 SDT 171
           S  
Sbjct: 160 SGG 162

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 52.1 bits (126), Expect = 7e-09
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S       +L +       +  A    A    SD SG +F+    E A     + T ++L
Sbjct: 130 SKVVLEKCELWEN-----RWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNSEL 184

Query: 169 SDT 171
            D 
Sbjct: 185 GDL 187

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                   +  +A       + A F S D+  +DF  S   G  +    A  A+F GA  
Sbjct: 50  DRESQKGCNFSRA-----MLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASF 104

Query: 169 SDTLMDRM 176
            + +  R 
Sbjct: 105 MNMITTRT 112

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 13/63 (20%), Positives = 22/63 (34%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A F  A     +  +  F  A  T+ ++  ++FS        L +     A   GA  
Sbjct: 95  QGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATF 154

Query: 169 SDT 171
           S +
Sbjct: 155 SGS 157

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 1/64 (1%)

Query: 109 SAAQFGSADLRKAVHVKE-NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 167
           S  +F           K  NF RA    A  +  D S + F  +             GAD
Sbjct: 39  SGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGAD 98

Query: 168 LSDT 171
               
Sbjct: 99  FRGA 102

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             AQ   A    +     +     F++ D   ++F+      + L        +  G  L
Sbjct: 145 IGAQVLGATFSGS-----DLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKL 199

Query: 169 SDT 171
            + 
Sbjct: 200 DNY 202

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
              ++  A +  A      F  ++ +  +    D+  + F    L  +     +  G DL
Sbjct: 140 WENRWIGAQVLGA-----TFSGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDL 194

Query: 169 SDTLMDR 175
               +D 
Sbjct: 195 QGVKLDN 201

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 49.8 bits (120), Expect = 6e-08
 Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 5/64 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A F  +DL         F   ++ +A+    D + S+     +               
Sbjct: 150 LGATFSGSDLSGG-----EFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQA 204

Query: 169 SDTL 172
           S  +
Sbjct: 205 SLLM 208

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           +     ++R         + A+F  A       + + F  AY+       ANF+   L  
Sbjct: 82  SSALGIEIRHC-----RAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEK 136

Query: 171 T 171
            
Sbjct: 137 C 137

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDF------SGSKFNGAYLEKAVAYKAN 162
              +F    +  +     +F  A+ +  +     F       G  F+ A L+ A+    +
Sbjct: 14  DRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCD 73

Query: 163 FTGADLSDT 171
            + AD  ++
Sbjct: 74  LSMADFRNS 82

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 16/72 (22%)

Query: 115 SADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYL-----------EKAVAYKANF 163
           +  L           R  FT   +  S F    F+GA L           ++      NF
Sbjct: 5   ALALVGE-----KIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNF 59

Query: 164 TGADLSDTLMDR 175
           + A L D +   
Sbjct: 60  SRAMLKDAIFKS 71

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 37.8 bits (89), Expect = 8e-04
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 131 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171
           ++  +  +       ++F G  +E +  +  +F+GADLS T
Sbjct: 2   SHM-ALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGT 41

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 54.8 bits (133), Expect = 7e-10
 Identities = 10/71 (14%), Positives = 19/71 (26%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
               F   +  +A   +  FR   F   ++       + F             N+T A  
Sbjct: 32  EDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQW 91

Query: 169 SDTLMDRMVKL 179
               M+  +  
Sbjct: 92  PSVKMEGALSF 102

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 54.8 bits (133), Expect = 8e-10
 Identities = 16/63 (25%), Positives = 24/63 (38%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           + + F    L     V+     ANFT AD  ++DF+ S   G+         A+F  A  
Sbjct: 108 NDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVN 167

Query: 169 SDT 171
              
Sbjct: 168 YHI 170

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 109 SAAQFGSADLRKAVHVKE-NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 167
           ++AQ+ S  +  A+  +      + F    +        + + A   +A    A+FT +D
Sbjct: 87  TSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSD 146

Query: 168 LSDTLMDR 175
           L  +    
Sbjct: 147 LKGSTFHN 154

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
              +   A+  +A     +   A+FT +D++ S F  +K  GA    AV Y  +    D+
Sbjct: 123 VECRIHDANFTEA-----DCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDI 177

Query: 169 SDTLMDR 175
                  
Sbjct: 178 KRARFSL 184

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 49.8 bits (120), Expect = 4e-08
 Identities = 13/63 (20%), Positives = 19/63 (30%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
            A    S D      V E+    +  S    +  F    F  A L +    +  F   +L
Sbjct: 2   PAKTLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNL 61

Query: 169 SDT 171
           S  
Sbjct: 62  SLI 64

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 49.4 bits (119), Expect = 6e-08
 Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
               F S D         +     F     R+ +F+ ++ N     +      N +   +
Sbjct: 12  CGESFVSEDRSGQ-----SLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISI 66

Query: 169 SDT 171
             T
Sbjct: 67  PQT 69

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 5/62 (8%)

Query: 110 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
           A  F    L  +      F         M E     + F  A  E A   +++  G+   
Sbjct: 99  ALSFERCILNDS-----LFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFH 153

Query: 170 DT 171
           +T
Sbjct: 154 NT 155

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 46.7 bits (112), Expect = 5e-07
 Identities = 10/62 (16%), Positives = 23/62 (37%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           A F  AD   A   + + + + F +  +  + F  +      +      +A F+  + + 
Sbjct: 130 ANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLPEAAS 189

Query: 171 TL 172
            L
Sbjct: 190 LL 191

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 110 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
                S  L+       + R A+F   D+  +D S S+  G  L    A   NF+ A  +
Sbjct: 50  RESEQSCLLQGC-----DLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFA 104

Query: 170 DT 171
           + 
Sbjct: 105 NQ 106

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
              +F   DL         F   NF+  D+ E  F    F     E++        G DL
Sbjct: 8   EGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQS----CLLQGCDL 63

Query: 169 SDT 171
            + 
Sbjct: 64  REA 66

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A F   DL  A     +  R+     ++R+    G  F+ A     +   + F  A L
Sbjct: 64  REASFLRCDLTMA-----DCSRSQCLGLELRDCQALGINFSRASFANQITVXSYFCEAHL 118

Query: 169 SDT 171
           +  
Sbjct: 119 TGN 121

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 7/65 (10%), Positives = 21/65 (32%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
            +      DLR+A  ++ +   A+ + +     +    +  G    +A         +  
Sbjct: 54  QSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXSYF 113

Query: 169 SDTLM 173
            +  +
Sbjct: 114 CEAHL 118

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 47.1 bits (112), Expect = 5e-07
 Identities = 10/53 (18%), Positives = 15/53 (28%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKL 179
            F    F   D+    F G +F G         +  F      D   ++   L
Sbjct: 6   CFEGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLL 58

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 10/66 (15%), Positives = 20/66 (30%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S  ++  A+L  A     +   + F   D    +  G       L      + N  G  +
Sbjct: 139 SGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQI 198

Query: 169 SDTLMD 174
           ++    
Sbjct: 199 NEDQQQ 204

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTS-ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
             F   DL +   V  +F          ++  D   + F    L  A   ++   G +L 
Sbjct: 30  CNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELR 89

Query: 170 DT 171
           D 
Sbjct: 90  DC 91

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 5/67 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           + A    +            R       +   + F+      +Y  +A     NF+ A+ 
Sbjct: 74  TMADCSRSQCLGL-----ELRDCQALGINFSRASFANQITVXSYFCEAHLTGNNFSYANF 128

Query: 169 SDTLMDR 175
              L+++
Sbjct: 129 EGCLLEQ 135

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S +Q    +LR            NF+ A         S F  A+L       ANF G  L
Sbjct: 79  SRSQCLGLELRDC-----QALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLL 133

Query: 169 SDT 171
              
Sbjct: 134 EQC 136

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 22/65 (33%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
             F  A     + V   F  A+ T  +   ++F G       L       AN  GA L+ 
Sbjct: 96  INFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAG 155

Query: 171 TLMDR 175
           + +  
Sbjct: 156 SDLSG 160

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A    A++R+A     +   AN  +AD+  +D + +  + A L +A   +AN TGA+L
Sbjct: 128 EQAILSHANIREA-----DLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANL 182

Query: 169 SDT 171
            D 
Sbjct: 183 EDA 185

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A    ADL  A         A    A + E+  + +    A LE+A+   AN   ADL
Sbjct: 88  RGANLSKADLSDA-----ILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADL 142

Query: 169 SDT 171
           S+ 
Sbjct: 143 SEA 145

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 51.7 bits (125), Expect = 9e-09
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A   +A L  A+  +    +AN  +A++ ++  S +    A L +A    A+ +GADL
Sbjct: 98  SDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADL 157

Query: 169 SDT 171
           +  
Sbjct: 158 AIA 160

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 18/63 (28%), Positives = 28/63 (44%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    A L +A   + N  RA+ + A +  +D  G+  + A L  A+   A   GA L
Sbjct: 53  SGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAIL 112

Query: 169 SDT 171
            + 
Sbjct: 113 DEA 115

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A    A+L  A     +   A+   AD+ +++   +    A L  A    AN  G  L
Sbjct: 138 READLSEANLEAA-----DLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGTIL 192

Query: 169 SDT 171
              
Sbjct: 193 EGG 195

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 50.5 bits (122), Expect = 3e-08
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A    A+L+ A     N  +A  + A++RE+D S +    A L  A    A+   A+L
Sbjct: 113 DEAVLNQANLKAA-----NLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANL 167

Query: 169 SDT 171
              
Sbjct: 168 HQA 170

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    ADL +A     N   A+ + AD+  +D   +  + A LE+A    AN   A+L
Sbjct: 133 SHANIREADLSEA-----NLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANL 187

Query: 169 SDTLMD 174
             T+++
Sbjct: 188 EGTILE 193

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A    ADL  A         A+   A++ ++D S +  + A LE A+  +A    A+L
Sbjct: 68  QQANLSRADLSGA-----TLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANL 122

Query: 169 S 169
            
Sbjct: 123 K 123

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 49.8 bits (120), Expect = 5e-08
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A    A+L +A     +   A    AD+R ++ S +  + A L+ A+   A    A L
Sbjct: 63  DEANLQQANLSRA-----DLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVL 117

Query: 169 SD 170
           + 
Sbjct: 118 NQ 119

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 49.8 bits (120), Expect = 5e-08
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    A L  A     + R AN + AD+ ++    +   GA L++AV  +AN   A+L
Sbjct: 73  SRADLSGATLNGA-----DLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANL 127

Query: 169 SD 170
             
Sbjct: 128 EQ 129

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 49.0 bits (118), Expect = 9e-08
 Identities = 18/61 (29%), Positives = 25/61 (40%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
             F   DLR AV    N   A    A + E++   +  + A L  A    A+  GA+LS 
Sbjct: 35  RDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSK 94

Query: 171 T 171
            
Sbjct: 95  A 95

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 49.0 bits (118), Expect = 9e-08
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A   +ADL  A     +   A+   A++ ++    +   GA LE A        G + 
Sbjct: 143 SEANLEAADLSGA-----DLAIADLHQANLHQAALERANLTGANLEDANLEGTILEGGNN 197

Query: 169 S 169
           +
Sbjct: 198 N 198

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 46.7 bits (112), Expect = 6e-07
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGA 166
            AA    ADL  A     +  +AN   A +  ++ +G+    A LE  +    N   A
Sbjct: 148 EAADLSGADLAIA-----DLHQANLHQAALERANLTGANLEDANLEGTILEGGNNNLA 200

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 4/43 (9%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
           +    + +    R S     K    Y     A + +F+  DL 
Sbjct: 5   HHHHHHSSGLVPRGSHMDVEKLRQLYA----AGERDFSIVDLR 43

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 54.0 bits (131), Expect = 3e-09
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           A   SA+L + +  + + R ++    D+     +G+  + A L  A  + AN  GA L  
Sbjct: 130 ANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCR 189

Query: 171 T 171
            
Sbjct: 190 A 190

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 53.3 bits (129), Expect = 5e-09
 Identities = 13/63 (20%), Positives = 23/63 (36%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                  ADL +A+  + +   A      + E++   +   GA L  A   +     ADL
Sbjct: 88  WGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADL 147

Query: 169 SDT 171
             +
Sbjct: 148 RPS 150

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 52.9 bits (128), Expect = 5e-09
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
              +   A+L KA     +   AN  SA++       +    +  ++        TGADL
Sbjct: 113 VKTRLEEANLIKA-----SLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADL 167

Query: 169 SD 170
           S 
Sbjct: 168 SY 169

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 52.5 bits (127), Expect = 7e-09
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A    ADL  A        +     A++ ++   G+  N A L + + ++A+   +  
Sbjct: 98  YRAILREADLTGA-----KLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSSN 152

Query: 169 SDT 171
             T
Sbjct: 153 QRT 155

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 52.5 bits (127), Expect = 8e-09
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           + A    ADLR+    K NF       AD+ E+   G   + A L +A+  +A+ TGA L
Sbjct: 53  TGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKL 112

Query: 169 SDT 171
             T
Sbjct: 113 VKT 115

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S      ADLR +     + +R +     +  +D S +    A L  A    A    A+ 
Sbjct: 138 SRCLLFQADLRPS-----SNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANF 192

Query: 169 SDTLM 173
             T+ 
Sbjct: 193 GRTIQ 197

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
              + G ++           R A+ + A +   D S +    A L +A    A      L
Sbjct: 63  RQTRLGKSNFSHT-----CLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRL 117

Query: 169 SDT 171
            + 
Sbjct: 118 EEA 120

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           A    A L+ A     +   AN  SA +R+++  G+   GA L+ A    A      + D
Sbjct: 203 ADLSGASLQGA-----DLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIHD 257

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 50.6 bits (122), Expect = 3e-08
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                G  + +       N +    T+A +  +D S +      L K+         ADL
Sbjct: 28  RHYAAGKRNFQHI-----NLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADL 82

Query: 169 SD 170
           S+
Sbjct: 83  SE 84

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 14/86 (16%)

Query: 86  SNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSG 145
           S+++    L  Y A             F   +L++          A+ T AD+  +D   
Sbjct: 19  SHMNVGEILRHYAA---------GKRNFQHINLQEI-----ELTNASLTGADLSYADLRQ 64

Query: 146 SKFNGAYLEKAVAYKANFTGADLSDT 171
           ++   +        +A+ + A L   
Sbjct: 65  TRLGKSNFSHTCLREADLSEAILWGI 90

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 50.2 bits (121), Expect = 5e-08
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           + A+     L +A     N  +A+   A++  ++ S      A L  +   + +     L
Sbjct: 108 TGAKLVKTRLEEA-----NLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLL 162

Query: 169 SDT 171
           +  
Sbjct: 163 TGA 165

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S      ADL +A          + + AD+  +    +   GA L K    +AN   A L
Sbjct: 73  SHTCLREADLSEA-----ILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASL 127

Query: 169 S 169
            
Sbjct: 128 C 128

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 109 SAAQFGSADLRKAVHVKE---NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG 165
             A+   A+  + +       +   A+   AD+  ++   +    A L+ A    A    
Sbjct: 183 DGAKLCRANFGRTIQWGNLAADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKD 242

Query: 166 ADLSDTLMDR 175
           A+L   +M  
Sbjct: 243 AELKGAIMPD 252

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 101 TRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK 160
            R  FG        +ADL  A     + + A+ + A++  +    +   GA L  A+   
Sbjct: 188 CRANFGRTIQWGNLAADLSGA-----SLQGADLSYANLESAILRKANLQGADLTGAILKD 242

Query: 161 ANFTGADLSDT 171
           A   GA + D 
Sbjct: 243 AELKGAIMPDG 253

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 47.5 bits (114), Expect = 5e-07
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 13/71 (18%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKA--------VAYK 160
             +     DL            A+ + AD+R +    +  +GA L +A            
Sbjct: 148 RPSSNQRTDLGYV-----LLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLA 202

Query: 161 ANFTGADLSDT 171
           A+ +GA L   
Sbjct: 203 ADLSGASLQGA 213

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 11/73 (15%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTS------ADMRESDFSGSKFNGAYLEKAVAYKAN 162
            ++                 R ++             + +F         L  A    A+
Sbjct: 2   GSSHHHHHHSSGL-----VPRGSHMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGAD 56

Query: 163 FTGADLSDTLMDR 175
            + ADL  T + +
Sbjct: 57  LSYADLRQTRLGK 69

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 118 LRKAVHVKENFRRANFTSADM------RESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           +  + H   +        + M      R        F    L++     A+ TGADLS 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSY 59

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 53.0 bits (127), Expect = 5e-09
 Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           A F    L         F   + ++      DFS  ++      +    + N TG + +D
Sbjct: 55  AVFDHLSLANG-----QFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFAD 109

Query: 171 TLMDRM 176
           + +   
Sbjct: 110 SYLXDC 115

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 8/63 (12%), Positives = 13/63 (20%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
               +   DL         FR A F    +    F+    +    E        +     
Sbjct: 33  ENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSF 92

Query: 169 SDT 171
              
Sbjct: 93  HRV 95

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 7/58 (12%), Positives = 15/58 (25%)

Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171
             A L   ++ + +       +   R++ F                   F   D S+ 
Sbjct: 28  DEAILENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNV 85

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 5/65 (7%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
               +            F   +F++ +     F    F    L        NF  + L D
Sbjct: 60  LSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLT-----GTNFADSYLXD 114

Query: 171 TLMDR 175
            L + 
Sbjct: 115 CLFED 119

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 12/65 (18%), Positives = 26/65 (40%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
            +F + D      +  +F R  F   ++  ++F+ S       E   A  A+F  A+ + 
Sbjct: 75  VRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNL 134

Query: 171 TLMDR 175
              ++
Sbjct: 135 VHFNQ 139

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 9/67 (13%), Positives = 13/67 (19%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           +  QF S D         +F    + S       F      G     +      F     
Sbjct: 63  ANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXA 122

Query: 169 SDTLMDR 175
                  
Sbjct: 123 DYASFRF 129

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 5/65 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S  ++ S    +       F R N T  +  +S      F     + A    ANF     
Sbjct: 83  SNVEWLSGSFHRV-----TFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHF 137

Query: 169 SDTLM 173
           + T +
Sbjct: 138 NQTRL 142

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 53.4 bits (128), Expect = 6e-09
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S       +L        NF  A     D+R SD S +       + ++  + NF  A+L
Sbjct: 40  SGLSLVGLNLSSV-----NFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANL 94

Query: 169 SDTLM 173
           S+ ++
Sbjct: 95  SNCII 99

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 53.4 bits (128), Expect = 7e-09
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 92  ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA 151
           A L+K  AE   +    SA + G     +      N+   + +   +   + S   F+GA
Sbjct: 5   ACLSK--AELTADLIWLSANRTGEESAEEL-----NYSGCDLSGLSLVGLNLSSVNFSGA 57

Query: 152 YLEKAVAYKANFTGADLSDT 171
            L+      ++ + A L + 
Sbjct: 58  VLDDTDLRMSDLSQAVLENC 77

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 50.3 bits (120), Expect = 8e-08
 Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                  +DL +A          +F ++ + E +F  +  +   + +A+   +NF+ ++L
Sbjct: 60  DDTDLRMSDLSQA-----VLENCSFKNSILNECNFCYANLSNCII-RALFENSNFSNSNL 113

Query: 169 SD 170
            +
Sbjct: 114 KN 115

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSK-------FNGAYLEKAV-AYK 160
           +   F  A+L   + ++  F  +NF++++++ + F GS         N A L  A+    
Sbjct: 85  NECNFCYANLSNCI-IRALFENSNFSNSNLKNASFKGSSYIQYPPILNEADLTGAIIIPG 143

Query: 161 ANFTGADLSDTLMDRMVKL 179
              +GA L D       K 
Sbjct: 144 MVLSGAILGDVKELFSEKS 162

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 8/81 (9%), Positives = 20/81 (24%), Gaps = 5/81 (6%)

Query: 109 SAAQFGSADLRKAVHVKE-NFRRANFTSADMRESDFSGSKFNGA----YLEKAVAYKANF 163
                  A L     +        N     +  SD   +  +         K++    N 
Sbjct: 142 PGMVLSGAILGDVKELFSEKSNTINLGGCYIDLSDIQENILSVLDNYTKSNKSILLTMNT 201

Query: 164 TGADLSDTLMDRMVKLVTTTN 184
           +    +   +    +L+   +
Sbjct: 202 SDDKYNHDKVRAAEELIKKIS 222

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 41.1 bits (96), Expect = 9e-05
 Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 2/68 (2%)

Query: 107 IGSAAQFGSADLRKAVHVKE-NFRRANFTSA-DMRESDFSGSKFNGAYLEKAVAYKANFT 164
           I        ADL  A+ +       A      ++     +     G Y++ +   +   +
Sbjct: 124 IQYPPILNEADLTGAIIIPGMVLSGAILGDVKELFSEKSNTINLGGCYIDLSDIQENILS 183

Query: 165 GADLSDTL 172
             D     
Sbjct: 184 VLDNYTKS 191

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 17/62 (27%)

Query: 127 NFRRANFTSAD-----------------MRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
           +  RA  + A+                   E ++SG   +G  L        NF+GA L 
Sbjct: 1   SQGRACLSKAELTADLIWLSANRTGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLD 60

Query: 170 DT 171
           DT
Sbjct: 61  DT 62

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 14/78 (17%)

Query: 111 AQFGSADLRKA-------VHVKENFRRANFTSADMRES-DFSG------SKFNGAYLEKA 156
           + F +++L+ A       +        A+ T A +      SG       +         
Sbjct: 106 SNFSNSNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDVKELFSEKSNTI 165

Query: 157 VAYKANFTGADLSDTLMD 174
                    +D+ + ++ 
Sbjct: 166 NLGGCYIDLSDIQENILS 183

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 52.8 bits (126), Expect = 1e-08
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S  +     ++       NF  + FT +D+    F   +F  + L   V     F+ +D+
Sbjct: 59  SFMERDGDIIKGF-----NFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDM 113

Query: 169 SD 170
           ++
Sbjct: 114 NE 115

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAV--AYKANFTGA 166
           + +        +       F  +  +      + FS S  N  +L+ ++    + +F   
Sbjct: 79  TYSDISHLHFDEC-----RFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDT 133

Query: 167 DLSDTLMDRMVKL 179
            L +TL+     L
Sbjct: 134 TLKNTLIRHKANL 146

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 5/62 (8%), Positives = 14/62 (22%), Gaps = 5/62 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                   +   +      F  ++ +     E  F+ S  +           ++     L
Sbjct: 64  DGDIIKGFNFSNS-----KFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFL 118

Query: 169 SD 170
             
Sbjct: 119 QY 120

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S ++F  +D+        +F    FT + + +   S +KF+ + + +     +  T    
Sbjct: 74  SNSKFTYSDISHL-----HFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQP 128

Query: 169 S 169
           S
Sbjct: 129 S 129

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 1/65 (1%)

Query: 108 GSAAQFGSADLRKAVHVKE-NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGA 166
            S A F +    K +               +   S F+ S  +  + ++     +  +  
Sbjct: 42  FSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDV 101

Query: 167 DLSDT 171
             S+T
Sbjct: 102 VCSNT 106

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S++   +             +  + T A++  ++   S  +   LE A+  + N +  DL
Sbjct: 39  SSSPLVTTPFGMD-----KAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDL 93

Query: 169 SD 170
            +
Sbjct: 94  EN 95

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
               FG    +       +  RAN ++A++ +SD S      A L +    + +   A L
Sbjct: 44  VTTPFGMDKAKPV-----DLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAIL 98

Query: 169 SDT 171
              
Sbjct: 99  IGA 101

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 49.3 bits (119), Expect = 3e-08
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A     +L +      +   A    A+++ ++   +   GA LE A    A  TG +L
Sbjct: 79  ENAILVETNLSET-----DLENAILIGANLQGANLENANLQGANLENANLRGAILTGVNL 133

Query: 169 SDT 171
            +T
Sbjct: 134 EET 136

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 49.3 bits (119), Expect = 4e-08
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           A    +DL            A     ++ E+D   +   GA L+ A    AN  GA+L +
Sbjct: 66  ANLYQSDLSSI-----ILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLEN 120

Query: 171 T 171
            
Sbjct: 121 A 121

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 48.6 bits (117), Expect = 7e-08
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S     +A L  A     N + AN  +A+++ ++   +   GA L      + +  G + 
Sbjct: 89  SETDLENAILIGA-----NLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGIET 143

Query: 169 SDTLM 173
               +
Sbjct: 144 DKNTV 148

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 5/62 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
              +    DL +A     N   AN   +D+       +      L +     A   GA+L
Sbjct: 49  GMDKAKPVDLTRA-----NLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANL 103

Query: 169 SD 170
             
Sbjct: 104 QG 105

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 45.9 bits (110), Expect = 7e-07
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 5/67 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                   DL  A         AN   A++  ++  G+    A L  A+    N     L
Sbjct: 84  VETNLSETDLENA-----ILIGANLQGANLENANLQGANLENANLRGAILTGVNLEETHL 138

Query: 169 SDTLMDR 175
                D+
Sbjct: 139 KGIETDK 145

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 43.2 bits (103), Expect = 6e-06
 Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171
                +           F     +  D + +  + A L ++         A L +T
Sbjct: 36  IPRSSS-----PLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVET 86

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 42.8 bits (102), Expect = 9e-06
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A    A+L  A     N + AN  +A++R +  +G      +L+             +
Sbjct: 99  IGANLQGANLENA-----NLQGANLENANLRGAILTGVNLEETHLK-----GIETDKNTV 148

Query: 169 SD 170
            D
Sbjct: 149 WD 150

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 111 AQFGSADLRKAVHVKENFR---RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 167
            +    +L      +ENF    R   +S+ +  + F   K     L +A    AN   +D
Sbjct: 13  RECVGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSD 72

Query: 168 LSD 170
           LS 
Sbjct: 73  LSS 75

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 4/59 (6%)

Query: 115 SADLRKAVHVKENFRRANFTSADMRESDFSGSK---FNGAYLEKAVAYKANFTGADLSD 170
           + +L +   ++      N    ++   +F        + + L             DL+ 
Sbjct: 3   TNNLYRL-ELERECVGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTR 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	99.91
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	99.91
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	99.91
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	99.91
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	99.91
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	99.9
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	99.89
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	99.89
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	99.88
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	99.88
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	99.88
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	99.87
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	99.87
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	99.85
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	99.83
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	99.81
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	99.8
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	99.79
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	99.77
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	99.77
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	99.61

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A

Probab=99.91  E-value=4.3e-26  Score=176.68  Aligned_cols=57  Identities=25%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             cccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeee
Q 029950          125 KENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVT  181 (185)
Q Consensus       125 ~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~  181 (185)
                      +++|++++|.+|+|.+|+|++++|.+++|.+++|.+++|++++|+++++++++|+++
T Consensus       134 ~a~l~~a~l~~a~l~~a~L~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~ga  190 (201)
T 2j8k_A          134 HANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGT  190 (201)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTS
T ss_pred             CCEeeecCcCcCCCCCCCCCCCCcCCCEeCCCCcCCCCCCCCCCCCCCcCCCEECcC
Confidence            333333333333333333333333333333333333333333333333334444333

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A

Probab=99.91  E-value=3.3e-26  Score=177.29  Aligned_cols=74  Identities=27%  Similarity=0.329  Sum_probs=34.9

Q ss_pred             ccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeeee
Q 029950          109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTT  182 (185)
Q Consensus       109 ~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~~  182 (185)
                      .+++|.+++|++++|.+++|++++|.+|+|++|+|.+++|.+++|++++|.+++|++++|++++|+++.+.+..
T Consensus       123 ~~a~l~~a~l~~a~l~~a~l~~a~l~~a~L~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~ga~l~~~~  196 (201)
T 2j8k_A          123 KAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGTILEGGN  196 (201)
T ss_dssp             TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTSTTTTC-
T ss_pred             ccccccCCEEeCCEeeecCcCcCCCCCCCCCCCCcCCCEeCCCCcCCCCCCCCCCCCCCcCCCEECcCCCCCCc
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444443

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}

Probab=99.91  E-value=3.8e-27  Score=183.79  Aligned_cols=157  Identities=6%  Similarity=-0.020  Sum_probs=110.7

Q ss_pred             CCCCCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccc
Q 029950           20 SSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEA   99 (185)
Q Consensus        20 ~~~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (185)
                      ++..++++++|+++.|.+|+|++++|++++|.++.|.+|+   +..+.|.++.+.++.|..+.+.   .+.|.++++.++
T Consensus        42 l~~~~l~~~~l~~~~f~~~~~~~~~~~~a~l~~~~f~~~~---l~~~~f~~a~l~~~~f~~~~l~---~a~f~~a~l~~~  115 (214)
T 2w7z_A           42 LPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACD---FSNVEWLSGSFHRVTFLRCNLT---GTNFADSYLXDC  115 (214)
T ss_dssp             CCSCEEESCEEEEEEEEEEECTTCEEETCEEEEEEEESCB---CTTCBCTTCEEEEEEEESCBCT---TCBCTTCEEEEE
T ss_pred             eecCcccCCEeccCEEEcCEEeCCccCCCEecCCEEEeeE---CcCCCccCCEEEeeEEeCCeee---CCCcCCCEeeee
Confidence            3445566666666667777777777766666666666666   4455454444444333332211   333555666666


Q ss_pred             cccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEee
Q 029950          100 ETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKL  179 (185)
Q Consensus       100 ~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~  179 (185)
                      .+.++++  .+++|++++|+++.|.+|+|++++|.+|+|++++|.+++|.+++|.+++|++++|++++|.+++|.+++|+
T Consensus       116 ~f~~~~l--~~a~f~~a~l~~~~f~~~~l~~a~f~~a~L~~a~f~~~~L~~a~f~~a~l~~~~l~~a~l~~~~~~~a~l~  193 (214)
T 2w7z_A          116 LFEDCXA--DYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLS  193 (214)
T ss_dssp             EEESCBC--TTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCCCTTCBCTTSBCSCCBCCGGGCT
T ss_pred             EEeCCCC--CCCcCCcCccCceEEEecccCCCCccCCEEEEEEEEecccccCEecCCeeccCCcccCCcCceEcCHHHcC
Confidence            6666666  77888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             eeecC
Q 029950          180 VTTTN  184 (185)
Q Consensus       180 ~~~~~  184 (185)
                      |+++.
T Consensus       194 ga~~~  198 (214)
T 2w7z_A          194 GLXVT  198 (214)
T ss_dssp             TCEEC
T ss_pred             CcccC
Confidence            87664

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A

Probab=99.91  E-value=1.1e-26  Score=178.76  Aligned_cols=172  Identities=14%  Similarity=0.089  Sum_probs=113.8

Q ss_pred             cCCcccccceeeccC-CCCCCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhh
Q 029950            5 SISPLSIKSLNFCSS-SSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVAS   83 (185)
Q Consensus         5 ~~~~~~~~~~~~~~~-~~~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~   83 (185)
                      .+.+..+.+..|... ++...+.++.|++|.|.+|+|++++|+++.|.+|.|.+|+   +..+.|.++.+.++.+..+.+
T Consensus         5 ~l~~~~~~~~~f~~~~l~~~~l~~~~~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~---l~~a~~~~a~l~~~~f~~~~l   81 (200)
T 2xt2_A            5 TLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCN---LSLISIPQTSFMEVRFVDCKM   81 (200)
T ss_dssp             CCCCSEEESCEEESCBCTTCEEESCEEESCEEESCBCTTCEEESCEEEEEEEESCB---CTTCBCTTCEEEEEEEESCBC
T ss_pred             CcccchhcCCEeecCccccCccccCEEccCEEEeeeccCCeecCCEEEecEeeecc---cccCccccCeeeeeEEEcCEe
Confidence            344555666666553 3444577777777777777777777777777777777777   555555555544443333221


Q ss_pred             ccCCchhhhccc------cccccccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCce
Q 029950           84 CSSNISALADLN------KYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAV  157 (185)
Q Consensus        84 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~  157 (185)
                      .   ...+.+++      +.++.+.++.+  .+++|.+++|+++.|.+|+|++++|.+|+|++++|.+++|.+++|.+++
T Consensus        82 ~---~a~f~~a~~~~~~~l~~~~f~~~~l--~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~  156 (200)
T 2xt2_A           82 L---GVNWTSAQWPSVKMEGALSFERCIL--NDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTK  156 (200)
T ss_dssp             T---TCBGGGSCCCSSCCTTSEEEESCBC--TTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCB
T ss_pred             c---CCccccCcccccccccceEEEcCcc--cccEEccCccCCCEecCCEeecccCCCCccccCCccCcccCCCCccCCc
Confidence            1   12233333      44445555556  6677777777777777777777777777777777777777777777777


Q ss_pred             eeCcEEcCCccCCCcccCeEeeeeecC
Q 029950          158 AYKANFTGADLSDTLMDRMVKLVTTTN  184 (185)
Q Consensus       158 l~~a~l~~a~l~~a~~~~~~l~~~~~~  184 (185)
                      |.+++|++++|.+++++++++++++++
T Consensus       157 l~~a~f~~a~l~~~~~~~~~l~ga~~~  183 (200)
T 2xt2_A          157 LTGASFIDAVNYHIDIFHNDIKRARFS  183 (200)
T ss_dssp             CTTCBCTTCBSCCCCTTSSBCTTCEEC
T ss_pred             cccCCcCCCCccccccccccccCcEEC
Confidence            777777777777777777777777654

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A

Probab=99.91  E-value=5.5e-27  Score=179.30  Aligned_cols=149  Identities=14%  Similarity=0.144  Sum_probs=85.3

Q ss_pred             CCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhcccccccccc
Q 029950           23 GPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETR  102 (185)
Q Consensus        23 ~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (185)
                      .++++++|+++.|.+|+|++++|++++|.+|.|.+|.   +..+.|.++.+.+|.+.+        +.+..+++.++.+.
T Consensus        20 ~~l~~~~l~~~~f~~~~f~~~~l~~a~l~~~~~~~~~---f~~~~l~~a~f~~~~l~~--------~~f~~~~l~~~~f~   88 (186)
T 2bm5_A           20 EDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCT---FERTTLWHSTFAQCSMLG--------SVFVACRLRPLTLD   88 (186)
T ss_dssp             CBCTTCEEESCEEESCBCTTCBCTTCEEESCEEESCE---EESCBCTTCEEEEEECTT--------CEEESCBCCSCEEE
T ss_pred             CccCCCEecCCEeCCCCcCCCCCCCCEecCCCcCCcC---cCCceeCCCCcCCCCcCC--------CcccCCeeccCEEe
Confidence            3445555555555555555555555555555554444   333333333322222221        12444444444444


Q ss_pred             CcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeeee
Q 029950          103 GEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTT  182 (185)
Q Consensus       103 ~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~~  182 (185)
                      ++.+  .+++|.+++|++++|.+|+|++++|.+|+|++++|.+++|.+++|.+++|.+++|++++|.++++.+++|++++
T Consensus        89 ~~~l--~~a~f~~a~l~~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~~~a~l~ga~  166 (186)
T 2bm5_A           89 DVDF--TLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGAR  166 (186)
T ss_dssp             EEEC--TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHHHHSBCTTCB
T ss_pred             ccCc--CcCccCCCccCCCeeccCEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEeeccccccCeecccC
Confidence            4444  56666666777777777777777777777777777777777777777777777777777777777777777766


Q ss_pred             cC
Q 029950          183 TN  184 (185)
Q Consensus       183 ~~  184 (185)
                      ++
T Consensus       167 ~~  168 (186)
T 2bm5_A          167 VD  168 (186)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A

Probab=99.90  E-value=1.6e-25  Score=174.91  Aligned_cols=66  Identities=21%  Similarity=0.187  Sum_probs=26.9

Q ss_pred             ecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeeeec
Q 029950          118 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTTT  183 (185)
Q Consensus       118 L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~~~  183 (185)
                      |++++|.+|+|.+++|.+|+|++++|++++|.+++|.+++|++++|++++|.++++++++|+++.+
T Consensus       134 l~~~~l~~~~~~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~adl~~a~l~~~~l~~a~l~ga~~  199 (217)
T 2xty_A          134 LEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKL  199 (217)
T ss_dssp             CTTCBCCSCBCTTCBCTTCBCTTCBCTTCBCTTCCTTSSBCTTCBCTTCBCTTCCTTTSCCTTCEE
T ss_pred             cccCcccCCCcCCCeeCcCEECCCccCCCCCCCCCcCCCcCCCCcCCCCCcCCCcCCCCccCcCEe
Confidence            333333333333333333333333333334444444444444444444444444444444444443

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}

Probab=99.89  E-value=9.7e-25  Score=174.17  Aligned_cols=48  Identities=29%  Similarity=0.400  Sum_probs=26.4

Q ss_pred             ceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeeeec
Q 029950          136 ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTTT  183 (185)
Q Consensus       136 a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~~~  183 (185)
                      ++|++++|.+++|++|+|++++|.+++|++++|.+++|++++|+|+++
T Consensus       203 adl~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~ga~l~~a~l~ga~~  250 (257)
T 3du1_X          203 ADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIM  250 (257)
T ss_dssp             CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred             cccCCCccCCCcCCCCcCCCCcCCCCCCCCCCccCCEeCCCcccccCC
Confidence            444455555555555555555555555555555555555555555544

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A

Probab=99.89  E-value=4.5e-25  Score=171.69  Aligned_cols=25  Identities=12%  Similarity=0.017  Sum_probs=9.6

Q ss_pred             eeCcEEcCCccCCCcccCeEeeeee
Q 029950          158 AYKANFTGADLSDTLMDRMVKLVTT  182 (185)
Q Consensus       158 l~~a~l~~a~l~~a~~~~~~l~~~~  182 (185)
                      |++++|++++|.++++.+++|++++
T Consensus       173 l~~a~l~~a~l~~~~l~~~~l~ga~  197 (216)
T 3pss_A          173 LQGCDLRQCDLPGLDLRRVNLDGVQ  197 (216)
T ss_dssp             CTTCBCTTCCCTTCCTTTSCCTTCE
T ss_pred             cCCCCccCCEecCcccccCcccCcE
Confidence            3333333333333333344444443

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A

Probab=99.88  E-value=6.5e-24  Score=165.10  Aligned_cols=51  Identities=12%  Similarity=0.131  Sum_probs=28.6

Q ss_pred             CCCcccccccCceecceecc------CCCCCCcccCCcccccCCCCccccccHHHHHHHH
Q 029950           22 KGPYQLHALSKPLWVACQIS------SKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTA   75 (185)
Q Consensus        22 ~~~~~~a~l~~~~f~~c~~~------~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~   75 (185)
                      ..+|++++|.++.|.+|.|.      +++|++++|.++.|.+|+   +..+.|.++.+.+
T Consensus        29 ~~~f~~a~l~~~~f~~~~f~~~~~l~~~~f~~a~l~~~~f~~~~---l~~~~f~~a~l~~   85 (216)
T 3pss_A           29 GCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCD---LTMADCSRSQCLG   85 (216)
T ss_dssp             SCBCTTCBCTTCEEESCBCCBTTTTBCCBCTTCBCTTCEEESCB---CTTCBCTTCBCTT
T ss_pred             ccccccCcccCCEEEEeEeccCCccCCcEeCCCCccCCCcCccC---CCCCccCCCCccc
Confidence            33455555555555555554      666666666666666666   4555454444433

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A

Probab=99.88  E-value=2.7e-25  Score=171.01  Aligned_cols=66  Identities=21%  Similarity=0.391  Sum_probs=26.3

Q ss_pred             ccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCccc
Q 029950          109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD  174 (185)
Q Consensus       109 ~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~  174 (185)
                      .+++|.+++|++++|.+++|++++|.+|+|.+++|.+++|.+++|+++++.+++|++++|+++.+.
T Consensus       118 ~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~~~~~~~~l~ga~~~  183 (200)
T 2xt2_A          118 AGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFS  183 (200)
T ss_dssp             TTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBCTTCBSCCCCTTSSBCTTCEEC
T ss_pred             CCCEecCCEeecccCCCCccccCCccCcccCCCCccCCccccCCcCCCCccccccccccccCcEEC
Confidence            333334444444444444444444444444444444444444444444333333333333333333

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}

Probab=99.88  E-value=2.9e-25  Score=173.08  Aligned_cols=144  Identities=10%  Similarity=-0.050  Sum_probs=83.5

Q ss_pred             cccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccccccCc
Q 029950           25 YQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGE  104 (185)
Q Consensus        25 ~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (185)
                      +.++.|+++.|.+++|++++|+++.|.+|.|.+|+   +..+.|.++.+.+|.+...        .+.++++.++.|.++
T Consensus        32 l~~~~~~~~~l~~~~l~~~~l~~~~f~~~~~~~~~---~~~a~l~~~~f~~~~l~~~--------~f~~a~l~~~~f~~~  100 (214)
T 2w7z_A           32 LENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQ---FASFDCSNVRFEACDFSNV--------EWLSGSFHRVTFLRC  100 (214)
T ss_dssp             EESSEEEEEECCSCEEESCEEEEEEEEEEECTTCE---EETCEEEEEEEESCBCTTC--------BCTTCEEEEEEEESC
T ss_pred             ccCCEEecceeecCcccCCEeccCEEEcCEEeCCc---cCCCEecCCEEEeeECcCC--------CccCCEEEeeEEeCC
Confidence            55555555555555555555555555555555555   4444444444444444432        255666666666666


Q ss_pred             ccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeee
Q 029950          105 FGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVT  181 (185)
Q Consensus       105 ~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~  181 (185)
                      ++  .+++|++++|.++.|.+|+|.+++|.+++|.++.|.+++|.+++|.+++|++++|.+++|++++|.+++|+++
T Consensus       101 ~l--~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~L~~a~f~~~~L~~a~f~~a~l~~~  175 (214)
T 2w7z_A          101 NL--TGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGL  175 (214)
T ss_dssp             BC--TTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCCCTTC
T ss_pred             ee--eCCCcCCCEeeeeEEeCCCCCCCcCCcCccCceEEEecccCCCCccCCEEEEEEEEecccccCEecCCeeccC
Confidence            66  6677777777777777777666666666666666666666666555555555555555555555555555444

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A

Probab=99.87  E-value=2.2e-23  Score=159.24  Aligned_cols=142  Identities=16%  Similarity=0.069  Sum_probs=66.2

Q ss_pred             CCCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccccc
Q 029950           22 KGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAET  101 (185)
Q Consensus        22 ~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (185)
                      ...|.+++|+++.|.++.|.+++|++++|.++.|.+|+   +..+.|.++.+     .        .+.+..+++.++.|
T Consensus        14 ~~~f~~~~l~~~~l~~~~f~~~~f~~~~l~~a~l~~~~---~~~~~f~~~~l-----~--------~a~f~~~~l~~~~f   77 (186)
T 2bm5_A           14 GRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSA---FRNCTFERTTL-----W--------HSTFAQCSMLGSVF   77 (186)
T ss_dssp             SCBCTTCBCTTCEEESCEEESCBCTTCBCTTCEEESCE---EESCEEESCBC-----T--------TCEEEEEECTTCEE
T ss_pred             CCCcccCccCCCEecCCEeCCCCcCCCCCCCCEecCCC---cCCcCcCCcee-----C--------CCCcCCCCcCCCcc
Confidence            33455555555555555555555555555555555555   23222222111     1        11133333333334


Q ss_pred             cCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeee
Q 029950          102 RGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVT  181 (185)
Q Consensus       102 ~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~  181 (185)
                      .++++  .+++|.+++|.+++|.+++|++++|.+|+|.+++|.+++|.+++|++++|.+++|.+++|++++|+++.+.++
T Consensus        78 ~~~~l--~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~  155 (186)
T 2bm5_A           78 VACRL--RPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPV  155 (186)
T ss_dssp             ESCBC--CSCEEEEEECTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHH
T ss_pred             cCCee--ccCEEeccCcCcCccCCCccCCCeeccCEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEeecc
Confidence            33333  4444444445555555555555555555555555555555555555555555555555555555444444433

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}

Probab=99.87  E-value=8.8e-23  Score=151.15  Aligned_cols=90  Identities=21%  Similarity=0.199  Sum_probs=59.9

Q ss_pred             hhccccccccccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCC
Q 029950           91 LADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD  170 (185)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~  170 (185)
                      +.++++.++.+.++++  .+++|.+++|.+++|.+++|++++|.+|+|++++|.+++|.+++|.+++|.+++|.+++|++
T Consensus        58 l~~a~l~~a~l~~a~l--~~a~~~~a~l~~a~l~~a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a~l~~  135 (150)
T 2o6w_A           58 LTRANLSNANLYQSDL--SSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGAILTGVNLEE  135 (150)
T ss_dssp             CTTCBCTTCBCTTCBC--TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred             eCCCCCCCCCccCCCC--CCCCcCCCCCCCCEecCCCCCCCEecCCCCCCCCCCCceecccEECCCCcCcCCccCCCCCC
Confidence            4444455555555555  56666666777777777777777777777777777777777777777777777777777777


Q ss_pred             CcccCeEeeeee
Q 029950          171 TLMDRMVKLVTT  182 (185)
Q Consensus       171 a~~~~~~l~~~~  182 (185)
                      ++|+++.+++.+
T Consensus       136 a~l~ga~~~~~t  147 (150)
T 2o6w_A          136 THLKGIETDKNT  147 (150)
T ss_dssp             CBCTTCBCCTTC
T ss_pred             CCcCCCEecCCc
Confidence            777776666554

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}

Probab=99.85  E-value=1.4e-21  Score=144.70  Aligned_cols=89  Identities=18%  Similarity=0.181  Sum_probs=38.1

Q ss_pred             hccccccccccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCC
Q 029950           92 ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT  171 (185)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a  171 (185)
                      .++++.++++.++.+  .+++|.+++|++++|.+++|.+++|.+++|.+|+|++++|.+|+|.+++|.+++|++++|.++
T Consensus        54 ~~~~l~~a~l~~a~l--~~a~l~~a~~~~a~l~~a~l~~a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a  131 (150)
T 2o6w_A           54 KPVDLTRANLSNANL--YQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGAILTGV  131 (150)
T ss_dssp             CCCBCTTCBCTTCBC--TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred             CCCEeCCCCCCCCCc--cCCCCCCCCcCCCCCCCCEecCCCCCCCEecCCCCCCCCCCCceecccEECCCCcCcCCccCC
Confidence            334444444433333  334444444444444444444444444444444444444444444444444444444444444


Q ss_pred             cccCeEeeeee
Q 029950          172 LMDRMVKLVTT  182 (185)
Q Consensus       172 ~~~~~~l~~~~  182 (185)
                      ++++++|+++.
T Consensus       132 ~l~~a~l~ga~  142 (150)
T 2o6w_A          132 NLEETHLKGIE  142 (150)
T ss_dssp             BCTTCBCTTCB
T ss_pred             CCCCCCcCCCE
Confidence            44444444443

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A

Probab=99.83  E-value=2.3e-21  Score=148.10  Aligned_cols=68  Identities=18%  Similarity=0.250  Sum_probs=29.7

Q ss_pred             ccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeee
Q 029950          114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVT  181 (185)
Q Consensus       114 ~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~  181 (185)
                      .+++|.+++|.+++|++++|.+++|.+|+|.+++|.+|+|.+++|.+++|.+++|++++|+++.|+++
T Consensus        90 ~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~l~~a~l~~a~f~~a~L~gadf~~a~l~~~  157 (184)
T 2f3l_A           90 RGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVY  157 (184)
T ss_dssp             TTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEECHH
T ss_pred             cEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCEeeCCEECCCEEeCCEecCCEecCCCCCcC
Confidence            33333333333333333333333334444444444444444444444444444444555554444444

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A

Probab=99.81  E-value=7.5e-21  Score=145.24  Aligned_cols=82  Identities=16%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             ccccccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCe
Q 029950           97 YEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRM  176 (185)
Q Consensus        97 ~~~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~  176 (185)
                      .+++|.++++  .+++|.+++|++++|.+++|+++.|.+++|++|+|++++|.+|+|.+++|.+++|++++|++++++++
T Consensus        80 ~~a~f~~a~L--~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~l~~a~l~~a~f~~a~L~gadf~~a~l~~~  157 (184)
T 2f3l_A           80 TDSNFSEADL--RGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVY  157 (184)
T ss_dssp             TTCBCTTCBC--TTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEECHH
T ss_pred             ccCCcCCCCC--cEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCEeeCCEECCCEEeCCEecCCEecCCCCCcC
Confidence            3344444444  55666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             Eeee
Q 029950          177 VKLV  180 (185)
Q Consensus       177 ~l~~  180 (185)
                      ++++
T Consensus       158 ~l~~  161 (184)
T 2f3l_A          158 EVDK  161 (184)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            6554

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0

Probab=99.80  E-value=2e-20  Score=138.69  Aligned_cols=116  Identities=20%  Similarity=0.190  Sum_probs=65.4

Q ss_pred             ccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccccccCcc
Q 029950           26 QLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEF  105 (185)
Q Consensus        26 ~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (185)
                      .++.|.++.|.+++|.+++|++++|.++.|.+|++                                    .++.|.+++
T Consensus         4 ~g~~~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l------------------------------------~~a~f~~a~   47 (152)
T 3n90_A            4 GGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSIL------------------------------------RQANFKGAK   47 (152)
T ss_dssp             GGCCCCHHHHTTCBCTTCBCTTCBCTTCBCTTCBC------------------------------------TTCBCTTCB
T ss_pred             CCCcccCceEcCCCccCCcCCCCCcCcCccCCCee------------------------------------CCCEeCCCC
Confidence            45555666666666666666666666666666662                                    222333333


Q ss_pred             cccccceeccceecccccccccccCceeccceecCeeecCceecCceeeC-ceeeCcEEcCCccCCCcccCeEee
Q 029950          106 GIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEK-AVAYKANFTGADLSDTLMDRMVKL  179 (185)
Q Consensus       106 ~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~-a~l~~a~l~~a~l~~a~~~~~~l~  179 (185)
                      +  .+++|.+++|++++|.+|+|++++|.+|+|++++|.+++|.+++|.+ ++|.+++|++++|++++|++++++
T Consensus        48 l--~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~~~g~~~~~~a~l~~a~~~~a~l~~~~l~  120 (152)
T 3n90_A           48 L--LGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRV  120 (152)
T ss_dssp             C--TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCSSCBCTTCBCTTCBCTTCCCCHHHHH
T ss_pred             C--CCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCEEcCCceECCCEecCCEecCCccCcHHHH
Confidence            3  44555556666666666666666666666666666666666666652 555555555555555555554443

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A

Probab=99.79  E-value=1.2e-19  Score=159.41  Aligned_cols=124  Identities=20%  Similarity=0.139  Sum_probs=58.2

Q ss_pred             CCCCCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccc
Q 029950           20 SSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEA   99 (185)
Q Consensus        20 ~~~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (185)
                      +.+.+|++++|.++.|.+|+|.+++|++|.|.+|.|.+|++                          ..+.+.++++.++
T Consensus        29 f~~~dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anL--------------------------sgA~L~gA~L~~a   82 (613)
T 3nb2_A           29 AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDL--------------------------SQAVLENCSFKNS   82 (613)
T ss_dssp             TTTTBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC--------------------------TTCBCTTCEEEEE
T ss_pred             cCCCeeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEe--------------------------CCCCCCCCEeCCC
Confidence            34444555555555555555555555555555555555552                          1222334444444


Q ss_pred             cccCcccccccceeccceecccccccccccCceeccceecCeeecC--ceecCceeeCcee-eCcEEcCCccCCCc
Q 029950          100 ETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSG--SKFNGAYLEKAVA-YKANFTGADLSDTL  172 (185)
Q Consensus       100 ~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~--a~L~~a~f~~a~l-~~a~l~~a~l~~a~  172 (185)
                      .+.++++  .+++|++++|+ +.|.+|+|++|+|.+|+|++|+|.+  |+|.+|+|++|++ .+++|++|+|.+++
T Consensus        83 ~L~~anL--~~AnL~~A~L~-a~L~~A~LsgAdL~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~L~~a~  155 (613)
T 3nb2_A           83 ILNECNF--CYANLSNCIIR-ALFENSNFSNSNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDVK  155 (613)
T ss_dssp             ECTTCBC--TTCBCTTCEEE-EECTTCBCTTCBCTTCBCTTCBCSSSCCBCTTCBCTTCEECTTCCCTTCBCCCCS
T ss_pred             ccCCCcc--CCCccccCccc-ceeccCEecCCeecccEEeccEEecCccceeccccCCCeeCCCceecCCCccCCe
Confidence            4444444  34444444422 2244444444444444444444443  4444444444444 44444444444444

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A

Probab=99.77  E-value=2.6e-19  Score=157.23  Aligned_cols=88  Identities=15%  Similarity=0.141  Sum_probs=36.2

Q ss_pred             hhccccccccccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeC--ceeeCcEEcCCcc
Q 029950           91 LADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEK--AVAYKANFTGADL  168 (185)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~--a~l~~a~l~~a~l  168 (185)
                      +.++++.++.+.++.+  .+++|.+|+|.+++|.+++++ +.|.+|+|++|+|.+++|.+|+|.+  ++|.+++|++|+|
T Consensus        64 f~~anLsgA~L~gA~L--~~a~L~~anL~~AnL~~A~L~-a~L~~A~LsgAdL~~AdL~gA~f~~~~adL~gAdL~gA~L  140 (613)
T 3nb2_A           64 LRMSDLSQAVLENCSF--KNSILNECNFCYANLSNCIIR-ALFENSNFSNSNLKNASFKGSSYIQYPPILNEADLTGAII  140 (613)
T ss_dssp             CTTCBCTTCBCTTCEE--EEEECTTCBCTTCBCTTCEEE-EECTTCBCTTCBCTTCBCTTCBCSSSCCBCTTCBCTTCEE
T ss_pred             ecCCEeCCCCCCCCEe--CCCccCCCccCCCccccCccc-ceeccCEecCCeecccEEeccEEecCccceeccccCCCee
Confidence            3344444444443333  334444444444444444411 1144444444444444444444443  4444444444444


Q ss_pred             -CCCcccCeEeeee
Q 029950          169 -SDTLMDRMVKLVT  181 (185)
Q Consensus       169 -~~a~~~~~~l~~~  181 (185)
                       .+++|++++|+++
T Consensus       141 l~gAdLsgA~L~~a  154 (613)
T 3nb2_A          141 IPGMVLSGAILGDV  154 (613)
T ss_dssp             CTTCCCTTCBCCCC
T ss_pred             CCCceecCCCccCC
Confidence             4444444444444

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0

Probab=99.77  E-value=1.3e-19  Score=134.32  Aligned_cols=113  Identities=19%  Similarity=0.192  Sum_probs=57.2

Q ss_pred             CCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhcccccccccc
Q 029950           23 GPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETR  102 (185)
Q Consensus        23 ~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (185)
                      ..|.++.|.++.|.+++|++++|.+++|.+|.|.+++                               +.++++.++.|.
T Consensus         6 ~~~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~-------------------------------f~~a~l~~a~f~   54 (152)
T 3n90_A            6 GPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQAN-------------------------------FKGAKLLGASFF   54 (152)
T ss_dssp             CCCCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCB-------------------------------CTTCBCTTCBCT
T ss_pred             CcccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCE-------------------------------eCCCCCCCCCcc
Confidence            3445555555555555555555555555555555555                               222233334444


Q ss_pred             CcccccccceeccceecccccccccccCceeccceecCeeecC-ceecCceeeCceeeCcEEcCCcc
Q 029950          103 GEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSG-SKFNGAYLEKAVAYKANFTGADL  168 (185)
Q Consensus       103 ~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~-a~L~~a~f~~a~l~~a~l~~a~l  168 (185)
                      ++++  .+++|++++|++++|.+|+|++++|.+|+|.++.|.+ ++|.+++|.+++|.+++|+++++
T Consensus        55 ~a~l--~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~~~g~~~~~~a~l~~a~~~~a~l~~~~l  119 (152)
T 3n90_A           55 DADL--TGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQR  119 (152)
T ss_dssp             TCBC--TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCSSCBCTTCBCTTCBCTTCCCCHHHH
T ss_pred             ccCc--CCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCEEcCCceECCCEecCCEecCCccCcHHH
Confidence            4444  4455555555555555555555555555555555552 55555555555555554444443

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A

Probab=99.61  E-value=9.7e-16  Score=133.43  Aligned_cols=15  Identities=13%  Similarity=0.198  Sum_probs=6.1

Q ss_pred             CCCCcccCCcccccC
Q 029950           44 TESDGQFPDCSNNQC   58 (185)
Q Consensus        44 ~f~~a~l~~~~F~~c   58 (185)
                      +|++++|.++.|.++
T Consensus        41 DFsg~DLsgadLs~a   55 (627)
T 2qyu_A           41 DFSNADFRNITFSKI   55 (627)
T ss_dssp             BCTTCBCTTCBGGGT
T ss_pred             cCCCCCCCCCccccc
Confidence            344444444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	2e-07
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	4e-07
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	3e-06
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	1e-05
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	5e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	1e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	0.002
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	0.004
d2f3la1	132	b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya	4e-04
d2f3la1	132	b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya	8e-04
d2f3la1	132	b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya	0.003

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A    A++R+A   + N   A+ + AD+  +D   +  + A LE+A    AN   A+L
Sbjct: 108 EQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANL 167

Query: 169 SDTLMD 174
             T+++
Sbjct: 168 EGTILE 173

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 175
           A L +A     N  +A  + A++RE+D S +    A L  A    A+   A+L    ++R
Sbjct: 95  AVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALER 154

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFS-----GSKFNGAYLEKAVAYKANFTG 165
           A   +A+L +A+    N R A+ + A++  +D S      +  + A L +A   +AN TG
Sbjct: 100 ANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTG 159

Query: 166 ADLSDT 171
           A+L D 
Sbjct: 160 ANLEDA 165

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 24/62 (38%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    ADL +A     +   A+   AD+ +++   +    A L  A    AN  G  L
Sbjct: 113 SHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGTIL 172

Query: 169 SD 170
             
Sbjct: 173 EG 174

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 39.9 bits (92), Expect = 5e-05
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
           A    A L  A+        A    A+++ ++   +  + A + +A   +AN   ADLS
Sbjct: 75  ADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLS 133

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 126 ENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRM 176
           + +    FT  D R+ D S      A   +      +F+G +L+++     
Sbjct: 1   QQWVDCEFTGRDFRDEDLSRLHTERAMFSEC-----DFSGVNLAESQHRGS 46

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 9/41 (21%), Positives = 14/41 (34%)

Query: 112 QFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAY 152
           Q+   +        E+  R +   A   E DFSG     + 
Sbjct: 2   QWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQ 42

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRM 176
           + R+     AD+  +  +G++ + A L  A      +  A L    +D  
Sbjct: 117 DLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVD 166

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 113 FGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL 172
           F  ADL  AV  +    R  F  A +  +DFS +  +   ++K         G +    +
Sbjct: 68  FKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKL---CDRADGVNPKTGV 124

Query: 173 MDRM 176
             R 
Sbjct: 125 STRE 128

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

 Score = 35.9 bits (82), Expect = 8e-04
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTTTNS 185
           +F+ A+ T+A + E+    +KF+ A +  A     +F+ A L    +D++       N 
Sbjct: 67  SFKGADLTNAVLTEAIMMRTKFDDAKITGA-----DFSLAVLDVYEVDKLCDRADGVNP 120

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 132 NFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 175
                  + +D + +    A + +     A  TGAD S  ++D 
Sbjct: 62  LAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDV 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d2j8ka1	175	NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}	99.88
d2bm5a1	181	Hypothetical protein Rv3361c (MT3469) {Mycobacteri	99.88
d2j8ka1	175	NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}	99.86
d2bm5a1	181	Hypothetical protein Rv3361c (MT3469) {Mycobacteri	99.83
d2f3la1	132	Lumenal RFR-domain protein {Cyanothece sp. atcc 51	99.79
d2f3la1	132	Lumenal RFR-domain protein {Cyanothece sp. atcc 51	99.75

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.88  E-value=2.2e-24  Score=161.44  Aligned_cols=91  Identities=22%  Similarity=0.220  Sum_probs=48.9

Q ss_pred             hhccccccccccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCC
Q 029950           91 LADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD  170 (185)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~  170 (185)
                      +..+.+.++.|.++.+  .++.+.+++|+++.|.+++|++++|.+++|.+++|.++.+.+++|.+++|++++|.+++|++
T Consensus        82 f~~~~f~~~~f~~~~f--~~~~~~~~~~~~s~~~~~~f~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  159 (175)
T d2j8ka1          82 LDNAILEGAILDEAVL--NQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTG  159 (175)
T ss_dssp             CTTCBCTTCBCTTCBC--TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred             ccccCccCCcccCeEe--eecccccccccCCEeCCCEeccCCCCCCccccCCCccccccccccCcCCcCCCEeCCCCcCC
Confidence            3334444444444444  44444555555555555555555555555555555555555555555555555555566666


Q ss_pred             CcccCeEeeeeec
Q 029950          171 TLMDRMVKLVTTT  183 (185)
Q Consensus       171 a~~~~~~l~~~~~  183 (185)
                      ++|++++|+++++
T Consensus       160 a~l~~a~~~g~~l  172 (175)
T d2j8ka1         160 ANLEDANLEGTIL  172 (175)
T ss_dssp             CBCTTCBCTTSTT
T ss_pred             CCcCCCEEeceEc
Confidence            6666666666554

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=2e-25  Score=168.09  Aligned_cols=150  Identities=13%  Similarity=0.131  Sum_probs=89.2

Q ss_pred             CCCCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhcccccccc
Q 029950           21 SKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAE  100 (185)
Q Consensus        21 ~~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (185)
                      .+.++++++|++|.|.+|+|.+++|+++.|.+|.|.+|.   ++.+.|.++.+.+|.+.+.        .+..+++.++.
T Consensus        14 ~~~~l~~~~~~~~~f~~~~f~~~~l~~~~f~~~~f~~~~---f~~~~l~~~~f~~~~l~~~--------~f~~a~l~~~~   82 (181)
T d2bm5a1          14 RDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCT---FERTTLWHSTFAQCSMLGS--------VFVACRLRPLT   82 (181)
T ss_dssp             TTCBCTTCEEESCEEESCBCTTCBCTTCEEESCEEESCE---EESCBCTTCEEEEEECTTC--------EEESCBCCSCE
T ss_pred             CCCCCCCCCcCCCeeeCCCccCccCCCCcccccccceee---eeccccccccccccccccc--------ccccccccccc
Confidence            344566666666666666666666666666666666666   4555454444433322221        13334444444


Q ss_pred             ccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeee
Q 029950          101 TRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLV  180 (185)
Q Consensus       101 ~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~  180 (185)
                      +.++.+  .++.|.+++|++++|.++.|++++|.+++|+++.|.+++|.+++|.+++|.++||+++++.++.+.++.|++
T Consensus        83 ~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~a~l~~adf~~~~~~~~~~~~a~l~g  160 (181)
T d2bm5a1          83 LDDVDF--TLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVG  160 (181)
T ss_dssp             EEEEEC--TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHHHHSBCTT
T ss_pred             cccccc--ccccccccccccccccchhhcccceecccccccchhheeecCcCccCCCcCCCCcCCCEecCCCcCCCEecc
Confidence            444444  556666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             eec
Q 029950          181 TTT  183 (185)
Q Consensus       181 ~~~  183 (185)
                      +++
T Consensus       161 a~~  163 (181)
T d2bm5a1         161 ARV  163 (181)
T ss_dssp             CBC
T ss_pred             cEE
Confidence            654

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.86  E-value=8.3e-24  Score=158.29  Aligned_cols=71  Identities=24%  Similarity=0.240  Sum_probs=27.5

Q ss_pred             ceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeee
Q 029950          111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVT  181 (185)
Q Consensus       111 ~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~  181 (185)
                      ++|+++.+.+++|.++.|.+++|.+++|++++|.+++|.++.+.+++|++++|++++|.+++|.+++|+++
T Consensus        95 ~~f~~~~~~~~~~~~s~~~~~~f~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~l~~a  165 (175)
T d2j8ka1          95 AVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDA  165 (175)
T ss_dssp             CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred             eEeeecccccccccCCEeCCCEeccCCCCCCccccCCCccccccccccCcCCcCCCEeCCCCcCCCCcCCC
Confidence            33333333333333333333333333333333333333333333333334444444444444444444333

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=5.8e-22  Score=148.85  Aligned_cols=143  Identities=16%  Similarity=0.065  Sum_probs=73.4

Q ss_pred             CCCCCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccc
Q 029950           20 SSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEA   99 (185)
Q Consensus        20 ~~~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (185)
                      +...+|++++|.++.|.+|.|.+++|++++|.++.|.+|+   +..+.|.++.+.             .+.+..+++.++
T Consensus         8 ~~~~~f~~~~l~~~~~~~~~f~~~~f~~~~l~~~~f~~~~---f~~~~f~~~~l~-------------~~~f~~~~l~~~   71 (181)
T d2bm5a1           8 FTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSA---FRNCTFERTTLW-------------HSTFAQCSMLGS   71 (181)
T ss_dssp             EESCBCTTCBCTTCEEESCEEESCBCTTCBCTTCEEESCE---EESCEEESCBCT-------------TCEEEEEECTTC
T ss_pred             CCCCcCCCCCCCCCCcCCCeeeCCCccCccCCCCcccccc---cceeeeeccccc-------------cccccccccccc
Confidence            4556777888888888888888888888888888888888   444444322221             122233333333


Q ss_pred             cccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEee
Q 029950          100 ETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKL  179 (185)
Q Consensus       100 ~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~  179 (185)
                      .+..+.+  .++.|.+++|.++.|.+++|++++|.++.|.+++|.+++|.+++|.+++|.+++|.+++|.+++|+++.+.
T Consensus        72 ~f~~a~l--~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~a~l~~adf~~~~~~  149 (181)
T d2bm5a1          72 VFVACRL--RPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVD  149 (181)
T ss_dssp             EEESCBC--CSCEEEEEECTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCC
T ss_pred             ccccccc--ccccccccccccccccccccccccccchhhcccceecccccccchhheeecCcCccCCCcCCCCcCCCEec
Confidence            3333333  33444444444444444444444444444444444444444444444444444444444444444444443


Q ss_pred             e
Q 029950          180 V  180 (185)
Q Consensus       180 ~  180 (185)
                      +
T Consensus       150 ~  150 (181)
T d2bm5a1         150 P  150 (181)
T ss_dssp             H
T ss_pred             C
Confidence            3

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

Probab=99.79  E-value=2.1e-20  Score=133.57  Aligned_cols=71  Identities=18%  Similarity=0.171  Sum_probs=38.5

Q ss_pred             ccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEee
Q 029950          109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKL  179 (185)
Q Consensus       109 ~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~  179 (185)
                      .+++|.+++|.+++|.+++|.+++|.++++.+++|++++|.+++|.++++.+++|++++|++|.+++++++
T Consensus        39 ~ga~f~~~~l~~~~~~~a~l~~a~~~~~~~~~~~~~~a~~~~a~l~~a~~~~a~l~~adfs~a~L~~~~l~  109 (132)
T d2f3la1          39 RGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVD  109 (132)
T ss_dssp             TTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEECHHHHH
T ss_pred             ceeeecccccccccccccccccccccccccchhhhccCCcCCCCcCCCCcCCCEECcCCCCCccCCHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555444443

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

Probab=99.75  E-value=3.9e-19  Score=126.81  Aligned_cols=26  Identities=4%  Similarity=-0.001  Sum_probs=15.3

Q ss_pred             eecceeccCCCCCCcccCCcccccCC
Q 029950           34 LWVACQISSKTESDGQFPDCSNNQCA   59 (185)
Q Consensus        34 ~f~~c~~~~~~f~~a~l~~~~F~~c~   59 (185)
                      .|.+|+|.+++|++++|.++.|.+|+
T Consensus         2 ~F~~~~L~~~dfs~~~l~~a~f~~~~   27 (132)
T d2f3la1           2 SYEDVKLIGEDFSGKSLTYAQFTNAD   27 (132)
T ss_dssp             EEESCBCTTCBCTTCBCTTCEEESCB
T ss_pred             ccCCCCccCCcCCCCcCCCCcccCCC
Confidence            35555555566666666666666666