Citrus Sinensis ID: 029966

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
METSVPYENDLNLKATELRLGLPGSDENEQQTRNNKRSLPDTPDDLDTKDKSDEAASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEARGLTAN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccEEEEEEEcccEEEEEcccccccHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccEEEcccccHHHHHHHccccEEEccHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHcccccccccEEEEEEccccccHHHEcHHHHccHHHHHHHHHHHHccEcccccccccccccccEEEEEcccccEEEEccccHHHHHHHHHHHEEEccccccccccc
Coil and Loop (DISEMBL)
metsvpyendlnlkatelrlglpgsdeneqqtrnnkrslpdtpddldtkdksdEAASVAKAqvvgwppirsyrknSLQQKKNEGECAGIYVKVsmdgapylrKIDLKLYNGYPELLKALENMFKFTVGVyseregykgseyeptyedkdgdwmlvgdvpwEMFMSSCKRLRIMkgseargltan
Flexible Loop (DISEMBL)
metsvpyendlnlkatelrlglpgsdeneqqtrnnkrslpdtpddlDTKDKSDEAASvakaqvvgwppirsyrknslqqkknegECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYseregykgseyeptyedkdgdWMLVGDVPWEMFMSSCKRLRimkgseargltan
Low Complexity Region (SEG)
METSVPYENDLNLKATELRLGLPGSDENEQQTRNNKRslpdtpddldtkdksdEAASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEARGLTAN
Disordered region (IsUnstruct)
**************************************************************VVGWPPI**************GECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRI************
Disordered Region (DISOPRED)
**********LNLKATEL**************************************************************************VSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSE**G****
Disordered Region (DISEMBL)
METSVPYENDLNLKATELRLGLPG**************LPDTPDDLDTKDKSDEAASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGS********
Disordered Region (DISPRO)
***SVPYENDLNLKATELRLGLPG**********************************AKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKG*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METSVPYENDLNLKATELRLGLPGSDENEQQTRNNKRSLPDTPDDLDTKDKSDEAASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEARGLTAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
P32294	196	Auxin-induced protein 22B	N/A	no	0.961	0.903	0.663	5e-68
O24542	193	Auxin-induced protein 22D	N/A	no	0.983	0.937	0.710	5e-68
P33077	186	Auxin-responsive protein	yes	no	0.978	0.967	0.681	3e-66
P49679	189	Auxin-induced protein IAA	N/A	no	0.907	0.883	0.640	1e-62
O24543	203	Auxin-induced protein 22E	N/A	no	0.951	0.862	0.634	2e-62
Q38822	189	Auxin-responsive protein	no	no	0.929	0.904	0.662	6e-62
P49678	174	Auxin-responsive protein	no	no	0.869	0.919	0.606	3e-52
P49677	168	Auxin-responsive protein	no	no	0.836	0.916	0.647	5e-51
P0C133	197	Auxin-responsive protein	yes	no	0.913	0.852	0.525	3e-44
P93830	229	Auxin-responsive protein	no	no	0.934	0.751	0.495	7e-44

>sp|P32294|AX22B_VIGRR Auxin-induced protein 22B OS=Vigna radiata var. radiata GN=AUX22B PE=2 SV=1

 Score =  256 bits (655), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 130/196 (66%), Positives = 150/196 (76%), Gaps = 19/196 (9%)

Query: 1   METSVPYENDLNLKATELRLGLPGSDENEQQT-------RNNKRSLPDTPDDLDTKDKSD 53
           ME+ V +E+DLNLKATELRLGLPG++E E          RNNKR + +T  D  +  K+ 
Sbjct: 1   MESRVVFESDLNLKATELRLGLPGTEEKEDNNLRTHAVLRNNKRQVRETSQDSVSISKAS 60

Query: 54  E--------AASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKID 105
                    +A   KA++VGWPPIRSYRKNS+Q    EGE  GI+VKVSMDGAPYLRK+D
Sbjct: 61  HHQQHVETVSAPPPKAKIVGWPPIRSYRKNSVQ----EGEGDGIFVKVSMDGAPYLRKVD 116

Query: 106 LKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMS 165
           LK+Y GYPELLKALE MFK  +G YSEREGYKGSEY PTYEDKDGDWMLVGDVPW+MF++
Sbjct: 117 LKVYGGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVT 176

Query: 166 SCKRLRIMKGSEARGL 181
           SCKRLRIMKGSEARGL
Sbjct: 177 SCKRLRIMKGSEARGL 192

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Vigna radiata var. radiata (taxid: 3916)

>sp|O24542|AX22D_VIGRR Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1

 Score =  256 bits (654), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 135/190 (71%), Positives = 149/190 (78%), Gaps = 9/190 (4%)

Query: 1   METSV-PYENDLNLKATELRLGLPGSDENEQQT--RNNKRSLPDTPDDLDTKD-----KS 52
           ME S+  YE +LNLKATELRLGLPGSDE E++   R+NKRS P+  D+    +     K 
Sbjct: 1   MENSLGSYEKELNLKATELRLGLPGSDEPEKRATARSNKRSSPEASDEESISNGSDVTKE 60

Query: 53  DEAASVAKAQVVGWPPIRSYRKNSLQQKKNE-GECAGIYVKVSMDGAPYLRKIDLKLYNG 111
           D     AKAQVVGWPPIRSYRKN++QQKK E  E  G+YVKVSM GAPYLRKIDLK+Y  
Sbjct: 61  DNVVPPAKAQVVGWPPIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKS 120

Query: 112 YPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLR 171
           YPELLKALENMFK   G YSEREGY GSEY PTYEDKDGDWMLVGDVPW MF+SSCKRLR
Sbjct: 121 YPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLR 180

Query: 172 IMKGSEARGL 181
           IMKGSEA+GL
Sbjct: 181 IMKGSEAKGL 190

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Vigna radiata var. radiata (taxid: 3916)

>sp|P33077|IAA4_ARATH Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2

 Score =  251 bits (640), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/182 (68%), Positives = 149/182 (81%), Gaps = 2/182 (1%)

Query: 1   METSVPYENDLNLKATELRLGLPGSDENEQQTRNNKRSLPD-TPDDLDTKDKSDEAASVA 59
           ME    Y+  +NLKATELRLGLPG++E     ++NKR LP+ T  ++++  K+ E AS  
Sbjct: 1   MEKVDVYDELVNLKATELRLGLPGTEETVSCGKSNKRVLPEATEKEIESTGKT-ETASPP 59

Query: 60  KAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKAL 119
           KAQ+VGWPP+RSYRKN++Q KK+E E  G YVKVSMDGAPYLRKIDL +Y  YPEL+K+L
Sbjct: 60  KAQIVGWPPVRSYRKNNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSL 119

Query: 120 ENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEAR 179
           ENMFKF+VG Y EREGYKGS++ PTYEDKDGDWMLVGDVPWEMF+SSCKRLRIMKGSE +
Sbjct: 120 ENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVK 179

Query: 180 GL 181
           GL
Sbjct: 180 GL 181

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P49679|IAA4_PEA Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1

 Score =  238 bits (607), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/189 (64%), Positives = 140/189 (74%), Gaps = 22/189 (11%)

Query: 11  LNLKATELRLGLPGSDENEQQT---------RNNKRSLPDTPDDLDTKDK---------S 52
           +  KATELRLGLPG  E E++           NNKR LP T ++  +  K         S
Sbjct: 1   MEFKATELRLGLPGITEEEEKKIIHGSSVVKNNNKRQLPQTSEESVSISKVTNDEHIVES 60

Query: 53  DEAASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGY 112
             AA  AKA++VGWPPIRSYRKNSL    +E +  GI+VKVSMDGAPYLRKIDL++Y GY
Sbjct: 61  SSAAPPAKAKIVGWPPIRSYRKNSL----HEADVGGIFVKVSMDGAPYLRKIDLRVYGGY 116

Query: 113 PELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRI 172
            ELLKALE MFK T+G YSEREGYKGSEY PTYEDKDGDWMLVGDVPW+MF++SCKRLRI
Sbjct: 117 SELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRI 176

Query: 173 MKGSEARGL 181
           MKG+EA+GL
Sbjct: 177 MKGTEAKGL 185

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Pisum sativum (taxid: 3888)

>sp|O24543|AX22E_VIGRR Auxin-induced protein 22E OS=Vigna radiata var. radiata GN=AUX22E PE=2 SV=1

 Score =  238 bits (606), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/197 (63%), Positives = 147/197 (74%), Gaps = 22/197 (11%)

Query: 7   YENDLNLKATELRLGLPGSDENEQQT--------RNNKRSLPDTPDD------------- 45
           YE +LNL+ATELRLGLPGSDE +++          +NKRS P+  +              
Sbjct: 4   YETELNLRATELRLGLPGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDSSDS 63

Query: 46  LDTKDKSDEAASVAKAQVVGWPPIRSYRKNSLQQKKNE-GECAGIYVKVSMDGAPYLRKI 104
             T D ++++   AK QVVGWPPIRS+RKNSLQQKK E G+  G+Y+KVSM GAPYLRKI
Sbjct: 64  TTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYLKVSMAGAPYLRKI 123

Query: 105 DLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFM 164
           DLK+Y  YPELLKAL+N+FK T G YSEREGY GSEY PTYEDKDGDWMLVGDVPW MF+
Sbjct: 124 DLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFV 183

Query: 165 SSCKRLRIMKGSEARGL 181
           SSCKRLRI+KGSEA+GL
Sbjct: 184 SSCKRLRIIKGSEAKGL 200

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Vigna radiata var. radiata (taxid: 3916)

>sp|Q38822|IAA3_ARATH Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1

 Score =  236 bits (602), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 120/181 (66%), Positives = 141/181 (77%), Gaps = 10/181 (5%)

Query: 11  LNLKATELRLGLPGSDE-NEQQTR------NNKRSLP-DTPDDLDTKDKSDEAASVAKAQ 62
           +NLK TELRLGLPG+D   E + R      NNKR L  DT  ++++  +  E +   KAQ
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQ 64

Query: 63  VVGWPPIRSYRKNSLQQKKNEGEC--AGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALE 120
           +VGWPP+RSYRKN++Q KKNE E    GIYVKVSMDGAPYLRKIDL  Y GY ELLKALE
Sbjct: 65  IVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKALE 124

Query: 121 NMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEARG 180
            MFKF+VG Y ER+GYKGS++ PTYEDKDGDWML+GDVPWEMF+ +CKRLRIMKGSEA+G
Sbjct: 125 VMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKG 184

Query: 181 L 181
           L
Sbjct: 185 L 185

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P49678|IAA2_ARATH Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=1 SV=3

 Score =  204 bits (518), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/183 (60%), Positives = 126/183 (68%), Gaps = 23/183 (12%)

Query: 9   NDLNLKATELRLGLPGSDEN---EQQTR----NNKRSLPDTPDDLDTKDKSDEAASVAKA 61
           N+LNLK TEL LGLPG  E    EQ+      NNKR   +T D+       +E+    K 
Sbjct: 7   NELNLKDTELCLGLPGRTEKIKEEQEVSCVKSNNKRLFEETRDE-------EESTPPTKT 59

Query: 62  QVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALEN 121
           Q+VGWPP+RS RKN+             YVKVSMDGAPYLRKIDLK Y  YPELLKALEN
Sbjct: 60  QIVGWPPVRSSRKNNNSVS---------YVKVSMDGAPYLRKIDLKTYKNYPELLKALEN 110

Query: 122 MFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEARGL 181
           MFK  +G Y EREGYKGS + PTYEDKDGDWMLVGDVPW+MF SSCKRLRIMKGS+A  L
Sbjct: 111 MFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAPAL 170

Query: 182 TAN 184
            ++
Sbjct: 171 DSS 173

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P49677|IAA1_ARATH Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2

 Score =  200 bits (508), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 114/176 (64%), Positives = 129/176 (73%), Gaps = 22/176 (12%)

Query: 9   NDLNLKATELRLGLPGSDENEQ-----QTRNNKRSLPDTPDDLDTKDKSDEAASV-AKAQ 62
           N LNLK TELRLGLPG+ E +Q        NNKR            D ++E+A   AK Q
Sbjct: 5   NGLNLKDTELRLGLPGAQEEQQLELSCVRSNNKRK---------NNDSTEESAPPPAKTQ 55

Query: 63  VVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENM 122
           +VGWPP+RS RKN+  +  +       YVKVSMDGAPYLRKIDLK+Y  YPELLKALENM
Sbjct: 56  IVGWPPVRSNRKNNNNKNVS-------YVKVSMDGAPYLRKIDLKMYKNYPELLKALENM 108

Query: 123 FKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEA 178
           FKFTVG YSEREGYKGS + PTYEDKDGDWMLVGDVPW+MF SSC++LRIMKGSEA
Sbjct: 109 FKFTVGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSEA 164

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C133|IAA31_ORYSJ Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1

 Score =  177 bits (449), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/198 (52%), Positives = 124/198 (62%), Gaps = 30/198 (15%)

Query: 12  NLKATELRLGLPGSDEN-----EQQTRNNKRSLPDTPDDLDTKDKSDEAASVAKAQVVGW 66
           NLKATELRLGLPG++E            +KR+L   PD         + A+ AKAQVVGW
Sbjct: 3   NLKATELRLGLPGTEEEAAPPPSTPRAGSKRALAGEPDQ-----AKIKPAAAAKAQVVGW 57

Query: 67  PPIRSYRKNSLQ--------------------QKKNEGECAGIYVKVSMDGAPYLRKIDL 106
           PP+RSYRK+ LQ                    QK++     G++VKVSMDGAPYLRKIDL
Sbjct: 58  PPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAPYLRKIDL 117

Query: 107 KLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSS 166
           K+Y GY EL +ALE MF    G  +       S++  TYEDKDGD MLVGDVP+EMF+S+
Sbjct: 118 KVYKGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGDVPFEMFIST 177

Query: 167 CKRLRIMKGSEARGLTAN 184
           CKRLRIMKGSEARGL A 
Sbjct: 178 CKRLRIMKGSEARGLGAT 195

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P93830|IAA17_ARATH Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2

 Score =  176 bits (447), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 106/214 (49%), Positives = 125/214 (58%), Gaps = 42/214 (19%)

Query: 10  DLNLKATELRLGLPGSDENEQQTRNNKRSLPDTPD---------------------DLDT 48
           +LNL+ TEL LGLPG D     T  NKR   +T D                       D+
Sbjct: 6   ELNLRETELCLGLPGGDTVAPVT-GNKRGFSETVDLKLNLNNEPANKEGSTTHDVVTFDS 64

Query: 49  KDKS----DEAASVAKAQVVGWPPIRSYRKNSLQ--QKKNEGECAGIYVKVSMDGAPYLR 102
           K+KS    D A   AKAQVVGWPP+RSYRKN +   QK + G  A  +VKVSMDGAPYLR
Sbjct: 65  KEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDGAPYLR 124

Query: 103 KIDLKLYNGYPELLKALENMFK-FTVGVYSEREG-------------YKGSEYEPTYEDK 148
           KIDL++Y  Y EL  AL NMF  FT+G +   EG                 +Y P+YEDK
Sbjct: 125 KIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDK 184

Query: 149 DGDWMLVGDVPWEMFMSSCKRLRIMKGSEARGLT 182
           DGDWMLVGDVPW MF+ +CKRLR+MKGS+A GL 
Sbjct: 185 DGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLA 218

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
225432890	192	PREDICTED: auxin-induced protein 22D [Vi	0.983	0.942	0.75	2e-75
255551959	191	Auxin-responsive protein IAA4, putative	0.983	0.947	0.748	6e-74
34550779	190	Gbiaa-Re [Gossypium barbadense]	0.978	0.947	0.727	2e-71
357443077	178	Auxin-induced protein [Medicago truncatu	0.956	0.988	0.721	5e-70
429326550	196	hypothetical protein [Populus tomentosa]	0.983	0.923	0.713	6e-70
224107927	192	predicted protein [Populus trichocarpa]	0.978	0.937	0.713	7e-68
302398569	191	ARF domain class transcription factor [M	0.951	0.916	0.747	2e-67
224102149	207	predicted protein [Populus trichocarpa]	0.983	0.874	0.674	2e-67
255559921	196	Auxin-induced protein 22E, putative [Ric	0.961	0.903	0.668	1e-66
225437213	186	PREDICTED: auxin-induced protein 22D [Vi	0.961	0.951	0.688	1e-66

>gi|225432890|ref|XP_002284121.1| PREDICTED: auxin-induced protein 22D [Vitis vinifera] gi|297737155|emb|CBI26356.3| unnamed protein product [Vitis vinifera]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 141/188 (75%), Positives = 158/188 (84%), Gaps = 7/188 (3%)

Query: 1   METSVPYENDLNLKATELRLGLPGSDENEQQ----TRNNKRSLPDTPDDLDTKDKSD--- 53
           ME +V YE+DLNLKATELRLGLPG DE E++     RNNKR+ PDT D+  +K  S+   
Sbjct: 1   MEGAVAYESDLNLKATELRLGLPGRDEAEKEALSGVRNNKRASPDTSDECGSKGSSNGDR 60

Query: 54  EAASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYP 113
           E A   KAQVVGWPPIRS+RKNS Q KK E E AG++VKVSMDGAPYLRKIDLK+Y GYP
Sbjct: 61  ENAPATKAQVVGWPPIRSFRKNSFQPKKTEAEAAGMFVKVSMDGAPYLRKIDLKVYKGYP 120

Query: 114 ELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIM 173
           ELL+AL+NMFKFT+G YSEREGYKGSEY PTYEDKDGDWMLVGDVPW+MFMSSCKRLRIM
Sbjct: 121 ELLQALQNMFKFTIGDYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWDMFMSSCKRLRIM 180

Query: 174 KGSEARGL 181
           KGS+ARGL
Sbjct: 181 KGSDARGL 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551959|ref|XP_002517024.1| Auxin-responsive protein IAA4, putative [Ricinus communis] gi|223543659|gb|EEF45187.1| Auxin-responsive protein IAA4, putative [Ricinus communis]

 Score =  281 bits (720), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 140/187 (74%), Positives = 156/187 (83%), Gaps = 6/187 (3%)

Query: 1   METSVPYENDLNLKATELRLGLPGSDENEQQ-----TRNNKRSLPDTPDDLDTKDKS-DE 54
           ME +V YENDLNLKATELRLGLPG++ NE+Q     TRNNKR LP+T D+   K     E
Sbjct: 1   MEGAVAYENDLNLKATELRLGLPGTERNEEQAALSCTRNNKRPLPETRDECGEKASDYTE 60

Query: 55  AASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPE 114
            A   KAQ+VGWPP+RSYRKN+LQ K+ E E +G YVKVSMDGAPYLRKIDLK+Y GY E
Sbjct: 61  TAPPPKAQIVGWPPVRSYRKNNLQTKQTEAESSGRYVKVSMDGAPYLRKIDLKVYKGYKE 120

Query: 115 LLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMK 174
           LLKAL++MFKFT+G YSEREGYKGSEY PTYEDKDGDWMLVGDVPW+MFMSSCKRLRIMK
Sbjct: 121 LLKALQSMFKFTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMSSCKRLRIMK 180

Query: 175 GSEARGL 181
           GSEARGL
Sbjct: 181 GSEARGL 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34550779|gb|AAQ74955.1| Gbiaa-Re [Gossypium barbadense]

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 136/187 (72%), Positives = 155/187 (82%), Gaps = 7/187 (3%)

Query: 1   METSVPYENDLNLKATELRLGLPGSDENEQQTRNNKRSLPDTPDD------LDTKDKSDE 54
           ME SV Y+NDLNL+ATELRLGLPG+ E     R+NKRSL    DD        + D+++ 
Sbjct: 1   MEGSVGYDNDLNLRATELRLGLPGT-EPVSIVRSNKRSLQQVADDDCGVNGCRSDDQNET 59

Query: 55  AASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPE 114
           A    KAQ+VGWPPIRSYRKN++Q KKNE E  GIYVKVSMDGAPYLRKIDLK+Y+GYPE
Sbjct: 60  APPPPKAQIVGWPPIRSYRKNNIQTKKNESEGGGIYVKVSMDGAPYLRKIDLKIYSGYPE 119

Query: 115 LLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMK 174
           LL+A+ENMFKFT+G YSEREGYKGS+Y PTYEDKDGDWMLVGDVPWEMF++SCKRLRIMK
Sbjct: 120 LLQAIENMFKFTIGEYSEREGYKGSDYAPTYEDKDGDWMLVGDVPWEMFITSCKRLRIMK 179

Query: 175 GSEARGL 181
           GSEARGL
Sbjct: 180 GSEARGL 186

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443077|ref|XP_003591816.1| Auxin-induced protein [Medicago truncatula] gi|355480864|gb|AES62067.1| Auxin-induced protein [Medicago truncatula] gi|388507764|gb|AFK41948.1| unknown [Medicago truncatula]

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 132/183 (72%), Positives = 156/183 (85%), Gaps = 7/183 (3%)

Query: 1   METSVPYENDLNLKATELRLGLPGSDENEQQTR--NNKRSLPDTPDDLDTKDKSDEAASV 58
           ME  V YENDLN+KATELRLGLPG+++NE+Q    +NKR L +T  D  +K  SD+AA  
Sbjct: 1   MENKVAYENDLNMKATELRLGLPGTEQNEEQKAKISNKRPLTETSKDSGSKT-SDDAAPP 59

Query: 59  AKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKA 118
           +KA++VGWPPIRSYRKNSLQ    E E +GIYVKVS+DGAPYLRKIDL++Y GY +LLKA
Sbjct: 60  SKAKIVGWPPIRSYRKNSLQ----EAEASGIYVKVSLDGAPYLRKIDLRVYGGYAQLLKA 115

Query: 119 LENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEA 178
           LE+MFK T+G YSE+EGYKGSEYEPTYEDKDGDWMLVGDVPWEMF++SCKRLRIMKG+EA
Sbjct: 116 LESMFKLTIGNYSEKEGYKGSEYEPTYEDKDGDWMLVGDVPWEMFVTSCKRLRIMKGTEA 175

Query: 179 RGL 181
           RG+
Sbjct: 176 RGV 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326550|gb|AFZ78615.1| hypothetical protein [Populus tomentosa]

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 137/192 (71%), Positives = 150/192 (78%), Gaps = 11/192 (5%)

Query: 1   METSVPYENDLNLKATELRLGLPGSDENEQQ----TRNNKRSLPDTPDDLDTKDKSD--- 53
           ME  V YENDLNLKATELRLGLPG+    ++     R NKR  P+T ++     KSD   
Sbjct: 1   MEVGVAYENDLNLKATELRLGLPGTGCTNEKGVSGARTNKRPFPETREEGGANGKSDAQH 60

Query: 54  ---EAASVAKAQVVGWPPIRSYRKNSLQQKKNEGECA-GIYVKVSMDGAPYLRKIDLKLY 109
              E AS  K Q+VGWPPIRSYRKNS Q KK E E A G+YVKVSMDGAPYLRKIDLK+Y
Sbjct: 61  DDQETASAPKVQIVGWPPIRSYRKNSFQPKKAEDEAAAGMYVKVSMDGAPYLRKIDLKVY 120

Query: 110 NGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKR 169
            GYPELLKALENMFK T+G YSEREGYKGSEY PTYEDKDGDWMLVGDVPW+MF+SSCK+
Sbjct: 121 KGYPELLKALENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFLSSCKK 180

Query: 170 LRIMKGSEARGL 181
           LRIMKGSEA GL
Sbjct: 181 LRIMKGSEAIGL 192

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107927|ref|XP_002314656.1| predicted protein [Populus trichocarpa] gi|222863696|gb|EEF00827.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 137/192 (71%), Positives = 153/192 (79%), Gaps = 12/192 (6%)

Query: 1   METSVPYENDLNLKATELRLGLPGSD-ENEQQT----RNNKRSLPDTPDDLDTKDKSD-- 53
           ME  V YENDLNLKATELRLGLPG+   NE+Q     RNNKR LP+T ++   K KSD  
Sbjct: 1   MEGGVAYENDLNLKATELRLGLPGTSCTNEEQAVSGARNNKRPLPETREERGAKGKSDPR 60

Query: 54  ----EAASVAKAQVVGWPPIRSYRKNSLQ-QKKNEGECAGIYVKVSMDGAPYLRKIDLKL 108
               E A   KAQ+VGWPPIRSYRKN+LQ +K      AG+YVKVSMDGAPYLRKIDLK+
Sbjct: 61  HDDQETAPAPKAQIVGWPPIRSYRKNTLQPKKAEAEAAAGMYVKVSMDGAPYLRKIDLKV 120

Query: 109 YNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCK 168
           Y GYPELLKALENMFK T+G YSEREGYKGSEY PTYEDKDGDWML+GDVPW+MF+SSCK
Sbjct: 121 YKGYPELLKALENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLIGDVPWDMFLSSCK 180

Query: 169 RLRIMKGSEARG 180
           +LRI+KGSEA G
Sbjct: 181 KLRIIKGSEATG 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398569|gb|ADL36579.1| ARF domain class transcription factor [Malus x domestica]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 148/182 (81%), Gaps = 7/182 (3%)

Query: 7   YENDLNLKATELRLGLPGSDE-NEQQTRNNKRSLP----DTPDDLDTKDKSDEAASVAKA 61
           +ENDLNLKATEL LGLPG DE +E   +  KRSLP    +   + D K+   E A  AKA
Sbjct: 6   HENDLNLKATELTLGLPGRDETSELPNQTKKRSLPADLKNEEGNPDAKNAQKETAPSAKA 65

Query: 62  QVVGWPPIRSYRKNSLQQKKN-EGE-CAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKAL 119
           Q+VGWPPIRSYRKNSLQ  KN E E  AGIYVKVSMDGAPYLRKIDL++Y  YPELLKAL
Sbjct: 66  QIVGWPPIRSYRKNSLQVNKNTEPETAAGIYVKVSMDGAPYLRKIDLRVYKCYPELLKAL 125

Query: 120 ENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEAR 179
           E MFKFT+G YSEREGYKGSEY PTYEDKDGDWMLVGDVPW+MFMSSCK+LRIMKGSEAR
Sbjct: 126 EVMFKFTIGQYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMSSCKKLRIMKGSEAR 185

Query: 180 GL 181
           GL
Sbjct: 186 GL 187

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102149|ref|XP_002312567.1| predicted protein [Populus trichocarpa] gi|222852387|gb|EEE89934.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 137/203 (67%), Positives = 151/203 (74%), Gaps = 22/203 (10%)

Query: 1   METSVPYENDLNLKATELRLGLPGSDENEQQ----TRNNKRSLPDTPDDLDTKDKSD--- 53
           ME  V YENDLNLK TELRLGLPG+    ++     RNNKR  P+T ++     KSD   
Sbjct: 1   MEGGVAYENDLNLKETELRLGLPGTGCTNEKGVSGARNNKRPFPETREEGGANGKSDAQH 60

Query: 54  ---EAASV-----------AKAQVVGWPPIRSYRKNSLQQKKNEGECA-GIYVKVSMDGA 98
              E AS             + Q+VGWPPIRSYRKNSLQ KK E E A G+YVKVSMDGA
Sbjct: 61  DDQETASAPNTYSFDMHATCRVQIVGWPPIRSYRKNSLQPKKAEDEAAAGMYVKVSMDGA 120

Query: 99  PYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV 158
           PYLRKIDLK+Y GYPELLKALENMFK T+G YSEREGYKGSEY PTYEDKDGDWMLVGDV
Sbjct: 121 PYLRKIDLKVYKGYPELLKALENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDV 180

Query: 159 PWEMFMSSCKRLRIMKGSEARGL 181
           PW+MF+SSCK+LRIMKGSEA GL
Sbjct: 181 PWDMFLSSCKKLRIMKGSEAIGL 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559921|ref|XP_002520979.1| Auxin-induced protein 22E, putative [Ricinus communis] gi|223539816|gb|EEF41396.1| Auxin-induced protein 22E, putative [Ricinus communis]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 149/193 (77%), Gaps = 16/193 (8%)

Query: 7   YENDLNLKATELRLGLPGSDENEQQ------TRNNKRSLPDTPDDLDTK----------D 50
           Y  DLNLKATELRLGLPGSDE +Q+      TR  KR+ P+  ++  T+          +
Sbjct: 3   YHGDLNLKATELRLGLPGSDEPDQKQPTSSVTRGIKRASPELSEESRTRSNITSGSIVEN 62

Query: 51  KSDEAASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYN 110
             +  AS AKAQVVGWPPIRSYRKN  Q K++EGE AG+YVKVS+DGAPYLRKID+K+YN
Sbjct: 63  DEEHCASPAKAQVVGWPPIRSYRKNYFQTKQSEGEGAGMYVKVSVDGAPYLRKIDIKVYN 122

Query: 111 GYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRL 170
            YPELLKALENMFK  +G YSEREGY GS+Y PTYEDKDGDWMLVGDVPW MF+SSCKRL
Sbjct: 123 SYPELLKALENMFKLKIGEYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRL 182

Query: 171 RIMKGSEARGLTA 183
           RI+KGSE RGL+ 
Sbjct: 183 RIVKGSEGRGLSC 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437213|ref|XP_002281696.1| PREDICTED: auxin-induced protein 22D [Vitis vinifera] gi|297735491|emb|CBI17931.3| unnamed protein product [Vitis vinifera]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 128/186 (68%), Positives = 148/186 (79%), Gaps = 9/186 (4%)

Query: 1   METSVPYENDLNLKATELRLGLPGSDENEQQT----RNNKRSLPDTPDDLDTKDKS---- 52
           ME  V Y+N LNL+ATELRLGLPG++E E+Q+    R+ KR+ P+  ++  +K  S    
Sbjct: 1   MEKPVVYDNGLNLEATELRLGLPGTNEPEKQSSTSVRSKKRASPEMAEETRSKSSSCISD 60

Query: 53  -DEAASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNG 111
            D+ A   KAQVVGWPP+RSYRKNS QQ+K E E AG+YVKVSMDGAPYLRKIDLK+Y  
Sbjct: 61  ADDDAPPPKAQVVGWPPVRSYRKNSFQQRKGEAEGAGMYVKVSMDGAPYLRKIDLKVYKS 120

Query: 112 YPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLR 171
           YPELL ALENMFKF +G YSEREGY GS+Y P YEDKDGDWMLVGDVPWEMF+SSCKRLR
Sbjct: 121 YPELLNALENMFKFRIGEYSEREGYNGSDYTPAYEDKDGDWMLVGDVPWEMFISSCKRLR 180

Query: 172 IMKGSE 177
           IMKGSE
Sbjct: 181 IMKGSE 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2170862	186	ATAUX2-11 "AT5G43700" [Arabido	0.983	0.973	0.662	1.3e-61
TAIR|locus:2018379	189	SHY2 "SHORT HYPOCOTYL 2" [Arab	0.929	0.904	0.640	2e-56
UNIPROTKB|P49679	189	IAA4/5 "Auxin-induced protein	0.907	0.883	0.613	3.4e-54
TAIR|locus:2129910	168	IAA1 "indole-3-acetic acid ind	0.869	0.952	0.652	5.6e-52
TAIR|locus:2094578	174	IAA2 "indole-3-acetic acid ind	0.918	0.971	0.588	1.8e-48
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.516	0.402	0.648	1.3e-44
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.684	0.490	0.639	4.1e-43
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.635	0.502	0.648	7.5e-42
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.663	0.463	0.616	7.5e-42
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.668	0.537	0.589	9.5e-42

TAIR|locus:2170862 ATAUX2-11 "AT5G43700" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 120/181 (66%), Positives = 139/181 (76%)

Query:     1 METSVPYENDLNLKATELRLGLPGSDENEQQTRNNKRXXXXXXXXXXXXXXXXEAASVAK 60
             ME    Y+  +NLKATELRLGLPG++E     ++NKR                E AS  K
Sbjct:     1 MEKVDVYDELVNLKATELRLGLPGTEETVSCGKSNKRVLPEATEKEIESTGKTETASPPK 60

Query:    61 AQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALE 120
             AQ+VGWPP+RSYRKN++Q KK+E E  G YVKVSMDGAPYLRKIDL +Y  YPEL+K+LE
Sbjct:    61 AQIVGWPPVRSYRKNNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLE 120

Query:   121 NMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEARG 180
             NMFKF+VG Y EREGYKGS++ PTYEDKDGDWMLVGDVPWEMF+SSCKRLRIMKGSE +G
Sbjct:   121 NMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKG 180

Query:   181 L 181
             L
Sbjct:   181 L 181

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;ISS;RCA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2018379 SHY2 "SHORT HYPOCOTYL 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 116/181 (64%), Positives = 134/181 (74%)

Query:    11 LNLKATELRLGLPGSD---ENEQQT----RNNKRXXXXXXXXXXXXXXX-XEAASVAKAQ 62
             +NLK TELRLGLPG+D   E +++      NNKR                 E +   KAQ
Sbjct:     5 VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQ 64

Query:    63 VVGWPPIRSYRKNSLQQKKNEGECAG--IYVKVSMDGAPYLRKIDLKLYNGYPELLKALE 120
             +VGWPP+RSYRKN++Q KKNE E  G  IYVKVSMDGAPYLRKIDL  Y GY ELLKALE
Sbjct:    65 IVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKALE 124

Query:   121 NMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEARG 180
              MFKF+VG Y ER+GYKGS++ PTYEDKDGDWML+GDVPWEMF+ +CKRLRIMKGSEA+G
Sbjct:   125 VMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKG 184

Query:   181 L 181
             L
Sbjct:   185 L 185

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|P49679 IAA4/5 "Auxin-induced protein IAA4" [Pisum sativum (taxid:3888)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 116/189 (61%), Positives = 132/189 (69%)

Query:    11 LNLKATELRLGLPGSDENEQQT---------RNNKRXXXXXXXXXXXXXX---------X 52
             +  KATELRLGLPG  E E++           NNKR                        
Sbjct:     1 MEFKATELRLGLPGITEEEEKKIIHGSSVVKNNNKRQLPQTSEESVSISKVTNDEHIVES 60

Query:    53 XEAASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGY 112
               AA  AKA++VGWPPIRSYRKNSL    +E +  GI+VKVSMDGAPYLRKIDL++Y GY
Sbjct:    61 SSAAPPAKAKIVGWPPIRSYRKNSL----HEADVGGIFVKVSMDGAPYLRKIDLRVYGGY 116

Query:   113 PELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRI 172
              ELLKALE MFK T+G YSEREGYKGSEY PTYEDKDGDWMLVGDVPW+MF++SCKRLRI
Sbjct:   117 SELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRI 176

Query:   173 MKGSEARGL 181
             MKG+EA+GL
Sbjct:   177 MKGTEAKGL 185

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2129910 IAA1 "indole-3-acetic acid inducible" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 111/170 (65%), Positives = 122/170 (71%)

Query:     9 NDLNLKATELRLGLPGSDENEQQTRNNKRXXXXXXXXXXXXXXXXEAASVAKAQVVGWPP 68
             N LNLK TELRLGLPG+ E +Q   +  R                 A   AK Q+VGWPP
Sbjct:     5 NGLNLKDTELRLGLPGAQEEQQLELSCVRSNNKRKNNDSTEES---APPPAKTQIVGWPP 61

Query:    69 IRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVG 128
             +RS RKN+    KN       YVKVSMDGAPYLRKIDLK+Y  YPELLKALENMFKFTVG
Sbjct:    62 VRSNRKNN--NNKNVS-----YVKVSMDGAPYLRKIDLKMYKNYPELLKALENMFKFTVG 114

Query:   129 VYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEA 178
              YSEREGYKGS + PTYEDKDGDWMLVGDVPW+MF SSC++LRIMKGSEA
Sbjct:   115 EYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSEA 164

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2094578 IAA2 "indole-3-acetic acid inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 106/180 (58%), Positives = 120/180 (66%)

Query:     7 YE--NDLNLKATELRLGLPGSDENEQQTRNNKRXXXXXXXXXXXXXXXXEAASVAKAQVV 64
             YE  N+LNLK TEL LGLPG  E  ++ +                    E+    K Q+V
Sbjct:     3 YEKVNELNLKDTELCLGLPGRTEKIKEEQEVSCVKSNNKRLFEETRDEEESTPPTKTQIV 62

Query:    65 GWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFK 124
             GWPP+RS RKN+     N       YVKVSMDGAPYLRKIDLK Y  YPELLKALENMFK
Sbjct:    63 GWPPVRSSRKNN-----NSVS----YVKVSMDGAPYLRKIDLKTYKNYPELLKALENMFK 113

Query:   125 FTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEARGLTAN 184
               +G Y EREGYKGS + PTYEDKDGDWMLVGDVPW+MF SSCKRLRIMKGS+A  L ++
Sbjct:   114 VMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAPALDSS 173

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
 Identities = 72/111 (64%), Positives = 79/111 (71%)

Query:    86 CAGI-YVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFK-FTVGVYSEREGYK------ 137
             CA + YVKVSMDGAPYLRKIDLKLY  Y +L  AL  MF  FT+G Y   +G K      
Sbjct:   115 CATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGP-QGMKDFMNES 173

Query:   138 -------GSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEARGL 181
                    GS+Y PTYEDKDGDWMLVGDVPWEMF+ SCKR+RIMKGSEA GL
Sbjct:   174 KLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGL 224

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 409 (149.0 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
 Identities = 87/136 (63%), Positives = 96/136 (70%)

Query:    56 ASVAKAQVVGWPPIRSYRKNS-----LQQKKNEGECA-G---IYVKVSMDGAPYLRKIDL 106
             A  AKAQVVGWPPIRSYRKN+     L+  K + E   G   +YVKVSMDGAPYLRK+DL
Sbjct:   110 APAAKAQVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDL 169

Query:   107 KLYNGYPELLKALENMF-KFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMS 165
             K Y  Y +L  ALE MF  FT G     E  K  EY  TYEDKDGDWMLVGDVPWEMF +
Sbjct:   170 KTYKNYKDLSTALEKMFIGFTTGKDGLSESRKDGEYVLTYEDKDGDWMLVGDVPWEMFAN 229

Query:   166 SCKRLRIMKGSEARGL 181
             SC+RLRIMKGS+A GL
Sbjct:   230 SCRRLRIMKGSDAIGL 245

GO:0009733 "response to auxin stimulus" evidence=ISS

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 407 (148.3 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
 Identities = 85/131 (64%), Positives = 94/131 (71%)

Query:    60 KAQVVGWPPIRSYRKNSLQQKKNEGEC-AGIYVKVSMDGAPYLRKIDLKLYNGYPELLKA 118
             KAQVVGWPP+RS+RKN L +K     C A   VKVSMDGAPYLRKID+ +Y  YPEL  A
Sbjct:    98 KAQVVGWPPVRSFRKNVLAEK-----CKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMA 152

Query:   119 LENMF-KFTVGVYSEREGYKGS-------EYEPTYEDKDGDWMLVGDVPWEMFMSSCKRL 170
              +NMF  FT+G     +  K S       EY PTYEDKDGDWMLVGDVPWEMF+ SCKRL
Sbjct:   153 FQNMFTSFTIGKCGSHQQLKESNKLRDDLEYVPTYEDKDGDWMLVGDVPWEMFVESCKRL 212

Query:   171 RIMKGSEARGL 181
             RIMKGSEA GL
Sbjct:   213 RIMKGSEAIGL 223

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 388 (141.6 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
 Identities = 82/133 (61%), Positives = 93/133 (69%)

Query:    59 AKAQVVGWPPIRSYRKNSL---QQKKNEGECAG------IYVKVSMDGAPYLRKIDLKLY 109
             AKAQVVGWPPIRSYRKN++   Q K N+ +         +YVKVSMDGAPYLRK+DLK Y
Sbjct:   120 AKAQVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTY 179

Query:   110 NGYPELLKALENMF-KFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCK 168
               Y ++   LE MF  F+ G     E  K  EY  TYEDKDGDWMLVGDVPWEMF  SC+
Sbjct:   180 KNYKDMSLGLEKMFIGFSTGKEGA-ENQKDGEYVLTYEDKDGDWMLVGDVPWEMFTDSCR 238

Query:   169 RLRIMKGSEARGL 181
             RLRIMKGS+A GL
Sbjct:   239 RLRIMKGSDAIGL 251

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 82/139 (58%), Positives = 96/139 (69%)

Query:    59 AKAQVVGWPPIRSYRKNSLQ--QKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELL 116
             AKAQVVGWPP+RSYRKN +   QK + G  A  +VKVSMDGAPYLRKIDL++Y  Y EL 
Sbjct:    79 AKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELS 138

Query:   117 KALENMFK-FTVGVYSEREGY-------------KGSEYEPTYEDKDGDWMLVGDVPWEM 162
              AL NMF  FT+G +   EG                 +Y P+YEDKDGDWMLVGDVPW M
Sbjct:   139 NALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPM 198

Query:   163 FMSSCKRLRIMKGSEARGL 181
             F+ +CKRLR+MKGS+A GL
Sbjct:   199 FVDTCKRLRLMKGSDAIGL 217

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32294	AX22B_VIGRR	No assigned EC number	0.6632	0.9619	0.9030	N/A	no
P49679	IAA4_PEA	No assigned EC number	0.6402	0.9076	0.8835	N/A	no
P33077	IAA4_ARATH	No assigned EC number	0.6813	0.9782	0.9677	yes	no
P0C133	IAA31_ORYSJ	No assigned EC number	0.5252	0.9130	0.8527	yes	no
O24542	AX22D_VIGRR	No assigned EC number	0.7105	0.9836	0.9378	N/A	no
O24543	AX22E_VIGRR	No assigned EC number	0.6345	0.9510	0.8620	N/A	no
P49680	IAA6_PEA	No assigned EC number	0.5174	0.875	0.8994	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020120001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (192 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	4e-96

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  276 bits (708), Expect = 4e-96
 Identities = 111/189 (58%), Positives = 126/189 (66%), Gaps = 23/189 (12%)

Query: 11  LNLKATELRLGLPGSDENE-----QQTRNNKRSLPDTPDDLDTKDKSDE----------- 54
           LNLKATELRLGLPG  E E         +NKR   +  +D  +    ++           
Sbjct: 1   LNLKATELRLGLPGGSEPESEPSTSSVTSNKRGFSEVTEDGISSSLGEDKSTISVSSNGD 60

Query: 55  -AASVAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYP 113
            A   AKAQVVGWPP+RSYRKNSL++KK+     G YVKVSMDGAPYLRK+DLK+Y  Y 
Sbjct: 61  SAKPPAKAQVVGWPPVRSYRKNSLREKKS-----GSYVKVSMDGAPYLRKVDLKMYKSYD 115

Query: 114 ELLKALENMF-KFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRI 172
           EL  ALE MF  FT+G     +   GSEY PTYEDKDGDWMLVGDVPWEMF+ SCKRLRI
Sbjct: 116 ELSSALEKMFSCFTIGESGLLDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRI 175

Query: 173 MKGSEARGL 181
           MKGSEA GL
Sbjct: 176 MKGSEAIGL 184

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.82
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.61
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.55
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.49
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	97.4
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	97.12
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.96
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	96.52
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	96.39
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	96.32
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.01
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.23
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	94.48
cd06399	92	PB1_P40 The PB1 domain is essential part of the p4	83.61

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=6.6e-65  Score=425.18  Aligned_cols=171  Identities=54%  Similarity=0.902  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCChh--------hhhhcCCCCCCCCCCCCC-----------------C--------CCCCccccc
Q 029966           11 LNLKATELRLGLPGSDENE--------QQTRNNKRSLPDTPDDLD-----------------T--------KDKSDEAAS   57 (184)
Q Consensus        11 l~l~~TELrLGLPG~~~~~--------~~~~~~Kr~~~~~~~~~~-----------------~--------~~~~~~~~p   57 (184)
                      |||++|||||||||+.+++        ....++||.|+++.+...                 .        .......+|
T Consensus         1 ln~~~TELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   80 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSSSSSPP   80 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCcccccccccccCcccccchhhhhhcccccccccccccccCcccccccccccccccccCCCC
Confidence            7999999999999986442        223568999998532110                 0        001222345


Q ss_pred             cccccccCCCCcchhhhhhhhcccccCCCCcceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcc-cccccc-----
Q 029966           58 VAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKF-TVGVYS-----  131 (184)
Q Consensus        58 ~~k~qvVGWPPVrs~Rkn~~~~~~~~~~~~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~-~~g~~~-----  131 (184)
                      .+++|+||||||++||+|.+...+.  ...++||||+|||+||||||||++|+||++|+.+|++||++ .|+++.     
T Consensus        81 ~~~~~~vgwpp~~s~r~n~~~~~~~--~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~  158 (215)
T PF02309_consen   81 ASKAQVVGWPPVRSFRKNSLSEKQS--SSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLN  158 (215)
T ss_dssp             -----BTTBS----S-----------------------------------------------------------------
T ss_pred             cccccccCCCccccccccccccccc--ccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccccc
Confidence            6789999999999999998763221  12479999999999999999999999999999999999954 344221     


Q ss_pred             ---cccCCCCCcceeEEecCCCCeEEecCcchhhHhhccceeEEecCCcccCCCC
Q 029966          132 ---EREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEARGLTA  183 (184)
Q Consensus       132 ---~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv~svkRLrImk~sea~gl~~  183 (184)
                         ..+..++++|+|||||+||||||||||||+|||++|||||||+.+|++||+|
T Consensus       159 ~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~  213 (215)
T PF02309_consen  159 ESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAP  213 (215)
T ss_dssp             -------------------------------------------------------
T ss_pred             chhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCC
Confidence               1122467899999999999999999999999999999999999999999997

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.82  E-value=5.1e-05  Score=53.65  Aligned_cols=68  Identities=22%  Similarity=0.375  Sum_probs=55.5

Q ss_pred             eeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC-cchhhHhhccc
Q 029966           90 YVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD-VPWEMFMSSCK  168 (184)
Q Consensus        90 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~svk  168 (184)
                      -||++..|. +=|.+.+..--+|.+|...++..|++. +          ..+.+.|.|.||||..+-+ .=|++.++.++
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~-~----------~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~   70 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL-D----------EDFQLKYKDEDGDLVTISSDEDLQEAIEQAK   70 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS-T----------SSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC-C----------ccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence            479999997 333588888889999999999999985 1          2589999999999998874 45888888775


Q ss_pred             e
Q 029966          169 R  169 (184)
Q Consensus       169 R  169 (184)
                      +
T Consensus        71 ~   71 (84)
T PF00564_consen   71 E   71 (84)
T ss_dssp             H
T ss_pred             h
Confidence            3

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00666 PB1 PB1 domain

Probab=97.61  E-value=0.00035  Score=49.36  Aligned_cols=65  Identities=18%  Similarity=0.344  Sum_probs=52.5

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC-cchhhHhhccc
Q 029966           91 VKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD-VPWEMFMSSCK  168 (184)
Q Consensus        91 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~svk  168 (184)
                      |||.-.|.  -|.+-+..--+|.+|...+.+.|++..           ..+.+.|+|.||||..+.+ .=|.+.++.++
T Consensus         4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~~~-----------~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~   69 (81)
T smart00666        4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGLDN-----------QSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD   69 (81)
T ss_pred             EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCCCC-----------CCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence            68887554  788888889999999999999999751           3589999999999987654 57777777665

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.55  E-value=0.00031  Score=51.78  Aligned_cols=54  Identities=26%  Similarity=0.475  Sum_probs=44.7

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966           91 VKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG  156 (184)
Q Consensus        91 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG  156 (184)
                      |||+..|.  .+.+-|..--+|++|.+.+.++|++.          +.+.|.|.|.|.||||.++-
T Consensus         3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~----------~~~~f~LkY~Ddegd~v~lt   56 (82)
T cd06407           3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD----------DMSAFDLKYLDDDEEWVLLT   56 (82)
T ss_pred             EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC----------CCCeeEEEEECCCCCeEEee
Confidence            89999997  55566666669999999999999975          12469999999999998763

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.49  E-value=0.00037  Score=52.38  Aligned_cols=59  Identities=25%  Similarity=0.334  Sum_probs=45.8

Q ss_pred             eeEEEEcCccccceeecC---CCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecCc
Q 029966           90 YVKVSMDGAPYLRKIDLK---LYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV  158 (184)
Q Consensus        90 ~VKV~MdG~pigRKVDL~---~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv  158 (184)
                      -|||.-+|.-+=-++++.   .--+|++|...+.+.|.+.          ...+|++.|.|.||||..+-..
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~----------~~~~~~l~Y~Dedgd~V~l~~D   63 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS----------PDADLSLTYTDEDGDVVTLVDD   63 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC----------CCCcEEEEEECCCCCEEEEccH
Confidence            489999998333344443   3579999999999999875          2357999999999999987543

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=97.40  E-value=0.0009  Score=46.93  Aligned_cols=66  Identities=20%  Similarity=0.375  Sum_probs=53.3

Q ss_pred             eeEEEEcCccccceeecC-CCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC-cchhhHhhcc
Q 029966           90 YVKVSMDGAPYLRKIDLK-LYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD-VPWEMFMSSC  167 (184)
Q Consensus        90 ~VKV~MdG~pigRKVDL~-~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~sv  167 (184)
                      -|||+-.|.  -|.+=+. .--+|++|...|.+.|++..           ..+.+.|.|.||||..+.+ .=|++.++.+
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~~-----------~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~   68 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLDA-----------VSFKLKYPDEDGDLVTISSDEDLEEAIEEA   68 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCCC-----------CcEEEEeeCCCCCEEEeCCHHHHHHHHHHH
Confidence            378888875  4555555 88899999999999999752           2589999999999999887 6777777776


Q ss_pred             c
Q 029966          168 K  168 (184)
Q Consensus       168 k  168 (184)
                      +
T Consensus        69 ~   69 (81)
T cd05992          69 R   69 (81)
T ss_pred             h
Confidence            5

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=97.12  E-value=0.0016  Score=48.45  Aligned_cols=53  Identities=13%  Similarity=0.208  Sum_probs=46.0

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966           91 VKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG  156 (184)
Q Consensus        91 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG  156 (184)
                      |||.-.|.-+--+++-+..-+|++|...+.++|++.             .+.+.|-|.||||.++-
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~-------------~f~lKYlDde~e~v~ls   55 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN-------------DIQIKYVDEENEEVSVN   55 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC-------------cceeEEEcCCCCEEEEE
Confidence            789999986666777777889999999999999987             27999999999998863

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.96  E-value=0.0058  Score=45.61  Aligned_cols=73  Identities=23%  Similarity=0.451  Sum_probs=50.7

Q ss_pred             eEEEEcCccccceeecCCCC-ChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecCc---chhhHhhc
Q 029966           91 VKVSMDGAPYLRKIDLKLYN-GYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV---PWEMFMSS  166 (184)
Q Consensus        91 VKV~MdG~pigRKVDL~~~~-sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv---PW~mFv~s  166 (184)
                      +|+.-.|.  -|++=+..-. +|.+|...+++.|....+        ....+.+.|.|.|||+.-+.+.   -|..-+..
T Consensus         3 iK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~~~~--------~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~   72 (81)
T cd06401           3 LKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRGKLG--------SSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSR   72 (81)
T ss_pred             EEEEeCCe--EEEEeccCccccHHHHHHHHHHHhccccC--------CcccEEEEEECCCCCEEEeccHHHHHHHHhcCc
Confidence            67777665  4554444423 999999999999996533        2357999999999999999875   33333334


Q ss_pred             cceeEEe
Q 029966          167 CKRLRIM  173 (184)
Q Consensus       167 vkRLrIm  173 (184)
                      .++|+|.
T Consensus        73 ~~~l~~~   79 (81)
T cd06401          73 ILKLTLF   79 (81)
T ss_pred             ceEEEEe
Confidence            4455543

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=96.52  E-value=0.0058  Score=45.85  Aligned_cols=51  Identities=20%  Similarity=0.212  Sum_probs=40.0

Q ss_pred             ccccceeecC--CCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966           98 APYLRKIDLK--LYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG  156 (184)
Q Consensus        98 ~pigRKVDL~--~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG  156 (184)
                      +|-||.+=++  ...|+.+|..++.+-|+...-        ....|.|.|.|.||||.+.-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~--------~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDF--------ETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc--------cCCcccEEEEcCCCCEEEEe
Confidence            4567765554  378999999999999997621        13469999999999999864

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=96.39  E-value=0.011  Score=44.29  Aligned_cols=66  Identities=24%  Similarity=0.303  Sum_probs=52.2

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec-CcchhhHhhccce
Q 029966           91 VKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG-DVPWEMFMSSCKR  169 (184)
Q Consensus        91 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG-DvPW~mFv~svkR  169 (184)
                      .||+-+|.  .|++....-=+|..|.+.|+.+|.+..          . .+.+||.|.|||..-+- |.=.+.|.+-..+
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~----------~-~~~vtYiDeD~D~ITlssd~eL~d~~~~~~~   69 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE----------I-KVGVTYIDNDNDEITLSSNKELQDFYRLSHR   69 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh----------h-HeEEEEEcCCCCEEEecchHHHHHHHHhccc
Confidence            48888897  899999999999999999999999871          1 27999999999987554 4456666554333

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.32  E-value=0.01  Score=44.48  Aligned_cols=54  Identities=22%  Similarity=0.370  Sum_probs=44.0

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966           91 VKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG  156 (184)
Q Consensus        91 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG  156 (184)
                      +|++-.|.-.--.+|.  .-+|++|.+.+.+||.+..          +..|++.|.|.|||-.-+.
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~~----------~q~ft~kw~DEEGDp~tiS   56 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFHN----------DQPFTLKWIDEEGDPCTIS   56 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCCC----------CCcEEEEEECCCCCceeec
Confidence            7999999855555555  7789999999999999862          2359999999999987654

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.01  E-value=0.017  Score=43.15  Aligned_cols=68  Identities=21%  Similarity=0.293  Sum_probs=49.9

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec-CcchhhHhhccce
Q 029966           91 VKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG-DVPWEMFMSSCKR  169 (184)
Q Consensus        91 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG-DvPW~mFv~svkR  169 (184)
                      ||...|..=-=-.+|.....+|++++.-|+.||.+.           +..|++-|.|.+||.+-+- |+-+..=+++++.
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~-----------~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~p   71 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIP-----------NVDFLIGYTDPHGDLLPINNDDNFLKALSSANP   71 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCC-----------CCcEEEEEeCCCCCEecccCcHHHHHHHHcCCC
Confidence            666666652222455555699999999999999976           1369999999999999764 5566666677763

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.23  E-value=0.097  Score=39.38  Aligned_cols=58  Identities=19%  Similarity=0.436  Sum_probs=42.6

Q ss_pred             eeEEEEcC---ccccceeec--CCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC
Q 029966           90 YVKVSMDG---APYLRKIDL--KLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD  157 (184)
Q Consensus        90 ~VKV~MdG---~pigRKVDL--~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD  157 (184)
                      .||.+..|   .+=-|++=|  ....+|++|...+.++|...          .+..|++.|.|.|||..-+..
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l----------~~~~ftlky~DeeGDlvtIss   64 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSL----------RGKNFQLFWKDEEGDLVAFSS   64 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHcccc----------CCCcEEEEEECCCCCEEeecC
Confidence            56777666   233344444  66679999999999999753          124699999999999987654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=94.48  E-value=0.13  Score=38.76  Aligned_cols=65  Identities=23%  Similarity=0.419  Sum_probs=50.9

Q ss_pred             ceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecCc-chhhHhhcc
Q 029966           89 IYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV-PWEMFMSSC  167 (184)
Q Consensus        89 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv-PW~mFv~sv  167 (184)
                      .=|||+-.|.  .|-|-+..-=+|++|...+.++|++.            ..+++.|.|. ||..-+++- =-++-+.++
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~~------------~~~~iKykDE-GD~iti~sq~DLd~Ai~~a   67 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGFK------------RRLKIKMKDD-GDMITMGDQDDLDMAIDTA   67 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCCC------------CceEEEEEcC-CCCccccCHHHHHHHHHHH
Confidence            3589999998  77777778888999999999999985            1489999999 999888764 344444444


Q ss_pred             c
Q 029966          168 K  168 (184)
Q Consensus       168 k  168 (184)
                      |
T Consensus        68 ~   68 (86)
T cd06408          68 R   68 (86)
T ss_pred             H
Confidence            4

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis

Probab=83.61  E-value=1.8  Score=33.09  Aligned_cols=39  Identities=23%  Similarity=0.323  Sum_probs=32.3

Q ss_pred             eecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEe
Q 029966          104 IDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLV  155 (184)
Q Consensus       104 VDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLV  155 (184)
                      =||+..-+|.+|+.-..+-|...             +-++.|.|.|||..-+
T Consensus        22 e~l~~~P~~kdLl~lmr~~f~~~-------------dIaLNYrD~EGDLIRl   60 (92)
T cd06399          22 EDLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLIRL   60 (92)
T ss_pred             cccccCccHHHHHHHHHHHhchh-------------heeeeeecCCCCEEEE
Confidence            37888899999999999999865             3589999999998643

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 71/200 (35%)

Query: 26  DENEQQTRNNK---RSLPDTPDDLDTKDKSDEAASVAKAQ----VVGWPP---------- 68
           +  E Q +             D+ D KD  D   S+   +    ++              
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 69  -IRSYRKNSLQQ------KKNEG----ECAGIYVKVSMDGAPYLRKIDLKLYNG------ 111
            + S ++  +Q+      + N             + SM    Y+ + D +LYN       
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAK 128

Query: 112 --------YPELLKALENMFKFT-VGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV---- 158
                   Y +L +AL  +     V +     G  GS          G   +  DV    
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLID----GVLGS----------GKTWVALDVCLSY 174

Query: 159 ------PWEMF---MSSCKR 169
                  +++F   + +C  
Sbjct: 175 KVQCKMDFKIFWLNLKNCNS 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.8
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.54
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.14
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	94.67
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	94.42
1pqs_A	77	Cell division control protein 24; alpha and beta p	90.62
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	89.92
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	88.65
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	87.95
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	84.03

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.80  E-value=0.0024  Score=47.02  Aligned_cols=57  Identities=18%  Similarity=0.255  Sum_probs=44.9

Q ss_pred             cceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966           88 GIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG  156 (184)
Q Consensus        88 ~~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG  156 (184)
                      ..=||++-.|.  .|-+.+..--+|++|...|.++|.+..          +..+++.|.|.|||+.-+-
T Consensus         6 ~vkvK~~~~gd--i~~~~v~~~i~~~~L~~kv~~~~~~~~----------~~~f~lky~DEeGD~itis   62 (89)
T 1vd2_A            6 QVRVKAYYRGD--IMITHFEPSISFEGLCNEVRDMCSFDN----------EQLFTMKWIDEEGDPCTVS   62 (89)
T ss_dssp             CEEEEEESSSC--EEEEEECTTCCHHHHHHHHHHHTTCCS----------SCCEEEEECCSSSCCEECC
T ss_pred             eEEEEEEeCCe--EEEEECCCCCCHHHHHHHHHHHhCCCC----------CCeEEEEEECCCCCccccc
Confidence            35788899998  445555556799999999999999752          2468999999999987653

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.54  E-value=0.005  Score=45.25  Aligned_cols=69  Identities=17%  Similarity=0.226  Sum_probs=52.2

Q ss_pred             ceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC-cchhhHhhcc
Q 029966           89 IYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD-VPWEMFMSSC  167 (184)
Q Consensus        89 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~sv  167 (184)
                      .-||...|..--=-.+|-....+|++|+.-|+++|.+.           ...|++.|.|.|||++-+-+ .-..+=+.++
T Consensus         7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a   75 (86)
T 1wmh_B            7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----------GLDVLLGYTDAHGDLLPLTNDDSLHRALASG   75 (86)
T ss_dssp             EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----------TCCCEEEEECTTSCEEECCSHHHHHHHTTSS
T ss_pred             EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-----------CCCEEEEEECCCCCEeeecCHHHHHHHHHhC
Confidence            56788888873333455567789999999999999964           23599999999999997754 3555666677


Q ss_pred             c
Q 029966          168 K  168 (184)
Q Consensus       168 k  168 (184)
                      |
T Consensus        76 ~   76 (86)
T 1wmh_B           76 P   76 (86)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.14  E-value=0.039  Score=41.40  Aligned_cols=61  Identities=16%  Similarity=0.294  Sum_probs=44.1

Q ss_pred             cceeEEEEcCc----cccceeecCC-----------CCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCe
Q 029966           88 GIYVKVSMDGA----PYLRKIDLKL-----------YNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDW  152 (184)
Q Consensus        88 ~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDw  152 (184)
                      +.-||++..|.    .=-|++=|..           -.+|++|...+.++|..-          .+..|.+.|.|.|||+
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l----------~~~~f~l~Y~DedGDl   74 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL----------RPGGFQAHYRAERGDL   74 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS----------CSSCEEEEEECTTCCE
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc----------CCCcEEEEEECCCCCE
Confidence            35678888652    2345555532           248999999999999843          1236999999999999


Q ss_pred             EEecCc
Q 029966          153 MLVGDV  158 (184)
Q Consensus       153 MLVGDv  158 (184)
                      .-+-+.
T Consensus        75 ItiSsD   80 (102)
T 2kkc_A           75 VAFSSD   80 (102)
T ss_dssp             EEECSH
T ss_pred             EEecCH
Confidence            877654

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=94.67  E-value=0.11  Score=38.84  Aligned_cols=75  Identities=16%  Similarity=0.314  Sum_probs=54.9

Q ss_pred             cceeEEEEcCc------cccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecCc-ch
Q 029966           88 GIYVKVSMDGA------PYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV-PW  160 (184)
Q Consensus        88 ~~~VKV~MdG~------pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv-PW  160 (184)
                      +.-|||+-+..      .=.|.|=+..-=+|++|...+.+-|+...+.     .. .....+-|+|.|||+...++. =|
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~-----~i-~~~~klkYkDEdGD~Vtl~sddDl   78 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNN-----NI-SPITKIKYQDEDGDFVVLGSDEDW   78 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSS-----CC-CCCCCEEEECSSSCEEEECSHHHH
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccc-----cc-cceeEEEEEcCCCCEEEEcCHHHH
Confidence            35688887742      1236666778889999999999999964121     00 235799999999999877765 89


Q ss_pred             hhHhhccc
Q 029966          161 EMFMSSCK  168 (184)
Q Consensus       161 ~mFv~svk  168 (184)
                      +|-+++++
T Consensus        79 ~~A~e~~~   86 (98)
T 1q1o_A           79 NVAKEMLA   86 (98)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98888763

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=94.42  E-value=0.068  Score=41.16  Aligned_cols=62  Identities=18%  Similarity=0.266  Sum_probs=44.6

Q ss_pred             CcceeEEEEcC----ccccceeecC-----------CCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCC
Q 029966           87 AGIYVKVSMDG----APYLRKIDLK-----------LYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGD  151 (184)
Q Consensus        87 ~~~~VKV~MdG----~pigRKVDL~-----------~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGD  151 (184)
                      ...-||+...|    ..=-|++=|.           .-.+|++|...+.++|..-          .+..|.+.|.|.|||
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L----------~~~~f~l~YkDEdGD   88 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL----------RPGGFQAHYRAERGD   88 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS----------CSSCEEEEEECTTCC
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc----------CCCcEEEEEECCCCC
Confidence            45788999874    1224555554           1359999999999999733          123699999999999


Q ss_pred             eEEecCc
Q 029966          152 WMLVGDV  158 (184)
Q Consensus       152 wMLVGDv  158 (184)
                      +.-+-..
T Consensus        89 lItISsD   95 (117)
T 2ktr_A           89 LVAFSSD   95 (117)
T ss_dssp             EEEECSH
T ss_pred             EEEecCH
Confidence            8876543

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=90.62  E-value=0.25  Score=35.21  Aligned_cols=57  Identities=18%  Similarity=0.366  Sum_probs=42.0

Q ss_pred             cCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC-cchhhHhhccc
Q 029966          106 LKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD-VPWEMFMSSCK  168 (184)
Q Consensus       106 L~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~svk  168 (184)
                      ...--+|++|...+.+-|+....     ++ ......+-|+|.|||+...++ .=|+|-+.++|
T Consensus         8 V~~~i~f~~L~~kI~~kl~~~~~-----~~-~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~   65 (77)
T 1pqs_A            8 VEKVWNFDDLIMAINSKISNTHN-----NN-ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA   65 (77)
T ss_dssp             CTTCCCSHHHHHHHHHHTTTTTS-----SC-SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHHccccc-----cc-ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence            34455799999999999985310     10 124689999999999987665 58999888764

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=89.92  E-value=0.45  Score=36.20  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=33.7

Q ss_pred             ecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC
Q 029966          105 DLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD  157 (184)
Q Consensus       105 DL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD  157 (184)
                      ||+..-.|.+|+.-..+-|...             +-+|-|.|.|||+.-+=|
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~~-------------DIaLNYrD~eGDLIrild   67 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLVRLLS   67 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCCS-------------SEEEEEECTTSCEEECCS
T ss_pred             ccccCCCHHHHHHHHHHHhccc-------------ceeeeeecCCCCEEEEcc
Confidence            6788889999999999999843             358999999999986544

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=88.65  E-value=1  Score=33.08  Aligned_cols=54  Identities=7%  Similarity=0.124  Sum_probs=40.8

Q ss_pred             eeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966           90 YVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG  156 (184)
Q Consensus        90 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG  156 (184)
                      =+||.-.|...---|.-..--++++|...+..+|+++             .++++|-|.|||-.-|=
T Consensus         8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~-------------~~~ikY~DEenD~v~i~   61 (87)
T 2bkf_A            8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSIN   61 (87)
T ss_dssp             EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-------------SEEEEEECTTSCEEEEC
T ss_pred             EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC-------------ceEEEEEcCCCCEEEEe
Confidence            4688888883322353333678999999999999875             37999999999987663

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=87.95  E-value=1.1  Score=33.82  Aligned_cols=64  Identities=6%  Similarity=0.097  Sum_probs=47.0

Q ss_pred             ceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecCcchhhHhhcc
Q 029966           89 IYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSC  167 (184)
Q Consensus        89 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv~sv  167 (184)
                      .-+||.-.|...---|.-..--.+++|...+..+|+++             .++|.|-|.|||-.-|  .-+.+|-+.+
T Consensus        15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~-------------~~~IkY~DEenD~V~i--~Sq~E~eEAl   78 (101)
T 1wj6_A           15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSI--NSQGEYEEAL   78 (101)
T ss_dssp             EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS-------------SBCCEEECTTSCEECC--CSHHHHHHHH
T ss_pred             EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC-------------ceEEEEecCCCCEEEE--ecHHHHHHHH
Confidence            45799999984333354444678999999999999875             3699999999999877  3466554433

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=84.03  E-value=3.8  Score=29.49  Aligned_cols=70  Identities=10%  Similarity=0.116  Sum_probs=54.2

Q ss_pred             ceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEec-CCCCeEEecCcchhhHhhcc
Q 029966           89 IYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYED-KDGDWMLVGDVPWEMFMSSC  167 (184)
Q Consensus        89 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeD-kdGDwMLVGDvPW~mFv~sv  167 (184)
                      .=|||+-.   +.--|....=-+|.+|...|.+-+... ++          +-++-|.| .+|.|++.+|.-++.-...+
T Consensus         6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~-~~----------~~~LsYk~~~s~~~vi~~d~dl~~aw~~~   71 (83)
T 1oey_A            6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR-LE----------HTKLSYRPRDSNELVPLSEDSMKDAWGQV   71 (83)
T ss_dssp             EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC-GG----------GCCEEECCTTCSSCEECCTTTHHHHHTTC
T ss_pred             EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC-cc----------eeEEEeeCCCCCCeeccChHHHHHHHHhc
Confidence            34677666   677888888889999999999999874 21          24889999 58888999999998877764


Q ss_pred             c--eeEE
Q 029966          168 K--RLRI  172 (184)
Q Consensus       168 k--RLrI  172 (184)
                      +  ||++
T Consensus        72 ~n~~LtL   78 (83)
T 1oey_A           72 KNYCLTL   78 (83)
T ss_dssp             BTTEEEE
T ss_pred             cCCcEEE
Confidence            4  4554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	97.34
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	96.66
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	88.92
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	84.58
d1wmha_	83	Protein kinase C, iota type {Human (Homo sapiens)	83.47

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00017  Score=51.22  Aligned_cols=64  Identities=8%  Similarity=0.139  Sum_probs=50.5

Q ss_pred             ceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec-CcchhhHhh
Q 029966           89 IYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG-DVPWEMFMS  165 (184)
Q Consensus        89 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG-DvPW~mFv~  165 (184)
                      .=|||+..|..+=-+|-+..-.+|.+|...|+..|++.             .+.+.|.|.|+||.++. |.=.++.+.
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~-------------~~~lkY~Ddd~e~v~l~~d~dl~E~~~   69 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSINSQGEYEEALK   69 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-------------SEEEEEECTTSCEEEECSHHHHHHHHH
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCcc-------------cceEEEEcCCCCEEEEecHHHHHHHHH
Confidence            45899998886555676677889999999999999864             26899999999998875 444555544

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.0016  Score=45.26  Aligned_cols=72  Identities=13%  Similarity=0.086  Sum_probs=53.2

Q ss_pred             CCcceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec-CcchhhHh
Q 029966           86 CAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG-DVPWEMFM  164 (184)
Q Consensus        86 ~~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG-DvPW~mFv  164 (184)
                      .+..=|||+.++.  -|.+=|..=-+|.+|...+.+.|+..             .+++-|+|.||||..+- |.=+++-+
T Consensus        10 ~~~ikVKv~~~~D--~~~~~l~~~it~~dL~~kI~~rf~~~-------------~~~lkY~Dedgd~v~i~sD~Dl~~ai   74 (85)
T d1ip9a_          10 LKTTKIKFYYKDD--IFALMLKGDTTYKELRSKIAPRIDTD-------------NFKLQTKLFDGSGEEIKTDSQVSNII   74 (85)
T ss_dssp             CCCEEEEECBTTC--CEEEEECSCCCHHHHHHHHHHHHTSS-------------CEEEEECCSSSCCSCCCSHHHHHHHH
T ss_pred             CCCEEEEEEECCc--EEEEEeCCCCCHHHHHHHHHHHhCCC-------------ceEEEEEcCCCCEEEEeCHHHHHHHH
Confidence            3457889999988  45555566688999999999999743             37999999999997654 44566655


Q ss_pred             hccceeEE
Q 029966          165 SSCKRLRI  172 (184)
Q Consensus       165 ~svkRLrI  172 (184)
                      +...||.+
T Consensus        75 ~~~~kl~v   82 (85)
T d1ip9a_          75 QAKLKISV   82 (85)
T ss_dssp             HTTCCEEE
T ss_pred             HhcCcEEE
Confidence            55555443

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=0.5  Score=32.71  Aligned_cols=55  Identities=18%  Similarity=0.286  Sum_probs=43.5

Q ss_pred             eeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec-CcchhhHhhccc
Q 029966          103 KIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG-DVPWEMFMSSCK  168 (184)
Q Consensus       103 KVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG-DvPW~mFv~svk  168 (184)
                      .+|....++|++.+.-|+++-.+.           +-++.+.|.|.+||.+-+- |.-+.-=++|++
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~l~-----------~~~f~i~Y~D~hgDLLPINNDdNf~kA~~sa~   72 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQIP-----------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP   72 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTTCT-----------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred             eeccccccCHHHHHHHHHHHcCCC-----------CCcEEEEEecCCCCcccccCchHHHHHHHhcC
Confidence            577788899999999999988764           2368999999999999775 445555566666

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.58  E-value=0.67  Score=33.30  Aligned_cols=40  Identities=23%  Similarity=0.317  Sum_probs=33.6

Q ss_pred             eeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEe
Q 029966          103 KIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLV  155 (184)
Q Consensus       103 KVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLV  155 (184)
                      -=||+.--+|.+|..-..+-|...             +-++-|.|.|||..-+
T Consensus        24 eedl~~~P~ykdLl~lmr~~f~~~-------------dIaLNYrD~eGDLIRl   63 (105)
T d1oeyj_          24 EEDLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLVRL   63 (105)
T ss_dssp             CSCTTCCCCHHHHHHHHHHHHCCS-------------SEEEEEECTTSCEEEC
T ss_pred             ccccccCccHHHHHHHHHHHhccc-------------eeEeeeecCCCCEEEE
Confidence            347889999999999999999864             3589999999998754

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.47  E-value=1.4  Score=30.45  Aligned_cols=52  Identities=17%  Similarity=0.277  Sum_probs=42.0

Q ss_pred             eeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeE
Q 029966           90 YVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWM  153 (184)
Q Consensus        90 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwM  153 (184)
                      -||+.-.|..+--.+|.+  -.|++|...+..|.++..          ..-|++-+.|.|||=-
T Consensus         3 riK~~y~G~i~it~~~~~--it~e~l~~evr~~C~f~~----------~q~fT~KWiDeEGDPC   54 (83)
T d1wmha_           3 RVKAYYRGDIMITHFEPS--ISFEGLCNEVRDMCSFDN----------EQLFTMKWIDEEGDPC   54 (83)
T ss_dssp             EEEEEETTEEEEEEECTT--CCHHHHHHHHHHHTTCCT----------TCCCEEEEECTTSCEE
T ss_pred             EEEEEecCeEEEEecCCC--ccHHHHHHHHHHHhCCCc----------CCcEEEEEEcCCCCce
Confidence            478889998777777765  589999999999998862          2348999999999954