Citrus Sinensis ID: 029952

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MLSACPAIFSSEMMFGNPFPDFESEFTPWDLPDPFPAPNQSPIPAVSSSSSDEPNQIQTNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVTSAWPCNSAVTNEQTSSLIT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mlsacpaifssemmfgnpfpdfeseftpwdlpdpfpapnqspipavsssssdepnqiqtnsnsgsdepnqtvsviderKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCqrvrtdndrlrsEHTILRRRLSEIRQILLYRQLQQvtsawpcnsavtneqtsslit
Flexible Loop (DISEMBL)
MLSACPAIFSSEMMFGNPFPDFESEFTPWDLPDPFPAPNQSPIPAVSSSSSDEPNQIqtnsnsgsdepnqtvsviderkrrrmisnresarrsrmrkqkhLENLRNQLNRLRMENRELSNRLRFALhhcqrvrtdndrlrsehtILRRRLSEIRQILLYRQLQqvtsawpcnsavtneqtsslit
Low Complexity Region (SEG)
MLSACPAIFSSEMMFGNPFPDFESEFTPWDLPDPFPAPNQSPIPAVsssssDEPNQIQTNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKHlenlrnqlnrlrmenrelsnrlrFALHHCQRVRTDNDRLRSEHTILRRRLSEirqillyrqlqqVTSAWPCNSAVTNEQTSSLIT
Disordered region (IsUnstruct)
************************************************************************************************************************RLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVTSAWPCNS************
Disordered Region (DISOPRED)
*********************FESEFTPWD*********************************************************************HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL***************************
Disordered Region (DISEMBL)
MLSACPAIFSSEMMFGNPFPDFESEFTPWDLPDPFPAPNQSP******************************SVIDERKRRRMIS************QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVTSAWPCNSA***********
Disordered Region (DISPRO)
***************GNPFPDFESEFTPWDLPDPFPAPNQS******************************************************RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVTS******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSACPAIFSSEMMFGNPFPDFESEFTPWDLPDPFPAPNQSPIPAVSSSSSDEPNQIQTNSNSGSDEPNQTVSVIDERKRRRMISNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVTSAWPCNSAVTNEQTSSLIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q9FGX2	145	Basic leucine zipper 1 OS	no	no	0.518	0.662	0.385	6e-09
P24068	151	Ocs element-binding facto	N/A	no	0.562	0.688	0.354	2e-08
Q9FUD3	277	Basic leucine zipper 9 OS	no	no	0.513	0.342	0.346	5e-07
P42774	315	G-box-binding factor 1 OS	no	no	0.464	0.273	0.364	6e-07
Q9SJN0	442	Protein ABSCISIC ACID-INS	no	no	0.275	0.115	0.509	8e-06
Q9M7Q4	416	ABSCISIC ACID-INSENSITIVE	no	no	0.259	0.115	0.520	1e-05
Q99091	296	Light-inducible protein C	N/A	no	0.405	0.253	0.434	1e-05
P12959	453	Regulatory protein opaque	N/A	no	0.4	0.163	0.391	1e-05
P23922	349	Transcription factor HBP-	N/A	no	0.356	0.189	0.397	1e-05
P25032	354	DNA-binding protein EMBP-	N/A	no	0.351	0.183	0.411	3e-05

>sp|Q9FGX2|BZIP1_ARATH Basic leucine zipper 1 OS=Arabidopsis thaliana GN=BZIP1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 56/96 (58%)

Query: 67  EPNQTVSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFAL 126
           E   + S IDE+KR+R +SNRESARRSR++KQK +E+  ++++ L    +E S R R   
Sbjct: 5   EKTSSGSDIDEKKRKRKLSNRESARRSRLKKQKLMEDTIHEISSLERRIKENSERCRAVK 64

Query: 127 HHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQL 162
                V T+N  LRSE   L   +S++  ++    L
Sbjct: 65  QRLDSVETENAGLRSEKIWLSSYVSDLENMIATTSL 100

Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters involved in sugar signaling. Activated by low energy stress both at transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response.
Arabidopsis thaliana (taxid: 3702)

>sp|P24068|OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 6/110 (5%)

Query: 48  SSSSDEPNQIQTNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQ 107
           SSSS  P   +T+ + G    +        R+ +R +SNRESARRSR+RKQ+HL+ L  +
Sbjct: 2   SSSSLSPTAGRTSGSDGDSAADT------HRREKRRLSNRESARRSRLRKQQHLDELVQE 55

Query: 108 LNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157
           + RL+ +N  ++ R R       RV  +N  LR+    L  RL  + ++L
Sbjct: 56  VARLQADNARVAARARDIASQYTRVEQENTVLRARAAELGDRLRSVNEVL 105

May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Zea mays (taxid: 4577)

>sp|Q9FUD3|BZIP9_ARATH Basic leucine zipper 9 OS=Arabidopsis thaliana GN=BZIP9 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)

Query: 50  SSDEPNQIQTNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLN 109
           S DE  + +   +  +++PN      D ++ RRM SNRESA+RSR RKQ++L +L  Q++
Sbjct: 100 SDDEDAETEAGQSEMTNDPN------DLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVD 153

Query: 110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150
            L+ +N  L  +L  A    +   T+N  L+S+   LR ++
Sbjct: 154 SLKGDNSTLYKQLIDATQQFRSAGTNNRVLKSDVETLRVKV 194

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 10/96 (10%)

Query: 72  VSVIDER---KRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHH 128
           V V DER   +++R  SNRESARRSR+RKQ   E L+ ++  L  EN+ L + L      
Sbjct: 215 VPVKDERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSLRDEL------ 268

Query: 129 CQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQ 164
            QR+ ++ D+L+SE+  ++  L  +        L+Q
Sbjct: 269 -QRLSSECDKLKSENNSIQDELQRVLGAEAVANLEQ 303

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJN0|ABI5_ARATH Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 35/51 (68%)

Query: 72  VSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRL 122
           V  + ER++RRMI NRESA RSR RKQ +   L  +LN+L+ EN +L + L
Sbjct: 351 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLKHAL 401

Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth. Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 and Em6 genes promoters. Can also trans-activate its own promoter, suggesting that it is autoregulated. Plays a role in sugar-mediated senescence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q4|AI5L5_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 33/48 (68%)

Query: 71  TVSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENREL 118
           TV  + ER++RRMI NRESA RSR RKQ +   L  ++ +L+ EN EL
Sbjct: 331 TVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENDEL 378

Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q99091|CPRF3_PETCR Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 68  PNQTVSVIDERKR-RRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFAL 126
           P+Q V+   E KR RR  SNRESARRSR+RKQ   + L+ +L+ L  ENR L   L+   
Sbjct: 187 PDQRVNDERELKRQRRKQSNRESARRSRLRKQAKSDELQERLDNLSKENRILRKNLQRIS 246

Query: 127 HHCQRVRTDNDRLRSE 142
             C  V ++N  ++ E
Sbjct: 247 EACAEVTSENHSIKEE 262

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|P12959|OP2_MAIZE Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query: 77  ERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDN 136
           E + R+  SNRESARRSR RK  HL+ L +Q+ +L+ EN  L  R+            DN
Sbjct: 226 EERVRKKESNRESARRSRYRKAAHLKELEDQVAQLKAENSCLLRRIAALNQKYNDANVDN 285

Query: 137 DRLRSEHTILRRRL 150
             LR++   LR ++
Sbjct: 286 RVLRADMETLRAKV 299

Involved in the regulation of the endosperm-specific production of albumin b-32 and other zein proteins. It is a trans-acting transcriptional activator that binds to the consensus sequence 5'-GATGAYRTGR-3'.

Zea mays (taxid: 4577)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 7/73 (9%)

Query: 78  RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDND 137
           +K++R +SNRESARRSR+RKQ   E L  +   L+ EN    + LR  L    R++ + +
Sbjct: 254 KKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSEN----SSLRIEL---DRIKKEYE 306

Query: 138 RLRSEHTILRRRL 150
            L S++T L+ +L
Sbjct: 307 ELLSKNTSLKAKL 319

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P25032|EMBP1_WHEAT DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 75  IDER---KRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQR 131
           +DER   + RR  SNRESARRSR+RKQ+  E L  +++ L   N  L + L      C+ 
Sbjct: 246 MDERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKT 305

Query: 132 VRTDNDRL 139
           + T+N +L
Sbjct: 306 METENKKL 313

Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
224127192	197	predicted protein [Populus trichocarpa]	0.945	0.888	0.662	2e-59
255585781	201	Ocs element-binding factor, putative [Ri	1.0	0.920	0.636	2e-55
147825147	297	hypothetical protein VITISV_018458 [Viti	0.989	0.616	0.587	8e-52
224097230	154	predicted protein [Populus trichocarpa]	0.810	0.974	0.570	5e-46
357476543	174	Ocs element-binding factor [Medicago tru	0.924	0.982	0.533	6e-41
297789139	194	hypothetical protein ARALYDRAFT_920531 [	0.989	0.943	0.438	2e-33
397746433	230	bZIP5 [Tamarix hispida]	0.864	0.695	0.456	9e-33
357482509	157	Protein ABSCISIC ACID-INSENSITIVE [Medic	0.767	0.904	0.478	3e-31
297819638	180	bZIP transcription factor family protein	0.929	0.955	0.413	1e-30
297797619	184	hypothetical protein ARALYDRAFT_919930 [	0.940	0.945	0.434	2e-30

>gi|224127192|ref|XP_002320010.1| predicted protein [Populus trichocarpa] gi|222860783|gb|EEE98325.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/181 (66%), Positives = 142/181 (78%), Gaps = 6/181 (3%)

Query: 1   MLSACPAIF-SSEMMFGNPFPDFESEFTPWDLPDPFPAPNQSPIPAVSSSSSDEPNQI-- 57
           MLS   AIF S E M  NPF  FE+ FTPWD  DPF +  QSP P  SSS SD+ NQ   
Sbjct: 1   MLSTVSAIFPSVEPMASNPFQSFENGFTPWDCFDPFSSSPQSPKPVGSSSGSDKSNQAGQ 60

Query: 58  ---QTNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRME 114
               +NSNSGSD+PN   S+IDERKRRRM+SNRESARRSRMRKQKH+ENLRNQ+NRLR+E
Sbjct: 61  NPDNSNSNSGSDDPNPQASLIDERKRRRMVSNRESARRSRMRKQKHVENLRNQVNRLRIE 120

Query: 115 NRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVTSAWPCNSA 174
           NREL+NRLRF L+H   VRTD DRLRSE++ LR++LS+IRQIL+ RQLQ++TSAWPCN+ 
Sbjct: 121 NRELTNRLRFVLYHSHGVRTDYDRLRSEYSTLRKKLSDIRQILMMRQLQELTSAWPCNNM 180

Query: 175 V 175
           +
Sbjct: 181 I 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585781|ref|XP_002533570.1| Ocs element-binding factor, putative [Ricinus communis] gi|223526547|gb|EEF28805.1| Ocs element-binding factor, putative [Ricinus communis]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/201 (63%), Positives = 146/201 (72%), Gaps = 16/201 (7%)

Query: 1   MLSACPAIF-SSEMMFGNPFPDFESEFTPWDLPDPFPAPN-----QSPIPAVSSSSSDEP 54
           MLS   A F S + M GNPF  FES FTPWD    F   N      S   A S+S S+EP
Sbjct: 1   MLSTVSASFLSPDSMIGNPFASFESGFTPWDDCSQFFENNLDSQYSSTKAAGSTSGSEEP 60

Query: 55  NQ------IQTNSNSGSD-EPNQ--TVSVIDERKRRRMISNRESARRSRMRKQKHLENLR 105
           N+         NSNS SD EPNQ    SVIDERKRRRMISNRESARRSRMRKQKHLENLR
Sbjct: 61  NEPNRSDPTPANSNSSSDQEPNQRTVASVIDERKRRRMISNRESARRSRMRKQKHLENLR 120

Query: 106 NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQV 165
           NQ+NRLR+ENRE++NRLRF L+H Q VR +ND+LRSEH++LR++LS IRQIL++RQLQQ 
Sbjct: 121 NQVNRLRVENREMTNRLRFVLYHWQSVRRENDQLRSEHSMLRQKLSNIRQILMFRQLQQF 180

Query: 166 TSAWPCNSAVTNEQT-SSLIT 185
           TSAWPCN+ VT EQ   SLIT
Sbjct: 181 TSAWPCNNTVTTEQIPPSLIT 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825147|emb|CAN62264.1| hypothetical protein VITISV_018458 [Vitis vinifera]

 Score =  208 bits (529), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 117/199 (58%), Positives = 141/199 (70%), Gaps = 16/199 (8%)

Query: 3   SACPAIFSSEMMFGNPFPDFESEFTPWDLPDPFPA-PNQSPI------------PAVSSS 49
           S+ P + SSE M  +PFP FE  FTPWD  + F    +Q P+            P  S+S
Sbjct: 60  SSFPVMMSSETMLVSPFPSFEGGFTPWDSQELFSIFQSQEPVLSNSGSDESNRKPVNSNS 119

Query: 50  SSDEPNQIQTNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLN 109
            SD PN+   +SNSGSD PN+  S  +ERKRRRMISNRESARRSRMRKQKH+ENLRNQLN
Sbjct: 120 GSDGPNRKPLHSNSGSDGPNREDSAAEERKRRRMISNRESARRSRMRKQKHIENLRNQLN 179

Query: 110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQ-QVTSA 168
           +LR++NREL+NRLR   +H   V +DN +LRSE  ILRR+LSE RQIL++RQLQ Q++SA
Sbjct: 180 QLRIQNRELTNRLRSFTYHSHLVDSDNVQLRSEAIILRRKLSEFRQILVFRQLQRQISSA 239

Query: 169 WPCNSAVT--NEQTSSLIT 185
           WPCNS  T  NEQT SLIT
Sbjct: 240 WPCNSVTTSVNEQTPSLIT 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097230|ref|XP_002310886.1| predicted protein [Populus trichocarpa] gi|222853789|gb|EEE91336.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 101/177 (57%), Positives = 121/177 (68%), Gaps = 27/177 (15%)

Query: 1   MLSACPAIFS-SEMMFGNPFPDFESEFTPWDLPDPFPAPNQSPIPAVSSSSSDEPNQIQT 59
           MLS   A +   E M  NPF  FE+ FTPWD  DPFP+  QSP P  SSS          
Sbjct: 1   MLSTVSATYPLVEPMLDNPFQFFENGFTPWDCFDPFPSAPQSPKPFGSSS---------- 50

Query: 60  NSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELS 119
                           DERKRRRM+SNRESARRSRMRKQKH++NLRNQ+NRLR+ENREL+
Sbjct: 51  ----------------DERKRRRMVSNRESARRSRMRKQKHMDNLRNQVNRLRVENRELT 94

Query: 120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVTSAWPCNSAVT 176
           NRLR  L+HC  VRT+ND LRSE+++LR++LSE  QIL+ RQLQQ TSAWPCN+ ++
Sbjct: 95  NRLRIVLYHCHSVRTENDWLRSEYSMLRKKLSETSQILMMRQLQQFTSAWPCNNIIS 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476543|ref|XP_003608557.1| Ocs element-binding factor [Medicago truncatula] gi|355509612|gb|AES90754.1| Ocs element-binding factor [Medicago truncatula]

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 117/178 (65%), Gaps = 7/178 (3%)

Query: 1   MLSACPAIFSSEMMFGNPFPDFESEFTPWDLPDPFPAPNQ--SPIPAVSSSSSDEPNQIQ 58
           MLS  P    S+ +  NPF  F   F  WD  D F    +  SP    SSS SDEPNQ  
Sbjct: 1   MLSTLPP---SDPLLDNPFSAFHGGFPQWDFHDLFSDDIKPTSPKTITSSSGSDEPNQPH 57

Query: 59  TNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENREL 118
                 SDEPN    V+DERKRRRMISNRESARRSRMRKQ+H+ENLRNQLN+ RMENRE+
Sbjct: 58  DKRKPDSDEPNH--GVVDERKRRRMISNRESARRSRMRKQRHVENLRNQLNKCRMENREM 115

Query: 119 SNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVTSAWPCNSAVT 176
            NRL+F L H  R+RT+N+ LRSE T+L +R++   QIL+ +Q Q  ++AW CN+ + 
Sbjct: 116 KNRLQFILFHLNRIRTENEWLRSERTVLNQRINNFTQILVCQQFQPFSTAWTCNTTMV 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297789139|ref|XP_002862568.1| hypothetical protein ARALYDRAFT_920531 [Arabidopsis lyrata subsp. lyrata] gi|297308173|gb|EFH38826.1| hypothetical protein ARALYDRAFT_920531 [Arabidopsis lyrata subsp. lyrata]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 119/194 (61%), Gaps = 11/194 (5%)

Query: 2   LSACPAIFSSEMMFGNPFPDFESEFTPWDLPDPFPAPNQ--SPIPAVSSSSSDEPNQIQT 59
           +S    +FSSE +F N  P  E+ FTPWD  D F   N   SP+          P+QIQ 
Sbjct: 1   MSTFSPVFSSEPVFANHVPALETGFTPWDASDLFSIFNSPVSPMEMNPGLEKTNPSQIQN 60

Query: 60  NSNSG---SDEPNQTVSV--IDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRME 114
            S S     D+P        +DER+++R +SNR+SA+RSR++KQKHLE++R +LN+L++E
Sbjct: 61  QSYSNPGLKDKPLDCTGSNDVDERRKKRKLSNRKSAQRSRIKKQKHLEDVRIELNKLKIE 120

Query: 115 NRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQ--VTSAWPC- 171
           NREL NRLR  L+HCQR + +ND LR EH +L  +L  +RQ L+ RQ+QQ    + W C 
Sbjct: 121 NRELENRLRHVLYHCQREQMENDSLRLEHRVLHEKLLNLRQALVMRQIQQSSTCATWSCI 180

Query: 172 -NSAVTNEQTSSLI 184
            ++ VT  Q  S+I
Sbjct: 181 NSTVVTVLQNPSII 194

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397746433|gb|AFO63284.1| bZIP5 [Tamarix hispida]

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 113/208 (54%), Gaps = 48/208 (23%)

Query: 1   MLSACPAIFSSEMMFGN-PFPDFESEFTPWDLPD-PFPA----------------PNQSP 42
           MLS  PA    + M GN PFPD    +  WD P  P P                 PN S 
Sbjct: 1   MLSTIPANILPDTMLGNYPFPDSGYGYCAWDFPACPSPYLHEPTDMQPNSLELDEPNHSH 60

Query: 43  IPAVSSS---------------------------SSDEP---NQIQTNSNSGSDEPNQTV 72
           I + SSS                            SDEP   N    NS+SG  +P +  
Sbjct: 61  IDSNSSSDLSRYHAGSDLTSDSPNVNQNSVSSAAGSDEPPDQNHNSPNSSSGCKQPIRPA 120

Query: 73  SVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRV 132
           S +DERKR+RM SNRESARRSRMRKQKH+ENLRN+LN+L+ EN E + RLRF +H C  V
Sbjct: 121 SSMDERKRKRMESNRESARRSRMRKQKHVENLRNRLNQLKSENHERTTRLRFMIHQCHLV 180

Query: 133 RTDNDRLRSEHTILRRRLSEIRQILLYR 160
           R DNDRLR+EH I +RRL+EI QIL +R
Sbjct: 181 RRDNDRLRAEHVIYQRRLTEICQILQFR 208

Source: Tamarix hispida

Species: Tamarix hispida

Genus: Tamarix

Family: Tamaricaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482509|ref|XP_003611541.1| Protein ABSCISIC ACID-INSENSITIVE [Medicago truncatula] gi|355512876|gb|AES94499.1| Protein ABSCISIC ACID-INSENSITIVE [Medicago truncatula]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 107/165 (64%), Gaps = 23/165 (13%)

Query: 14  MFGNPFPDFESEFTPWDLPDPFPAPNQSPIPAVSSSSSDEPNQIQTNSNSGSDEPNQTVS 73
           ++ + F   +   TPWD  +       SPI         +P   +  S+SGS EPN+   
Sbjct: 5   LYSSDFTALDKSLTPWDFSNIL-----SPI---------QPTSPKLTSSSGSGEPNEKPV 50

Query: 74  V------IDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALH 127
           +      +++RKRRRMISNRESARRSRMRKQ+HLENLRNQ+NR R+ENREL+N L+F L+
Sbjct: 51  MDGSNRNMEDRKRRRMISNRESARRSRMRKQRHLENLRNQVNRFRVENRELNNGLQFLLY 110

Query: 128 HCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVTSAWPCN 172
            C RVRT+N+ LR E T+L ++LS I Q +++   Q  +SAWPCN
Sbjct: 111 QCNRVRTENEWLRLERTMLGQKLSNISQNMVF---QPFSSAWPCN 152

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819638|ref|XP_002877702.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297323540|gb|EFH53961.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 119/191 (62%), Gaps = 19/191 (9%)

Query: 1   MLSACPAIFSSEMMFGNPFPDFESEFTPWDLPDPFPAPNQS--PIPAVSSSSSDEPNQIQ 58
           M+S    +FS+E+      P FE+ FTPWD+   F   + S   IP VS+      NQI 
Sbjct: 1   MMSTISPVFSTEL---TSVPAFETGFTPWDISHLFSVFDSSMDQIP-VSAHDYGSVNQIS 56

Query: 59  TNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENREL 118
           T+               DERK++R +SNRESA+RSR +KQKHLE +  QLN+L+ +N+EL
Sbjct: 57  TDV--------ALTESTDERKKKRKLSNRESAKRSREKKQKHLEEMSMQLNQLKTQNQEL 108

Query: 119 SNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVT---SAWPC--NS 173
           +N+LR+ L+H Q+ + +NDRLR EH  L+ +L  IRQ+L++RQ+++ +   S WPC  ++
Sbjct: 109 TNQLRYVLYHYQQTKMENDRLRMEHRSLQDKLLNIRQVLMFRQIERSSLNCSTWPCSNST 168

Query: 174 AVTNEQTSSLI 184
            VT +Q  S++
Sbjct: 169 VVTVQQDPSIM 179

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797619|ref|XP_002866694.1| hypothetical protein ARALYDRAFT_919930 [Arabidopsis lyrata subsp. lyrata] gi|297312529|gb|EFH42953.1| hypothetical protein ARALYDRAFT_919930 [Arabidopsis lyrata subsp. lyrata]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 112/184 (60%), Gaps = 10/184 (5%)

Query: 2   LSACPAIFSSEMMFGNPFPDFESEFTPWDLPDPFPAPNQ--SPIPAVSSSSSDEPNQIQT 59
           +S    +FSSE +F N  P  E+ FTPWD  D F   +   SP+          P+QIQ 
Sbjct: 1   MSTISPVFSSEPVFANHVPALETGFTPWDASDLFSFFDSPVSPMEMNPGLEKTNPSQIQN 60

Query: 60  NSNSG---SDEPNQTVSV--IDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRME 114
            S S     D+P        +DER+++R +SNR+SA+RSR++KQKHLE++R +LN+L++E
Sbjct: 61  QSYSNPGLKDKPLDCTGSNDVDERRKKRKLSNRKSAQRSRIKKQKHLEDVRIELNKLKIE 120

Query: 115 NRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQ--VTSAWPC- 171
           NREL NRLR  L+HCQR + +ND LR    +L  +L  +RQ L+ RQ+QQ    + W C 
Sbjct: 121 NRELENRLRHVLYHCQREQMENDSLRLGLRVLHEKLLNLRQALVMRQIQQSSTCATWSCI 180

Query: 172 NSAV 175
           NS V
Sbjct: 181 NSLV 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2097315	156	bZIP5 "AT3G49760" [Arabidopsis	0.756	0.897	0.363	5.3e-17
TAIR|locus:2009932	196	bZIP58 "AT1G13600" [Arabidopsi	0.237	0.224	0.727	6.2e-14
TAIR|locus:2137539	305	bZIP7 "AT4G37730" [Arabidopsis	0.616	0.373	0.391	1.9e-13
TAIR|locus:2059211	227	bZIP6 "AT2G22850" [Arabidopsis	0.594	0.484	0.371	5e-12
TAIR|locus:2053124	171	bZIP2 "AT2G18160" [Arabidopsis	0.227	0.245	0.642	1.2e-10
TAIR|locus:2092595	173	bZIP42 "AT3G30530" [Arabidopsi	0.421	0.450	0.471	1.2e-10
TAIR|locus:2827461	166	bZIP48 "AT2G04038" [Arabidopsi	0.237	0.265	0.644	2e-10
TAIR|locus:2018411	173	bZIP44 "AT1G75390" [Arabidopsi	0.486	0.520	0.388	2.5e-10
TAIR|locus:2143191	186	bZIP3 "AT5G15830" [Arabidopsis	0.227	0.225	0.619	8.4e-10
TAIR|locus:2166650	165	bZIP43 "AT5G38800" [Arabidopsi	0.659	0.739	0.309	3.6e-09

TAIR|locus:2097315 bZIP5 "AT3G49760" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 56/154 (36%), Positives = 74/154 (48%)

Query:     1 MLSACPAIFSSEM-MFGNPFPDFESEFTPWDLPDPFPAPNQ--SPIPAVXXXXXDEPNQI 57
             M+S    +FS+E  +  +  P FE+ FTPWD+   F   +    P P V        NQI
Sbjct:     1 MMSTISPVFSTEPGLLTSVLPAFETSFTPWDISHLFSVFDSLIDPKP-VSTHDYGSVNQI 59

Query:    58 QTNSNSGSD-EPNQTVSVIDERKRRRMISNRESARRSRMRKQKHXXXXXXXXXXXXXXXX 116
                   GSD  P       DERK++R +SNRESA+RSR +KQKH                
Sbjct:    60 ------GSDMSPTDNT---DERKKKRKLSNRESAKRSREKKQKHLEEMSIQLNQLKIQNQ 110

Query:   117 XXXXXXXFALHHCQRVRTDNDRLRSEHTILRRRL 150
                    + L+HCQR + +NDRL  EH IL  +L
Sbjct:   111 ELKNQLRYVLYHCQRTKMENDRLLMEHRILHDKL 144

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2009932 bZIP58 "AT1G13600" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
 Identities = 32/44 (72%), Positives = 38/44 (86%)

Query:    57 IQTNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKH 100
             + T++NS SDE +Q   VIDERK+RRMISNRESARRSRMRKQ+H
Sbjct:    65 LMTSNNSTSDEDHQQSMVIDERKQRRMISNRESARRSRMRKQRH 108

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2137539 bZIP7 "AT4G37730" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 47/120 (39%), Positives = 56/120 (46%)

Query:    39 NQSPIPAVXXXXXDEPNQIQTNSNSGSDEPNQT------VSVIDERKRRRMISNRESARR 92
             N  P         D+  Q+   +N GS E N          + DERKR+RM SNRESA+R
Sbjct:   152 NDLPCSQADEPDSDDTKQLTAITNFGSGENNHNRKKMIQPEMTDERKRKRMESNRESAKR 211

Query:    93 SRMRKQKHXXXXXXXXXXXXXXXXXXXXXXXFALHHCQRVRTDNDRLRSEHTILRRRLSE 152
             SRMRKQ H                         LH  QRV +DN+RL +E  ILR RLSE
Sbjct:   212 SRMRKQSHIDNLREQVNRLDLENRELGNRLRLVLHQLQRVNSDNNRLVTEQEILRLRLSE 271

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2059211 bZIP6 "AT2G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 42/113 (37%), Positives = 61/113 (53%)

Query:    43 IPAVXXXXXDEPN-QIQTNS-NSGSDEPNQTV-SVIDERKRRRMISNRESARRSRMRKQK 99
             +P+      D  N +I++N+ N   ++ N++V  V D+RKR+RM SNRESA+RSRMRKQ+
Sbjct:    91 VPSPQSDELDSKNTKIRSNATNHNRNKLNRSVLQVTDDRKRKRMESNRESAKRSRMRKQR 150

Query:   100 HXXXXXXXXXXXXXXXXXXXXXXXFALHHCQRVRTDNDRLRSEHTILRRRLSE 152
             H                         L++   + TDN++L SE  ILRRR  E
Sbjct:   151 HIDNLKDEANRLGLENRELANRLRIVLYNIALMCTDNNQLLSEQEILRRRFLE 203

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2053124 bZIP2 "AT2G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 27/42 (64%), Positives = 37/42 (88%)

Query:    59 TNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKH 100
             ++S+ G++ P+ +V  +DERKR+RM+SNRESARRSRMRKQKH
Sbjct:    12 SSSDGGNNNPSDSVVTVDERKRKRMLSNRESARRSRMRKQKH 53

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2092595 bZIP42 "AT3G30530" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 42/89 (47%), Positives = 54/89 (60%)

Query:    17 NPFPDFESEFTPWDLPDPFPAPNQSPIPAVXXXX-XDEPNQIQTNSN-SGSDEPN--QTV 72
             +P+P   S F P  +  PFP   Q+P          + P  +  +SN S SDE    QT 
Sbjct:    21 SPYP---SNF-P--ISTPFPTNGQNPYLLYGFQSPTNNPQSMSLSSNNSTSDEAEEQQTN 74

Query:    73 S-VIDERKRRRMISNRESARRSRMRKQKH 100
             + +I+ERK+RRMISNRESARRSRMRKQ+H
Sbjct:    75 NNIINERKQRRMISNRESARRSRMRKQRH 103

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2827461 bZIP48 "AT2G04038" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/45 (64%), Positives = 39/45 (86%)

Query:    57 IQTNSNSGSDEPN-QTVSVIDERKRRRMISNRESARRSRMRKQKH 100
             +  ++NS SDE + Q++ V+DERK+RRM+SNRESARRSRMRKQ+H
Sbjct:    52 LMISNNSTSDEDHHQSIMVLDERKQRRMLSNRESARRSRMRKQRH 96

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2018411 bZIP44 "AT1G75390" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/90 (38%), Positives = 44/90 (48%)

Query:    61 SNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKHXXXXXXXXXXXXXXXXXXXX 120
             +NSGS+   +   +IDERKR+R  SNRESARRSRMRKQKH                    
Sbjct:    24 ANSGSESDLRQRDLIDERKRKRKQSNRESARRSRMRKQKHLDDLTAQVTHLRKENAQIVA 83

Query:   121 XXXFALHHCQRVRTDNDRLRSEHTILRRRL 150
                    H   +  +ND LR++   L  RL
Sbjct:    84 GIAVTTQHYVTIEAENDILRAQVLELNHRL 113

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0009845 "seed germination" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2143191 bZIP3 "AT5G15830" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 26/42 (61%), Positives = 37/42 (88%)

Query:    59 TNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQKH 100
             +N+++ SD+  + + VI+ERK+RRM+SNRESARRSRMRKQ+H
Sbjct:    55 SNNSTTSDDATEEIFVINERKQRRMVSNRESARRSRMRKQRH 96

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2166650 bZIP43 "AT5G38800" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 39/126 (30%), Positives = 60/126 (47%)

Query:    31 LPDPFPAPNQSPIPAVXXXXXDEPNQIQT---NSNSGSDEPNQT-VSVIDERKRRRMISN 86
             +P   P   Q+P P          +Q  +   ++NS SDE  +    +I+ERK++R ISN
Sbjct:    21 IPTSSPFCGQNPNPFFSFETGVNTSQFMSLISSNNSTSDEAEENHKEIINERKQKRKISN 80

Query:    87 RESARRSRMRKQKHXXXXXXXXXXXXXXXXXXXXXXXFALHHCQRVRTDNDRLRSEHTIL 146
             RESARRSRMRKQ+                          L   ++V  +N +L+ E T L
Sbjct:    81 RESARRSRMRKQRQVDELWSQVMWLRDENHQLLRKLNCVLESQEKVIEENVQLKEETTEL 140

Query:   147 RRRLSE 152
             ++ +S+
Sbjct:   141 KQMISD 146

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIV000033 hypothetical protein (197 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
smart00338	65	smart00338, BRLZ, basic region leucin zipper	8e-13
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	2e-06
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	4e-05
PLN02939	977	PLN02939, PLN02939, transferase, transferring glyc	0.004

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 60.3 bits (147), Expect = 8e-13
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 76  DERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTD 135
           DE++RRR   NRE+ARRSR RK+  +E L  ++ +L  EN  L   +       ++++++
Sbjct: 3   DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62

Query: 136 NDR 138
            + 
Sbjct: 63  LEE 65

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 21/59 (35%), Positives = 37/59 (62%)

Query: 78  RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDN 136
           ++ RR   NRE+ARRSR+RK+ ++E L  ++  L  EN+ L + L      C +++++N
Sbjct: 5   KRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLKSEN 63

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 76  DERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLR 123
           DE + RR   N E+ARRSR +K++  E L  ++  L  EN +L  ++ 
Sbjct: 3   DEYRDRRR-RNNEAARRSREKKKQREEELEERVKELEEENAQLRQKVE 49

Length = 54

>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 37  APNQSPIPAVSSSSSDEPNQIQTNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMR 96
           AP Q    +   S++DE  Q++  S     E  Q  S   +    R    R+ A  +   
Sbjct: 55  APKQRSSNSKLQSNTDENGQLENTSLRTVMELPQK-STSSDDDHNRASMQRDEAIAAIDN 113

Query: 97  KQKHLENLRNQLNRLRME-----------NRELSNRLR-FALHHCQRVRTDNDRLRSEHT 144
           +Q+       QL+  ++E           N  L N+ R  AL   +++ T+ + L+ +  
Sbjct: 114 EQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKIN 173

Query: 145 ILRRRLSE 152
           IL  RLSE
Sbjct: 174 ILEMRLSE 181

Length = 977

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.53
smart00338	65	BRLZ basic region leucin zipper.	99.46
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.41
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.35
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.17
KOG3584	348	consensus cAMP response element binding protein an	99.04
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	98.89
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.05
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.95
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.91
KOG3119	269	consensus Basic region leucine zipper transcriptio	97.82
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.42
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	97.13
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	96.98
PRK13169	110	DNA replication intiation control protein YabA; Re	96.91
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.89
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.7
PRK15422	79	septal ring assembly protein ZapB; Provisional	96.68
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	96.54
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.51
COG4467	114	Regulator of replication initiation timing [Replic	96.29
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.2
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	96.19
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	96.19
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	96.08
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.02
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	95.93
PRK10884	206	SH3 domain-containing protein; Provisional	95.91
PRK13169	110	DNA replication intiation control protein YabA; Re	95.8
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	95.55
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.31
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.05
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	94.74
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.71
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	94.49
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.37
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	94.36
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.21
PRK11637	428	AmiB activator; Provisional	94.05
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	93.99
PRK10884	206	SH3 domain-containing protein; Provisional	93.99
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.8
PRK15422	79	septal ring assembly protein ZapB; Provisional	93.73
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	93.6
KOG3119	269	consensus Basic region leucine zipper transcriptio	93.53
COG4026	290	Uncharacterized protein containing TOPRIM domain,	93.36
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	93.16
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	93.15
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	93.13
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	93.05
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.04
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	92.82
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	92.73
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.71
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.57
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.57
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	92.52
PRK04406	75	hypothetical protein; Provisional	92.47
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	92.34
smart00338	65	BRLZ basic region leucin zipper.	92.29
PRK02119	73	hypothetical protein; Provisional	92.22
smart00340	44	HALZ homeobox associated leucin zipper.	92.01
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	91.94
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	91.93
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	91.81
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	91.77
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.72
COG4467	114	Regulator of replication initiation timing [Replic	91.67
PRK04325	74	hypothetical protein; Provisional	91.54
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	91.36
PRK11637	428	AmiB activator; Provisional	91.34
PRK02793	72	phi X174 lysis protein; Provisional	91.26
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	91.15
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	91.03
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	90.76
PRK00295	68	hypothetical protein; Provisional	90.75
PRK09039	343	hypothetical protein; Validated	90.73
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	90.7
KOG3650	120	consensus Predicted coiled-coil protein [General f	90.6
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	90.56
PRK00846	77	hypothetical protein; Provisional	90.32
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	90.3
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.16
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	90.05
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	90.03
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	90.01
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	89.9
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	89.79
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	89.72
KOG4571	294	consensus Activating transcription factor 4 [Trans	89.65
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	89.61
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.56
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	89.34
PF15294	278	Leu_zip: Leucine zipper	89.23
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.07
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	88.71
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	88.69
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	88.53
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	88.22
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	88.17
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	88.11
PRK00888	105	ftsB cell division protein FtsB; Reviewed	88.11
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	88.01
PRK13922	276	rod shape-determining protein MreC; Provisional	87.96
PF14662	193	CCDC155: Coiled-coil region of CCDC155	87.93
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	87.74
PF10186	302	Atg14: UV radiation resistance protein and autopha	87.63
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	87.61
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	87.59
KOG4797	123	consensus Transcriptional regulator [Transcription	87.52
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	87.46
PRK00736	68	hypothetical protein; Provisional	87.26
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	87.25
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	86.55
COG4942	420	Membrane-bound metallopeptidase [Cell division and	86.39
KOG1962	216	consensus B-cell receptor-associated protein and r	86.18
PF15058	200	Speriolin_N: Speriolin N terminus	86.08
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	85.69
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	85.42
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	85.3
COG4026	290	Uncharacterized protein containing TOPRIM domain,	85.29
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	85.2
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	85.16
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	85.1
KOG1318	411	consensus Helix loop helix transcription factor EB	85.1
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	85.08
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	85.07
PHA02562	562	46 endonuclease subunit; Provisional	84.86
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	84.8
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	84.8
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	84.8
PRK00888	105	ftsB cell division protein FtsB; Reviewed	84.8
PF10506	67	MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for U	84.56
PRK10803	263	tol-pal system protein YbgF; Provisional	84.37
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	84.02
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	83.95
PRK02119	73	hypothetical protein; Provisional	83.68
PF04999	97	FtsL: Cell division protein FtsL; InterPro: IPR007	83.46
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	83.37
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	83.03
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	82.96
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	82.95
PF10482	120	CtIP_N: Tumour-suppressor protein CtIP N-terminal	82.8
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	82.5
PF04899	70	MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 Th	82.45
KOG2077	832	consensus JNK/SAPK-associated protein-1 [Signal tr	82.26
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	82.12
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	82.09
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	81.86
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	81.84
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	81.8
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	81.51
PF15233	134	SYCE1: Synaptonemal complex central element protei	81.45
PRK09039	343	hypothetical protein; Validated	81.43
KOG1962	216	consensus B-cell receptor-associated protein and r	81.42
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	81.4
PRK02793	72	phi X174 lysis protein; Provisional	81.26
PRK10803	263	tol-pal system protein YbgF; Provisional	81.21
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	81.13
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	81.1
PF05812	118	Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro:	81.07
PF13935	139	Ead_Ea22: Ead/Ea22-like protein	80.69
PF07558	46	Shugoshin_N: Shugoshin N-terminal coiled-coil regi	80.57
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	80.55
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	80.49
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	80.49
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	80.23
PF00038	312	Filament: Intermediate filament protein; InterPro:	80.05

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.53  E-value=3.4e-13  Score=116.78  Aligned_cols=85  Identities=28%  Similarity=0.375  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus        74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      .-|||-.|||++||.+|+.+|.|||+++++++.+|.+|..||+.|+.+++.|+...+.|..+|..|+.++..|++.|..+
T Consensus        65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~  144 (292)
T KOG4005|consen   65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL  144 (292)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            34788899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHH
Q 029952          154 RQILL  158 (185)
Q Consensus       154 ~~il~  158 (185)
                      .+.-.
T Consensus       145 ~~~~~  149 (292)
T KOG4005|consen  145 KQQQQ  149 (292)
T ss_pred             HHHHH
Confidence            87543

>smart00338 BRLZ basic region leucin zipper

Probab=99.46  E-value=5.7e-13  Score=92.83  Aligned_cols=62  Identities=34%  Similarity=0.543  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           75 IDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDN  136 (185)
Q Consensus        75 ~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN  136 (185)
                      .|+|+.+|+++||+||++||.||+.|+.+|+.+|..|+.+|..|..++..|..++..|..+|
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999999999999998876666555554443

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.41  E-value=1.9e-12  Score=90.05  Aligned_cols=61  Identities=36%  Similarity=0.579  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           76 DERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDN  136 (185)
Q Consensus        76 deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN  136 (185)
                      +.++.+|+++||+||+++|.||+.|+++|+.+|..|..+|..|..++..|...+..|..+|
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4567899999999999999999999999999999999999999999998888888888777

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.35  E-value=4.5e-12  Score=119.39  Aligned_cols=98  Identities=23%  Similarity=0.321  Sum_probs=84.2

Q ss_pred             CCCcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 029952           69 NQTVSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHT----  144 (185)
Q Consensus        69 ~~~~~~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~----  144 (185)
                      ++..+..--||..|||+|||||..||+|||+|+..||.++..|.+||+.|+.++..|+.++..++.||..|+--..    
T Consensus       272 ~~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~  351 (655)
T KOG4343|consen  272 NVGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRN  351 (655)
T ss_pred             CCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCcccc
Confidence            3344556667888999999999999999999999999999999999999999999999999999999999964333    


Q ss_pred             -HHHHHHHHHHHHHHHHHhhccC
Q 029952          145 -ILRRRLSEIRQILLYRQLQQVT  166 (185)
Q Consensus       145 -~Lr~rL~~l~~il~~~~~~~~~  166 (185)
                       .-++++-++.-+|+|+.+.-.+
T Consensus       352 qKk~Rkvvaimv~maFi~f~~~~  374 (655)
T KOG4343|consen  352 QKKKRKVVAIMVVMAFIIFNYGS  374 (655)
T ss_pred             cccchhhhhHHHHHHHHHHhccC
Confidence             2357888999999998777554

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.17  E-value=2.6e-10  Score=77.19  Aligned_cols=51  Identities=37%  Similarity=0.563  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           76 DERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus        76 deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      |+++.||+ +||+||++||.||+.++.+|+.+|..|..+|..|..++..|..
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56777888 9999999999999999999999999999999999888876653

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.04  E-value=4.7e-10  Score=99.63  Aligned_cols=54  Identities=26%  Similarity=0.406  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           77 ERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQ  130 (185)
Q Consensus        77 eRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~  130 (185)
                      -||+-|+++|||+||.+|+|||+|+..||.+|+.|+.+|..|-++|..|++-|.
T Consensus       290 rKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc  343 (348)
T KOG3584|consen  290 RKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC  343 (348)
T ss_pred             hHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence            345679999999999999999999999999999999999999999988887553

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=98.89  E-value=2.7e-09  Score=99.30  Aligned_cols=72  Identities=24%  Similarity=0.362  Sum_probs=60.1

Q ss_pred             chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           73 SVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS  151 (185)
Q Consensus        73 ~~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~  151 (185)
                      +...-||.||||+|++||+.||+|||.|++.||.+|.....+|++|.+++       +.|+.+|..|-+++..|...+.
T Consensus       246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV-------~~Le~~N~sLl~qL~klQt~v~  317 (472)
T KOG0709|consen  246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKV-------EELELSNRSLLAQLKKLQTLVI  317 (472)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHH-------HHHhhccHHHHHHHHHHHHHHh
Confidence            33444577999999999999999999999999999999999999998876       4566677777777777766554

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.05  E-value=6e-08  Score=72.15  Aligned_cols=56  Identities=29%  Similarity=0.444  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC  129 (185)
Q Consensus        74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~  129 (185)
                      ..+-|..||.++||.+|+.+|.||..++.+|+.++..|+.+...|..++..+...+
T Consensus        26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~   81 (92)
T PF03131_consen   26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER   81 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34457789999999999999999999999999999888777766666555444433

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.95  E-value=3.6e-05  Score=67.79  Aligned_cols=50  Identities=28%  Similarity=0.496  Sum_probs=43.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC  129 (185)
Q Consensus        80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~  129 (185)
                      .|..++||++|.+||.||.+++..||.+|..|..+|..|...+..|+++.
T Consensus       208 eRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v  257 (279)
T KOG0837|consen  208 ERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQV  257 (279)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence            35578999999999999999999999999999999999988776555544

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.91  E-value=8.4e-05  Score=66.26  Aligned_cols=55  Identities=27%  Similarity=0.315  Sum_probs=43.3

Q ss_pred             hhHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           74 VIDERKR-RRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHH  128 (185)
Q Consensus        74 ~~deRk~-RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~  128 (185)
                      ..++++. |..+.|..+|-|.|+||++..+.|+-++..|+++|.+|+.+++.+..+
T Consensus       222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE  277 (294)
T KOG4571|consen  222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELERE  277 (294)
T ss_pred             CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455554 446777778999999999999999999999999998888877654443

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=97.82  E-value=0.00039  Score=60.97  Aligned_cols=50  Identities=22%  Similarity=0.387  Sum_probs=37.9

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLR  123 (185)
Q Consensus        74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~  123 (185)
                      ..+.+-..|+.+|=++|||||.+.+...+++..+|..|+.||..|+.++.
T Consensus       190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~  239 (269)
T KOG3119|consen  190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVE  239 (269)
T ss_pred             cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555666899999999999999998888888887776666655543

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.42  E-value=0.0019  Score=51.79  Aligned_cols=67  Identities=21%  Similarity=0.427  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           77 ERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI  156 (185)
Q Consensus        77 eRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i  156 (185)
                      -|.+||-++||-.|.-+|-|+-.+-.+||.+-..|..+.              +.|..||.+++.|...|+.+...+..-
T Consensus        52 lKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv--------------~~L~~e~s~~~~E~da~k~k~e~l~~~  117 (135)
T KOG4196|consen   52 LKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQV--------------EKLKEENSRLRRELDAYKSKYEALQNS  117 (135)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345788999999999999999988888776665554443              444567888888888888888776554


Q ss_pred             H
Q 029952          157 L  157 (185)
Q Consensus       157 l  157 (185)
                      .
T Consensus       118 ~  118 (135)
T KOG4196|consen  118 A  118 (135)
T ss_pred             h
Confidence            3

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=97.13  E-value=0.0037  Score=48.29  Aligned_cols=53  Identities=32%  Similarity=0.423  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus       103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      +|=.++..|+..-..|..++..|+..+..|..||..|+.|+..||.+|..+.+
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45566777777777788888888888889999999999999999999988876

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.98  E-value=0.0072  Score=44.12  Aligned_cols=55  Identities=22%  Similarity=0.388  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      -+.-|.-+|+.|+.+|..|..+.+.+.+....|+.||.+|+.+......||.+|-
T Consensus        19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL   73 (79)
T COG3074          19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL   73 (79)
T ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556778999999999999999999999999999999999999999999988764

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.91  E-value=0.0074  Score=46.97  Aligned_cols=53  Identities=25%  Similarity=0.298  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus       103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      +|=.++..|+..-..|..++..|+..+..|..||..|+.|+..||.+|..+.+
T Consensus         5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~   57 (110)
T PRK13169          5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45556777777777778888888888888888999999999999999887643

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.89  E-value=0.021  Score=41.23  Aligned_cols=58  Identities=26%  Similarity=0.436  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNR-------LRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL  157 (185)
Q Consensus       100 ~l~eLe~qV~~-------L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il  157 (185)
                      .++.|+.+|..       |+.++.+|+.++..+......|..||.+|+.+......||..|-.-|
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34555555554       55555555555555555677777777777777777777777665433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.70  E-value=0.045  Score=39.52  Aligned_cols=49  Identities=12%  Similarity=0.169  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR  149 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r  149 (185)
                      +.-|+.++..|+.+|..|..+...|......|..|-......+..|=+|
T Consensus        20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k   68 (72)
T PF06005_consen   20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444455555555555555555555555555554444444444444333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=96.68  E-value=0.016  Score=42.80  Aligned_cols=57  Identities=19%  Similarity=0.344  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI  156 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i  156 (185)
                      -+.-|.-+|+.|+.+|..|..+++.+......|..||..|+.+......||..|---
T Consensus        19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk   75 (79)
T PRK15422         19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   75 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445567788888888888888888888888889999999999999999998877543

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=96.54  E-value=0.0053  Score=59.59  Aligned_cols=64  Identities=30%  Similarity=0.419  Sum_probs=51.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL  157 (185)
Q Consensus        80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il  157 (185)
                      .||+=+||.||+++|+||-.-+.+||.+|..|+.+-.+|..+-              ..+...+..++++|..|.+-+
T Consensus       492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er--------------~~~d~~L~~~kqqls~L~~~V  555 (604)
T KOG3863|consen  492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER--------------DELDSTLGVMKQQLSELYQEV  555 (604)
T ss_pred             cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence            3678899999999999999999999999999999888876543              344555666777777776543

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.51  E-value=0.048  Score=38.93  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY  159 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~  159 (185)
                      +..|+.+|..|=.....|+.++..|.++...+..|+..|...+..=+.|++.|-.-|.-
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~   60 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA   60 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            56677888888777777888888888888888888888888888888888777655543

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=96.29  E-value=0.023  Score=44.45  Aligned_cols=47  Identities=30%  Similarity=0.321  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          106 NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE  152 (185)
Q Consensus       106 ~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~  152 (185)
                      .+|..|+...-.|..+++.+++++..+..||..|+-|+..||.||+.
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            45666666666778888888999999999999999999999999998

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.20  E-value=0.053  Score=44.90  Aligned_cols=60  Identities=18%  Similarity=0.275  Sum_probs=51.0

Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRN---QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY  159 (185)
Q Consensus       100 ~l~eLe~---qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~  159 (185)
                      ++..|..   ....++.||..|..++..|..++..|+.||..|..++..+......|-.||..
T Consensus        88 fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R  150 (161)
T TIGR02894        88 FLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR  150 (161)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443   57788899999999999999999999999999999999999999999888864

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=96.19  E-value=0.025  Score=37.48  Aligned_cols=42  Identities=19%  Similarity=0.330  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS  151 (185)
Q Consensus       110 ~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~  151 (185)
                      +|+.+...|+...+.|...+..|..||..|++++..|+.++.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            466677777777788888888888888888888888887763

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=96.19  E-value=0.086  Score=38.30  Aligned_cols=60  Identities=28%  Similarity=0.400  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQR--------VRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~--------L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      +.+.+.+++.|+.||-.|+-+|-.|.+++..        +..+|-.|+.++..|+..|......|...
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a   69 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEA   69 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999887774        58899999999999999999998887654

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=96.08  E-value=0.092  Score=37.61  Aligned_cols=57  Identities=25%  Similarity=0.404  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus        98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      +.+++.+..++.....+|..|..+-+....++.....+|..|++|+..|++.|....
T Consensus        11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r   67 (69)
T PF14197_consen   11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR   67 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            467788889999999999999999988888999999999999999999998876543

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.02  E-value=0.081  Score=37.77  Aligned_cols=57  Identities=25%  Similarity=0.319  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      ..++.|-.....|+.+|..|+.++..+..+-..|...|..=+..+..+=.||.+|++
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq   63 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            467888889999999999999999999999999999999999999999999988875

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=95.93  E-value=0.054  Score=41.84  Aligned_cols=50  Identities=32%  Similarity=0.448  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR  148 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~  148 (185)
                      ..+.+|+.++..|-.+-..|+..+..|.++.+.|..||..||..+.++..
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46889999999999999999999999999999999999999999988765

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.91  E-value=0.15  Score=43.35  Aligned_cols=10  Identities=50%  Similarity=0.757  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 029952          111 LRMENRELSN  120 (185)
Q Consensus       111 L~~eN~~L~~  120 (185)
                      |+.+|++|..
T Consensus       137 L~~~n~~L~~  146 (206)
T PRK10884        137 LKEENQKLKN  146 (206)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=95.80  E-value=0.063  Score=41.80  Aligned_cols=49  Identities=29%  Similarity=0.355  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR  147 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr  147 (185)
                      ..+..|+.++..|-.+-..|+..+..+.++.+.|..||..||..+.++.
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~   56 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE   56 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4678999999999999999999999999999999999999999999873

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=95.55  E-value=0.34  Score=42.92  Aligned_cols=56  Identities=18%  Similarity=0.256  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          105 RNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus       105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      ..+.+.++.+...|..+...|..++..|.+.|..|..+..+|..+|+.+++-|+-.
T Consensus        89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~  144 (292)
T KOG4005|consen   89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL  144 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            35677788888888888888888888888888888888888888888888887766

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.31  E-value=0.16  Score=43.29  Aligned_cols=60  Identities=22%  Similarity=0.289  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      ..+|-..|++|+.-|++|..++..|...+..++..|++|..++..|+..+..+.+.+.+.
T Consensus         3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a   62 (193)
T PF14662_consen    3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA   62 (193)
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788899999999999999999999999999999999999999999999998888765

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.05  E-value=0.79  Score=44.45  Aligned_cols=82  Identities=12%  Similarity=0.250  Sum_probs=68.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY  159 (185)
Q Consensus        80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~  159 (185)
                      +..+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|..+..+++.|+..|.+-+..
T Consensus       152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~  231 (546)
T PF07888_consen  152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKT  231 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466666777777777788888888888888888888998888888888899999999999999999999999887765


Q ss_pred             HH
Q 029952          160 RQ  161 (185)
Q Consensus       160 ~~  161 (185)
                      +.
T Consensus       232 l~  233 (546)
T PF07888_consen  232 LT  233 (546)
T ss_pred             HH
Confidence            53

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=94.74  E-value=0.053  Score=45.03  Aligned_cols=53  Identities=26%  Similarity=0.386  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      |+++|.+.++-=..|.-|..+|+    +-..|..++++||.|+.+|++.| .+.+.+.
T Consensus         2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~   54 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL-IVQEKLR   54 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH----------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence            78999999999999999999983    45678889999999999999988 6666554

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.71  E-value=1.1  Score=37.14  Aligned_cols=52  Identities=17%  Similarity=0.241  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL  150 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL  150 (185)
                      ..+.+|+..+......+..|..++..|.-++..++.....|..|..+|-.|+
T Consensus       130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  130 EKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444445554444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=94.49  E-value=0.42  Score=35.34  Aligned_cols=45  Identities=24%  Similarity=0.373  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus       110 ~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      .|..+-..|+..+..|..++..+..||..|+.|...|..-+++|.
T Consensus        20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm   64 (80)
T PF10224_consen   20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM   64 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555555555556666666666666677777777763

The exact function is unknown.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.37  E-value=2  Score=33.90  Aligned_cols=81  Identities=22%  Similarity=0.313  Sum_probs=63.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY  159 (185)
Q Consensus        80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~  159 (185)
                      ..|=...||..-....++...++.|...+..|+.++..+..++..+......+..++..+...+..++..+..+...+..
T Consensus        47 ~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~  126 (151)
T PF11559_consen   47 RDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ  126 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555667888888888888888888888888888888888888888888888888877777777777777776666655


Q ss_pred             H
Q 029952          160 R  160 (185)
Q Consensus       160 ~  160 (185)
                      +
T Consensus       127 ~  127 (151)
T PF11559_consen  127 R  127 (151)
T ss_pred             H
Confidence            4

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=94.36  E-value=0.33  Score=33.64  Aligned_cols=44  Identities=9%  Similarity=0.170  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhcc
Q 029952          122 LRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR--QLQQV  165 (185)
Q Consensus       122 l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~--~~~~~  165 (185)
                      +..+.-.+..+..||..|+.++..|.+.+..|-.++...  +++||
T Consensus         9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~iNPF   54 (55)
T PF05377_consen    9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQINPF   54 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence            333444456677788899999999999998888888776  44444

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.21  E-value=1  Score=35.63  Aligned_cols=64  Identities=20%  Similarity=0.319  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           94 RMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL  157 (185)
Q Consensus        94 R~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il  157 (185)
                      |.|-..+.+.|..++..+..++..|...+..|+.++..++.+...+......|..++..+...+
T Consensus        47 ~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~  110 (151)
T PF11559_consen   47 RDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL  110 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555566666666666666666666666666666666666665555555555555554444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK11637 AmiB activator; Provisional

Probab=94.05  E-value=2  Score=39.53  Aligned_cols=68  Identities=18%  Similarity=0.204  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           93 SRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus        93 SR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      .....+..+.+++.+++.+..+...+..++..+..++..+..+=..|..++..++.+|......|..+
T Consensus        62 ~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637         62 SVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334455555666666666666666666666666666666666666666666666666666655444

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=93.99  E-value=0.64  Score=44.36  Aligned_cols=52  Identities=17%  Similarity=0.179  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR  148 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~  148 (185)
                      -+....+||.+++.|+.|.+.|..+...+.+++..++.||..|+.++..++.
T Consensus        74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~  125 (475)
T PRK13729         74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA  125 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3457889999999999999999999999999999999999999888754444

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.99  E-value=1.6  Score=37.13  Aligned_cols=40  Identities=8%  Similarity=0.259  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL  157 (185)
Q Consensus       118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il  157 (185)
                      |..++.........|..||+.|+.++..++.++..++.-+
T Consensus       123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~  162 (206)
T PRK10884        123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL  162 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444455555555555555555555444433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.80  E-value=1.5  Score=43.70  Aligned_cols=42  Identities=19%  Similarity=0.275  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSE  142 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae  142 (185)
                      -+-+..+..+|+.|...|+.++....+++..++.|...||..
T Consensus       540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344677888888888888888888888888888877767654

; GO: 0016021 integral to membrane

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=93.73  E-value=0.81  Score=33.91  Aligned_cols=56  Identities=9%  Similarity=0.103  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      .-++.||.+|...-....-|+-++..|+++...|..|+..++.....|.+.-..+.
T Consensus         4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk   59 (79)
T PRK15422          4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK   59 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34688999999888888888888888888888888887775555555555544443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=93.60  E-value=0.5  Score=38.14  Aligned_cols=54  Identities=24%  Similarity=0.394  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHC--QRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~--~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      +.+|+.++..|+.++..|..++..|....  ..|..+-..|+.++..|..||..|.
T Consensus        81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555554444332  3344444555555555555555544

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=93.53  E-value=0.61  Score=40.99  Aligned_cols=62  Identities=18%  Similarity=0.289  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ  161 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~  161 (185)
                      |.+-.++....++..-..=+.+...+.++.+.|+.||..||.++..|+..|..|.+++....
T Consensus       195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~  256 (269)
T KOG3119|consen  195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLP  256 (269)
T ss_pred             HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33333333333333333334444667777889999999999999999999999999987643

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=93.36  E-value=1.1  Score=39.57  Aligned_cols=56  Identities=21%  Similarity=0.296  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus        98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      +..++++..+-..|..++.+|..++..+++++..++.||.+|......|-..+..|
T Consensus       141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L  196 (290)
T COG4026         141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL  196 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence            34466666777777777777888888888888999999999877655444333333

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.16  E-value=2.6  Score=36.05  Aligned_cols=50  Identities=10%  Similarity=0.187  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTIL  146 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~L  146 (185)
                      -.+.+..|..+++.|+..|..|...+.........|..+-..+..-..+|
T Consensus        54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l  103 (251)
T PF11932_consen   54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL  103 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555554544444444444333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=93.15  E-value=0.51  Score=31.21  Aligned_cols=41  Identities=20%  Similarity=0.349  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          117 ELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL  157 (185)
Q Consensus       117 ~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il  157 (185)
                      .|......|+..+..|.++|..|..|...|+..+..+...+
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl   42 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL   42 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35667788899999999999999999999999988887654

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=93.13  E-value=1  Score=33.33  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR  148 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~  148 (185)
                      ++|..++..|+..-..|..++..+++.+..|..||..|..=+..|..
T Consensus        19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~   65 (80)
T PF10224_consen   19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS   65 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888888888999999999999999999999999988888865

The exact function is unknown.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=93.05  E-value=4  Score=43.15  Aligned_cols=15  Identities=33%  Similarity=0.310  Sum_probs=8.4

Q ss_pred             ccCCCCCCCCCCCCCCC
Q 029952           14 MFGNPFPDFESEFTPWD   30 (185)
Q Consensus        14 ~~~~~~~~~~~g~~~w~   30 (185)
                      |-||..|-  +|||+-.
T Consensus       390 f~Gn~LPF--IGfTy~~  404 (1317)
T KOG0612|consen  390 FSGNHLPF--IGFTYTH  404 (1317)
T ss_pred             CcCCcCCe--eeeeecc
Confidence            34555553  5676665

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.04  E-value=1.9  Score=34.00  Aligned_cols=12  Identities=17%  Similarity=0.542  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q 029952          145 ILRRRLSEIRQI  156 (185)
Q Consensus       145 ~Lr~rL~~l~~i  156 (185)
                      +|+..+.++..+
T Consensus       100 EL~~Dv~DlK~m  111 (120)
T PF12325_consen  100 ELRADVQDLKEM  111 (120)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=92.82  E-value=0.7  Score=42.73  Aligned_cols=58  Identities=19%  Similarity=0.243  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           93 SRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL  150 (185)
Q Consensus        93 SR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL  150 (185)
                      -=+|-+.+...||.-+..++.||+.|..+++.+.++|...+.|++.|..|+++-.+..
T Consensus       121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layq  178 (401)
T PF06785_consen  121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQ  178 (401)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence            3456667778888889999999999999999999999999999998877766644333

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=92.73  E-value=2  Score=32.67  Aligned_cols=66  Identities=20%  Similarity=0.248  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRLRFA--LHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQL  162 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L--~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~  162 (185)
                      |+..++.|+.++......-..+..++..+  ...++.|..+=..++.++..|..+|..+..++....-
T Consensus        33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE  100 (106)
T PF10805_consen   33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE  100 (106)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            45666667666666666666666666666  6677777777788888888888888888887776643

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=92.71  E-value=2.8  Score=32.71  Aligned_cols=53  Identities=21%  Similarity=0.250  Sum_probs=25.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           81 RRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVR  133 (185)
Q Consensus        81 RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~  133 (185)
                      .-+..-.|..+-|+..=...-++|+..+..|+.++.....++..|..++..+.
T Consensus        19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~   71 (107)
T PF09304_consen   19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR   71 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555444444444555555555555555555544444444433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.57  E-value=1.9  Score=38.43  Aligned_cols=62  Identities=15%  Similarity=0.333  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      +...+.+++..+..++.+...|..++..+..+...+..++..+.+++..|...|..+..-|.
T Consensus        36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~   97 (265)
T COG3883          36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV   97 (265)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556656666666666666666665555555555555555555555555555544443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.57  E-value=3  Score=34.52  Aligned_cols=70  Identities=10%  Similarity=0.084  Sum_probs=45.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR  149 (185)
Q Consensus        80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r  149 (185)
                      .+.+...+..-+.-.......+.++..-+..|..|...|.-++..+..++..|..||..|-...+..+.+
T Consensus       118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~  187 (194)
T PF08614_consen  118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQ  187 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555566666777777777777777777777777777777777777776666655443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=92.52  E-value=2.4  Score=29.04  Aligned_cols=38  Identities=11%  Similarity=0.266  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL  157 (185)
Q Consensus       120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il  157 (185)
                      ..+..|...+..|..+|..|+.++..|...+..|...+
T Consensus        26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen   26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34555666666777777777777777777776665543

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PRK04406 hypothetical protein; Provisional

Probab=92.47  E-value=1.8  Score=31.44  Aligned_cols=52  Identities=8%  Similarity=0.099  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      +.++.++.+|+.....+...++.|...+..-..+-..|+.++..|..||..+
T Consensus         7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~   58 (75)
T PRK04406          7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM   58 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455666666666666666666666655555556667777777777766653

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=92.34  E-value=6  Score=33.32  Aligned_cols=83  Identities=10%  Similarity=0.146  Sum_probs=50.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRL-------RMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL  150 (185)
Q Consensus        78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L-------~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL  150 (185)
                      +-.+.++....+-+-.+.+...+...++.++..-       +.+-..|..++..|+.+.+.+..++..--+++..|+..+
T Consensus        89 ~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~  168 (190)
T PF05266_consen   89 KFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEA  168 (190)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556667777777777777777777777755       444445555555555554444444555555566666666


Q ss_pred             HHHHHHHHHH
Q 029952          151 SEIRQILLYR  160 (185)
Q Consensus       151 ~~l~~il~~~  160 (185)
                      ..+.+-+.-.
T Consensus       169 ~~l~~~~~~~  178 (190)
T PF05266_consen  169 EALKEEIENA  178 (190)
T ss_pred             HHHHHHHHHH
Confidence            6555555544

>smart00338 BRLZ basic region leucin zipper

Probab=92.29  E-value=0.74  Score=31.64  Aligned_cols=37  Identities=24%  Similarity=0.440  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          121 RLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL  157 (185)
Q Consensus       121 ~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il  157 (185)
                      .+..|..++..|..+|..|+.++..|+..+..|.+++
T Consensus        27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338       27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666777777788888888888888777777665

>PRK02119 hypothetical protein; Provisional

Probab=92.22  E-value=1.8  Score=31.12  Aligned_cols=52  Identities=17%  Similarity=0.199  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      ..++.++..|+.........++.|...+..-..+-..|+.++..|..||..+
T Consensus         5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~   56 (73)
T PRK02119          5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM   56 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444455555555544555555555544444555566666666666666653

>smart00340 HALZ homeobox associated leucin zipper

Probab=92.01  E-value=0.36  Score=32.00  Aligned_cols=27  Identities=26%  Similarity=0.432  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          122 LRFALHHCQRVRTDNDRLRSEHTILRR  148 (185)
Q Consensus       122 l~~L~~~~~~L~~EN~~Lrae~~~Lr~  148 (185)
                      -+.|+..|..|..||.+|..|+.+||.
T Consensus         7 Ce~LKrcce~LteeNrRL~ke~~eLra   33 (44)
T smart00340        7 CELLKRCCESLTEENRRLQKEVQELRA   33 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356788899999999999999999986

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=91.94  E-value=3.7  Score=36.95  Aligned_cols=77  Identities=19%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-----------HHHHHHHHHHHHHH
Q 029952           80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFAL-------H-----------HCQRVRTDNDRLRS  141 (185)
Q Consensus        80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~-------~-----------~~~~L~~EN~~Lra  141 (185)
                      ..+-+.-|+--+....--.++-.+|+.++.+++..|..|..+++.|+       +           +...|+.+|.++++
T Consensus        26 kq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~a  105 (333)
T KOG1853|consen   26 KQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHA  105 (333)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556655555555555555555555555555555544444443       2           34567888888888


Q ss_pred             HHHHHHHHHHHHHHH
Q 029952          142 EHTILRRRLSEIRQI  156 (185)
Q Consensus       142 e~~~Lr~rL~~l~~i  156 (185)
                      ....|+.++..|+|.
T Consensus       106 ikeql~kyiReLEQa  120 (333)
T KOG1853|consen  106 IKEQLRKYIRELEQA  120 (333)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888888888887764

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=91.93  E-value=1.7  Score=41.60  Aligned_cols=61  Identities=20%  Similarity=0.270  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALHHCQR-VRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~-L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      ++..|..+-+.|..||..|+++...+.+++.. |..+...|..+...|+..+..+...|...
T Consensus        74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l  135 (472)
T TIGR03752        74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL  135 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666777777777777777766666555544 33555555555555555555555544444

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>TIGR00219 mreC rod shape-determining protein MreC

Probab=91.81  E-value=0.48  Score=41.86  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 029952          107 QLNRLRMENRELSNRLRFALHHCQR----VRTDNDRLRS  141 (185)
Q Consensus       107 qV~~L~~eN~~L~~~l~~L~~~~~~----L~~EN~~Lra  141 (185)
                      .+.+|..||.+|+.++..+..+...    ++.||++||.
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~  105 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE  105 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777888888777665443332    4555555443

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=91.77  E-value=2  Score=41.80  Aligned_cols=68  Identities=24%  Similarity=0.348  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHH
Q 029952           92 RSRMRKQKHLENLR-------NQLNRLRMENRELSNRLRFALH-----------------------------HCQRVRTD  135 (185)
Q Consensus        92 RSR~RKk~~l~eLe-------~qV~~L~~eN~~L~~~l~~L~~-----------------------------~~~~L~~E  135 (185)
                      .+|.|-|++|.+|-       .+|..|+.+|..|...++.++.                             ..+.++.+
T Consensus        35 ~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~e  114 (546)
T KOG0977|consen   35 DSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIE  114 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666655       5788999999999999888773                             44556777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          136 NDRLRSEHTILRRRLSEIRQILLY  159 (185)
Q Consensus       136 N~~Lrae~~~Lr~rL~~l~~il~~  159 (185)
                      =..|+.|+.+|+.++.........
T Consensus       115 i~kl~~e~~elr~~~~~~~k~~~~  138 (546)
T KOG0977|consen  115 ITKLREELKELRKKLEKAEKERRG  138 (546)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhh
Confidence            778888888888888777555443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.72  E-value=6.3  Score=33.74  Aligned_cols=58  Identities=16%  Similarity=0.234  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus        98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      ++.++++..+...|..+...|..++..|......+...-..++.++..|.+++..+..
T Consensus        41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~   98 (251)
T PF11932_consen   41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE   98 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555555555555555555555555555555555555555553

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=91.67  E-value=0.72  Score=36.20  Aligned_cols=47  Identities=26%  Similarity=0.325  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTI  145 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~  145 (185)
                      ..+.+|+.++..|-++...|+..+..+.+....|.-||..||..+.+
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            46789999999999999999999999999999999999999998876

>PRK04325 hypothetical protein; Provisional

Probab=91.54  E-value=2  Score=30.93  Aligned_cols=46  Identities=17%  Similarity=0.180  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      +.+||.++..++.-...|...       +..-..+-..|+.++..|..||..+
T Consensus        11 i~~LE~klAfQE~tIe~LN~v-------v~~Qq~~I~~L~~ql~~L~~rl~~~   56 (74)
T PRK04325         11 ITELEIQLAFQEDLIDGLNAT-------VARQQQTLDLLQAQLRLLYQQMRDA   56 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555555555554444443       3333444456666666666666653

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=91.36  E-value=0.016  Score=53.26  Aligned_cols=52  Identities=25%  Similarity=0.242  Sum_probs=44.6

Q ss_pred             cchhHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 029952           72 VSVIDERKRRRMISNRESARR---SRMRKQKHLENLRNQLNRLR-MENRELSNRLR  123 (185)
Q Consensus        72 ~~~~deRk~RR~lsNRESARR---SR~RKk~~l~eLe~qV~~L~-~eN~~L~~~l~  123 (185)
                      ....++|+..|+++|+.+|.+   +|.||+.+...|..+|+.|+ .+|..|..++.
T Consensus       148 ~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is  203 (395)
T KOG1414|consen  148 TPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQIS  203 (395)
T ss_pred             CCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccc
Confidence            456788899999999999999   99999999999999999999 77766555443

>PRK11637 AmiB activator; Provisional

Probab=91.34  E-value=5.8  Score=36.49  Aligned_cols=74  Identities=12%  Similarity=0.128  Sum_probs=53.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           83 MISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI  156 (185)
Q Consensus        83 ~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i  156 (185)
                      +.+.....+.....-...+..|+.++..+..+...+..++..+..++..+..+=..++.++..++..|...-..
T Consensus        59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra  132 (428)
T PRK11637         59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDA  132 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444455555667788888888888888888888888888888888888777777777766666554433

>PRK02793 phi X174 lysis protein; Provisional

Probab=91.26  E-value=2.3  Score=30.52  Aligned_cols=50  Identities=14%  Similarity=0.093  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus       104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      ++.++.+|+.........++.|.+.+..-..+-..|..++..|..||..+
T Consensus         6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~   55 (72)
T PRK02793          6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS   55 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444444444444444444444444444445566666667777766664

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=91.15  E-value=4.3  Score=29.17  Aligned_cols=61  Identities=15%  Similarity=0.267  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL  157 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il  157 (185)
                      |...+..|-.+-..|......+...|..|+.+...++.+...|+..+..+...+..+...+
T Consensus        10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l   70 (74)
T PF12329_consen   10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL   70 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5666777777777777777777777777777777777777777766666666666666554

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=91.03  E-value=7.2  Score=31.55  Aligned_cols=81  Identities=16%  Similarity=0.166  Sum_probs=50.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL  157 (185)
Q Consensus        78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il  157 (185)
                      |-..-...|++.+-.--.-+++.+..|+.++..+..+...|...+..+...-..|..+=...+.++.+|.....++...|
T Consensus        31 reLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l  110 (140)
T PF10473_consen   31 RELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL  110 (140)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            34455677777777777777777777777777777777777777666655544444444444444444444444444444


Q ss_pred             H
Q 029952          158 L  158 (185)
Q Consensus       158 ~  158 (185)
                      .
T Consensus       111 ~  111 (140)
T PF10473_consen  111 Q  111 (140)
T ss_pred             H
Confidence            3

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.76  E-value=6.5  Score=37.58  Aligned_cols=62  Identities=19%  Similarity=0.167  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      -..+.|+.++.+|..+|.+|+..+..|+..+..|..|-+++-.++..|+.+|.+..+.-..+
T Consensus       297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm  358 (502)
T KOG0982|consen  297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRM  358 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567778899999999999999999999999999999999999999999998876655443

>PRK00295 hypothetical protein; Provisional

Probab=90.75  E-value=3  Score=29.58  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      ++.+||.++..++.-...|...+.       .-..+-..|+.++..|..||..+
T Consensus         6 Ri~~LE~kla~qE~tie~Ln~~v~-------~Qq~~I~~L~~ql~~L~~rl~~~   52 (68)
T PRK00295          6 RVTELESRQAFQDDTIQALNDVLV-------EQQRVIERLQLQMAALIKRQEEM   52 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            467777777776666655555443       33334456666666666666664

>PRK09039 hypothetical protein; Validated

Probab=90.73  E-value=6.1  Score=35.85  Aligned_cols=47  Identities=17%  Similarity=0.123  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          107 QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus       107 qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      +|..|+.+...|+.++..+...+..++.+....+.++..|..+|...
T Consensus       138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444455555555444443

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=90.70  E-value=1.3  Score=43.22  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          123 RFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus       123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      ..|+..+++|..||+.||.|.+.|+++|..|..
T Consensus       305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~  337 (655)
T KOG4343|consen  305 LGLEARLQALLSENEQLKKENATLKRQLDELVS  337 (655)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            345556677888888888888888888887753

>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]

Probab=90.60  E-value=1.9  Score=33.60  Aligned_cols=41  Identities=22%  Similarity=0.250  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus       120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      ..+..|.++...+..||-.||+|...|-+-+++|...-.+.
T Consensus        70 nTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVF  110 (120)
T KOG3650|consen   70 NTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVF  110 (120)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhh
Confidence            34444445555566667777777777777777776554443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=90.56  E-value=2.1  Score=38.94  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI  156 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i  156 (185)
                      ++|...++.|+.+|..|+.++...+.++..|..||..||.....+..+...-+..
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~   77 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF   77 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777778888888888888888888888888888888888877777766554443

>PRK00846 hypothetical protein; Provisional

Probab=90.32  E-value=3.2  Score=30.52  Aligned_cols=52  Identities=17%  Similarity=0.068  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus       103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      .++.++..|+.........++.|...+.....+-..|+.++..|..||..+.
T Consensus        10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846         10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455555555555555555555555555556666677777777777776654

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=90.30  E-value=6  Score=29.42  Aligned_cols=68  Identities=18%  Similarity=0.289  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           77 ERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHT  144 (185)
Q Consensus        77 eRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~  144 (185)
                      -++..+.+.+=|++=..|.-+.....+++.++..|...-..|-.++.....++..|+.-|..+...+.
T Consensus        10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~   77 (89)
T PF13747_consen   10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD   77 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            34667778888888877777777779999999999999999999999888888888888866654444

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.16  E-value=6  Score=31.12  Aligned_cols=16  Identities=19%  Similarity=0.358  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q 029952          133 RTDNDRLRSEHTILRR  148 (185)
Q Consensus       133 ~~EN~~Lrae~~~Lr~  148 (185)
                      ..++..|++.+..|+.
T Consensus        95 ~E~veEL~~Dv~DlK~  110 (120)
T PF12325_consen   95 SEEVEELRADVQDLKE  110 (120)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=90.05  E-value=3.5  Score=33.22  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRL--RFALHHCQRVRTDNDRLRSEHTILRR  148 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l--~~L~~~~~~L~~EN~~Lrae~~~Lr~  148 (185)
                      -+..+.+|+.++..|+.+-..|....  ..|......+..|+..|...+..|+.
T Consensus        84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455566666666666665555543  44555555666666666666665554

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=90.03  E-value=2.7  Score=29.69  Aligned_cols=49  Identities=27%  Similarity=0.347  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      .++.+||.++..++.-...|...+..-..       +-..|+.++..|..||..+.
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~-------~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQQR-------QIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhc
Confidence            45677777777776666666655544444       44455555566666666654

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=90.01  E-value=8  Score=31.78  Aligned_cols=59  Identities=25%  Similarity=0.341  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY  159 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~  159 (185)
                      ..+|..+|..|+.+|..|...+..+..+...+......|+.+...|..|-..+..-+.-
T Consensus        91 ~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e  149 (158)
T PF09744_consen   91 RKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKE  149 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677788888888888888888888888888888888888888888777666555543

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.90  E-value=16  Score=33.85  Aligned_cols=56  Identities=16%  Similarity=0.278  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE  152 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~  152 (185)
                      .+++++.+....+.|+.--++|..-.+.|......|+.+-..|.+.+..|..+...
T Consensus       223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555544

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=89.79  E-value=4.3  Score=36.42  Aligned_cols=65  Identities=14%  Similarity=0.302  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQ  163 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~  163 (185)
                      ..++.+..++..|+.+|..++.+.......+..+..|+..+..++..++.++..|..+...+|-+
T Consensus       244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e  308 (309)
T PF09728_consen  244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE  308 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            66788888999999999999999999999999999999999999999999999999988777643

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=89.72  E-value=2.4  Score=41.17  Aligned_cols=62  Identities=26%  Similarity=0.438  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           90 ARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS  151 (185)
Q Consensus        90 ARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~  151 (185)
                      |.+.|..-...+.++...+..++++...++.++..+......|..||.+|+.++..++..|.
T Consensus       132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld  193 (546)
T KOG0977|consen  132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD  193 (546)
T ss_pred             HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            33344444455566667777788888888888888888888888888888888888776443

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=89.65  E-value=3.8  Score=37.04  Aligned_cols=44  Identities=16%  Similarity=0.240  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ  161 (185)
Q Consensus       118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~  161 (185)
                      =+.+-+.|.-+|+.|+.+|.+||.++.+|...+..|.|+|.-+.
T Consensus       246 kRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~  289 (294)
T KOG4571|consen  246 KRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY  289 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667788899999999999999999999999999887553

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=89.61  E-value=4.8  Score=32.25  Aligned_cols=50  Identities=18%  Similarity=0.304  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL  150 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL  150 (185)
                      ++.++.++..|+.++..+..+|..|..++..++.+=..+...+..+...+
T Consensus        16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l   65 (143)
T PF12718_consen   16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL   65 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444433333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.56  E-value=4.1  Score=36.40  Aligned_cols=60  Identities=18%  Similarity=0.213  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      .++..|..++..+..+...++..+..++.++..+..+-..+.++..++...+..+..++.
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666666666666666666666666666666666666666666665554

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=89.34  E-value=1.2  Score=30.49  Aligned_cols=50  Identities=30%  Similarity=0.331  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR  148 (185)
Q Consensus        96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~  148 (185)
                      |+...+++|+.++..=+ |...+  .-......+..++.||..|++++.-++.
T Consensus         1 kw~~Rl~ELe~klkaer-E~R~~--d~~~a~~rl~~l~~EN~~Lr~eL~~~r~   50 (52)
T PF12808_consen    1 KWLLRLEELERKLKAER-EARSL--DRSAARKRLSKLEGENRLLRAELERLRS   50 (52)
T ss_pred             CHHHHHHHHHHHHHHhH-HhccC--CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35567777777665533 22221  2244566777888888888888876553

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>PF15294 Leu_zip: Leucine zipper

Probab=89.23  E-value=2.2  Score=38.27  Aligned_cols=48  Identities=21%  Similarity=0.365  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS  151 (185)
Q Consensus       104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~  151 (185)
                      |..++..|+.||..|+.++..+..+|-....|+..|..++.+|+...+
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~  177 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQG  177 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677889999999999999999999999999999999988888887333

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.07  E-value=13  Score=31.47  Aligned_cols=26  Identities=31%  Similarity=0.434  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRL  122 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l  122 (185)
                      .++.++.+..++..++..+......+
T Consensus        82 ~~~~i~~~r~~l~~~~~~l~~~~~~l  107 (302)
T PF10186_consen   82 LRKRIEQKRERLEELRESLEQRRSRL  107 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=88.71  E-value=3.4  Score=29.49  Aligned_cols=40  Identities=25%  Similarity=0.310  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          106 NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTI  145 (185)
Q Consensus       106 ~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~  145 (185)
                      .....|..|+.....+++.....+..|..||..|+.++..
T Consensus        26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~   65 (69)
T PF14197_consen   26 IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE   65 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444433

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=88.69  E-value=3.3  Score=29.23  Aligned_cols=50  Identities=14%  Similarity=0.109  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus       104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      |+.++..|+.....+...+..|..       .-.....++..|+..|..|..-|.-+
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~-------~v~~Qq~~I~~L~~~l~~L~~rl~~~   51 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELND-------VVTEQQRQIDRLQRQLRLLRERLREL   51 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455566655555555444433332       22334455556666666666555543

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.53  E-value=7.1  Score=34.79  Aligned_cols=66  Identities=17%  Similarity=0.290  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccC
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR--QLQQVT  166 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~--~~~~~~  166 (185)
                      ..+++.+|..|..+...+..++..+..++..+..|=..|..++.+|+.+|..-..+|.-+  -.|..+
T Consensus        47 ~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG  114 (265)
T COG3883          47 KKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNG  114 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            345666666666666666666666666666677777777777777777777777777654  444444

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=88.22  E-value=12  Score=30.20  Aligned_cols=61  Identities=23%  Similarity=0.429  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI  156 (185)
Q Consensus        96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i  156 (185)
                      ..+..++.++..+..+..+-..|...+...+..+..+..+-..+......|...+.+...+
T Consensus       127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l  187 (191)
T PF04156_consen  127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL  187 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444443333333444444444444444444444444444333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=88.17  E-value=14  Score=32.98  Aligned_cols=56  Identities=16%  Similarity=0.317  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus        98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      +.+++.+..++...+.+-..+..++...+.++..++.+=.+|...+..++.++..+
T Consensus       206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf  261 (269)
T PF05278_consen  206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF  261 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666666667777777777777777777777766666666666666666666554

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=88.11  E-value=7.9  Score=35.18  Aligned_cols=64  Identities=20%  Similarity=0.252  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ  161 (185)
Q Consensus        98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~  161 (185)
                      +..+..|-.++.+|+...+.+..+...|..++.....-...|.+|+.+|+.|...+...|+-.|
T Consensus       233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ  296 (306)
T PF04849_consen  233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ  296 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445455555555555555555555555544444445566777777777777776666554

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=88.11  E-value=2  Score=32.80  Aligned_cols=25  Identities=12%  Similarity=0.250  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLR  123 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~  123 (185)
                      +++.+++.++..|+.+|..|..++.
T Consensus        34 ~q~~~~~~e~~~l~~~n~~L~~eI~   58 (105)
T PRK00888         34 DQVAAQQQTNAKLKARNDQLFAEID   58 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=88.01  E-value=18  Score=31.79  Aligned_cols=50  Identities=22%  Similarity=0.297  Sum_probs=38.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC  129 (185)
Q Consensus        80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~  129 (185)
                      .+++..-.+.+++.=.-++..+++|+.+|..++.+.+.++.++..+....
T Consensus        33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566667777777777888888888888888888888888777766544

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=87.96  E-value=3  Score=35.99  Aligned_cols=17  Identities=41%  Similarity=0.329  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 029952          109 NRLRMENRELSNRLRFA  125 (185)
Q Consensus       109 ~~L~~eN~~L~~~l~~L  125 (185)
                      .+|.+||.+|++++..|
T Consensus        72 ~~l~~en~~L~~e~~~l   88 (276)
T PRK13922         72 FDLREENEELKKELLEL   88 (276)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=87.93  E-value=6.8  Score=33.48  Aligned_cols=56  Identities=25%  Similarity=0.401  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRE-------LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~-------L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      ..+++|..-+..|+.+|..       |..+.+.|...++.|..||..|..+...|..+...|.
T Consensus        67 eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~  129 (193)
T PF14662_consen   67 EELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA  129 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence            3444444444444443333       3444455555566666666666666666666666653

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=87.74  E-value=16  Score=30.84  Aligned_cols=86  Identities=17%  Similarity=0.272  Sum_probs=58.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 029952           78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL--------RSEHTILRRR  149 (185)
Q Consensus        78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L--------rae~~~Lr~r  149 (185)
                      ...++.+.+-+.-+.+=..-+..+..++.++..|+.++..|..++..+......|..--...        --...-|..+
T Consensus        72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkK  151 (201)
T PF13851_consen   72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKK  151 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677788888877777777788888888888888888888888777776666654222111        1123346777


Q ss_pred             HHHHHHHHHHHHhh
Q 029952          150 LSEIRQILLYRQLQ  163 (185)
Q Consensus       150 L~~l~~il~~~~~~  163 (185)
                      |..|...|.....|
T Consensus       152 l~~l~~~lE~keaq  165 (201)
T PF13851_consen  152 LQALSEQLEKKEAQ  165 (201)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777776544

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=87.63  E-value=16  Score=30.87  Aligned_cols=17  Identities=29%  Similarity=0.413  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 029952          141 SEHTILRRRLSEIRQIL  157 (185)
Q Consensus       141 ae~~~Lr~rL~~l~~il  157 (185)
                      .+...++.++..+...+
T Consensus       126 ~~~~~~~~~l~~l~~~l  142 (302)
T PF10186_consen  126 NELEERKQRLSQLQSQL  142 (302)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444433333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=87.61  E-value=2  Score=41.13  Aligned_cols=58  Identities=19%  Similarity=0.357  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFAL-HHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY  159 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~-~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~  159 (185)
                      +.|..+-+.|+.....+..+++... ....++..|-++|+.+...|+..|..|..-|.-
T Consensus        83 ~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~  141 (472)
T TIGR03752        83 EALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG  141 (472)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4466666677776666666665544 334456667777777777777777777666643

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=87.59  E-value=2.6  Score=39.03  Aligned_cols=33  Identities=30%  Similarity=0.363  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          106 NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLR  140 (185)
Q Consensus       106 ~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lr  140 (185)
                      .+...|+.||..|+++++.|+.+.++|  ||.+|+
T Consensus        32 ~e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~   64 (420)
T PF07407_consen   32 DENFALRMENHSLKKENNDLKIEVERL--ENEMLR   64 (420)
T ss_pred             hhhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence            355677888888888888888888777  666665

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=87.52  E-value=4.8  Score=31.81  Aligned_cols=24  Identities=17%  Similarity=0.278  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          118 LSNRLRFALHHCQRVRTDNDRLRS  141 (185)
Q Consensus       118 L~~~l~~L~~~~~~L~~EN~~Lra  141 (185)
                      |+.+|..|.++...|+.||..||.
T Consensus        72 Lk~qI~eL~er~~~Le~EN~lLk~   95 (123)
T KOG4797|consen   72 LKEQIRELEERNSALERENSLLKT   95 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444445556666666654

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=87.46  E-value=4.3  Score=35.49  Aligned_cols=22  Identities=14%  Similarity=0.217  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRL  122 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l  122 (185)
                      ..+||.++..+..+...|+.++
T Consensus        95 n~ELE~elr~~~~~~~~L~~Ev  116 (248)
T PF08172_consen   95 NAELEEELRKQQQTISSLRREV  116 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3666666666555555554443

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PRK00736 hypothetical protein; Provisional

Probab=87.26  E-value=7  Score=27.67  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE  152 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~  152 (185)
                      .++.+||.++..++.-...|...+..-.       .+-..|..++..|..||..
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq-------~~i~~L~~ql~~L~~rl~~   51 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQW-------KTVEQMRKKLDALTERFLS   51 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            3477888888877766666655543322       2334555556666666655

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=87.25  E-value=6.2  Score=39.92  Aligned_cols=69  Identities=23%  Similarity=0.318  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029952           94 RMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQL  162 (185)
Q Consensus        94 R~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~  162 (185)
                      =.||+..+..|..++..+..++..++..+..++..+.....++..|.+++..|+.+|..-...|...+-
T Consensus       296 L~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~  364 (775)
T PF10174_consen  296 LSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQA  364 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            356777889999999999999999999999999999999999999999999999999998888876653

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=86.55  E-value=1  Score=31.72  Aligned_cols=24  Identities=13%  Similarity=0.241  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          118 LSNRLRFALHHCQRVRTDNDRLRS  141 (185)
Q Consensus       118 L~~~l~~L~~~~~~L~~EN~~Lra  141 (185)
                      |+.+|..|.++...|+.||..||.
T Consensus        19 LK~~I~eL~~~n~~Le~EN~~Lk~   42 (59)
T PF01166_consen   19 LKEQIAELEERNSQLEEENNLLKQ   42 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444455556655554

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=86.39  E-value=12  Score=35.48  Aligned_cols=69  Identities=16%  Similarity=0.213  Sum_probs=35.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTIL  146 (185)
Q Consensus        78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~L  146 (185)
                      ++++-..++=+.-.++....+.....|+.+++.++.+...+..++.........+...+..+...+..|
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l  106 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL  106 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence            344444444444444445555556666666666666666655555544444444444444444444333

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=86.18  E-value=11  Score=32.58  Aligned_cols=47  Identities=15%  Similarity=0.285  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL  150 (185)
Q Consensus       104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL  150 (185)
                      |+.+++....+-..+..+...|+.+...+..|-++|.++...|+.++
T Consensus       163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i  209 (216)
T KOG1962|consen  163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI  209 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            33333333333333333334444444444444444444444444433

>PF15058 Speriolin_N: Speriolin N terminus

Probab=86.08  E-value=1.6  Score=37.29  Aligned_cols=34  Identities=41%  Similarity=0.602  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSE  142 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae  142 (185)
                      .+.|..+++.|..||.+|++.+.        |..||.+||.-
T Consensus         7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksa   40 (200)
T PF15058_consen    7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSA   40 (200)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHH
Confidence            46788999999999999988764        45567666543

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=85.69  E-value=11  Score=31.45  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          119 SNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus       119 ~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      ..++..+..+...|..+|..|..++..|..++..+.
T Consensus       103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~  138 (161)
T TIGR02894       103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE  138 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444333

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=85.42  E-value=12  Score=29.92  Aligned_cols=58  Identities=21%  Similarity=0.342  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      +-..+..|..++..|+.+...+..++..+.....    +.......+..|.+|+.-|..-|.
T Consensus        33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le----e~~~~~~~~E~l~rriq~LEeele   90 (143)
T PF12718_consen   33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE----ESEKRKSNAEQLNRRIQLLEEELE   90 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHhHHHHHhhHHHHHHHHH
Confidence            3344444444444444444444444443333322    222222333355555555554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=85.30  E-value=21  Score=29.84  Aligned_cols=39  Identities=18%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL  139 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L  139 (185)
                      ..+|+.++..|+.++..|..++..+..++..++..+..+
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~  160 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL  160 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568888888899999888888888888888877666554

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=85.29  E-value=7  Score=34.67  Aligned_cols=56  Identities=25%  Similarity=0.347  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      ...+++..++..+..+|..|..++..+...+..+..+=..|+.++..|...+..+.
T Consensus       135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~  190 (290)
T COG4026         135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP  190 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            44455566666666666666666666666665555555555555555555444443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=85.20  E-value=13  Score=37.18  Aligned_cols=15  Identities=33%  Similarity=0.605  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 029952          103 NLRNQLNRLRMENRE  117 (185)
Q Consensus       103 eLe~qV~~L~~eN~~  117 (185)
                      +||.++..|+.|-..
T Consensus       549 ~lE~E~~~lr~elk~  563 (697)
T PF09726_consen  549 QLESELKKLRRELKQ  563 (697)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444433333

; GO: 0016021 integral to membrane

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=85.16  E-value=28  Score=35.03  Aligned_cols=35  Identities=11%  Similarity=0.153  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          123 RFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL  157 (185)
Q Consensus       123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il  157 (185)
                      ..+......+..+...+..++..++..+..+..-+
T Consensus       451 ~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l  485 (1164)
T TIGR02169       451 KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL  485 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444454444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=85.10  E-value=33  Score=33.61  Aligned_cols=19  Identities=26%  Similarity=0.543  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 029952          134 TDNDRLRSEHTILRRRLSE  152 (185)
Q Consensus       134 ~EN~~Lrae~~~Lr~rL~~  152 (185)
                      ..+..|..+...|..++..
T Consensus       199 ~~~e~l~~E~~~L~~q~~e  217 (546)
T PF07888_consen  199 ESSEELKEERESLKEQLAE  217 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333344444443333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=85.10  E-value=35  Score=32.30  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=24.7

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 029952           74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQ  107 (185)
Q Consensus        74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~q  107 (185)
                      .-++|.+||+...-|-=||-|..=...+.+|..-
T Consensus       225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~l  258 (411)
T KOG1318|consen  225 TALERDRRKRDNHNEVERRRRENINDRIKELGQL  258 (411)
T ss_pred             chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            3456667777888888888888777777777653

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=85.08  E-value=2.9  Score=31.96  Aligned_cols=47  Identities=11%  Similarity=0.219  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          109 NRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus       109 ~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      .+|+.+-+-...+...+...+..++.+|..|+.|+..++.+.+.+..
T Consensus         4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~   50 (96)
T PF11365_consen    4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS   50 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            34444444455555566666777888888888888877776655443

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.07  E-value=13  Score=27.32  Aligned_cols=27  Identities=11%  Similarity=0.031  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      ++.|+.+|.+.-.-..-|.-++..|++
T Consensus         6 ~ekLE~KiqqAvdTI~LLQmEieELKE   32 (79)
T COG3074           6 FEKLEAKVQQAIDTITLLQMEIEELKE   32 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666655543333333333333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=84.86  E-value=25  Score=32.79  Aligned_cols=30  Identities=10%  Similarity=0.197  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          103 NLRNQLNRLRMENRELSNRLRFALHHCQRV  132 (185)
Q Consensus       103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L  132 (185)
                      .|+.++..|+.++..+..++..+..++..+
T Consensus       362 ~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~  391 (562)
T PHA02562        362 KVKAAIEELQAEFVDNAEELAKLQDELDKI  391 (562)
T ss_pred             HHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=84.80  E-value=21  Score=32.50  Aligned_cols=75  Identities=11%  Similarity=0.117  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           87 RESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ  161 (185)
Q Consensus        87 RESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~  161 (185)
                      -|+++|-....+.++.+++.-...=+..-.....+-..+.+++..+..||-.|+.++.....+...-..++.-+|
T Consensus       181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ  255 (305)
T PF14915_consen  181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQ  255 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            567777777777777777766655555556666677888999999999999999999999998888776666555

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=84.80  E-value=13  Score=31.08  Aligned_cols=46  Identities=22%  Similarity=0.261  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          105 RNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL  150 (185)
Q Consensus       105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL  150 (185)
                      ..+...|..-|.-|+.+++........|..|+..|..+...|+..|
T Consensus        73 qqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL  118 (182)
T PF15035_consen   73 QQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL  118 (182)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444333333333333333333333333333

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=84.80  E-value=6.3  Score=27.16  Aligned_cols=29  Identities=21%  Similarity=0.429  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRLRFA  125 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L  125 (185)
                      .++.+.+|+.+++.++.+|..|..++..+
T Consensus        22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   22 LNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445555555555555555555555444

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=84.80  E-value=3.8  Score=31.25  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          117 ELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI  156 (185)
Q Consensus       117 ~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i  156 (185)
                      ++..++..++++...+..+|..|+.++..|+..-..++.+
T Consensus        31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~   70 (105)
T PRK00888         31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER   70 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence            3444444444444455556666666666665543444433

>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer)

Probab=84.56  E-value=12  Score=26.70  Aligned_cols=56  Identities=21%  Similarity=0.256  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      .|..+++.|+..|..|...++..+.++..+.....+-.+....|+-++..-.+++.
T Consensus         2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e   57 (67)
T PF10506_consen    2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKE   57 (67)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            47778889999999999999999999998888888877777777766655444433

MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=84.37  E-value=8.1  Score=33.69  Aligned_cols=47  Identities=13%  Similarity=0.135  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTI  145 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~  145 (185)
                      +-+-+|..++++|+.|..+|+.+++.+.+++..+......|-.++..
T Consensus        54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~  100 (263)
T PRK10803         54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS  100 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578888999999998888888888888777776666665555544

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=84.02  E-value=8.6  Score=31.43  Aligned_cols=21  Identities=33%  Similarity=0.623  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 029952          130 QRVRTDNDRLRSEHTILRRRL  150 (185)
Q Consensus       130 ~~L~~EN~~Lrae~~~Lr~rL  150 (185)
                      ..+..++..|+.++..|+++|
T Consensus        76 ~~lr~~~e~L~~eie~l~~~L   96 (177)
T PF07798_consen   76 AELRSENEKLQREIEKLRQEL   96 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444433

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=83.95  E-value=7.6  Score=27.45  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          115 NRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR  148 (185)
Q Consensus       115 N~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~  148 (185)
                      ...+..++..+..+...+..||..|+.|...|..
T Consensus        26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~   59 (85)
T TIGR02209        26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR   59 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3444455555555556666666666666666554

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PRK02119 hypothetical protein; Provisional

Probab=83.68  E-value=11  Score=27.08  Aligned_cols=48  Identities=8%  Similarity=0.034  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTIL  146 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~L  146 (185)
                      .++.+||.++..++.-...|...+..-...+..|..+-..|..++..+
T Consensus         9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~   56 (73)
T PRK02119          9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM   56 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345555555555555555555555555555555555555555544443

>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum

Probab=83.46  E-value=7.8  Score=28.32  Aligned_cols=46  Identities=28%  Similarity=0.355  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI  156 (185)
Q Consensus       110 ~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i  156 (185)
                      ....+...+..+++.+..+...+..||..|+.|...|.. ...++++
T Consensus        32 ~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~-~~rIe~i   77 (97)
T PF04999_consen   32 YSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS-PSRIERI   77 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHHH
Confidence            344556677777888888888889999999999887765 4444444

One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=83.37  E-value=29  Score=31.17  Aligned_cols=66  Identities=17%  Similarity=0.171  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           95 MRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus        95 ~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      .+..+++.+|+.+...|..+-..|..+...+.+.-.....+...+..+...+......+...+...
T Consensus        60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~  125 (314)
T PF04111_consen   60 EELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA  125 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555555555555555444555555555555555555555555444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=83.03  E-value=24  Score=37.04  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          116 RELSNRLRFALHHCQRVRTDNDRLRSEHTILRR  148 (185)
Q Consensus       116 ~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~  148 (185)
                      .+...++..|..+...++..+..|+.+..+++.
T Consensus       397 ~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~  429 (1074)
T KOG0250|consen  397 EERENKLEQLKKEVEKLEEQINSLREELNEVKE  429 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444333

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=82.96  E-value=7.8  Score=33.93  Aligned_cols=41  Identities=17%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS  151 (185)
Q Consensus       104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~  151 (185)
                      ...++.+|+.|...+..++..|+.++       ..|++.+..|-.|+.
T Consensus        91 FR~Rn~ELE~elr~~~~~~~~L~~Ev-------~~L~~DN~kLYEKiR  131 (248)
T PF08172_consen   91 FRQRNAELEEELRKQQQTISSLRREV-------ESLRADNVKLYEKIR  131 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            44555555555555555554444444       444444455555544

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=82.95  E-value=18  Score=38.01  Aligned_cols=72  Identities=19%  Similarity=0.307  Sum_probs=52.6

Q ss_pred             HHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 029952           83 MISNRESARRSRMRK------------QKHLENLRNQLNRLRMENRELSNRLRFALH---HCQRVRTDNDRLRSEHTILR  147 (185)
Q Consensus        83 ~lsNRESARRSR~RK------------k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~---~~~~L~~EN~~Lrae~~~Lr  147 (185)
                      +.-+|-.|+....+.            .+++++|+..+-.|+.||+.|..+|..|..   ....|+..|..|.....+++
T Consensus       502 ~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elk  581 (1195)
T KOG4643|consen  502 LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELK  581 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHH
Confidence            455666666665543            378899999999999999999999999876   44456777777766666666


Q ss_pred             HHHHHHH
Q 029952          148 RRLSEIR  154 (185)
Q Consensus       148 ~rL~~l~  154 (185)
                      .-+..|.
T Consensus       582 k~idaL~  588 (1195)
T KOG4643|consen  582 KYIDALN  588 (1195)
T ss_pred             HHHHHHH
Confidence            6555554

>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1)

Probab=82.80  E-value=12  Score=29.71  Aligned_cols=62  Identities=23%  Similarity=0.309  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           89 SARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL  150 (185)
Q Consensus        89 SARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL  150 (185)
                      +..+-+.=-...+.+|+.++..|..+--.=..++..+-.+.+.|..++..|..-+..|..||
T Consensus         4 ~l~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RL   65 (120)
T PF10482_consen    4 LLNKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRL   65 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444556677777777777666554455555555555555555555555555555554

At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=82.50  E-value=21  Score=29.84  Aligned_cols=16  Identities=13%  Similarity=0.297  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q 029952          129 CQRVRTDNDRLRSEHT  144 (185)
Q Consensus       129 ~~~L~~EN~~Lrae~~  144 (185)
                      +..|..++..|+.++.
T Consensus       112 l~~l~~~~~~l~~el~  127 (188)
T PF03962_consen  112 LEELKKELKELKKELE  127 (188)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444433

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids []

Probab=82.45  E-value=16  Score=26.33  Aligned_cols=55  Identities=13%  Similarity=0.172  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      |+.-=......-+........|...+.....+|..|++++..|..++..|..-+.
T Consensus        12 le~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~   66 (70)
T PF04899_consen   12 LEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE   66 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344455556677777777788888888999999999999999988877654

>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]

Probab=82.26  E-value=6.2  Score=39.19  Aligned_cols=54  Identities=17%  Similarity=0.203  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      .+|-.+|.+|.-|+.-|+.++...++.-..|+..+..|..|+..+++++...++
T Consensus       325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~  378 (832)
T KOG2077|consen  325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ  378 (832)
T ss_pred             HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478889999999999999999998888888888888888888888887776644

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=82.12  E-value=29  Score=29.17  Aligned_cols=57  Identities=18%  Similarity=0.233  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      ..++.++..|+...-+|+.+...+.........|..+|++....|.+.+.+++.-+.
T Consensus       127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~  183 (190)
T PF05266_consen  127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ  183 (190)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777777777777777777888888898888888888888776544

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=82.09  E-value=11  Score=28.22  Aligned_cols=40  Identities=28%  Similarity=0.323  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 029952          110 RLRMENRELSNRLRFALH------HCQRVRTDNDRLRSEHTILRRR  149 (185)
Q Consensus       110 ~L~~eN~~L~~~l~~L~~------~~~~L~~EN~~Lrae~~~Lr~r  149 (185)
                      .+..+|..|..++..|+.      .+.....||.+|+.++..|+.-
T Consensus        21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f   66 (86)
T PF12711_consen   21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSF   66 (86)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555556666665553      3445678888888888766653

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=81.86  E-value=19  Score=30.10  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          115 NRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       115 N~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      |..|..-+..|++++......|..|..++..|+..+..+.+-|.
T Consensus        76 ~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~  119 (182)
T PF15035_consen   76 SEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE  119 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444333

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=81.84  E-value=16  Score=33.07  Aligned_cols=85  Identities=22%  Similarity=0.364  Sum_probs=49.5

Q ss_pred             cchhHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           72 VSVIDERKRRRMISNRESARRSRMR--KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR  149 (185)
Q Consensus        72 ~~~~deRk~RR~lsNRESARRSR~R--Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r  149 (185)
                      ....+||-++=|++|   |+--=.|  =.-+++-|..++..|+.....|..++......+..+......|+.+...|+..
T Consensus        86 l~evEekyrkAMv~n---aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~  162 (302)
T PF09738_consen   86 LAEVEEKYRKAMVSN---AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ  162 (302)
T ss_pred             HHHHHHHHHHHHHHH---hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777778887   2221111  12345555566666666666666665555555555566666667777777777


Q ss_pred             HHHHHHHHHH
Q 029952          150 LSEIRQILLY  159 (185)
Q Consensus       150 L~~l~~il~~  159 (185)
                      |....++|.-
T Consensus       163 L~~rdeli~k  172 (302)
T PF09738_consen  163 LKQRDELIEK  172 (302)
T ss_pred             HHHHHHHHHH
Confidence            7666666643

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=81.80  E-value=6.3  Score=27.16  Aligned_cols=31  Identities=16%  Similarity=0.344  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          117 ELSNRLRFALHHCQRVRTDNDRLRSEHTILR  147 (185)
Q Consensus       117 ~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr  147 (185)
                      .+..++..+..+...+..+|..|+.++..|+
T Consensus        21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~   51 (80)
T PF04977_consen   21 QLNQEIAELQKEIEELKKENEELKEEIERLK   51 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444445555555556666666666666663

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=81.51  E-value=15  Score=25.51  Aligned_cols=47  Identities=21%  Similarity=0.376  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      ++.|..+|..|..+...|...+       ..+..+-...+.|.+.--.||.++.
T Consensus         5 id~Ls~dVq~L~~kvdqLs~dv-------~~lr~~v~~ak~EAaRAN~RlDN~a   51 (56)
T PF04728_consen    5 IDQLSSDVQTLNSKVDQLSSDV-------NALRADVQAAKEEAARANQRLDNIA   51 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            4444444444444444444444       4444444455555555556665544

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF15233 SYCE1: Synaptonemal complex central element protein 1

Probab=81.45  E-value=24  Score=28.54  Aligned_cols=63  Identities=25%  Similarity=0.320  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQL  162 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~  162 (185)
                      ++++|-.+++.|+..-.....+++........|..|=+.|..|...|..=|..-..++..+|+
T Consensus         7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLql   69 (134)
T PF15233_consen    7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQL   69 (134)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666666666666666666666666666666666666666555555555444443

>PRK09039 hypothetical protein; Validated

Probab=81.43  E-value=27  Score=31.75  Aligned_cols=7  Identities=0%  Similarity=0.619  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 029952          147 RRRLSEI  153 (185)
Q Consensus       147 r~rL~~l  153 (185)
                      +.++..+
T Consensus       171 ~~~i~~L  177 (343)
T PRK09039        171 QAKIADL  177 (343)
T ss_pred             HHHHHHH
Confidence            3333333

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=81.42  E-value=6.8  Score=33.98  Aligned_cols=50  Identities=14%  Similarity=0.279  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus       104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      |+.+...+..+-..|..+++.....+..+..++..|+.+...+......+
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL  198 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL  198 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            44444444444445555555555555555555555555555554444333

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=81.40  E-value=28  Score=30.90  Aligned_cols=69  Identities=13%  Similarity=0.277  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 029952          104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVTSAWPCNSAV  175 (185)
Q Consensus       104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~~~~~~~~~~~~~  175 (185)
                      +..-+-....+|+.+..++..-++....++.+...|++++..|+....+.+.++ |..+  +--..-|++-|
T Consensus       177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i-F~dv--ll~rpKCTPDm  245 (258)
T PF15397_consen  177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI-FADV--LLRRPKCTPDM  245 (258)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh-hHHH--hcCCCCCCCCc
Confidence            344566677899999999999999999999999999999999999998776654 2222  22334598854

>PRK02793 phi X174 lysis protein; Provisional

Probab=81.26  E-value=14  Score=26.38  Aligned_cols=48  Identities=15%  Similarity=0.110  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTIL  146 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~L  146 (185)
                      +++.+||.++..++.-...|...+..-..++..|..+=..|..++..+
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~   55 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS   55 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            355666666666666666666665555555555555555555555443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=81.21  E-value=19  Score=31.46  Aligned_cols=41  Identities=12%  Similarity=0.051  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      |..+|+.|+.++..|..+++++.-++..+.+|-.++.+-|.
T Consensus        59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld   99 (263)
T PRK10803         59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID   99 (263)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444443333

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=81.13  E-value=9.8  Score=32.28  Aligned_cols=40  Identities=10%  Similarity=0.182  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          121 RLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus       121 ~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      ++..|..+...+...|-.+...+..|+..+..+.+-..-.
T Consensus       176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~  215 (221)
T PF05700_consen  176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL  215 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556666666666666666666666655544433

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=81.10  E-value=19  Score=35.35  Aligned_cols=57  Identities=19%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      .++.+++|+.++..|..+...+..++..+...+..+..|....+.+..+|...+.-.
T Consensus       326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~  382 (594)
T PF05667_consen  326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK  382 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666666666665555555555555555555555555555555554444433

>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins

Probab=81.07  E-value=3.1  Score=32.98  Aligned_cols=28  Identities=39%  Similarity=0.661  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRLRF  124 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~  124 (185)
                      |..-+++|..++..|+.||..|+.++..
T Consensus         1 k~~t~EeLaaeL~kLqmENk~LKkkl~~   28 (118)
T PF05812_consen    1 KDMTMEELAAELQKLQMENKALKKKLRQ   28 (118)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4567899999999999999999998764

; PDB: 2OA5_B 2H3R_D.

>PF13935 Ead_Ea22: Ead/Ea22-like protein

Probab=80.69  E-value=16  Score=28.89  Aligned_cols=23  Identities=13%  Similarity=0.296  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 029952          131 RVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus       131 ~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      ....++......+..+..|+..|
T Consensus       116 ~~~~~~~~~e~~~~~~~~riaEl  138 (139)
T PF13935_consen  116 ELAEQAEAYEGEIADYAKRIAEL  138 (139)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhc
Confidence            33444444555556666665544

>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins

Probab=80.57  E-value=2.1  Score=28.25  Aligned_cols=31  Identities=23%  Similarity=0.280  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          111 LRMENRELSNRLRFALHHCQRVRTDNDRLRS  141 (185)
Q Consensus       111 L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra  141 (185)
                      |-..|..|..++..+...+..|..||..||+
T Consensus        12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~   42 (46)
T PF07558_consen   12 LAKRNSALSIKIQELENEVSKLLNENVNLRE   42 (46)
T ss_dssp             ------------------HHHHHHHHHHHHH
T ss_pred             HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444443

Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=80.55  E-value=0.27  Score=45.34  Aligned_cols=46  Identities=35%  Similarity=0.440  Sum_probs=40.1

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELS  119 (185)
Q Consensus        74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~  119 (185)
                      ..|+|++|=.++||.||-++|.|||.....|+.+...+..+|..|.
T Consensus       281 ~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~  326 (395)
T KOG1414|consen  281 DPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL  326 (395)
T ss_pred             CchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence            3466664448999999999999999999999999999999988876

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=80.49  E-value=21  Score=26.43  Aligned_cols=75  Identities=19%  Similarity=0.272  Sum_probs=35.8

Q ss_pred             HhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 029952           85 SNRESARRSRMRKQ------KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRT---DNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus        85 sNRESARRSR~RKk------~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~---EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      .|.+..+.+-.+|.      ..+.+|..+...+..+-..|+.+-..+..++..+..   +-..|+++...|+.++..+..
T Consensus         9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~   88 (108)
T PF02403_consen    9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE   88 (108)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence            35555555555442      334444455555555555555554444444444333   234455555555555555544


Q ss_pred             HHHH
Q 029952          156 ILLY  159 (185)
Q Consensus       156 il~~  159 (185)
                      .+.-
T Consensus        89 ~~~~   92 (108)
T PF02403_consen   89 QLKE   92 (108)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=80.49  E-value=38  Score=37.86  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          127 HHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus       127 ~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      ...+.|+..+..|-.++.+|+..|..+..
T Consensus      1512 k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1512 KRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555544

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=80.23  E-value=18  Score=25.44  Aligned_cols=40  Identities=20%  Similarity=0.400  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          107 QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus       107 qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      ++...+..|..+..++..       .+..|..|..++..|+.++..+
T Consensus        19 EL~kvk~~n~~~e~kLqe-------aE~rn~eL~~ei~~L~~e~ee~   58 (61)
T PF08826_consen   19 ELTKVKSANLAFESKLQE-------AEKRNRELEQEIERLKKEMEEL   58 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence            344455555555555544       4444555555555555544443

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=80.05  E-value=27  Score=30.28  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          108 LNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS  151 (185)
Q Consensus       108 V~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~  151 (185)
                      +..++.++..++..++.|..++..+...|..|...+.+|..++.
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~  254 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD  254 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence            44444555555555555555555555555555555554444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	6e-10
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	5e-08
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	8e-08
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	4e-07
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	3e-06
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	9e-06
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	4e-05
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	8e-05
2wt7_B	90	Transcription factor MAFB; transcription, transcri	2e-04
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	3e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 52.0 bits (125), Expect = 6e-10
 Identities = 15/46 (32%), Positives = 32/46 (69%)

Query: 78  RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLR 123
           ++  R++ NRE+AR SR +K++++++L N++  L  +N+ L   L+
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELK 46

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 47.0 bits (112), Expect = 5e-08
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 14/76 (18%)

Query: 78  RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDND 137
           +K ++M  N+ +A R R +K+   E L  +   L  +N  L  R               D
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERA--------------D 47

Query: 138 RLRSEHTILRRRLSEI 153
            L  E   L+  + E+
Sbjct: 48  SLAKEIQYLKDLIEEV 63

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 46.2 bits (110), Expect = 8e-08
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 78  RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDND 137
           ++R+ +  NR +A RSR +++  +++L  +   L   N +L + +         +R +  
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEV-------TLLRNEVA 53

Query: 138 RLRSE 142
           +L+  
Sbjct: 54  QLKQL 58

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 44.4 bits (105), Expect = 4e-07
 Identities = 12/58 (20%), Positives = 29/58 (50%)

Query: 77  ERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRT 134
           E++R R   N+ +A + R R+++  + L+ + ++L  E   L   +   L   +++  
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 42.0 bits (99), Expect = 3e-06
 Identities = 13/45 (28%), Positives = 26/45 (57%)

Query: 78  RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRL 122
           +  R+ + NR +A +SR RK + +  L  ++  L+ +N EL++  
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTA 45

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 42.0 bits (98), Expect = 9e-06
 Identities = 17/75 (22%), Positives = 34/75 (45%)

Query: 74  VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVR 133
           +I  ++RRR + NR  A   R+++    E L  Q   L+ E  +L++           +R
Sbjct: 33  IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALR 92

Query: 134 TDNDRLRSEHTILRR 148
           +  + L++    + R
Sbjct: 93  SKYEALQNFARTVAR 107

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 39.0 bits (91), Expect = 4e-05
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 77  ERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRL 122
             KR R   N E+ARRSR RK + ++ L +++  L  +N  L N +
Sbjct: 11  ALKRAR---NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEV 53

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 38.5 bits (89), Expect = 8e-05
 Identities = 14/65 (21%), Positives = 27/65 (41%)

Query: 76  DERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTD 135
            E   +R   NR + R  R RK+ HL+ L  Q+  L+  +   +          +++  +
Sbjct: 6   QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65

Query: 136 NDRLR 140
              L+
Sbjct: 66  LRILK 70

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 11/64 (17%), Positives = 30/64 (46%)

Query: 78  RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDND 137
           +++RR + NR  A+  R ++ +   +L N+  +L  +  +L   +          +  ++
Sbjct: 27  KQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86

Query: 138 RLRS 141
           +L +
Sbjct: 87  KLAN 90

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 14/83 (16%)

Query: 76  DERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTD 135
            +  + R   N  + R+SR + +      ++++  L  EN  L  ++             
Sbjct: 13  SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV------------- 59

Query: 136 NDRLRSEHTILRRRLSEIRQILL 158
            ++L  E + LR    ++ + LL
Sbjct: 60  -EQLSRELSTLRNLFKQLPEPLL 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.56
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.4
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.31
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.3
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.24
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	99.17
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	99.06
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.84
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.83
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.5
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.17
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.3
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	97.05
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	96.32
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	96.02
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.98
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	95.74
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.71
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	95.15
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	94.56
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	94.35
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	94.23
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	94.06
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	93.77
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	93.65
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.46
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	93.31
3m48_A	33	General control protein GCN4; leucine zipper, synt	93.02
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	92.87
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	92.57
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	92.37
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	92.29
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	92.29
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	92.13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.08
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	92.08
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	91.6
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	91.6
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	90.76
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	90.63
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	90.55
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	90.42
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	90.35
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	90.08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.05
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	89.73
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	89.72
3ra3_A	28	P1C; coiled coil domain, fiber, KIH interactions,	89.53
2bni_A	34	General control protein GCN4; four helix bundle, a	89.52
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	89.42
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	89.39
1uo4_A	34	General control protein GCN4; four helix bundle, c	89.2
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	89.17
2hy6_A	34	General control protein GCN4; protein design, para	89.15
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	89.11
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.87
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	88.32
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	88.23
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	87.98
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	87.78
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	87.46
1p9i_A	31	Cortexillin I/GCN4 hybrid peptide; coiled-coil, un	87.36
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	87.0
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	86.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	86.56
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	86.0
1fmh_A	33	General control protein GCN4; coiled coil, leucine	85.97
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	85.86
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	85.77
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	85.46
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	85.43
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	85.32
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	85.3
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	85.19
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	85.13
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	84.96
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	84.86
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	84.69
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	84.14
2wvr_A	209	Geminin; DNA replication license, DNA replication	84.09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	83.87
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	83.83
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	83.78
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	83.57
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	83.53
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	83.36
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	83.23
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	83.08
2wt7_B	90	Transcription factor MAFB; transcription, transcri	83.01
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	82.8
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	82.48
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	82.38
3u06_A	412	Protein claret segregational; motor domain, stalk	82.33
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	81.86
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	81.84
3ra3_B	28	P2F; coiled coil domain, fiber, KIH interactions,	81.64
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	81.6
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	81.39
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	81.16
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	80.75
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	80.66
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	80.1

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.56  E-value=4.6e-15  Score=100.82  Aligned_cols=52  Identities=29%  Similarity=0.464  Sum_probs=48.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC  129 (185)
Q Consensus        78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~  129 (185)
                      |+.+|+++||+||++||+||++|+++|+.+|..|+.+|..|..++..|.+.+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999999999999988877654

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.40  E-value=1.3e-12  Score=90.42  Aligned_cols=53  Identities=23%  Similarity=0.343  Sum_probs=46.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           77 ERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC  129 (185)
Q Consensus        77 eRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~  129 (185)
                      |||.+|+++||+||++||.||++++.+|+.+|..|+.+|..|..++..|..++
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~   53 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK   53 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999988876444433

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.31  E-value=3.5e-12  Score=88.74  Aligned_cols=51  Identities=27%  Similarity=0.349  Sum_probs=42.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           79 KRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC  129 (185)
Q Consensus        79 k~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~  129 (185)
                      ..++..+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|++.+
T Consensus        10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445699999999999999999999999999999999888887776654

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.30  E-value=1.2e-11  Score=84.81  Aligned_cols=50  Identities=22%  Similarity=0.387  Sum_probs=44.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus        78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      ||.+|+++||+||++||.||++++++|+.+|..|+.+|..|..++..|..
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~   50 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN   50 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999998887764444

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.24  E-value=2e-11  Score=84.11  Aligned_cols=49  Identities=27%  Similarity=0.437  Sum_probs=43.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           79 KRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus        79 k~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      +.||+.+||+||++||.||+.++.+|+.+|..|+.+|..|..++..|..
T Consensus         2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~   50 (62)
T 1jnm_A            2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE   50 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678889999999999999999999999999999999999888765444

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=99.17  E-value=1e-10  Score=83.12  Aligned_cols=61  Identities=21%  Similarity=0.256  Sum_probs=50.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           79 KRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL  139 (185)
Q Consensus        79 k~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L  139 (185)
                      ..||+..||.|+|.+|.||++|+.+|+.+|..|+..+..|..++..|...+..|..||..|
T Consensus         9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l   69 (70)
T 1gd2_E            9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL   69 (70)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4688899999999999999999999999999999999887766666666666665555544

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=99.06  E-value=5.7e-10  Score=77.34  Aligned_cols=57  Identities=25%  Similarity=0.370  Sum_probs=43.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRS  141 (185)
Q Consensus        78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra  141 (185)
                      |+.+++.+||.||+|+|.||+.++.+|+.++..|+.+|..|..++..       |..|+..|+.
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~-------L~~E~~~Lk~   58 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADS-------LAKEIQYLKD   58 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence            56788899999999999999999999999999999999999888754       3445555544

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.84  E-value=2e-08  Score=72.54  Aligned_cols=54  Identities=17%  Similarity=0.175  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus        74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      ..|+....|..+|.+||+|||.+++....+++.++..|+.+|..|..++..|..
T Consensus        11 k~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~   64 (78)
T 1gu4_A           11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR   64 (78)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777789999999999999999999999999999999888877764433

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.83  E-value=2.4e-08  Score=73.49  Aligned_cols=52  Identities=17%  Similarity=0.202  Sum_probs=44.6

Q ss_pred             chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           73 SVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRF  124 (185)
Q Consensus        73 ~~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~  124 (185)
                      +..|++...|..+|.+||+|||.+++..-.+++.++..|+.+|..|+.+|..
T Consensus        10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~   61 (87)
T 1hjb_A           10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ   61 (87)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446677777889999999999999999999999999999988888777653

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.50  E-value=2.6e-09  Score=81.43  Aligned_cols=69  Identities=26%  Similarity=0.451  Sum_probs=48.1

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus        74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      ..+-|..||.++||.+|+.+|.||..++++||.++..|..+...|              ..||..|+.|+..|+.++..|
T Consensus        33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L--------------~~En~~l~~E~~~lk~k~e~L   98 (107)
T 3a5t_A           33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL--------------ASENASMKLELDALRSKYEAL   98 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT--------------TSTTSHHHHTTTSSSSCC---
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence            344577899999999999999999999999998777765554444              446666666666666666665


Q ss_pred             HHH
Q 029952          154 RQI  156 (185)
Q Consensus       154 ~~i  156 (185)
                      ...
T Consensus        99 ~~~  101 (107)
T 3a5t_A           99 QNF  101 (107)
T ss_dssp             ---
T ss_pred             HHH
Confidence            543

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.17  E-value=1.4e-05  Score=59.09  Aligned_cols=66  Identities=23%  Similarity=0.390  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus        74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      ...-|..||.++||.+|+-+|.||.....+||.++..|..+-..|.              .||..+..|...+++++..|
T Consensus        23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~--------------~e~~~~~~e~d~~k~k~~~L   88 (90)
T 2wt7_B           23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLK--------------QEVSRLARERDAYKVKSEKL   88 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHh
Confidence            4556678999999999999999999999999988888766655554              45666667777777776654

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.30  E-value=0.00072  Score=43.43  Aligned_cols=38  Identities=32%  Similarity=0.475  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSE  142 (185)
Q Consensus        98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae  142 (185)
                      |+|+.+||.++++|+..|.+|..++.       .|..||..||.-
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervs-------tLq~EN~mLRqv   39 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLS-------TLQNENQMLRHI   39 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHH
Confidence            68999999999999999999888775       566688888753

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=97.05  E-value=0.0048  Score=44.74  Aligned_cols=57  Identities=19%  Similarity=0.344  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI  156 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i  156 (185)
                      .+.-|+.+++.|+.+|..|..+++.+......|..||.+|+.|......||..|-.-
T Consensus        21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk   77 (81)
T 2jee_A           21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344566677778888888888888888888889999999999999999998877543

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=96.32  E-value=0.0019  Score=47.77  Aligned_cols=33  Identities=27%  Similarity=0.279  Sum_probs=27.7

Q ss_pred             chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 029952           73 SVIDERKRRRMISNRESARRSRMRKQKHLENLR  105 (185)
Q Consensus        73 ~~~deRk~RR~lsNRESARRSR~RKk~~l~eLe  105 (185)
                      .....|..||..+||.+|+++|.||....+.|+
T Consensus        57 Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~   89 (92)
T 1skn_P           57 QRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMS   89 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence            345677889999999999999999999888765

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=96.02  E-value=0.029  Score=37.48  Aligned_cols=47  Identities=23%  Similarity=0.386  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR  147 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr  147 (185)
                      .+.|-.||+.|+.||..|+.++..=..++..|+.|-.-+++-+..|.
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq   51 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ   51 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence            47889999999999999999999999999888888877766555444

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.98  E-value=0.095  Score=40.88  Aligned_cols=62  Identities=16%  Similarity=0.206  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL  157 (185)
Q Consensus        96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il  157 (185)
                      +.+...+.|+.++..+..+...|+.++..+..++..+..++..|+.++..|..++..|..-+
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~  133 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL  133 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456778888888888888888888888888888888888888888888888887776544

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=95.74  E-value=0.064  Score=40.29  Aligned_cols=50  Identities=30%  Similarity=0.387  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSN-------RLRFALHHCQRVRTDNDRLRSEHTILRR  148 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~-------~l~~L~~~~~~L~~EN~~Lrae~~~Lr~  148 (185)
                      +..-+|+.++..|+.+|..|+.       ++..|..++..|..||..|+.|....++
T Consensus        37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~   93 (104)
T 3s9g_A           37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ   93 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3445688888888888888777       6666777777777777777777665443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.71  E-value=0.17  Score=36.60  Aligned_cols=57  Identities=9%  Similarity=0.112  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      .-++.|+.+|..+-....-|+.++..|+++...|..+|..++.....|.+....|.+
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~   62 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE   62 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            357889999999999888888899999998888888888866655555555444443

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=95.15  E-value=0.11  Score=35.79  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRS  141 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra  141 (185)
                      +..-|.+|.+|.+-|..|..++..+...++.|..||..||.
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            34557889999999999999999999999999999998873

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=94.56  E-value=0.12  Score=37.67  Aligned_cols=39  Identities=23%  Similarity=0.311  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          122 LRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus       122 l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      ...+......|+.||..|+.++..|...+..|..+|...
T Consensus        38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~   76 (87)
T 1hjb_A           38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL   76 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            344566778888899999999999999999888887753

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=94.35  E-value=0.14  Score=34.35  Aligned_cols=39  Identities=26%  Similarity=0.411  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      ..+..|...+..|..+|..|+.++..|+..+..|.++|.
T Consensus        22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll   60 (61)
T 1t2k_D           22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            346667777888889999999999999999999888774

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=94.23  E-value=0.18  Score=34.21  Aligned_cols=40  Identities=10%  Similarity=0.299  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          119 SNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       119 ~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      ..+...|..++..|..+|..|+.++..|+..+..|.++|.
T Consensus        22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~   61 (63)
T 1ci6_A           22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456777888889999999999999999999999998875

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=94.06  E-value=0.86  Score=30.67  Aligned_cols=39  Identities=13%  Similarity=0.147  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      ..+..|..++..|..+|..|+.++..|+..+..|.++|.
T Consensus        23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~   61 (63)
T 2wt7_A           23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677778889999999999999999999999988875

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=93.77  E-value=0.22  Score=37.24  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      .+..|..+++.|+.||..|+.++..|.-
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~   40 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEA   40 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566677777777777777777666553

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=93.65  E-value=0.26  Score=32.42  Aligned_cols=37  Identities=22%  Similarity=0.404  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          105 RNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRS  141 (185)
Q Consensus       105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra  141 (185)
                      +.++..|+.-|..|..++..|...|..++.|+.+|+.
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~   39 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK   39 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            6788999999999999999999999999999988874

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.46  E-value=1.1  Score=34.88  Aligned_cols=58  Identities=7%  Similarity=0.102  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus       103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      .+..++..|+.+...+..++..|++++..+..++..+..++.+|+.++..|..-+.-.
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666666666666666666666666666666666666666666666666555443

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=93.31  E-value=0.14  Score=36.52  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          122 LRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       122 l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      ...+...+..|+.||..|+.++..|+..+..|.++|.
T Consensus        38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~   74 (78)
T 1gu4_A           38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566777788888888888888888888877664

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=93.02  E-value=0.12  Score=31.50  Aligned_cols=27  Identities=19%  Similarity=0.256  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      |..||.+|+.|-.+|..|..++..|+.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            567888888888888777777765554

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=92.87  E-value=1.1  Score=32.05  Aligned_cols=61  Identities=13%  Similarity=0.266  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL  157 (185)
Q Consensus        97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il  157 (185)
                      =++.+..-..++..|+.-..+|..--..|..-+..|..|-..|...+..|+.+...|..++
T Consensus        16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l   76 (78)
T 3iv1_A           16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3567778888888888888888888888888899999999999999999999999887654

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=92.57  E-value=0.16  Score=34.13  Aligned_cols=39  Identities=18%  Similarity=0.405  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      ..+..|...+..|..+|..|+.++..|+..+..|.++|.
T Consensus        22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~   60 (62)
T 1jnm_A           22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM   60 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777888888999999999999988888877764

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=92.37  E-value=0.91  Score=30.77  Aligned_cols=37  Identities=30%  Similarity=0.373  Sum_probs=25.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           82 RMISNRESARRSRMRKQKHLENLRNQLNRLRMENREL  118 (185)
Q Consensus        82 R~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L  118 (185)
                      ..-+||.++|++|.|=++.++....-.+.-..||..|
T Consensus         5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rl   41 (63)
T 2c9l_Y            5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL   41 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence            3468999999999998887776654444444444444

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=92.29  E-value=1.1  Score=31.67  Aligned_cols=48  Identities=19%  Similarity=0.316  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR  149 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r  149 (185)
                      .++..++..++.+|+.|..++..+...+..-..+-..++.++..+-..
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~   50 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI   50 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999998888877777777776655443

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=92.29  E-value=0.2  Score=30.63  Aligned_cols=28  Identities=14%  Similarity=0.183  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      ++..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~   29 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKX   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            4667888888877777777766655543

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=92.13  E-value=0.3  Score=30.23  Aligned_cols=29  Identities=14%  Similarity=0.279  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALHH  128 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~  128 (185)
                      +|..|+.+|+.|-.+|..|..++..|+.-
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l   30 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKK   30 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            46788888888888888888777666553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.08  E-value=1.5  Score=39.38  Aligned_cols=57  Identities=16%  Similarity=0.156  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      +.+..++.+.+.++.+++.+.++++...+.+..++.|...|+.+..+-++++..+.+
T Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~  565 (597)
T 3oja_B          509 KVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQ  565 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence            344455555555666666666666666666665556666555555544444444443

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=92.08  E-value=0.5  Score=33.91  Aligned_cols=50  Identities=24%  Similarity=0.326  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL  150 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL  150 (185)
                      .+++..++..++.+|+.|..++..+...+..-..+-..++.|+..+-..|
T Consensus         8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L   57 (79)
T 3cvf_A            8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL   57 (79)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677899999999999999999999988887777777777776654433

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=91.60  E-value=0.58  Score=31.64  Aligned_cols=37  Identities=24%  Similarity=0.417  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          105 RNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRS  141 (185)
Q Consensus       105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra  141 (185)
                      +.++..|+..|-.|..+++.|..+|...+.|+.+|..
T Consensus        10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~   46 (58)
T 3a2a_A           10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK   46 (58)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677788888888999998888888888888888764

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=91.60  E-value=2.5  Score=33.71  Aligned_cols=46  Identities=7%  Similarity=0.023  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHT  144 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~  144 (185)
                      ..+.+-..-+..|..|...|..++..+..+...|..||..|-...+
T Consensus        89 eel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM  134 (152)
T 3a7p_A           89 EVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL  134 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555566666666666666666666666666655544433

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=90.76  E-value=0.37  Score=29.45  Aligned_cols=28  Identities=7%  Similarity=0.099  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      +|..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~   29 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4667788888877777777776665543

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=90.63  E-value=2.7  Score=31.75  Aligned_cols=53  Identities=13%  Similarity=0.146  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      +..|+.++..|+..+..|...+..|......|+...+.--+-+..+..++...
T Consensus        37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a   89 (111)
T 2v66_B           37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA   89 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence            45566666666666666666666666666666666666666666666655543

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=90.55  E-value=2.9  Score=30.25  Aligned_cols=21  Identities=19%  Similarity=0.192  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 029952          106 NQLNRLRMENRELSNRLRFAL  126 (185)
Q Consensus       106 ~qV~~L~~eN~~L~~~l~~L~  126 (185)
                      .+|..|+.+|..|..++..+.
T Consensus        23 dKVR~LEqqN~~Le~~i~~l~   43 (93)
T 3s4r_A           23 DKVRFLEQQNKILLAELEQLK   43 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            456666666666655554444

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=90.42  E-value=0.33  Score=30.02  Aligned_cols=29  Identities=14%  Similarity=0.213  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALHH  128 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~  128 (185)
                      +|..|+.+|+.|-.+|..|..++..|+.-
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l   30 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKE   30 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            46778888888888888888777666553

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.35  E-value=2.5  Score=31.39  Aligned_cols=47  Identities=17%  Similarity=0.204  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR  148 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~  148 (185)
                      ..|+.++.....+...|..++..-......++.++..+..|+.+|..
T Consensus        15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa   61 (97)
T 2eqb_B           15 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA   61 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444433

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=90.08  E-value=0.46  Score=28.86  Aligned_cols=27  Identities=11%  Similarity=0.158  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      +..||.+|+.|-.+|..|..++..|+.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~   28 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKX   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            567777888777777777766665543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.05  E-value=5.2  Score=40.09  Aligned_cols=27  Identities=15%  Similarity=0.276  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFA  125 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L  125 (185)
                      ..+..|+.+++.|+.+.+++..+...+
T Consensus       984 ~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A          984 NRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444333333

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=89.73  E-value=1.7  Score=27.86  Aligned_cols=44  Identities=23%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL  150 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL  150 (185)
                      .+..|+.+|..|+.+|..|+.+.---+.-+.       -|..|++.||.++
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdlia-------ylekeianlrkki   47 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIA-------YLEKEIANLRKKI   47 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHH-------HHHHHHHHHHHHh
Confidence            4678899999999999988876533222222       3455556666554

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=89.72  E-value=0.69  Score=32.27  Aligned_cols=31  Identities=19%  Similarity=0.163  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          122 LRFALHHCQRVRTDNDRLRSEHTILRRRLSE  152 (185)
Q Consensus       122 l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~  152 (185)
                      +..|......+..||..|+.++..|...+..
T Consensus        38 v~~le~~~~~l~~en~~Lr~~i~~L~~El~~   68 (70)
T 1gd2_E           38 VVTLKELHSSTTLENDQLRQKVRQLEEELRI   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334445566676777666666666543

>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=89.53  E-value=0.46  Score=27.42  Aligned_cols=25  Identities=16%  Similarity=0.465  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          130 QRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus       130 ~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      ..|+-||..|...++.|++++.+|.
T Consensus         3 dalefendaleqkiaalkqkiaslk   27 (28)
T 3ra3_A            3 DALEFENDALEQKIAALKQKIASLK   27 (28)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHhccHHHHHHHHHHHHHHHHhc
Confidence            3566788888888888888877764

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=89.52  E-value=0.49  Score=28.94  Aligned_cols=28  Identities=11%  Similarity=0.291  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      +|..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            4567888888887777777777665544

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=89.42  E-value=2.4  Score=32.60  Aligned_cols=51  Identities=22%  Similarity=0.331  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE  152 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~  152 (185)
                      +.|+.+..+-....++|..+|..|.+++....+|-.+||.+...|..|+.+
T Consensus        60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~  110 (121)
T 3mq7_A           60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD  110 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence            344444444445566777777777777777777777777777777776644

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=89.39  E-value=7  Score=31.10  Aligned_cols=60  Identities=15%  Similarity=0.173  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           93 SRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE  152 (185)
Q Consensus        93 SR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~  152 (185)
                      -+......+.+|+..+..-...++.|..++..|.-++..++.....|..|...|-+||-.
T Consensus        76 El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~  135 (152)
T 3a7p_A           76 ELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK  135 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666677777777777777888888888888888888888888888888777643

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=89.20  E-value=0.54  Score=28.77  Aligned_cols=28  Identities=7%  Similarity=0.124  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      +|..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~   29 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3567888888888877777777765554

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=89.17  E-value=3.2  Score=29.42  Aligned_cols=59  Identities=22%  Similarity=0.222  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           98 QKHLENLRNQLNRLRMENRELSNRLRFA------LHHCQRVRTDNDRLRSEHTILRRRLSEIRQI  156 (185)
Q Consensus        98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L------~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i  156 (185)
                      ++.++.|+.++..|+.+...|..++..-      -..+..+..+-..+..++..+-.|+..|..+
T Consensus        21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~   85 (89)
T 2lw1_A           21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL   85 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4568999999999999999999988631      2456777888888888999999998887654

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=89.15  E-value=0.54  Score=28.72  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      ++..|+.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~   29 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4677888888888888887777766554

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=89.11  E-value=1.3  Score=31.26  Aligned_cols=48  Identities=23%  Similarity=0.186  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      ++.+||.+++.++.-...|.       ..+..-..+-..|+.++..|..|+..+.
T Consensus        15 Ri~~LE~klAfqE~tIeeLn-------~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           15 RLVELETRLSFQEQALTELS-------EALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44555555555555444444       4444444455566666666666666654

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.87  E-value=5.7  Score=32.52  Aligned_cols=21  Identities=19%  Similarity=0.287  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 029952          134 TDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus       134 ~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      .|...|+.....|+.+|..|+
T Consensus        95 ~el~~l~~~~~~l~~~ireLE  115 (189)
T 2v71_A           95 DDLSQTRAIKEQLHKYVRELE  115 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444433

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=88.32  E-value=0.033  Score=41.06  Aligned_cols=24  Identities=33%  Similarity=0.238  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHH
Q 029952           75 IDERKRRRMISNRESARRSRMRKQ   98 (185)
Q Consensus        75 ~deRk~RR~lsNRESARRSR~RKk   98 (185)
                      ..-|..||.-+||.+|+++|.||.
T Consensus        63 ~lIrdiRRRgKNKvAAqnCRKRKl   86 (91)
T 2kz5_A           63 ALVRDIRRRGKNKVAAQNYRKRKL   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHH
Confidence            345678999999999999999985

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=88.23  E-value=0.76  Score=27.91  Aligned_cols=27  Identities=7%  Similarity=0.126  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      |..||.+|+.|-.+|..|..++..|+.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~   28 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            567888888888888888777765544

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=87.98  E-value=1.3  Score=31.68  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          113 MENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR  147 (185)
Q Consensus       113 ~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr  147 (185)
                      .||.+|+.++..+.+.+..|..||..|+.-....+
T Consensus        34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~   68 (79)
T 2zxx_A           34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ   68 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999988864444333

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=87.78  E-value=0.8  Score=31.09  Aligned_cols=32  Identities=16%  Similarity=0.263  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLS  151 (185)
Q Consensus       120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~  151 (185)
                      ..+..|..++..|..+|..|+.++..|+..|.
T Consensus        30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566677777788888888888888877653

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=87.46  E-value=1.3  Score=27.50  Aligned_cols=29  Identities=21%  Similarity=0.312  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          112 RMENRELSNRLRFALHHCQRVRTDNDRLR  140 (185)
Q Consensus       112 ~~eN~~L~~~l~~L~~~~~~L~~EN~~Lr  140 (185)
                      -.||.+|+..+..-.+++..|..||..|.
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~   34 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKELA   34 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            36899999999999999999999997775

>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1

Probab=87.36  E-value=0.73  Score=27.12  Aligned_cols=23  Identities=13%  Similarity=0.254  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 029952          128 HCQRVRTDNDRLRSEHTILRRRL  150 (185)
Q Consensus       128 ~~~~L~~EN~~Lrae~~~Lr~rL  150 (185)
                      -+..|++||.+|++...+|-.++
T Consensus         7 llasleaenkqlkakveellakv   29 (31)
T 1p9i_A            7 LLASLEAENKQLKAKVEELLAKV   29 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            34667888888888888776665

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=87.00  E-value=5.8  Score=28.33  Aligned_cols=37  Identities=16%  Similarity=0.192  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDND  137 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~  137 (185)
                      +-+|..++..|+.|...|+..++.+..++..+.....
T Consensus        22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr   58 (83)
T 2xdj_A           22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK   58 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666666666655555544443

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=86.86  E-value=1  Score=38.58  Aligned_cols=40  Identities=23%  Similarity=0.390  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDR  138 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~  138 (185)
                      ..+.+|+.++..|...|..|...+..++.++..|..|+.+
T Consensus        54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler   93 (251)
T 3m9b_A           54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR   93 (251)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666666655555444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.56  E-value=5.4  Score=35.78  Aligned_cols=57  Identities=14%  Similarity=0.189  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      +.++..+..++...+.+..++..+++.......+-+.|+.+..+|+.+++...+.+.
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~  561 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQA  561 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence            445555556666666666666666666666666666666666667776666666665

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=86.00  E-value=8.5  Score=28.34  Aligned_cols=72  Identities=14%  Similarity=0.227  Sum_probs=55.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           84 ISNRESARRSRMRKQKHLENLRNQLNRLR---MENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus        84 lsNRESARRSR~RKk~~l~eLe~qV~~L~---~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      ..|-.+|-..=..|+..+++|...+..++   ..+..|+.++......+..-.+.=.++..+...|...|..+..
T Consensus         8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~   82 (94)
T 3jsv_C            8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR   82 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34556666777779999999999888888   6677788888888888887777777777777777777666544

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=85.97  E-value=1.7  Score=25.83  Aligned_cols=29  Identities=21%  Similarity=0.415  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHC  129 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~  129 (185)
                      +..|+.+|.+.+.+|-.|..++..|...|
T Consensus         3 vaqlekevaqaeaenyqleqevaqlehec   31 (33)
T 1fmh_A            3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            44566667666666666666655554443

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=85.86  E-value=5.8  Score=29.63  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           98 QKHLENLRNQLNRLRMENRELSNRLRFA  125 (185)
Q Consensus        98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L  125 (185)
                      -..+.+|+.+|..|+.||+.|..+...-
T Consensus        64 ~~~v~eLe~everL~~ENq~L~~e~~~~   91 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLLTENELH   91 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4678889999999999998887765443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=85.77  E-value=9.7  Score=28.78  Aligned_cols=71  Identities=14%  Similarity=0.244  Sum_probs=52.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           84 ISNRESARRSRMRKQKHLENLRNQLNRLRM---ENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus        84 lsNRESARRSR~RKk~~l~eLe~qV~~L~~---eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      ..|=.+|-..=..|+..+++|..++..++.   ....|+.++......+..-.+.=..+-.+...|...|..|.
T Consensus        30 ~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq  103 (110)
T 2v4h_A           30 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ  103 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence            445566777777799999999999888888   66778888888877777666666666666666666666554

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=85.46  E-value=3.5  Score=29.18  Aligned_cols=49  Identities=18%  Similarity=0.271  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      ++||.+|+.|+.--..|+.++..|..++..          -...|++||..|+..+.-.
T Consensus         3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s----------sQ~KLKqRit~LE~~~~~~   51 (74)
T 3swf_A            3 MGLEEKVTRMESSVDLLQTRFARILAEYES----------MQQKLKQRLTKVEKFLKPL   51 (74)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhccc
Confidence            457777777766666666665554443322          2256777777777766653

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=85.43  E-value=4.5  Score=26.58  Aligned_cols=29  Identities=21%  Similarity=0.339  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          101 LENLRNQLNRLRMENRELSNRLRFALHHC  129 (185)
Q Consensus       101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~  129 (185)
                      +.+|..++..|...|.+|...+...+.++
T Consensus        11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el   39 (51)
T 3m91_A           11 IHQLEARIDSLAARNSKLMETLKEARQQL   39 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666666665554443333

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=85.32  E-value=8.1  Score=27.50  Aligned_cols=57  Identities=21%  Similarity=0.245  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      .++..+|..|-.||.+|...-..|.-.-..|-+.-..|-.|...|+..|.++.+...
T Consensus         5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~   61 (77)
T 2w83_C            5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKL   61 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            466778888888898887765555444444444444444444444444444444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=85.30  E-value=8.9  Score=38.37  Aligned_cols=14  Identities=14%  Similarity=0.154  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHHH
Q 029952          136 NDRLRSEHTILRRR  149 (185)
Q Consensus       136 N~~Lrae~~~Lr~r  149 (185)
                      ...|..++.+|..+
T Consensus       922 ~~~Le~~l~ele~e  935 (1184)
T 1i84_S          922 KQELEEILHEMEAR  935 (1184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=85.19  E-value=5.7  Score=25.61  Aligned_cols=43  Identities=19%  Similarity=0.325  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus       103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      ++|.+|+.|+.--..|..++..|..++.          +-...|++||..|+.
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~----------ssq~KlKqRit~lE~   44 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYN----------ATQMKMKQRLSQLES   44 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence            5677777776666666655554444332          222567777777764

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=85.13  E-value=7.6  Score=27.00  Aligned_cols=53  Identities=9%  Similarity=0.119  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS  151 (185)
Q Consensus        99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~  151 (185)
                      ..++.++.++...+.....+..++..|..++..++.+=......+.....+|.
T Consensus        20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe   72 (81)
T 1ic2_A           20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555444444444444444443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=84.96  E-value=9.2  Score=27.80  Aligned_cols=60  Identities=8%  Similarity=0.041  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus        96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      .-....+.++.++..++..+..+..++..|..++..++.+=..+...+.....+|..-..
T Consensus        20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek   79 (101)
T 3u1c_A           20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE   79 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666667777777777777777777777766666666666666555555554443

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=84.86  E-value=2.1  Score=31.90  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE  152 (185)
Q Consensus       120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~  152 (185)
                      .++..++.++..|+.||..|+.++..|..+|+.
T Consensus        12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~   44 (100)
T 1go4_E           12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER   44 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467778888888888998888888888887754

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=84.69  E-value=2  Score=28.25  Aligned_cols=17  Identities=24%  Similarity=0.470  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 029952          106 NQLNRLRMENRELSNRL  122 (185)
Q Consensus       106 ~qV~~L~~eN~~L~~~l  122 (185)
                      ..|+.|+.||..|+.++
T Consensus        19 ~d~eaLk~E~~eLk~k~   35 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKY   35 (53)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            34455555555544443

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=84.14  E-value=6  Score=25.95  Aligned_cols=17  Identities=18%  Similarity=0.284  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 029952          106 NQLNRLRMENRELSNRL  122 (185)
Q Consensus       106 ~qV~~L~~eN~~L~~~l  122 (185)
                      .++..|+.++..|..++
T Consensus         9 ~r~~~l~~~l~~L~~rN   25 (51)
T 3m91_A            9 RDIHQLEARIDSLAARN   25 (51)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444433

>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}

Probab=84.09  E-value=11  Score=31.49  Aligned_cols=43  Identities=14%  Similarity=0.243  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          113 MENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY  159 (185)
Q Consensus       113 ~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~  159 (185)
                      .||..|+.+|..+.+.+..|..||..|+.=..    .+..|..+|..
T Consensus       115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae----~~q~la~vi~~  157 (209)
T 2wvr_A          115 KENEKLHKEIEQKDNEIARLKKENKELAEVAE----HVQYMAELIER  157 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            58899999999988888888889977765444    44444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.87  E-value=16  Score=32.13  Aligned_cols=40  Identities=15%  Similarity=0.104  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          121 RLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus       121 ~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      ......++...+..||++|+.++.++...+....+.|.-.
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (487)
T 3oja_A          436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL  475 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence            3334444555555666666666666666666666555543

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=83.83  E-value=4.6  Score=35.99  Aligned_cols=50  Identities=14%  Similarity=0.177  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR  147 (185)
Q Consensus        98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr  147 (185)
                      +.+++.|+.++..|+.+...+..++..+.+++...+.+-..|-.++.+|+
T Consensus         9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk   58 (403)
T 4etp_A            9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR   58 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34445555555555555555555555555444444444444444433333

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=83.78  E-value=10  Score=27.35  Aligned_cols=43  Identities=16%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          112 RMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       112 ~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      -.||..|...+..+...+..+..||..|+    +|......|..+|.
T Consensus        37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~   79 (83)
T 1wlq_A           37 LKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIE   79 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            35788888888888888888888887775    34444555555443

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=83.57  E-value=6.1  Score=25.30  Aligned_cols=18  Identities=11%  Similarity=0.386  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 029952          127 HHCQRVRTDNDRLRSEHT  144 (185)
Q Consensus       127 ~~~~~L~~EN~~Lrae~~  144 (185)
                      .....|+.||.-|+....
T Consensus        10 nevaslenenetlkkknl   27 (49)
T 3he5_A           10 NEVASLENENETLKKKNL   27 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccHHHHHhcc
Confidence            334445555555554443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=83.53  E-value=7.7  Score=29.76  Aligned_cols=27  Identities=7%  Similarity=0.154  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          129 CQRVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus       129 ~~~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      +..|..|...|..++......++.|+.
T Consensus        73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~   99 (121)
T 3mq7_A           73 VEELEGEITTLNHKLQDASAEVERLRR   99 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444444444444444443333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=83.36  E-value=20  Score=35.93  Aligned_cols=26  Identities=19%  Similarity=0.417  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           96 RKQKHLENLRNQLNRLRMENRELSNR  121 (185)
Q Consensus        96 RKk~~l~eLe~qV~~L~~eN~~L~~~  121 (185)
                      ..++.+++|+.++..+..|...|..+
T Consensus       988 ~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A          988 SLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444333

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=83.23  E-value=12  Score=27.90  Aligned_cols=13  Identities=31%  Similarity=0.675  Sum_probs=8.1

Q ss_pred             hhHHHHHHHHHHh
Q 029952           74 VIDERKRRRMISN   86 (185)
Q Consensus        74 ~~deRk~RR~lsN   86 (185)
                      ..+||-++-|++|
T Consensus         6 EvEEKyrKAMVsn   18 (103)
T 4h22_A            6 EVEEKYKKAMVSN   18 (103)
T ss_dssp             --CCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3456667778887

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=83.08  E-value=2.8  Score=27.55  Aligned_cols=25  Identities=4%  Similarity=0.159  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          131 RVRTDNDRLRSEHTILRRRLSEIRQ  155 (185)
Q Consensus       131 ~L~~EN~~Lrae~~~Lr~rL~~l~~  155 (185)
                      .|..||..|+.++..|..++..+..
T Consensus        23 aLk~E~~eLk~k~~~L~~~~~el~~   47 (53)
T 2yy0_A           23 LLRLELAEMKEKYEAIVEENKKLKA   47 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444433

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=83.01  E-value=11  Score=27.34  Aligned_cols=31  Identities=10%  Similarity=0.129  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          129 CQRVRTDNDRLRSEHTILRRRLSEIRQILLY  159 (185)
Q Consensus       129 ~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~  159 (185)
                      .+.|+.||..|..++..|+..+..+..-+..
T Consensus        50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~   80 (90)
T 2wt7_B           50 KHHLENEKTQLIQQVEQLKQEVSRLARERDA   80 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666666666655555544433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=82.80  E-value=11  Score=37.68  Aligned_cols=32  Identities=16%  Similarity=0.121  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          127 HHCQRVRTDNDRLRSEHTILRRRLSEIRQILL  158 (185)
Q Consensus       127 ~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~  158 (185)
                      ..+..++.+-..|..+...|..++..+..-+.
T Consensus       906 ~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele  937 (1184)
T 1i84_S          906 ELYAEAEEMRVRLAAKKQELEEILHEMEARIE  937 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444555555555555555555443

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=82.48  E-value=2.1  Score=26.14  Aligned_cols=28  Identities=14%  Similarity=0.184  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALH  127 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~  127 (185)
                      ++..|+.+|+.|-.++..|..++..|++
T Consensus         2 RMnQledKvEel~~~~~~l~nEv~Rl~~   29 (34)
T 2r2v_A            2 KLKQVADKLEEVASKLYHNANELARVAK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3567778888877777777776665543

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=82.38  E-value=1.9  Score=30.06  Aligned_cols=18  Identities=22%  Similarity=0.553  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 029952          133 RTDNDRLRSEHTILRRRL  150 (185)
Q Consensus       133 ~~EN~~Lrae~~~Lr~rL  150 (185)
                      ..|...|+.++..|+.+|
T Consensus        60 ~~e~~~L~~~~~~L~~~l   77 (83)
T 1nkp_B           60 QQDIDDLKRQNALLEQQV   77 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333334444444444444

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=82.33  E-value=4.5  Score=36.32  Aligned_cols=48  Identities=17%  Similarity=0.175  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR  147 (185)
Q Consensus       100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr  147 (185)
                      .+.+|+.++.+|+.++..+..++..+.+++...+.+...|-.++.+|+
T Consensus        11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~   58 (412)
T 3u06_A           11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR   58 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            444555555555555555555555555555444444444444444444

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=81.86  E-value=12  Score=26.69  Aligned_cols=36  Identities=14%  Similarity=0.118  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus       118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      |..++..+...+..|...+..+.-++..|..+-.++
T Consensus        25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~   60 (83)
T 2xdj_A           25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI   60 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=81.84  E-value=1.6  Score=28.79  Aligned_cols=29  Identities=14%  Similarity=0.119  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          121 RLRFALHHCQRVRTDNDRLRSEHTILRRR  149 (185)
Q Consensus       121 ~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r  149 (185)
                      .+..|..++..|..||..|+.++..|+..
T Consensus        23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~   51 (55)
T 1dh3_A           23 YVKSLENRVAVLENQNKTLIEELKALKDL   51 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666777788888888888777654

>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=81.64  E-value=1.5  Score=25.26  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 029952          133 RTDNDRLRSEHTILRRRLSEI  153 (185)
Q Consensus       133 ~~EN~~Lrae~~~Lr~rL~~l  153 (185)
                      ...|.+|+.|++.|.-.+..|
T Consensus         6 kqknarlkqeiaaleyeiaal   26 (28)
T 3ra3_B            6 KQKNARLKQEIAALEYEIAAL   26 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHh
Confidence            334555555555555544444

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=81.60  E-value=0.93  Score=32.34  Aligned_cols=25  Identities=16%  Similarity=0.313  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          117 ELSNRLRFALHHCQRVRTDNDRLRS  141 (185)
Q Consensus       117 ~L~~~l~~L~~~~~~L~~EN~~Lra  141 (185)
                      .|+.+|..|.++...|+.||..||.
T Consensus        19 vLKe~I~EL~e~~~qLE~EN~~Lk~   43 (78)
T 1dip_A           19 ILKEQIRELVEKNSQLERENTLLKT   43 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555566666666654

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=81.39  E-value=13  Score=26.83  Aligned_cols=59  Identities=5%  Similarity=0.058  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus        96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      .-....+.++.++..++..+..+..++..|..++..++.+=..+...+.....+|..-.
T Consensus        20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e   78 (101)
T 3u59_A           20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE   78 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777777777777777777777777777666666555555555555554443

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=81.16  E-value=2.9  Score=25.47  Aligned_cols=28  Identities=14%  Similarity=0.018  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          123 RFALHHCQRVRTDNDRLRSEHTILRRRL  150 (185)
Q Consensus       123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~rL  150 (185)
                      ..|..++..|..+|..|..|...|+.-|
T Consensus         4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll   31 (34)
T 2oxj_A            4 XQLEXKVXELLXKNXHLEXEVXRLKXLV   31 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4455666677777777777777666543

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=80.75  E-value=5.4  Score=28.06  Aligned_cols=31  Identities=6%  Similarity=-0.129  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          130 QRVRTDNDRLRSEHTILRRRLSEIRQILLYR  160 (185)
Q Consensus       130 ~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~  160 (185)
                      ..|-..=.....++..|+.+|..|.+-+.-+
T Consensus        31 eeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~   61 (78)
T 3efg_A           31 TELSEALADARLTGARNAELIRHLLEDLGKV   61 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333334455555666665555555443

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=80.66  E-value=9.2  Score=24.71  Aligned_cols=39  Identities=13%  Similarity=0.184  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952          116 RELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR  154 (185)
Q Consensus       116 ~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~  154 (185)
                      .-|+.++..|+....+|+.+-+.|..-++.|+..+..|+
T Consensus         6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarle   44 (52)
T 3he5_B            6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE   44 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444455554444443

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=80.10  E-value=17  Score=27.49  Aligned_cols=48  Identities=25%  Similarity=0.329  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952           94 RMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR  148 (185)
Q Consensus        94 R~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~  148 (185)
                      ...-+.++.+|+.+|+.|+.+...-+..       ......||..|+.++..|+.
T Consensus        35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~l~~   82 (120)
T 3i00_A           35 KTESQRVVLQLKGHVSELEADLAEQQHL-------RQQAADDCEFLRAELDELRR   82 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            4455667777777777777666555433       44556677788877777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	92.52
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	80.21

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.52  E-value=0.028  Score=38.33  Aligned_cols=26  Identities=35%  Similarity=0.454  Sum_probs=22.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 029952           78 RKRRRMISNRESARRSRMRKQKHLEN  103 (185)
Q Consensus        78 Rk~RR~lsNRESARRSR~RKk~~l~e  103 (185)
                      |..||.=+||.+|+.+|+||-...++
T Consensus        48 rDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          48 RKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            45688899999999999999876654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.21  E-value=2  Score=28.43  Aligned_cols=9  Identities=22%  Similarity=0.471  Sum_probs=4.2

Q ss_pred             HHHHHHHHH
Q 029952           98 QKHLENLRN  106 (185)
Q Consensus        98 k~~l~eLe~  106 (185)
                      ...+++|..
T Consensus        22 n~~f~~Lr~   30 (88)
T d1nkpa_          22 KRSFFALRD   30 (88)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            344455543